From sbrubaker at solazyme.com Wed Jan 8 12:10:30 2014 From: sbrubaker at solazyme.com (Shane Brubaker) Date: Wed, 8 Jan 2014 18:10:30 +0000 Subject: [maker-devel] Plastid annotation Message-ID: <61D01ACB70C1E141A150BA9F586D5BFA50EF7ADE@EXCHANGE-MB01.internal.solazyme.com> Hi, we are embarking on a project to annotate several plastids. We want to do all the work in-house though (i.e. we don't want to use a web service) and we would like to use MAKER if possible. As you know the plastid is essentially bacterial, so I get the impression that it would not be appropriate to use Augustus or SNAP on it, is that correct? Is it possible instead to use Glimmer within MAKER? I was wondering if anyone has suggestions on 1) how to use MAKER with organellar genomes and 2) other general organellar annotation piplelines that people have found useful (and useable) that are downloadable to a local installation. Thanks, Shane Brubaker -------------- next part -------------- An HTML attachment was scrubbed... URL: From michael.s.campbell1 at gmail.com Wed Jan 8 14:51:03 2014 From: michael.s.campbell1 at gmail.com (Michael Campbell) Date: Wed, 8 Jan 2014 13:51:03 -0700 Subject: [maker-devel] FW: extract repeats from maker output In-Reply-To: <7A60AB257EFF2B48B1F4C814817EA05365EDC871@mxb2.hg.genetics.utah.edu> References: <7A60AB257EFF2B48B1F4C814817EA05365EDC871@mxb2.hg.genetics.utah.edu> Message-ID: Hi Stefan, MAKER does write the repeatmasker output to the final gff3 file. However, to save space and prevent redundancy in the case of nested or overlapping repeats the repeat regions are collapsed and named after the longest repeat contributing to the repeat region. This means that the portion of the genome being masked is easy to calculate, but the length of the masked regions reported in the MAKER output will non always represent the length of individual repetitive elements. To get the true length distribution you could run repeat masker on the genome outside of MAKER or look for the repeatmasker output in the void directories in the datastore for each scaffold. Also make sure that you are using the most recent version of MAKER. There was one recent bug fix that affected the repeatmaksker output that was written to the gff3 file that resulted, in some cases, in an underestimation of the portion of the genome that was masked prior to annotation. I've copied this to the MAKER dev list just in case anyone else has additional insights. Mike > > Dear Mark Yandell, > > I wanted to ask if it's possible to extract a file with all repeats found > from the maker output? > > I would like to see how much of the genome is repeats and check their > lengths distribution. > > All the best, > Stefan Prost > > > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From dence at genetics.utah.edu Wed Jan 8 17:44:10 2014 From: dence at genetics.utah.edu (Daniel Ence) Date: Wed, 8 Jan 2014 23:44:10 +0000 Subject: [maker-devel] Plastid annotation In-Reply-To: <61D01ACB70C1E141A150BA9F586D5BFA50EF7ADE@EXCHANGE-MB01.internal.solazyme.com> References: <61D01ACB70C1E141A150BA9F586D5BFA50EF7ADE@EXCHANGE-MB01.internal.solazyme.com> Message-ID: Hi Shane, I'm not familiar with anyone using MAKER to annotate organellar genomes. My guess is that there might be a more specialized pipeline for this purpose. Glimmer isn't integrated into MAKER, but if you can get a gff3 file from it, you can pass those predictions to MAKER. The only difference between passing predictions and running it within MAKER is that MAKER will generate and pass "hints" based on the blast alignments to its internal predictors. MAKER can't do that with predictions generated externally. Thanks, Daniel Daniel Ence Graduate Student Eccles Institute of Human Genetics University of Utah 15 North 2030 East, Room 2100 Salt Lake City, UT 84112-5330 ________________________________ From: maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of Shane Brubaker [sbrubaker at solazyme.com] Sent: Wednesday, January 08, 2014 11:10 AM To: maker-devel at yandell-lab.org Cc: Aren Ewing Subject: [maker-devel] Plastid annotation Hi, we are embarking on a project to annotate several plastids. We want to do all the work in-house though (i.e. we don?t want to use a web service) and we would like to use MAKER if possible. As you know the plastid is essentially bacterial, so I get the impression that it would not be appropriate to use Augustus or SNAP on it, is that correct? Is it possible instead to use Glimmer within MAKER? I was wondering if anyone has suggestions on 1) how to use MAKER with organellar genomes and 2) other general organellar annotation piplelines that people have found useful (and useable) that are downloadable to a local installation. Thanks, Shane Brubaker -------------- next part -------------- An HTML attachment was scrubbed... URL: From sbrubaker at solazyme.com Wed Jan 8 17:47:30 2014 From: sbrubaker at solazyme.com (Shane Brubaker) Date: Wed, 8 Jan 2014 23:47:30 +0000 Subject: [maker-devel] Plastid annotation In-Reply-To: References: <61D01ACB70C1E141A150BA9F586D5BFA50EF7ADE@EXCHANGE-MB01.internal.solazyme.com> Message-ID: <61D01ACB70C1E141A150BA9F586D5BFA50EF7E00@EXCHANGE-MB01.internal.solazyme.com> Thanks very much for the information! From: Daniel Ence [mailto:dence at genetics.utah.edu] Sent: Wednesday, January 08, 2014 3:44 PM To: Shane Brubaker; maker-devel at yandell-lab.org Cc: Aren Ewing Subject: RE: Plastid annotation Hi Shane, I'm not familiar with anyone using MAKER to annotate organellar genomes. My guess is that there might be a more specialized pipeline for this purpose. Glimmer isn't integrated into MAKER, but if you can get a gff3 file from it, you can pass those predictions to MAKER. The only difference between passing predictions and running it within MAKER is that MAKER will generate and pass "hints" based on the blast alignments to its internal predictors. MAKER can't do that with predictions generated externally. Thanks, Daniel Daniel Ence Graduate Student Eccles Institute of Human Genetics University of Utah 15 North 2030 East, Room 2100 Salt Lake City, UT 84112-5330 ________________________________ From: maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of Shane Brubaker [sbrubaker at solazyme.com] Sent: Wednesday, January 08, 2014 11:10 AM To: maker-devel at yandell-lab.org Cc: Aren Ewing Subject: [maker-devel] Plastid annotation Hi, we are embarking on a project to annotate several plastids. We want to do all the work in-house though (i.e. we don't want to use a web service) and we would like to use MAKER if possible. As you know the plastid is essentially bacterial, so I get the impression that it would not be appropriate to use Augustus or SNAP on it, is that correct? Is it possible instead to use Glimmer within MAKER? I was wondering if anyone has suggestions on 1) how to use MAKER with organellar genomes and 2) other general organellar annotation piplelines that people have found useful (and useable) that are downloadable to a local installation. Thanks, Shane Brubaker -------------- next part -------------- An HTML attachment was scrubbed... URL: From amelia.ireland at gmod.org Thu Jan 9 15:15:03 2014 From: amelia.ireland at gmod.org (Amelia Ireland) Date: Thu, 9 Jan 2014 13:15:03 -0800 Subject: [maker-devel] GMOD in San Diego: PAG XXII and GMOD meeting Message-ID: Greetings, GMODders! If you're going to be in San Diego for PAG next week, we've put together a guide to the GMOD sessions at PAG, as well as a selection of content from GMOD users. You can find it on the GMOD website at http://gmod.org/wiki/PAG Please come along to the GMOD sessions and poster and introduce yourself and your project -- we would love to hear what you're doing with GMOD software! If you want to come to the GMOD Community Meeting on Jan 16 and 17, there is still time to register, but please do so ASAP. The agenda and registration link are on the wiki: http://gmod.org/wiki/Jan_2014_GMOD_Meeting Thanks! -- Amelia Ireland GMOD Community Support Generic Model Organism Database project http://gmod.org || @gmodproject -------------- next part -------------- An HTML attachment was scrubbed... URL: From mikael.durling at slu.se Fri Jan 10 03:48:49 2014 From: mikael.durling at slu.se (=?iso-8859-1?Q?Mikael_Brandstr=F6m_Durling?=) Date: Fri, 10 Jan 2014 09:48:49 +0000 Subject: [maker-devel] ncRNA support in maker Message-ID: Hi Carson and other maker developers, I was reading the source code of the latest maker release and noted several references to ncRNAs, snoscan and trnascan. Can these be incorporated into the normal annotation workflow? If so, are there any instructions available for that? best regards, Mikael Durling -------------- next part -------------- A non-text attachment was scrubbed... Name: signature.asc Type: application/pgp-signature Size: 496 bytes Desc: Message signed with OpenPGP using GPGMail URL: From carsonhh at gmail.com Fri Jan 10 15:03:25 2014 From: carsonhh at gmail.com (Carson Holt) Date: Fri, 10 Jan 2014 14:03:25 -0700 Subject: [maker-devel] ncRNA support in maker Message-ID: Hi Mikael, The options are part of the new MAKER-P integration (http://www.plantphysiol.org/content/early/2013/12/06/pp.113.230144.abstrac t). Additional documentation/tutorials will be forthcoming - probably in a nice wiki page as part of the upcoming GMOD Malaysia courses in February or alternatively with the annual GMOD summer school. The tRNA option is easy enough to turn on (just set trna=1 in the maker_opts.ctl file). Thanks, Carson On 1/10/14, 2:48 AM, "Mikael Brandstr?m Durling" wrote: >Hi Carson and other maker developers, > >I was reading the source code of the latest maker release and noted >several references to ncRNAs, snoscan and trnascan. Can these be >incorporated into the normal annotation workflow? If so, are there any >instructions available for that? > >best regards, >Mikael Durling >_______________________________________________ >maker-devel mailing list >maker-devel at box290.bluehost.com >http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org From saneasheikh at gmail.com Mon Jan 13 03:17:25 2014 From: saneasheikh at gmail.com (Sanea Sheikh) Date: Mon, 13 Jan 2014 10:17:25 +0100 Subject: [maker-devel] Problem with re-annotation Message-ID: Hello I am using Maker to annotate a genome for which I only have EST data and some protein data. I ran Maker once using this EST and protein data (est2genome=1, protein2genome=1). I had the Maker output. I combined all the GFF files for all the contigs. I used the combined GFF file to train SNAP which gave me a .hmm file. Now I modified the Maker opts control file. I provided the hmm file in snap_hmm. I set est2genome=0 and protein2genome=0. I ran Maker again assuming that now I have trained the gene predictor and I would have better annotations. But now the output file that I get does not have Maker annotation. I have attached the control files and the output file for the re-run so you can have a look and let me know what I am doing wrong in order to re-annotate the genome using the output from the previous run. Sanea -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: concatenated_gff_run1.gff Type: application/octet-stream Size: 8158525 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: Run1maker_opts.ctl Type: application/octet-stream Size: 4683 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: Run2maker_opts.ctl Type: application/octet-stream Size: 4748 bytes Desc: not available URL: From charlos9 at gmail.com Mon Jan 13 14:00:12 2014 From: charlos9 at gmail.com (carlos vargas) Date: Mon, 13 Jan 2014 21:00:12 +0100 Subject: [maker-devel] Problem installing maker Message-ID: Hello, I have been trying to install maker but I've been facing several issues. After installing all of the prerequisites I ran perl Build.PL and ./Build install. No issues were detected. Afterwards I tried to test maker by simply executing maker -h and got the following error: Can't locate MAKER/ConfigData.pm in @INC (@INC contains: ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42. I found a similar thread which suggested reinstalling (which I did) but I still face the same issue. The full messages are below. Thank you for your help! Carlos ~/software/maker/src$ sudo perl Build.PL MAKER supports distributed parallelization via MPI. Would you like to configure MAKER for MPI (This requires that you have an MPI client installed)? [N ] N Would you like to install the web interface to MAKER (MWAS) on this machine This requires that you be logged in as root or use sudo for './Build install'? [N ] N Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'MAKER' version '2.3' The file 'Build' has been created for you to finish installing MAKER. ============================================================================== STATUS MAKER 2.3 ============================================================================== PERL Dependencies: VERIFIED External Programs: VERIFIED External C Libraries: VERIFIED MPI SUPPORT: DISABLED MWAS Web Interface: DISABLED MAKER PACKAGE: CONFIGURATION OK Important Commands: ./Build installdeps #installs missing PERL dependencies ./Build installexes #installs all missing external programs ./Build install #installs MAKER ./Build status #Shows this status menu Other Commands: ./Build repeatmasker #installs RepeatMasker (asks for RepBase) ./Build blast #installs BLAST (NCBI BLAST+) ./Build exonerate #installs Exonerate (v2 on UNIX / v1 on Mac OSX) ./Build snap #installs SNAP ./Build augustus #installs Augustus ./Build apollo #installs Apollo ./Build gbrowse #installs GBrowse (must be root) ./Build jbrowse #installs JBrowse (MAKER copy, not web accecible) ./Build webapollo #installs WebApollo (use maker2wap to create DBs) ./Build mpich2 #installs MPICH2 (but manual install recommended) ~/software/maker/src$ sudo ./Build install Building MAKER Installing MAKER... Building MAKER Installing ~/software/maker/src/../perl/lib/MAKER/ConfigData.pm ~/software/maker/src$ maker -h Can't locate MAKER/ConfigData.pm in @INC (@INC contains: ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42. -------------- next part -------------- An HTML attachment was scrubbed... URL: From carsonhh at gmail.com Mon Jan 13 14:06:13 2014 From: carsonhh at gmail.com (Carson Holt) Date: Mon, 13 Jan 2014 12:06:13 -0800 Subject: [maker-devel] Problem installing maker In-Reply-To: References: Message-ID: You are running maker from .../maker/src/bin/. That is just the source code. The scripts for execution will be in .../maker/bin/ after installation. You need to use those. Thanks, Carson > On Jan 13, 2014, at 12:00 PM, carlos vargas wrote: > > Hello, > > I have been trying to install maker but I've been facing several issues. After installing all of the prerequisites I ran perl Build.PL and ./Build install. No issues were detected. Afterwards I tried to test maker by simply executing maker -h and got the following error: > > Can't locate MAKER/ConfigData.pm in @INC (@INC contains: ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. > BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42. > > I found a similar thread which suggested reinstalling (which I did) but I still face the same issue. The full messages are below. > > > Thank you for your help! > > Carlos > > > ~/software/maker/src$ sudo perl Build.PL > > MAKER supports distributed parallelization via MPI. > Would you like to configure MAKER for MPI (This > requires that you have an MPI client installed)? [N ] > N > > Would you like to install the web interface to MAKER (MWAS) on this machine > This requires that you be logged in as root or use sudo for './Build install'? [N ] > N > Created MYMETA.yml and MYMETA.json > Creating new 'Build' script for 'MAKER' version '2.3' > > > The file 'Build' has been created for you to finish installing MAKER. > > > ============================================================================== > STATUS MAKER 2.3 > ============================================================================== > PERL Dependencies: VERIFIED > External Programs: VERIFIED > External C Libraries: VERIFIED > MPI SUPPORT: DISABLED > MWAS Web Interface: DISABLED > MAKER PACKAGE: CONFIGURATION OK > > > Important Commands: > ./Build installdeps #installs missing PERL dependencies > ./Build installexes #installs all missing external programs > ./Build install #installs MAKER > ./Build status #Shows this status menu > > Other Commands: > ./Build repeatmasker #installs RepeatMasker (asks for RepBase) > ./Build blast #installs BLAST (NCBI BLAST+) > ./Build exonerate #installs Exonerate (v2 on UNIX / v1 on Mac OSX) > ./Build snap #installs SNAP > ./Build augustus #installs Augustus > ./Build apollo #installs Apollo > ./Build gbrowse #installs GBrowse (must be root) > ./Build jbrowse #installs JBrowse (MAKER copy, not web accecible) > ./Build webapollo #installs WebApollo (use maker2wap to create DBs) > ./Build mpich2 #installs MPICH2 (but manual install recommended) > > ~/software/maker/src$ sudo ./Build install > Building MAKER > Installing MAKER... > Building MAKER > Installing ~/software/maker/src/../perl/lib/MAKER/ConfigData.pm > > ~/software/maker/src$ maker -h > Can't locate MAKER/ConfigData.pm in @INC (@INC contains: ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. > BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42. > > > _______________________________________________ > maker-devel mailing list > maker-devel at box290.bluehost.com > http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org From barry.utah at gmail.com Mon Jan 13 15:21:22 2014 From: barry.utah at gmail.com (Barry Moore) Date: Mon, 13 Jan 2014 14:21:22 -0700 Subject: [maker-devel] Problem installing maker In-Reply-To: References: Message-ID: Hi Carlos, Did you run ./Build install? If not do that first and then you want to run the copy of maker in ~/software/maker/bin/maker. B On Jan 13, 2014, at 1:00 PM, carlos vargas wrote: > Hello, > > I have been trying to install maker but I've been facing several issues. After installing all of the prerequisites I ran perl Build.PL and ./Build install. No issues were detected. Afterwards I tried to test maker by simply executing maker -h and got the following error: > > Can't locate MAKER/ConfigData.pm in @INC (@INC contains: ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. > BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42. > > I found a similar thread which suggested reinstalling (which I did) but I still face the same issue. The full messages are below. > > > Thank you for your help! > > Carlos > > > ~/software/maker/src$ sudo perl Build.PL > > MAKER supports distributed parallelization via MPI. > Would you like to configure MAKER for MPI (This > requires that you have an MPI client installed)? [N ] > N > > Would you like to install the web interface to MAKER (MWAS) on this machine > This requires that you be logged in as root or use sudo for './Build install'? [N ] > N > Created MYMETA.yml and MYMETA.json > Creating new 'Build' script for 'MAKER' version '2.3' > > > The file 'Build' has been created for you to finish installing MAKER. > > > ============================================================================== > STATUS MAKER 2.3 > ============================================================================== > PERL Dependencies: VERIFIED > External Programs: VERIFIED > External C Libraries: VERIFIED > MPI SUPPORT: DISABLED > MWAS Web Interface: DISABLED > MAKER PACKAGE: CONFIGURATION OK > > > Important Commands: > ./Build installdeps #installs missing PERL dependencies > ./Build installexes #installs all missing external programs > ./Build install #installs MAKER > ./Build status #Shows this status menu > > Other Commands: > ./Build repeatmasker #installs RepeatMasker (asks for RepBase) > ./Build blast #installs BLAST (NCBI BLAST+) > ./Build exonerate #installs Exonerate (v2 on UNIX / v1 on Mac OSX) > ./Build snap #installs SNAP > ./Build augustus #installs Augustus > ./Build apollo #installs Apollo > ./Build gbrowse #installs GBrowse (must be root) > ./Build jbrowse #installs JBrowse (MAKER copy, not web accecible) > ./Build webapollo #installs WebApollo (use maker2wap to create DBs) > ./Build mpich2 #installs MPICH2 (but manual install recommended) > > ~/software/maker/src$ sudo ./Build install > Building MAKER > Installing MAKER... > Building MAKER > Installing ~/software/maker/src/../perl/lib/MAKER/ConfigData.pm > > ~/software/maker/src$ maker -h > Can't locate MAKER/ConfigData.pm in @INC (@INC contains: ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. > BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42. > > > _______________________________________________ > maker-devel mailing list > maker-devel at box290.bluehost.com > http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org Barry Moore Research Scientist Dept. of Human Genetics University of Utah Salt Lake City, UT 84112 -------------------------------------------- (801) 585-3543 -------------- next part -------------- An HTML attachment was scrubbed... URL: From carsonhh at gmail.com Mon Jan 13 18:39:19 2014 From: carsonhh at gmail.com (Carson Holt) Date: Mon, 13 Jan 2014 17:39:19 -0700 Subject: [maker-devel] Problem with re-annotation In-Reply-To: References: Message-ID: Hi Sanea, There are no snap calls in your results. It?s as if SNAP never even ran. Did you capture STDERR from your second run? If so can you send it to me. I just want to see if it even shows SNAP as having run in the progress reports. Thanks, Carson From: Sanea Sheikh Date: Monday, January 13, 2014 at 2:17 AM To: Subject: [maker-devel] Problem with re-annotation Hello I am using Maker to annotate a genome for which I only have EST data and some protein data. I ran Maker once using this EST and protein data (est2genome=1, protein2genome=1). I had the Maker output. I combined all the GFF files for all the contigs. I used the combined GFF file to train SNAP which gave me a .hmm file. Now I modified the Maker opts control file. I provided the hmm file in snap_hmm. I set est2genome=0 and protein2genome=0. I ran Maker again assuming that now I have trained the gene predictor and I would have better annotations. But now the output file that I get does not have Maker annotation. I have attached the control files and the output file for the re-run so you can have a look and let me know what I am doing wrong in order to re-annotate the genome using the output from the previous run. Sanea _______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org -------------- next part -------------- An HTML attachment was scrubbed... URL: From carson.holt at genetics.utah.edu Tue Jan 14 12:14:00 2014 From: carson.holt at genetics.utah.edu (Carson Holt) Date: Tue, 14 Jan 2014 18:14:00 +0000 Subject: [maker-devel] Issues regarding maker In-Reply-To: <7A60AB257EFF2B48B1F4C814817EA05365EE0D6E@mxb2.hg.genetics.utah.edu> References: <1766640308.998.1389701368895.JavaMail.root@mail.icgeb.res.in> <7A60AB257EFF2B48B1F4C814817EA05365EE0D6E@mxb2.hg.genetics.utah.edu> Message-ID: Hi Nandita, Check that you do not have an error like an extra space or character when you add it to your PATH. Also you must either ?source? the modified ./bashrc or restart your terminal for changes to the PATH environmental variable to take effect. You can check the contents of your active PATH variable by doing 'echo $PATH' on the command line. Also check that you finished the installation procedure. If so the 'maker' script should be in the .../maker/bin/ directory. Make sure it is there, and make sure it is the .../maker/bin/ directory and not the .../maker/ or .../maker/src/ directory that you added to the PATH. Thanks, Carson On 1/14/14, 7:22 AM, "Mark Yandell" wrote: > > >Mark Yandell >Professor of Human Genetics >H.A. & Edna Benning Presidential Endowed Chair >Eccles Institute of Human Genetics >University of Utah >15 North 2030 East, Room 2100 >Salt Lake City, UT 84112-5330 >ph:801-587-7707 > >________________________________________ >From: Nandita Pasari [nandita at icgeb.res.in] >Sent: Tuesday, January 14, 2014 5:09 AM >To: Mark Yandell >Subject: Issues regarding maker > >Respected Sir, > >I have been trying to install maker and the configuration it is showing >on installation is ok. >when I type maker -h it shows > > >"No command 'maker' found, did you mean: > Command 'wmaker' from package 'wmaker-common' (universe) > Command 'makeg' from package 'xutils-dev' (main) > Command 'make' from package 'make' (main) > maker: command not found" > >Also I have set the path in nano ./bashrc profile still it is not running. >Can you please help me out. > > >Nandita Pasari >Pre Doctoral Fellow >Synthetic Biology and Biofuels Group >ICGEB >New Delhi From amelia.ireland at gmod.org Tue Jan 14 14:55:20 2014 From: amelia.ireland at gmod.org (Amelia Ireland) Date: Tue, 14 Jan 2014 12:55:20 -0800 Subject: [maker-devel] GMOD Malaysia 2014 Message-ID: GMOD is pleased to announce GMOD Malaysia, a three-day training course to be held in Kuala Lumpur, Malaysia, on February 26-28, 2014. http://gmod.org/wiki/GMOD_Malaysia_2014 GMOD Malaysia offers an introduction to, and training in, the bioinformatics software offered by the Generic Model Organism Database project. Over three days, participants will learn about GMOD's free, open-source tools for visualising, storing, and disseminating genetic and genomic data. These include: - Galaxy analysis pipeline - GBrowse and JBrowse genome browsers - InterMine data warehouse - MAKER and MAKER-P genome annotation pipelines - Tripal website generator and database interface - Chado database schema Instruction is by experienced instructors and developers with deep knowledge of the tools and their applications. By the end of the course, participants will have hands-on experience of setting up and using core components needed for a modern genomics project. Application deadline: 12 February 2014. For more information, and to apply, please visit the website: http://gmod.org/wiki/GMOD_Malaysia_2014 Please spread the word to anyone who may be interested! GMOD Malaysia 2014 is made possible by the extremely generous support of National Evolutionary Synthesis Center (NESCent, http://nescent.org) and the NESCent Ambassador program. NESCent promotes the synthesis of information, concepts and knowledge to address significant, emerging, or novel questions in evolutionary science and its applications; it supports research and education across disciplinary, institutional, geographic, and demographic boundaries. The NESCent Ambassador Program is NESCent?s primary international outreach program, and is supported by a three-year grant from the NSF. GMOD is very grateful to be a beneficiary of this generous program. Thanks! -- Amelia Ireland GMOD Community Support Generic Model Organism Database project http://gmod.org || @gmodproject -------------- next part -------------- An HTML attachment was scrubbed... URL: From prakhar_aaidu16 at hotmail.com Thu Jan 16 00:12:24 2014 From: prakhar_aaidu16 at hotmail.com (PRAKHAR gaur) Date: Thu, 16 Jan 2014 11:42:24 +0530 Subject: [maker-devel] Maker Virtual Machine Image Message-ID: Hello, I am having multiple dependency related and library version issues installing Maker 2.28 on Debian 7 So would like to ask if there is a easy way out?Is there a vm image with Maker available for download from somewhere? I know about the AWS ami used for 2103 GMOD Maker Tutorial, ami-ea661f83. But wanted to use the vm locally, which is not possible with AWS ami's. Any help / pointer in right direction is appreciated. Regards,--Prakhar GaurSenior Research FellowMicrobiology @ Indian Agriculture Research InstituteNew Delhi, IN. -------------- next part -------------- An HTML attachment was scrubbed... URL: From prakhar_aaidu16 at hotmail.com Thu Jan 16 00:43:23 2014 From: prakhar_aaidu16 at hotmail.com (PRAKHAR gaur) Date: Thu, 16 Jan 2014 12:13:23 +0530 Subject: [maker-devel] Maker Virtual Machine Image In-Reply-To: References: , Message-ID: Hello Dan, The sample is a Prokaryotic genome, assembly size is greater than 6Mbp (rules out Web-Maker) Maker 2.30 is beta release hence did not try it out, will do that now. I have installed Maker before and its not a trivial task, hence the question about Virtual Machine. Since I am already struggling with installing Prokka and DIYA. If a virtual machine is available it would save ~ 3 days time, otherwise I will install from bottom up! Regards,--Prakhar GaurSenior Research FellowMicrobiology @ Indian Agriculture Research InstituteNew Delhi, IN. From: ddvanderpool at gmail.com Subject: Re: [maker-devel] Maker Virtual Machine Image Date: Wed, 15 Jan 2014 23:17:30 -0700 To: prakhar_aaidu16 at hotmail.com Hello Prakhar, Is there a reason you have not tried installing 2.30? I have it running on Debian 7 and it was fairly straight forward. Additionally, the multithreading speeds everything up so that I can annotate several smaller eukaryote genomes in one day. which dependencies and libraries are the problem? Dan VanderpoolUniversity of MontanaMcCutcheon LabHealth Sciences 304Missoula, MT 59812Office: 406-243-6106ddvanderpool at gmail.com On Jan 15, 2014, at 11:12 PM, PRAKHAR gaur wrote:Hello, I am having multiple dependency related and library version issues installing Maker 2.28 on Debian 7 So would like to ask if there is a easy way out?Is there a vm image with Maker available for download from somewhere? I know about the AWS ami used for 2103 GMOD Maker Tutorial, ami-ea661f83. But wanted to use the vm locally, which is not possible with AWS ami's. Any help / pointer in right direction is appreciated. Regards,--Prakhar GaurSenior Research FellowMicrobiology @ Indian Agriculture Research InstituteNew Delhi, IN._______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org -------------- next part -------------- An HTML attachment was scrubbed... URL: From barry.utah at gmail.com Thu Jan 16 08:16:18 2014 From: barry.utah at gmail.com (Barry Moore) Date: Thu, 16 Jan 2014 07:16:18 -0700 Subject: [maker-devel] Maker Virtual Machine Image In-Reply-To: References: Message-ID: Hi Prakar, We don't regularly create VMs of MAKER, but if you can give us some details on the install issues and well help you sort through them and fix any problems that you may have uncovered. Barry On Jan 15, 2014, at 11:12 PM, PRAKHAR gaur wrote: > Hello, > > I am having multiple dependency related and library version issues installing Maker 2.28 on Debian 7 > > So would like to ask if there is a easy way out? > Is there a vm image with Maker available for download from somewhere? > > I know about the AWS ami used for 2103 GMOD Maker Tutorial, ami-ea661f83. > > But wanted to use the vm locally, which is not possible with AWS ami's. > > Any help / pointer in right direction is appreciated. > > Regards, > -- > Prakhar Gaur > Senior Research Fellow > Microbiology @ Indian Agriculture Research Institute > New Delhi, IN. > _______________________________________________ > maker-devel mailing list > maker-devel at box290.bluehost.com > http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org Barry Moore Research Scientist Dept. of Human Genetics University of Utah Salt Lake City, UT 84112 -------------------------------------------- (801) 585-3543 -------------- next part -------------- An HTML attachment was scrubbed... URL: From saneasheikh at gmail.com Thu Jan 16 04:52:29 2014 From: saneasheikh at gmail.com (Sanea Sheikh) Date: Thu, 16 Jan 2014 11:52:29 +0100 Subject: [maker-devel] Fwd: Problem with re-annotation In-Reply-To: References: Message-ID: Hello Carson Here it is. Sanea On Tue, Jan 14, 2014 at 1:39 AM, Carson Holt wrote: > Hi Sanea, > > There are no snap calls in your results. It?s as if SNAP never even ran. > Did you capture STDERR from your second run? If so can you send it to me. > I just want to see if it even shows SNAP as having run in the progress > reports. > > Thanks, > Carson > > From: Sanea Sheikh > Date: Monday, January 13, 2014 at 2:17 AM > To: > Subject: [maker-devel] Problem with re-annotation > > Hello > > I am using Maker to annotate a genome for which I only have EST data and > some protein data. I ran Maker once using this EST and protein data > (est2genome=1, protein2genome=1). I had the Maker output. I combined all > the GFF files for all the contigs. I used the combined GFF file to train > SNAP which gave me a .hmm file. Now I modified the Maker opts control file. > I provided the hmm file in snap_hmm. I set est2genome=0 and > protein2genome=0. I ran Maker again assuming that now I have trained the > gene predictor and I would have better annotations. But now the output file > that I get does not have Maker annotation. I have attached the control > files and the output file for the re-run so you can have a look and let me > know what I am doing wrong in order to re-annotate the genome using the > output from the previous run. > > Sanea > _______________________________________________ maker-devel mailing list > maker-devel at box290.bluehost.com > http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org > -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- [saneash at milou2 re-run0]$ module load bioinfo-tools [saneash at milou2 re-run0]$ module load maker/2.28 [saneash at milou2 re-run0]$ maker STATUS: Parsing control files... STATUS: Processing and indexing input FASTA files... STATUS: Setting up database for any GFF3 input... A data structure will be created for you at: /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore To access files for individual sequences use the datastore index: /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_master_datastore_index.log STATUS: Now running MAKER... examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C1 Length: 58489 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0 -pa 1 #-------------------------------# doing blastx repeats formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:4 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:4 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:4 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:4 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:4 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:1 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:5 current j:0 j_size:5 current j:1 j_size:5 current j:2 j_size:5 current j:3 j_size:5 current j:4 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C1.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C1.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11053%7Crhogap.for.4526-6082.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.4526-6082.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.4526-6082.Ar_EST_120301b_c11053%7Crhogap.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c268%7Crhogap.for.5511-6995.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.5511-6995.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.5511-6995.Ar_EST_120301b_c268%7Crhogap.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2803%7Cprotein.for.6572-8321.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.6572-8321.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.6572-8321.Ar_EST_120301b_c2803%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18685%7C5.for.10389-12250.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.10389-12250.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.10389-12250.Ar_EST_120301b_c18685%7C5.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20527%7C5.for.11857-13265.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.11857-13265.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.11857-13265.Ar_EST_120301b_c20527%7C5.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c607%7C---NA---.for.12934-14282.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.12934-14282.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.12934-14282.Ar_EST_120301b_c607%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10671%7Cn-acylethanolamine-hydrolyzing.for.13964-15360.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.13964-15360.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.13964-15360.Ar_EST_120301b_c10671%7Cn-acylethanolamine-hydrolyzing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17817%7C26s.for.14494-15869.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.14494-15869.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.14494-15869.Ar_EST_120301b_c17817%7C26s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2291%7Cautophagy.for.15736-17754.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.15736-17754.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.15736-17754.Ar_EST_120301b_c2291%7Cautophagy.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17723%7Ccci.for.17326-18646.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.17326-18646.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.17326-18646.Ar_EST_120301b_c17723%7Ccci.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13159%7Cair9.for.19436-20822.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.19436-20822.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.19436-20822.Ar_EST_120301b_c13159%7Cair9.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11534%7Cair9.for.20126-21431.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.20126-21431.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.20126-21431.Ar_EST_120301b_c11534%7Cair9.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15074%7Cair9.for.20452-21494.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.20452-21494.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.20452-21494.Ar_EST_120301b_c15074%7Cair9.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1253%7Cf-box.for.22970-24212.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.22970-24212.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.22970-24212.Ar_EST_120301b_c1253%7Cf-box.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17132%7Calkylated.for.24491-25995.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.24491-25995.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.24491-25995.Ar_EST_120301b_c17132%7Calkylated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9069%7Cam193219.for.31057-32071.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.31057-32071.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.31057-32071.Ar_EST_120301b_c9069%7Cam193219.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10823%7Ccr05-c1-100-012-f08-.for.33886-35415.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.33886-35415.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.33886-35415.Ar_EST_120301b_c10823%7Ccr05-c1-100-012-f08-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c930%7Cprotein.for.38557-40055.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.38557-40055.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.38557-40055.Ar_EST_120301b_c930%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18260%7Cunq127-.for.40476-41781.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.40476-41781.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.40476-41781.Ar_EST_120301b_c18260%7Cunq127-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2552%7Cprotein.for.48234-49551.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.48234-49551.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.48234-49551.Ar_EST_120301b_c2552%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2497%7Cprotein.for.48058-49397.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.48058-49397.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.48058-49397.Ar_EST_120301b_c2497%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1789%7Cprotein.for.48205-49551.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.48205-49551.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.48205-49551.Ar_EST_120301b_c1789%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18050%7Ccto.for.49972-51260.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.49972-51260.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.49972-51260.Ar_EST_120301b_c18050%7Ccto.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9640%7Cmethyltransferase.for.51502-53111.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.51502-53111.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.51502-53111.Ar_EST_120301b_c9640%7Cmethyltransferase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17917%7Ccht.for.52335-53662.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.52335-53662.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.52335-53662.Ar_EST_120301b_c17917%7Ccht.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16986%7Cvcdc13845.for.55765-57091.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.55765-57091.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.55765-57091.Ar_EST_120301b_c16986%7Cvcdc13845.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 flattening EST clusters doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:36 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:40 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:35 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:65 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:45 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:50 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:34 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:50 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:39 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:30 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088766%7Cgb%7CEFC42427%2E1%7C.for.4953-6967.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.4953-6967.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.4953-6967.gi%7C284088766%7Cgb%7CEFC42427%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083894%7Cgb%7CEFC37592%2E1%7C.for.6309-7884.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.6309-7884.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.6309-7884.gi%7C284083894%7Cgb%7CEFC37592%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089795%7Cgb%7CEFC43450%2E1%7C.for.6219-8277.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.6219-8277.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.6219-8277.gi%7C284089795%7Cgb%7CEFC43450%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097098%7Cgb%7CEFC50725%2E1%7C.for.15836-17505.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.15836-17505.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.15836-17505.gi%7C284097098%7Cgb%7CEFC50725%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095290%7Cgb%7CEFC48921%2E1%7C.for.24561-26053.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.24561-26053.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.24561-26053.gi%7C284095290%7Cgb%7CEFC48921%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085158%7Cgb%7CEFC38844%2E1%7C.for.25336-26753.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.25336-26753.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.25336-26753.gi%7C284085158%7Cgb%7CEFC38844%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096842%7Cgb%7CEFC50469%2E1%7C.for.26367-28540.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.26367-28540.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.26367-28540.gi%7C284096842%7Cgb%7CEFC50469%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081501%7Cgb%7CEFC35480%2E1%7C.for.38104-39098.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.38104-39098.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.38104-39098.gi%7C284081501%7Cgb%7CEFC35480%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085657%7Cgb%7CEFC39339%2E1%7C.for.38104-39098.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.38104-39098.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.38104-39098.gi%7C284085657%7Cgb%7CEFC39339%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.for.41924-44025.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41924-44025.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41924-44025.gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090673%7Cgb%7CEFC44323%2E1%7C.for.41960-43878.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41960-43878.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41960-43878.gi%7C284090673%7Cgb%7CEFC44323%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.for.41960-43902.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41960-43902.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41960-43902.gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094023%7Cgb%7CEFC47658%2E1%7C.for.41957-44109.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41957-44109.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41957-44109.gi%7C284094023%7Cgb%7CEFC47658%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.for.41954-43965.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41954-43965.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41954-43965.gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C464854%7Csp%7CP34108%2E1%7CTBB_NAEGR.for.45443-47597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.gi%7C464854%7Csp%7CP34108%2E1%7CTBB_NAEGR.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086940%7Cgb%7CEFC40613%2E1%7C.for.45578-47603.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45578-47603.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45578-47603.gi%7C284086940%7Cgb%7CEFC40613%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C9737%7Cemb%7CCAA78362%2E1%7C.for.45443-47597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.gi%7C9737%7Cemb%7CCAA78362%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082800%7Cgb%7CEFC36511%2E1%7C.for.45443-47597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.gi%7C284082800%7Cgb%7CEFC36511%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086082%7Cgb%7CEFC39761%2E1%7C.for.45443-47597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.gi%7C284086082%7Cgb%7CEFC39761%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091464%7Cgb%7CEFC45110%2E1%7C.for.45440-47621.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45440-47621.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45440-47621.gi%7C284091464%7Cgb%7CEFC45110%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C15082214%7Cgb%7CAAK84066%2E1%7CAF401641_1.for.45443-46787.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-46787.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-46787.gi%7C15082214%7Cgb%7CAAK84066%2E1%7CAF401641_1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093591%7Cgb%7CEFC47228%2E1%7C.for.45440-47594.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45440-47594.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45440-47594.gi%7C284093591%7Cgb%7CEFC47228%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091812%7Cgb%7CEFC45457%2E1%7C.for.45443-47639.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47639.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47639.gi%7C284091812%7Cgb%7CEFC45457%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C829213%7Cemb%7CCAA56940%2E1%7C.for.45443-47597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.gi%7C829213%7Cemb%7CCAA56940%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083707%7Cgb%7CEFC37407%2E1%7C.for.45449-47648.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45449-47648.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45449-47648.gi%7C284083707%7Cgb%7CEFC37407%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084695%7Cgb%7CEFC38385%2E1%7C.for.45443-47597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.gi%7C284084695%7Cgb%7CEFC38385%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083068%7Cgb%7CEFC36775%2E1%7C.for.45443-47597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.gi%7C284083068%7Cgb%7CEFC36775%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096574%7Cgb%7CEFC50202%2E1%7C.for.48315-49510.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.48315-49510.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.48315-49510.gi%7C284096574%7Cgb%7CEFC50202%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:8 now processing 0 total clusters:8 now processing 0 total clusters:8 now processing 0 total clusters:8 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:8 now processing 0 ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:8 now processing 0 total clusters:8 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:8 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:7 now processing 0 ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:14 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:14 now processing 0 total clusters:14 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.4725-6795.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.4725-6795.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.4725-6795.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.10588-12055.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.10588-12055.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.10588-12055.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.12056-13157.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.12056-13157.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.12056-13157.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.15926-18446.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.15926-18446.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.15926-18446.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.23065-23889.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.23065-23889.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.23065-23889.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.24690-25853.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.24690-25853.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.24690-25853.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.26566-28340.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.26566-28340.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.26566-28340.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.38273-38898.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.38273-38898.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.38273-38898.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.40672-41581.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.40672-41581.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.40672-41581.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.45639-47448.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.45639-47448.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.45639-47448.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.48257-49356.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.48257-49356.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.48257-49356.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.50171-51071.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.50171-51071.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.50171-51071.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.55964-56891.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.55964-56891.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.55964-56891.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.6418-8217.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.6418-8217.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.6418-8217.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.13131-14082.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.13131-14082.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.13131-14082.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.14163-15160.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.14163-15160.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.14163-15160.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.19635-21294.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.19635-21294.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.19635-21294.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.23268-24019.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.23268-24019.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.23268-24019.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.25535-26553.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.25535-26553.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.25535-26553.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.31256-31871.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.31256-31871.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.31256-31871.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.34085-35224.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.34085-35224.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.34085-35224.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.51701-53462.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.51701-53462.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.51701-53462.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C2 Length: 117277 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:103 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:75 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:71 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:65 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:81 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:94 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:87 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:81 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:73 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:80 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C2.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C2.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c507%7Chypothetical.for.1-1394.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.1-1394.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.1-1394.Ar_EST_120301b_c507%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14990%7C---NA---.for.640-1498.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.640-1498.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.640-1498.Ar_EST_120301b_c14990%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5131%7CsT7aVVM011J17071.for.761-2391.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.761-2391.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.761-2391.Ar_EST_120301b_rep_c5131%7CsT7aVVM011J17071.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig47%7Ctransmembrane.for.6436-8329.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.6436-8329.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.6436-8329.120301b_Contig47%7Ctransmembrane.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14084%7Cunnamed.for.7758-9064.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.7758-9064.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.7758-9064.Ar_EST_120301b_c14084%7Cunnamed.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9225%7Ctransmembrane.for.8330-9700.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.8330-9700.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.8330-9700.Ar_EST_120301b_c9225%7Ctransmembrane.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14631%7Chydra.for.8696-9907.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.8696-9907.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.8696-9907.Ar_EST_120301b_c14631%7Chydra.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3024%7Cudp-glucose.for.9676-11591.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.9676-11591.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.9676-11591.Ar_EST_120301b_c3024%7Cudp-glucose.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig990%7Cmitochondrial.for.10856-12335.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.10856-12335.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.10856-12335.120301b_Contig990%7Cmitochondrial.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1211%7Cgcn5-related.for.11805-13456.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.11805-13456.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.11805-13456.Ar_EST_120301b_c1211%7Cgcn5-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16722%7Cct752454.for.13015-14306.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.13015-14306.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.13015-14306.Ar_EST_120301b_c16722%7Cct752454.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig224%7Cprotein.for.15919-17709.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.15919-17709.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.15919-17709.120301b_Contig224%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3881%7Cprotein.for.16047-17501.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.16047-17501.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.16047-17501.Ar_EST_120301b_c3881%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2433%7Cgpgc_est03437.for.17128-18491.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.17128-18491.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.17128-18491.Ar_EST_120301b_c2433%7Cgpgc_est03437.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13343%7Cdioscorea.for.17305-18618.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.17305-18618.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.17305-18618.Ar_EST_120301b_c13343%7Cdioscorea.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11728%7Cpiggybac-derived.for.18145-19476.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.18145-19476.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.18145-19476.Ar_EST_120301b_c11728%7Cpiggybac-derived.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8045%7Chypothetical.for.22621-24232.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.22621-24232.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.22621-24232.Ar_EST_120301b_c8045%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12485%7Ch019c03.for.22501-23565.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.22501-23565.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.22501-23565.Ar_EST_120301b_c12485%7Ch019c03.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16884%7Cheat-shocked.for.24359-25393.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.24359-25393.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.24359-25393.Ar_EST_120301b_c16884%7Cheat-shocked.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5131%7CsT7aVVM011J17071.for.25415-26610.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.25415-26610.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.25415-26610.Ar_EST_120301b_rep_c5131%7CsT7aVVM011J17071.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19746%7Cglycoside.for.26440-27757.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.26440-27757.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.26440-27757.Ar_EST_120301b_c19746%7Cglycoside.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig676%7Cglycoside.for.26298-28164.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.26298-28164.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.26298-28164.120301b_Contig676%7Cglycoside.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13860%7Cprotein.for.32010-33342.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.32010-33342.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.32010-33342.Ar_EST_120301b_c13860%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c199%7Cinterferon-related.for.33113-34832.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.33113-34832.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.33113-34832.Ar_EST_120301b_c199%7Cinterferon-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig826%7Cintegral.for.34950-37418.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.34950-37418.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.34950-37418.120301b_Contig826%7Cintegral.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3644%7Crasgef.for.40362-42405.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.40362-42405.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.40362-42405.Ar_EST_120301b_c3644%7Crasgef.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2583%7Crasgef.for.39147-41164.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.39147-41164.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.39147-41164.Ar_EST_120301b_c2583%7Crasgef.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12768%7Crasgef.for.41845-43175.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.41845-43175.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.41845-43175.Ar_EST_120301b_c12768%7Crasgef.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16000%7Cprotein.for.42497-43802.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.42497-43802.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.42497-43802.Ar_EST_120301b_c16000%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12166%7Cdedicator.for.43827-45754.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.43827-45754.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.43827-45754.Ar_EST_120301b_c12166%7Cdedicator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12629%7Cpeptidyl-prolyl.for.46674-48006.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46674-48006.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46674-48006.Ar_EST_120301b_c12629%7Cpeptidyl-prolyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4714%7Crac.for.50959-53161.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.50959-53161.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.50959-53161.Ar_EST_120301b_rep_c4714%7Crac.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11446%7C40s.for.51193-52314.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51193-52314.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51193-52314.Ar_EST_120301b_rep_c11446%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7175%7Crac-beta.for.51491-53136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51491-53136.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51491-53136.Ar_EST_120301b_rep_c7175%7Crac-beta.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17186%7Cprotein.for.52528-54217.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52528-54217.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52528-54217.Ar_EST_120301b_c17186%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17524%7Ccto.for.59145-60473.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.59145-60473.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.59145-60473.Ar_EST_120301b_c17524%7Ccto.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c989%7Cprotease.for.60132-61476.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.60132-61476.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.60132-61476.Ar_EST_120301b_c989%7Cprotease.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7983%7Cendonuclease.for.60911-62507.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.60911-62507.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.60911-62507.Ar_EST_120301b_c7983%7Cendonuclease.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20027%7Cgtp-binding.for.62798-64102.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.62798-64102.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.62798-64102.Ar_EST_120301b_c20027%7Cgtp-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18683%7Cg-protein.for.62454-63870.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.62454-63870.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.62454-63870.Ar_EST_120301b_c18683%7Cg-protein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16992%7Cnovel.for.63760-65049.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.63760-65049.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.63760-65049.Ar_EST_120301b_c16992%7Cnovel.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10583%7Clipase.for.68765-70207.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.68765-70207.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.68765-70207.Ar_EST_120301b_c10583%7Clipase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11588%7C---NA---.for.69933-71292.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.69933-71292.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.69933-71292.Ar_EST_120301b_c11588%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1963%7Cprotein.for.70510-71966.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.70510-71966.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.70510-71966.Ar_EST_120301b_c1963%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20347%7Cpeptidase.for.74316-75861.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.74316-75861.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.74316-75861.Ar_EST_120301b_c20347%7Cpeptidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20105%7Cserine.for.73290-75800.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.73290-75800.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.73290-75800.Ar_EST_120301b_c20105%7Cserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13314%7Ckaan-.for.76588-77926.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.76588-77926.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.76588-77926.Ar_EST_120301b_c13314%7Ckaan-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17187%7Cljna722tf.for.78662-79915.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.78662-79915.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.78662-79915.Ar_EST_120301b_c17187%7Cljna722tf.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14075%7Cipt.for.80654-82283.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.80654-82283.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.80654-82283.Ar_EST_120301b_c14075%7Cipt.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2151%7Cegf-like.for.80564-82712.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.80564-82712.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.80564-82712.Ar_EST_120301b_c2151%7Cegf-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15871%7Cgm-r1089.for.81864-83119.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.81864-83119.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.81864-83119.Ar_EST_120301b_c15871%7Cgm-r1089.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3019%7Crcc1.for.82360-83500.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.82360-83500.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.82360-83500.Ar_EST_120301b_c3019%7Crcc1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18457%7Cregulator.for.82761-84301.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.82761-84301.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.82761-84301.Ar_EST_120301b_c18457%7Cregulator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2002%7Cmitochondrial.for.84168-85833.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.84168-85833.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.84168-85833.Ar_EST_120301b_c2002%7Cmitochondrial.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16158%7Cthioredoxin.for.86999-88287.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.86999-88287.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.86999-88287.Ar_EST_120301b_c16158%7Cthioredoxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10238%7Ccto.for.88444-90125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.88444-90125.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.88444-90125.Ar_EST_120301b_c10238%7Ccto.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c525%7Ctranscription.for.89357-91075.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.89357-91075.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.89357-91075.Ar_EST_120301b_c525%7Ctranscription.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10630%7Cpredicted.for.90701-91993.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.90701-91993.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.90701-91993.Ar_EST_120301b_c10630%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3446%7Cwd.for.94044-95698.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.94044-95698.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.94044-95698.Ar_EST_120301b_c3446%7Cwd.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2740%7Cbromodomain.for.95217-96781.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.95217-96781.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.95217-96781.Ar_EST_120301b_c2740%7Cbromodomain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14182%7Cwd40.for.95143-96256.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.95143-96256.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.95143-96256.Ar_EST_120301b_c14182%7Cwd40.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2955%7Cwd.for.96139-98603.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.96139-98603.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.96139-98603.Ar_EST_120301b_c2955%7Cwd.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15897%7Cwd.for.96376-97474.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.96376-97474.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.96376-97474.Ar_EST_120301b_c15897%7Cwd.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1239%7C---NA---.for.98316-99620.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.98316-99620.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.98316-99620.Ar_EST_120301b_c1239%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1149%7Cbeta-galactosidase.for.101237-104546.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.101237-104546.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.101237-104546.Ar_EST_120301b_c1149%7Cbeta-galactosidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18482%7C---NA---.for.103754-105055.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.103754-105055.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.103754-105055.Ar_EST_120301b_c18482%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17585%7Csuppressor.for.104275-105642.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.104275-105642.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.104275-105642.Ar_EST_120301b_c17585%7Csuppressor.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9748%7Cphytanoyl-.for.105274-106624.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.105274-106624.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.105274-106624.Ar_EST_120301b_c9748%7Cphytanoyl-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16625%7Cixodes.for.108291-109796.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.108291-109796.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.108291-109796.Ar_EST_120301b_c16625%7Cixodes.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig957%7Cprolyl.for.111713-113469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.111713-113469.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.111713-113469.120301b_Contig957%7Cprolyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c341%7Cprolyl.for.112916-114615.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.112916-114615.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.112916-114615.Ar_EST_120301b_c341%7Cprolyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19609%7C60s.for.114043-115231.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.114043-115231.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.114043-115231.Ar_EST_120301b_rep_c19609%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c363%7Cprotein.for.115090-116629.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.115090-116629.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.115090-116629.Ar_EST_120301b_c363%7Cprotein.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:52 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:52 now processing 0 total clusters:52 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:52 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:52 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:72 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:65 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:74 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:81 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:70 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:73 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:60 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:72 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:77 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:58 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094603%7Cgb%7CEFC48237%2E1%7C.for.9805-11564.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.9805-11564.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.9805-11564.gi%7C284094603%7Cgb%7CEFC48237%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083050%7Cgb%7CEFC36758%2E1%7C.for.16040-17692.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.16040-17692.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.16040-17692.gi%7C284083050%7Cgb%7CEFC36758%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096069%7Cgb%7CEFC49698%2E1%7C.for.16040-17659.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.16040-17659.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.16040-17659.gi%7C284096069%7Cgb%7CEFC49698%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091333%7Cgb%7CEFC44980%2E1%7C.for.27718-29412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.27718-29412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.27718-29412.gi%7C284091333%7Cgb%7CEFC44980%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089590%7Cgb%7CEFC43247%2E1%7C.for.39144-41128.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.39144-41128.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.39144-41128.gi%7C284089590%7Cgb%7CEFC43247%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089589%7Cgb%7CEFC43246%2E1%7C.for.39144-41128.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.39144-41128.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.39144-41128.gi%7C284089589%7Cgb%7CEFC43246%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081155%7Cgb%7CEFC35313%2E1%7C.for.46491-47770.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47770.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47770.gi%7C284081155%7Cgb%7CEFC35313%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092983%7Cgb%7CEFC46623%2E1%7C.for.46491-47770.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47770.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47770.gi%7C284092983%7Cgb%7CEFC46623%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093592%7Cgb%7CEFC47229%2E1%7C.for.46503-47767.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46503-47767.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46503-47767.gi%7C284093592%7Cgb%7CEFC47229%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089692%7Cgb%7CEFC43348%2E1%7C.for.46503-47779.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46503-47779.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46503-47779.gi%7C284089692%7Cgb%7CEFC43348%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088464%7Cgb%7CEFC42127%2E1%7C.for.46491-47770.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47770.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47770.gi%7C284088464%7Cgb%7CEFC42127%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094883%7Cgb%7CEFC48516%2E1%7C.for.46497-47776.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46497-47776.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46497-47776.gi%7C284094883%7Cgb%7CEFC48516%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095464%7Cgb%7CEFC49095%2E1%7C.for.46491-47767.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47767.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47767.gi%7C284095464%7Cgb%7CEFC49095%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090503%7Cgb%7CEFC44154%2E1%7C.for.46491-47770.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47770.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47770.gi%7C284090503%7Cgb%7CEFC44154%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086458%7Cgb%7CEFC40134%2E1%7C.for.46491-47773.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47773.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47773.gi%7C284086458%7Cgb%7CEFC40134%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094068%7Cgb%7CEFC47703%2E1%7C.for.51383-53046.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51383-53046.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51383-53046.gi%7C284094068%7Cgb%7CEFC47703%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094875%7Cgb%7CEFC48508%2E1%7C.for.50957-53136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.50957-53136.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.50957-53136.gi%7C284094875%7Cgb%7CEFC48508%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094832%7Cgb%7CEFC48465%2E1%7C.for.50972-53136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.50972-53136.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.50972-53136.gi%7C284094832%7Cgb%7CEFC48465%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088361%7Cgb%7CEFC42025%2E1%7C.for.51365-53046.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51365-53046.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51365-53046.gi%7C284088361%7Cgb%7CEFC42025%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090070%7Cgb%7CEFC43724%2E1%7C.for.51362-53094.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51362-53094.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51362-53094.gi%7C284090070%7Cgb%7CEFC43724%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085317%7Cgb%7CEFC39002%2E1%7C.for.52410-54205.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52410-54205.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52410-54205.gi%7C284085317%7Cgb%7CEFC39002%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081068%7Cgb%7CEFC35282%2E1%7C.for.52797-54004.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52797-54004.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52797-54004.gi%7C284081068%7Cgb%7CEFC35282%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.for.52776-53791.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52776-53791.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52776-53791.gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091625%7Cgb%7CEFC45271%2E1%7C.for.52410-54199.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52410-54199.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52410-54199.gi%7C284091625%7Cgb%7CEFC45271%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096422%7Cgb%7CEFC50050%2E1%7C.for.52410-54208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52410-54208.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52410-54208.gi%7C284096422%7Cgb%7CEFC50050%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097050%7Cgb%7CEFC50677%2E1%7C.for.52416-54202.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52416-54202.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52416-54202.gi%7C284097050%7Cgb%7CEFC50677%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090562%7Cgb%7CEFC44213%2E1%7C.for.66633-67624.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66633-67624.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66633-67624.gi%7C284090562%7Cgb%7CEFC44213%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092309%7Cgb%7CEFC45952%2E1%7C.for.66693-67995.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66693-67995.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66693-67995.gi%7C284092309%7Cgb%7CEFC45952%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090708%7Cgb%7CEFC44358%2E1%7C.for.66516-67624.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66516-67624.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66516-67624.gi%7C284090708%7Cgb%7CEFC44358%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093840%7Cgb%7CEFC47476%2E1%7C.for.66690-67615.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66690-67615.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66690-67615.gi%7C284093840%7Cgb%7CEFC47476%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081311%7Cgb%7CEFC35385%2E1%7C.for.66618-67624.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66618-67624.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66618-67624.gi%7C284081311%7Cgb%7CEFC35385%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082866%7Cgb%7CEFC36576%2E1%7C.for.70396-71585.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.70396-71585.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.70396-71585.gi%7C284082866%7Cgb%7CEFC36576%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082849%7Cgb%7CEFC36560%2E1%7C.for.73129-75157.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.73129-75157.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.73129-75157.gi%7C284082849%7Cgb%7CEFC36560%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.for.80650-81731.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.80650-81731.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.80650-81731.gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089151%7Cgb%7CEFC42810%2E1%7C.for.87117-88275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.87117-88275.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.87117-88275.gi%7C284089151%7Cgb%7CEFC42810%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095219%7Cgb%7CEFC48850%2E1%7C.for.111697-114629.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.111697-114629.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.111697-114629.gi%7C284095219%7Cgb%7CEFC48850%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086650%7Cgb%7CEFC40325%2E1%7C.for.115979-117015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.115979-117015.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.115979-117015.gi%7C284086650%7Cgb%7CEFC40325%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:9 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:9 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:7 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:7 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:26 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.954-2217.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.954-2217.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.954-2217.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.9875-14112.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.9875-14112.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.9875-14112.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.16118-18418.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.16118-18418.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.16118-18418.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.22820-24032.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.22820-24032.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.22820-24032.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.51156-52963.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.51156-52963.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.51156-52963.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.59344-62307.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.59344-62307.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.59344-62307.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.68964-70007.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.68964-70007.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.68964-70007.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.70132-71766.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.70132-71766.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.70132-71766.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.76787-77726.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.76787-77726.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.76787-77726.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.78861-79715.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.78861-79715.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.78861-79715.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.84367-85636.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.84367-85636.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.84367-85636.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.94243-98403.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.94243-98403.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.94243-98403.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.98513-99420.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.98513-99420.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.98513-99420.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.101436-105465.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.101436-105465.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.101436-105465.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.105473-106424.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.105473-106424.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.105473-106424.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.115289-116429.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.115289-116429.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.115289-116429.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.6631-9707.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.6631-9707.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.6631-9707.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.26497-27964.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.26497-27964.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.26497-27964.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.32196-33142.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.32196-33142.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.32196-33142.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.35149-37218.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.35149-37218.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.35149-37218.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.39346-43602.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.39346-43602.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.39346-43602.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.44026-45564.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.44026-45564.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.44026-45564.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.46690-47806.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.46690-47806.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.46690-47806.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.52615-54017.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.52615-54017.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.52615-54017.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.62650-64855.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.62650-64855.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.62650-64855.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.66715-67795.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.66715-67795.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.66715-67795.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.73328-75726.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.73328-75726.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.73328-75726.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.80763-84101.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.80763-84101.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.80763-84101.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.87198-88087.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.87198-88087.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.87198-88087.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.88643-90875.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.88643-90875.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.88643-90875.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.90900-91793.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.90900-91793.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.90900-91793.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.108490-109596.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.108490-109596.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.108490-109596.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.111879-114429.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.111879-114429.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.111879-114429.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.116098-116885.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.116098-116885.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.116098-116885.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C4 Length: 65381 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C4.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C4.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10892%7C0082817.for.1-1025.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.1-1025.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.1-1025.Ar_EST_120301b_c10892%7C0082817.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12497%7Cpl08003b1g07.for.464-1964.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.464-1964.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.464-1964.Ar_EST_120301b_c12497%7Cpl08003b1g07.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9064%7Chypothetical.for.1180-2583.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.1180-2583.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.1180-2583.Ar_EST_120301b_c9064%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14018%7Cui-s-gu1-aee-p-13-0-.for.2150-3327.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.2150-3327.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.2150-3327.Ar_EST_120301b_c14018%7Cui-s-gu1-aee-p-13-0-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16392%7Ctm2.for.3881-5011.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3881-5011.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3881-5011.Ar_EST_120301b_rep_c16392%7Ctm2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18540%7Cpredicted.for.4013-5052.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.4013-5052.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.4013-5052.Ar_EST_120301b_rep_c18540%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19988%7Ctm2.for.4002-4998.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.4002-4998.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.4002-4998.Ar_EST_120301b_rep_c19988%7Ctm2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17214%7Ctm2.for.3986-5028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3986-5028.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3986-5028.Ar_EST_120301b_rep_c17214%7Ctm2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15650%7Cpredicted.for.3969-4990.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3969-4990.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3969-4990.Ar_EST_120301b_rep_c15650%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7924%7Cpredicted.for.3983-5062.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3983-5062.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3983-5062.Ar_EST_120301b_rep_c7924%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6312%7Cribosomal.for.3930-4999.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3930-4999.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3930-4999.Ar_EST_120301b_rep_c6312%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4538%7Ctm2.for.3881-5023.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3881-5023.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3881-5023.Ar_EST_120301b_rep_c4538%7Ctm2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13709%7Cintegrator.for.6912-8195.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.6912-8195.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.6912-8195.Ar_EST_120301b_c13709%7Cintegrator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9675%7Cculex.for.9178-10584.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.9178-10584.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.9178-10584.Ar_EST_120301b_c9675%7Cculex.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c257%7Cqg_abcdi.for.9988-11249.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.9988-11249.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.9988-11249.Ar_EST_120301b_c257%7Cqg_abcdi.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8616%7Cclp.for.16774-18142.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.16774-18142.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.16774-18142.Ar_EST_120301b_rep_c8616%7Cclp.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c673%7Ccathepsin.for.22385-24283.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.22385-24283.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.22385-24283.Ar_EST_120301b_c673%7Ccathepsin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16839%7Cn-acetylglucosaminyl-phosphatidylinositol.for.24238-25543.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.24238-25543.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.24238-25543.Ar_EST_120301b_c16839%7Cn-acetylglucosaminyl-phosphatidylinositol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13622%7Cpredicted.for.27404-28719.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.27404-28719.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.27404-28719.Ar_EST_120301b_c13622%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3407%7Cabc.for.28182-30134.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.28182-30134.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.28182-30134.Ar_EST_120301b_c3407%7Cabc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13324%7Cpeptidase.for.29844-31104.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.29844-31104.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.29844-31104.Ar_EST_120301b_c13324%7Cpeptidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17579%7Ccafy.for.30948-32538.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.30948-32538.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.30948-32538.Ar_EST_120301b_c17579%7Ccafy.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17883%7Cme1-0071p-a159-f12-.for.32347-33734.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.32347-33734.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.32347-33734.Ar_EST_120301b_c17883%7Cme1-0071p-a159-f12-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c321%7Crho.for.33136-34435.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.33136-34435.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.33136-34435.Ar_EST_120301b_c321%7Crho.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1291%7Cgolgin.for.33807-35294.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.33807-35294.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.33807-35294.120301b_Contig1291%7Cgolgin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8512%7Crho.for.34096-36128.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.34096-36128.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.34096-36128.Ar_EST_120301b_c8512%7Crho.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4149%7Ccathepsin.for.36731-38881.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.36731-38881.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.36731-38881.Ar_EST_120301b_rep_c4149%7Ccathepsin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13879%7Ccathepsin.for.36811-38313.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.36811-38313.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.36811-38313.Ar_EST_120301b_rep_c13879%7Ccathepsin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig493%7Cgut.for.37440-38856.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.37440-38856.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.37440-38856.120301b_Contig493%7Cgut.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19441%7C40s.for.37322-38430.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.37322-38430.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.37322-38430.Ar_EST_120301b_rep_c19441%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6027%7Ccysteine.for.36676-38177.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.36676-38177.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.36676-38177.Ar_EST_120301b_rep_c6027%7Ccysteine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10144%7Ccathepsin.for.37675-38749.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.37675-38749.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.37675-38749.Ar_EST_120301b_rep_c10144%7Ccathepsin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12182%7Cdigestive.for.36933-38320.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.36933-38320.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.36933-38320.Ar_EST_120301b_rep_c12182%7Cdigestive.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1163%7Cprotein.for.40718-42567.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.40718-42567.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.40718-42567.120301b_Contig1163%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c335%7Cglucosamine-6-phosphate.for.42267-44759.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.42267-44759.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.42267-44759.Ar_EST_120301b_c335%7Cglucosamine-6-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13169%7Cglucosamine-6-phosphate.for.42266-43240.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.42266-43240.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.42266-43240.Ar_EST_120301b_c13169%7Cglucosamine-6-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12559%7Cendocytosis.for.45717-47004.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.45717-47004.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.45717-47004.Ar_EST_120301b_c12559%7Cendocytosis.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4411%7Cfyve-type.for.46516-48423.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.46516-48423.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.46516-48423.Ar_EST_120301b_rep_c4411%7Cfyve-type.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13558%7Ccomm.for.50698-52032.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.50698-52032.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.50698-52032.Ar_EST_120301b_c13558%7Ccomm.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15742%7Ctrna.for.52178-53369.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.52178-53369.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.52178-53369.Ar_EST_120301b_c15742%7Ctrna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16117%7Csmall.for.53247-54540.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.53247-54540.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.53247-54540.Ar_EST_120301b_c16117%7Csmall.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17565%7Cconserved.for.63969-65310.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.63969-65310.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.63969-65310.Ar_EST_120301b_c17565%7Cconserved.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:36 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:36 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:42 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:48 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:46 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:50 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:42 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:31 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090220%7Cgb%7CEFC43873%2E1%7C.for.18520-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18520-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18520-19886.gi%7C284090220%7Cgb%7CEFC43873%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085812%7Cgb%7CEFC39493%2E1%7C.for.18466-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18466-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18466-19886.gi%7C284085812%7Cgb%7CEFC39493%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095573%7Cgb%7CEFC49203%2E1%7C.for.18523-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18523-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18523-19886.gi%7C284095573%7Cgb%7CEFC49203%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092862%7Cgb%7CEFC46502%2E1%7C.for.18535-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18535-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18535-19886.gi%7C284092862%7Cgb%7CEFC46502%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090872%7Cgb%7CEFC44522%2E1%7C.for.18538-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18538-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18538-19886.gi%7C284090872%7Cgb%7CEFC44522%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081627%7Cgb%7CEFC35562%2E1%7C.for.18802-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18802-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18802-19886.gi%7C284081627%7Cgb%7CEFC35562%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095689%7Cgb%7CEFC49319%2E1%7C.for.18511-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18511-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18511-19886.gi%7C284095689%7Cgb%7CEFC49319%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090598%7Cgb%7CEFC44249%2E1%7C.for.18508-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18508-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18508-19886.gi%7C284090598%7Cgb%7CEFC44249%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092337%7Cgb%7CEFC45979%2E1%7C.for.18523-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18523-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18523-19886.gi%7C284092337%7Cgb%7CEFC45979%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087750%7Cgb%7CEFC41418%2E1%7C.for.18466-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18466-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18466-19886.gi%7C284087750%7Cgb%7CEFC41418%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097171%7Cgb%7CEFC50798%2E1%7C.for.18511-19877.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18511-19877.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18511-19877.gi%7C284097171%7Cgb%7CEFC50798%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096980%7Cgb%7CEFC50607%2E1%7C.for.18523-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18523-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18523-19886.gi%7C284096980%7Cgb%7CEFC50607%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082060%7Cgb%7CEFC35846%2E1%7C.for.18706-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18706-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18706-19886.gi%7C284082060%7Cgb%7CEFC35846%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089921%7Cgb%7CEFC43576%2E1%7C.for.18469-19655.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18469-19655.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18469-19655.gi%7C284089921%7Cgb%7CEFC43576%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090604%7Cgb%7CEFC44255%2E1%7C.for.18511-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18511-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18511-19886.gi%7C284090604%7Cgb%7CEFC44255%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093718%7Cgb%7CEFC47355%2E1%7C.for.18505-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18505-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18505-19886.gi%7C284093718%7Cgb%7CEFC47355%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087888%7Cgb%7CEFC41555%2E1%7C.for.18511-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18511-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18511-19886.gi%7C284087888%7Cgb%7CEFC41555%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080970%7Cgb%7CEFC35250%2E1%7C.for.23211-24283.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.23211-24283.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.23211-24283.gi%7C284080970%7Cgb%7CEFC35250%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091231%7Cgb%7CEFC44879%2E1%7C.for.22743-24259.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.22743-24259.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.22743-24259.gi%7C284091231%7Cgb%7CEFC44879%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096232%7Cgb%7CEFC49860%2E1%7C.for.24093-26257.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.24093-26257.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.24093-26257.gi%7C284096232%7Cgb%7CEFC49860%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090699%7Cgb%7CEFC44349%2E1%7C.for.27429-30997.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.27429-30997.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.27429-30997.gi%7C284090699%7Cgb%7CEFC44349%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095545%7Cgb%7CEFC49175%2E1%7C.for.28112-31000.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.28112-31000.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.28112-31000.gi%7C284095545%7Cgb%7CEFC49175%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082178%7Cgb%7CEFC35938%2E1%7C.for.38304-39589.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.38304-39589.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.38304-39589.gi%7C284082178%7Cgb%7CEFC35938%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087427%7Cgb%7CEFC41097%2E1%7C.for.38304-39589.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.38304-39589.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.38304-39589.gi%7C284087427%7Cgb%7CEFC41097%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092869%7Cgb%7CEFC46509%2E1%7C.for.40475-43005.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.40475-43005.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.40475-43005.gi%7C284092869%7Cgb%7CEFC46509%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094373%7Cgb%7CEFC48007%2E1%7C.for.41096-42963.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.41096-42963.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.41096-42963.gi%7C284094373%7Cgb%7CEFC48007%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096359%7Cgb%7CEFC49987%2E1%7C.for.42289-45022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.42289-45022.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.42289-45022.gi%7C284096359%7Cgb%7CEFC49987%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090005%7Cgb%7CEFC43659%2E1%7C.for.46531-48269.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.46531-48269.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.46531-48269.gi%7C284090005%7Cgb%7CEFC43659%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087223%7Cgb%7CEFC40894%2E1%7C.for.50687-52053.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.50687-52053.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.50687-52053.gi%7C284087223%7Cgb%7CEFC40894%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080992%7Cgb%7CEFC35256%2E1%7C.for.53422-54539.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.53422-54539.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.53422-54539.gi%7C284080992%7Cgb%7CEFC35256%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.55918-58235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55918-58235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55918-58235.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.for.55918-58208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55918-58208.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55918-58208.gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.for.55927-58211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55927-58211.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55927-58211.gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.for.55918-57080.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55918-57080.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55918-57080.gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.for.55963-57080.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55963-57080.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55963-57080.gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.for.55930-57101.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55930-57101.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55930-57101.gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.for.55918-58214.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55918-58214.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55918-58214.gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.for.55843-58235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55843-58235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55843-58235.gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090146%7Cgb%7CEFC43799%2E1%7C.for.55921-58211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55921-58211.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55921-58211.gi%7C284090146%7Cgb%7CEFC43799%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.for.55927-58559.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55927-58559.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55927-58559.gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.for.55873-58295.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55873-58295.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55873-58295.gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.for.55870-58211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55870-58211.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55870-58211.gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.for.55798-58208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55798-58208.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55798-58208.gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.for.55996-56951.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55996-56951.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55996-56951.gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086531%7Cgb%7CEFC40207%2E1%7C.for.55927-57146.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55927-57146.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55927-57146.gi%7C284086531%7Cgb%7CEFC40207%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.for.55834-58217.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55834-58217.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55834-58217.gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090143%7Cgb%7CEFC43796%2E1%7C.for.55921-58211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55921-58211.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55921-58211.gi%7C284090143%7Cgb%7CEFC43796%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.for.55930-58211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55930-58211.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55930-58211.gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080808%7Cgb%7CEFC35194%2E1%7C.for.55927-57038.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55927-57038.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55927-57038.gi%7C284080808%7Cgb%7CEFC35194%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.for.55963-57038.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55963-57038.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55963-57038.gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:11 now processing 0 total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:11 now processing 0 ...processing 0 of 17 ...processing 1 of 17 ...processing 2 of 17 ...processing 3 of 17 ...processing 4 of 17 ...processing 5 of 17 ...processing 6 of 17 ...processing 7 of 17 ...processing 8 of 17 ...processing 9 of 17 ...processing 10 of 17 ...processing 11 of 17 ...processing 12 of 17 ...processing 13 of 17 ...processing 14 of 17 ...processing 15 of 17 ...processing 16 of 17 total clusters:11 now processing 0 total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 total clusters:11 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 15 ...processing 1 of 15 ...processing 2 of 15 ...processing 3 of 15 ...processing 4 of 15 ...processing 5 of 15 ...processing 6 of 15 ...processing 7 of 15 ...processing 8 of 15 ...processing 9 of 15 ...processing 10 of 15 ...processing 11 of 15 ...processing 12 of 15 ...processing 13 of 15 ...processing 14 of 15 total clusters:7 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:7 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:15 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.0-825.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.0-825.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.0-825.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.2349-3127.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.2349-3127.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.2349-3127.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.4180-4964.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.4180-4964.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.4180-4964.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.7111-7995.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.7111-7995.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.7111-7995.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.9366-11049.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.9366-11049.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.9366-11049.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.24292-26057.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.24292-26057.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.24292-26057.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.27603-30800.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.27603-30800.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.27603-30800.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.36875-38681.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.36875-38681.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.36875-38681.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.40674-42805.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.40674-42805.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.40674-42805.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.50886-51853.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.50886-51853.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.50886-51853.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.53433-54340.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.53433-54340.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.53433-54340.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.56120-58359.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.56120-58359.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.56120-58359.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.64168-65110.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.64168-65110.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.64168-65110.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.4080-4900.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.4080-4900.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.4080-4900.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.18665-19754.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.18665-19754.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.18665-19754.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.22584-24083.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.22584-24083.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.22584-24083.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.30043-30904.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.30043-30904.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.30043-30904.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.31147-32360.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.31147-32360.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.31147-32360.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.33335-35934.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.33335-35934.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.33335-35934.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.38503-39487.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.38503-39487.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.38503-39487.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.42465-44822.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.42465-44822.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.42465-44822.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.45910-48232.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.45910-48232.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.45910-48232.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.52377-53169.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.52377-53169.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.52377-53169.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C5 Length: 131745 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:1 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:4 current j:0 j_size:4 current j:1 j_size:4 current j:2 j_size:4 current j:3 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C5.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C5.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:3 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4927%7Ccoatomer.for.1750-4580.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.1750-4580.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.1750-4580.Ar_EST_120301b_rep_c4927%7Ccoatomer.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c219%7Ccoatomer.for.1117-5675.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.1117-5675.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.1117-5675.Ar_EST_120301b_c219%7Ccoatomer.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5068%7Cprotein.for.999-2306.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.999-2306.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.999-2306.Ar_EST_120301b_rep_c5068%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1870%7Cshort-chain.for.7529-8815.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.7529-8815.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.7529-8815.Ar_EST_120301b_c1870%7Cshort-chain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13983%7Cglycerate.for.9016-10532.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9016-10532.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9016-10532.Ar_EST_120301b_c13983%7Cglycerate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2872%7Cglycerate.for.9011-10422.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9011-10422.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9011-10422.Ar_EST_120301b_c2872%7Cglycerate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1884%7Crho.for.9854-11280.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9854-11280.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9854-11280.Ar_EST_120301b_c1884%7Crho.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18292%7C---NA---.for.11079-12444.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.11079-12444.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.11079-12444.Ar_EST_120301b_c18292%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9251%7Cadenylate.for.11875-13224.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.11875-13224.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.11875-13224.Ar_EST_120301b_c9251%7Cadenylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1113%7Cprotein.for.15259-17252.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.15259-17252.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.15259-17252.120301b_Contig1113%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10689%7Cendonuclease.for.16859-18277.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.16859-18277.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.16859-18277.Ar_EST_120301b_c10689%7Cendonuclease.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11369%7Cphospholipase.for.21668-22878.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.21668-22878.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.21668-22878.Ar_EST_120301b_c11369%7Cphospholipase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18303%7Chypothetical.for.23197-24457.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.23197-24457.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.23197-24457.Ar_EST_120301b_c18303%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig495%7Cprotein.for.26089-27731.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.26089-27731.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.26089-27731.120301b_Contig495%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c738%7Chypothetical.for.25998-27627.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.25998-27627.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.25998-27627.Ar_EST_120301b_c738%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16831%7C---NA---.for.26248-27437.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.26248-27437.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.26248-27437.Ar_EST_120301b_c16831%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3170%7Crna-binding.for.29265-30841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.29265-30841.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.29265-30841.Ar_EST_120301b_c3170%7Crna-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18861%7Csplicing.for.30193-31519.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.30193-31519.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.30193-31519.Ar_EST_120301b_c18861%7Csplicing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18342%7Cehahb38tr.for.31682-32618.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.31682-32618.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.31682-32618.Ar_EST_120301b_rep_c18342%7Cehahb38tr.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig330%7Cactin.for.31093-33168.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.31093-33168.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.31093-33168.120301b_Contig330%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19138%7Chypothetical.for.33677-35187.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.33677-35187.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.33677-35187.Ar_EST_120301b_c19138%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9985%7Clipase.for.33305-34844.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.33305-34844.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.33305-34844.Ar_EST_120301b_c9985%7Clipase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16685%7Ctranslation.for.35667-37110.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.35667-37110.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.35667-37110.Ar_EST_120301b_c16685%7Ctranslation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20389%7Csepticolysin.for.36823-38079.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.36823-38079.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.36823-38079.Ar_EST_120301b_rep_c20389%7Csepticolysin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7158%7Csepticolysin.for.36723-38078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.36723-38078.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.36723-38078.Ar_EST_120301b_rep_c7158%7Csepticolysin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1100%7Csepticolysin.for.36741-38079.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.36741-38079.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.36741-38079.120301b_Contig1100%7Csepticolysin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12800%7Cserine.for.39700-41118.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.39700-41118.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.39700-41118.Ar_EST_120301b_c12800%7Cserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12672%7Cserine.for.40155-41467.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.40155-41467.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.40155-41467.Ar_EST_120301b_c12672%7Cserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14883%7C0156836.for.41198-42449.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.41198-42449.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.41198-42449.Ar_EST_120301b_c14883%7C0156836.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c576%7Cpeptidase.for.42583-44087.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.42583-44087.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.42583-44087.Ar_EST_120301b_c576%7Cpeptidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14550%7Crcc1.for.46429-47518.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.46429-47518.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.46429-47518.Ar_EST_120301b_c14550%7Crcc1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3172%7Cpelecinus.for.48613-50486.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.48613-50486.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.48613-50486.Ar_EST_120301b_c3172%7Cpelecinus.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig705%7Cprobable.for.49720-51442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.49720-51442.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.49720-51442.120301b_Contig705%7Cprobable.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17286%7C1112934329288.for.50896-52235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.50896-52235.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.50896-52235.Ar_EST_120301b_c17286%7C1112934329288.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1584%7Cmyosin.for.51678-53058.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.51678-53058.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.51678-53058.Ar_EST_120301b_c1584%7Cmyosin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18785%7Criboflavin.for.52842-53791.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.52842-53791.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.52842-53791.Ar_EST_120301b_rep_c18785%7Criboflavin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19995%7Criboflavin.for.52637-53860.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.52637-53860.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.52637-53860.Ar_EST_120301b_c19995%7Criboflavin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9495%7Cperoxisome.for.53340-55004.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.53340-55004.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.53340-55004.Ar_EST_120301b_c9495%7Cperoxisome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14%7Cfk506-binding.for.54242-56219.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.54242-56219.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.54242-56219.Ar_EST_120301b_c14%7Cfk506-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17894%7Cbg01.for.57293-58491.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.57293-58491.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.57293-58491.Ar_EST_120301b_c17894%7Cbg01.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2318%7Chermansky-pudlak.for.58366-59946.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.58366-59946.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.58366-59946.Ar_EST_120301b_c2318%7Chermansky-pudlak.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13264%7Cphysarum04582.for.60446-61409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.60446-61409.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.60446-61409.Ar_EST_120301b_c13264%7Cphysarum04582.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig569%7Ctrehalose-6-phosphate.for.60904-62620.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.60904-62620.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.60904-62620.120301b_Contig569%7Ctrehalose-6-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1192%7Chypothetical.for.74768-76995.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.74768-76995.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.74768-76995.120301b_Contig1192%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c940%7C1445745_5_c15_062.for.76417-77860.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.76417-77860.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.76417-77860.Ar_EST_120301b_c940%7C1445745_5_c15_062.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19216%7Ctg.for.77340-78465.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.77340-78465.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.77340-78465.Ar_EST_120301b_rep_c19216%7Ctg.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8441%7Cankyrin.for.78567-80270.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.78567-80270.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.78567-80270.Ar_EST_120301b_c8441%7Cankyrin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3062%7Cnacht.for.78319-79781.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.78319-79781.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.78319-79781.Ar_EST_120301b_c3062%7Cnacht.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig922%7Cthioredoxin.for.81853-83382.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.81853-83382.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.81853-83382.120301b_Contig922%7Cthioredoxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1406%7Chx129285.for.81417-82703.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.81417-82703.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.81417-82703.Ar_EST_120301b_c1406%7Chx129285.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c884%7Ccci.for.83640-85075.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.83640-85075.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.83640-85075.Ar_EST_120301b_c884%7Ccci.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3232%7Csimilarity.for.82705-84656.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.82705-84656.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.82705-84656.Ar_EST_120301b_c3232%7Csimilarity.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15594%7Csimilarity.for.83031-84107.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.83031-84107.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.83031-84107.Ar_EST_120301b_c15594%7Csimilarity.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10733%7C---NA---.for.84023-85289.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.84023-85289.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.84023-85289.Ar_EST_120301b_c10733%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig164%7Cmisexpression.for.86591-88318.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.86591-88318.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.86591-88318.120301b_Contig164%7Cmisexpression.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2393%7Chypothetical.for.86080-87393.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.86080-87393.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.86080-87393.Ar_EST_120301b_c2393%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3126%7Cprotein.for.87842-89519.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.87842-89519.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.87842-89519.Ar_EST_120301b_c3126%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12848%7Caldo.for.89750-91167.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.89750-91167.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.89750-91167.Ar_EST_120301b_c12848%7Caldo.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1669%7C%28aldo.for.89843-91300.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.89843-91300.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.89843-91300.Ar_EST_120301b_c1669%7C%28aldo.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9784%7Chypothetical.for.90835-92394.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.90835-92394.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.90835-92394.Ar_EST_120301b_c9784%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1376%7Cpredicted.for.92016-93662.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.92016-93662.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.92016-93662.120301b_Contig1376%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19862%7Cicpl20102_cw46_f06.for.92623-93606.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.92623-93606.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.92623-93606.Ar_EST_120301b_c19862%7Cicpl20102_cw46_f06.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1340%7C---NA---.for.93186-94487.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.93186-94487.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.93186-94487.Ar_EST_120301b_c1340%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1082%7C---NA---.for.94235-95710.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.94235-95710.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.94235-95710.Ar_EST_120301b_c1082%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig308%7Cnad.for.95110-97107.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.95110-97107.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.95110-97107.120301b_Contig308%7Cnad.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14271%7Crna.for.101533-102830.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.101533-102830.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.101533-102830.Ar_EST_120301b_c14271%7Crna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15637%7Chypothetical.for.103277-104452.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.103277-104452.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.103277-104452.Ar_EST_120301b_c15637%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16787%7Ccchu.for.103813-105125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.103813-105125.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.103813-105125.Ar_EST_120301b_c16787%7Ccchu.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1482%7C30s.for.104418-105784.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.104418-105784.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.104418-105784.Ar_EST_120301b_c1482%7C30s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1205%7Cmdf180_4-28dpi_hb383.for.105373-106697.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.105373-106697.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.105373-106697.Ar_EST_120301b_c1205%7Cmdf180_4-28dpi_hb383.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c938%7Cduo.for.105969-107823.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.105969-107823.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.105969-107823.Ar_EST_120301b_c938%7Cduo.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10147%7C---NA---.for.107361-108436.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.107361-108436.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.107361-108436.Ar_EST_120301b_c10147%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17005%7Cfp072159.for.108422-109291.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.108422-109291.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.108422-109291.Ar_EST_120301b_c17005%7Cfp072159.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12429%7Csubunit.for.108615-109926.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.108615-109926.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.108615-109926.Ar_EST_120301b_c12429%7Csubunit.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10392%7Canolis.for.109947-111462.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.109947-111462.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.109947-111462.Ar_EST_120301b_c10392%7Canolis.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16466%7Cxre.for.114425-115636.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.114425-115636.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.114425-115636.Ar_EST_120301b_c16466%7Cxre.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c196%7Cankyrin.for.113280-115250.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.113280-115250.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.113280-115250.Ar_EST_120301b_c196%7Cankyrin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11093%7Cdomain-containing.for.115928-117488.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.115928-117488.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.115928-117488.Ar_EST_120301b_c11093%7Cdomain-containing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11883%7Cfq355161.for.118590-120174.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.118590-120174.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.118590-120174.Ar_EST_120301b_c11883%7Cfq355161.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15305%7Cccif.for.120353-121637.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.120353-121637.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.120353-121637.Ar_EST_120301b_c15305%7Cccif.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8899%7Csumo.for.120923-122601.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.120923-122601.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.120923-122601.Ar_EST_120301b_c8899%7Csumo.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5398%7Cgadus.for.123283-124857.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.123283-124857.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.123283-124857.Ar_EST_120301b_rep_c5398%7Cgadus.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c594%7Ccbxu.for.122875-124833.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.122875-124833.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.122875-124833.Ar_EST_120301b_c594%7Ccbxu.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9877%7Cubiquitin-activating.for.126067-128042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.126067-128042.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.126067-128042.Ar_EST_120301b_c9877%7Cubiquitin-activating.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:60 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:60 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:60 now processing 0 total clusters:60 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:60 now processing 0 total clusters:60 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:60 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:60 now processing 0 total clusters:60 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:60 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:53 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:51 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:62 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:70 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:68 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:69 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:61 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:69 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:72 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:44 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092746%7Cgb%7CEFC46387%2E1%7C.for.1013-5621.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.1013-5621.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.1013-5621.gi%7C284092746%7Cgb%7CEFC46387%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083683%7Cgb%7CEFC37384%2E1%7C.for.5064-6702.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.5064-6702.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.5064-6702.gi%7C284083683%7Cgb%7CEFC37384%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088407%7Cgb%7CEFC42071%2E1%7C.for.8543-10559.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.8543-10559.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.8543-10559.gi%7C284088407%7Cgb%7CEFC42071%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085812%7Cgb%7CEFC39493%2E1%7C.for.9874-11247.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11247.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11247.gi%7C284085812%7Cgb%7CEFC39493%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090220%7Cgb%7CEFC43873%2E1%7C.for.9862-11235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9862-11235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9862-11235.gi%7C284090220%7Cgb%7CEFC43873%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095573%7Cgb%7CEFC49203%2E1%7C.for.9877-11238.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9877-11238.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9877-11238.gi%7C284095573%7Cgb%7CEFC49203%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083905%7Cgb%7CEFC37603%2E1%7C.for.9853-11214.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9853-11214.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9853-11214.gi%7C284083905%7Cgb%7CEFC37603%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092862%7Cgb%7CEFC46502%2E1%7C.for.9874-11241.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11241.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11241.gi%7C284092862%7Cgb%7CEFC46502%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089636%7Cgb%7CEFC43292%2E1%7C.for.9874-11250.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11250.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11250.gi%7C284089636%7Cgb%7CEFC43292%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081627%7Cgb%7CEFC35562%2E1%7C.for.9874-10892.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-10892.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-10892.gi%7C284081627%7Cgb%7CEFC35562%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093011%7Cgb%7CEFC46651%2E1%7C.for.9877-11235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9877-11235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9877-11235.gi%7C284093011%7Cgb%7CEFC46651%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090598%7Cgb%7CEFC44249%2E1%7C.for.9868-11235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9868-11235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9868-11235.gi%7C284090598%7Cgb%7CEFC44249%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093381%7Cgb%7CEFC47019%2E1%7C.for.9865-11244.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9865-11244.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9865-11244.gi%7C284093381%7Cgb%7CEFC47019%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087750%7Cgb%7CEFC41418%2E1%7C.for.9874-11241.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11241.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11241.gi%7C284087750%7Cgb%7CEFC41418%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097171%7Cgb%7CEFC50798%2E1%7C.for.9955-11235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9955-11235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9955-11235.gi%7C284097171%7Cgb%7CEFC50798%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084253%7Cgb%7CEFC37948%2E1%7C.for.9874-11247.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11247.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11247.gi%7C284084253%7Cgb%7CEFC37948%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082060%7Cgb%7CEFC35846%2E1%7C.for.9874-11082.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11082.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11082.gi%7C284082060%7Cgb%7CEFC35846%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089921%7Cgb%7CEFC43576%2E1%7C.for.10142-11211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.10142-11211.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.10142-11211.gi%7C284089921%7Cgb%7CEFC43576%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081289%7Cgb%7CEFC35375%2E1%7C.for.9874-11247.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11247.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11247.gi%7C284081289%7Cgb%7CEFC35375%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087888%7Cgb%7CEFC41555%2E1%7C.for.9868-11307.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9868-11307.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9868-11307.gi%7C284087888%7Cgb%7CEFC41555%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090604%7Cgb%7CEFC44255%2E1%7C.for.9874-11235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11235.gi%7C284090604%7Cgb%7CEFC44255%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093718%7Cgb%7CEFC47355%2E1%7C.for.9868-11235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9868-11235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9868-11235.gi%7C284093718%7Cgb%7CEFC47355%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092603%7Cgb%7CEFC46244%2E1%7C.for.9952-11253.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9952-11253.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9952-11253.gi%7C284092603%7Cgb%7CEFC46244%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095901%7Cgb%7CEFC49530%2E1%7C.for.15309-17452.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.15309-17452.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.15309-17452.gi%7C284095901%7Cgb%7CEFC49530%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.for.18476-19500.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18476-19500.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18476-19500.gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083993%7Cgb%7CEFC37690%2E1%7C.for.18125-19958.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18125-19958.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18125-19958.gi%7C284083993%7Cgb%7CEFC37690%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094055%7Cgb%7CEFC47690%2E1%7C.for.18263-19883.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18263-19883.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18263-19883.gi%7C284094055%7Cgb%7CEFC47690%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090579%7Cgb%7CEFC44230%2E1%7C.for.18263-19865.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18263-19865.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18263-19865.gi%7C284090579%7Cgb%7CEFC44230%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081402%7Cgb%7CEFC35430%2E1%7C.for.18428-19476.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18428-19476.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18428-19476.gi%7C284081402%7Cgb%7CEFC35430%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090447%7Cgb%7CEFC44099%2E1%7C.for.18257-19922.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18257-19922.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18257-19922.gi%7C284090447%7Cgb%7CEFC44099%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092196%7Cgb%7CEFC45839%2E1%7C.for.18269-19883.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18269-19883.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18269-19883.gi%7C284092196%7Cgb%7CEFC45839%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089069%7Cgb%7CEFC42729%2E1%7C.for.18263-19922.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18263-19922.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18263-19922.gi%7C284089069%7Cgb%7CEFC42729%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090909%7Cgb%7CEFC44558%2E1%7C.for.18458-19509.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18458-19509.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18458-19509.gi%7C284090909%7Cgb%7CEFC44558%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089047%7Cgb%7CEFC42707%2E1%7C.for.18263-19919.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18263-19919.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18263-19919.gi%7C284089047%7Cgb%7CEFC42707%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083998%7Cgb%7CEFC37695%2E1%7C.for.18269-19865.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18269-19865.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18269-19865.gi%7C284083998%7Cgb%7CEFC37695%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090070%7Cgb%7CEFC43724%2E1%7C.for.18380-19865.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18380-19865.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18380-19865.gi%7C284090070%7Cgb%7CEFC43724%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093175%7Cgb%7CEFC46814%2E1%7C.for.21409-23737.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.21409-23737.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.21409-23737.gi%7C284093175%7Cgb%7CEFC46814%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091296%7Cgb%7CEFC44943%2E1%7C.for.29978-31002.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.29978-31002.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.29978-31002.gi%7C284091296%7Cgb%7CEFC44943%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094539%7Cgb%7CEFC48173%2E1%7C.for.32411-34593.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.32411-34593.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.32411-34593.gi%7C284094539%7Cgb%7CEFC48173%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082502%7Cgb%7CEFC36219%2E1%7C.for.34706-36121.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.34706-36121.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.34706-36121.gi%7C284082502%7Cgb%7CEFC36219%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085459%7Cgb%7CEFC39143%2E1%7C.for.35447-37131.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.35447-37131.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.35447-37131.gi%7C284085459%7Cgb%7CEFC39143%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086511%7Cgb%7CEFC40187%2E1%7C.for.39688-41618.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.39688-41618.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.39688-41618.gi%7C284086511%7Cgb%7CEFC40187%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091530%7Cgb%7CEFC45176%2E1%7C.for.39691-41822.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.39691-41822.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.39691-41822.gi%7C284091530%7Cgb%7CEFC45176%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083230%7Cgb%7CEFC36935%2E1%7C.for.39673-41822.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.39673-41822.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.39673-41822.gi%7C284083230%7Cgb%7CEFC36935%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089725%7Cgb%7CEFC43381%2E1%7C.for.49693-51284.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.49693-51284.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.49693-51284.gi%7C284089725%7Cgb%7CEFC43381%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097201%7Cgb%7CEFC50828%2E1%7C.for.52586-53864.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.52586-53864.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.52586-53864.gi%7C284097201%7Cgb%7CEFC50828%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081386%7Cgb%7CEFC35420%2E1%7C.for.55094-56238.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55094-56238.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55094-56238.gi%7C284081386%7Cgb%7CEFC35420%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097061%7Cgb%7CEFC50688%2E1%7C.for.55097-56157.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55097-56157.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55097-56157.gi%7C284097061%7Cgb%7CEFC50688%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095747%7Cgb%7CEFC49377%2E1%7C.for.55097-56211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55097-56211.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55097-56211.gi%7C284095747%7Cgb%7CEFC49377%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088080%7Cgb%7CEFC41746%2E1%7C.for.55097-56232.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55097-56232.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55097-56232.gi%7C284088080%7Cgb%7CEFC41746%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092504%7Cgb%7CEFC46146%2E1%7C.for.55103-56157.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55103-56157.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55103-56157.gi%7C284092504%7Cgb%7CEFC46146%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090684%7Cgb%7CEFC44334%2E1%7C.for.55094-56238.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55094-56238.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55094-56238.gi%7C284090684%7Cgb%7CEFC44334%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087392%7Cgb%7CEFC41062%2E1%7C.for.58401-60770.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.58401-60770.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.58401-60770.gi%7C284087392%7Cgb%7CEFC41062%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089364%7Cgb%7CEFC43022%2E1%7C.for.60972-62488.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.60972-62488.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.60972-62488.gi%7C284089364%7Cgb%7CEFC43022%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081650%7Cgb%7CEFC35573%2E1%7C.for.62355-63987.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.62355-63987.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.62355-63987.gi%7C284081650%7Cgb%7CEFC35573%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091868%7Cgb%7CEFC45513%2E1%7C.for.62271-63430.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.62271-63430.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.62271-63430.gi%7C284091868%7Cgb%7CEFC45513%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082307%7Cgb%7CEFC36042%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284082307%7Cgb%7CEFC36042%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093856%7Cgb%7CEFC47492%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284093856%7Cgb%7CEFC47492%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085911%7Cgb%7CEFC39591%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284085911%7Cgb%7CEFC39591%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085981%7Cgb%7CEFC39661%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284085981%7Cgb%7CEFC39661%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087491%7Cgb%7CEFC41160%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284087491%7Cgb%7CEFC41160%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093843%7Cgb%7CEFC47479%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284093843%7Cgb%7CEFC47479%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095026%7Cgb%7CEFC48658%2E1%7C.for.71509-72458.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72458.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72458.gi%7C284095026%7Cgb%7CEFC48658%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090245%7Cgb%7CEFC43898%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284090245%7Cgb%7CEFC43898%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087527%7Cgb%7CEFC41196%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284087527%7Cgb%7CEFC41196%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083958%7Cgb%7CEFC37656%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284083958%7Cgb%7CEFC37656%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095626%7Cgb%7CEFC49256%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284095626%7Cgb%7CEFC49256%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089356%7Cgb%7CEFC43014%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284089356%7Cgb%7CEFC43014%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085878%7Cgb%7CEFC39558%2E1%7C.for.78714-80903.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.78714-80903.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.78714-80903.gi%7C284085878%7Cgb%7CEFC39558%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093226%7Cgb%7CEFC46865%2E1%7C.for.80969-83266.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.80969-83266.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.80969-83266.gi%7C284093226%7Cgb%7CEFC46865%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091245%7Cgb%7CEFC44893%2E1%7C.for.82819-84356.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.82819-84356.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.82819-84356.gi%7C284091245%7Cgb%7CEFC44893%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C11466181%7Cref%7CNP_066504%2E1%7C.for.104625-105715.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.104625-105715.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.104625-105715.gi%7C11466181%7Cref%7CNP_066504%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C10444216%7Cgb%7CAAG17782%2E1%7CAF288092_7.for.104625-105715.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.104625-105715.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.104625-105715.gi%7C10444216%7Cgb%7CAAG17782%2E1%7CAF288092_7.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096956%7Cgb%7CEFC50583%2E1%7C.for.104946-106012.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.104946-106012.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.104946-106012.gi%7C284096956%7Cgb%7CEFC50583%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084495%7Cgb%7CEFC38187%2E1%7C.for.117674-118960.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.117674-118960.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.117674-118960.gi%7C284084495%7Cgb%7CEFC38187%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088316%7Cgb%7CEFC41980%2E1%7C.for.124126-128091.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.124126-128091.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.124126-128091.gi%7C284088316%7Cgb%7CEFC41980%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:20 now processing 0 ...processing 0 of 18 ...processing 1 of 18 ...processing 2 of 18 ...processing 3 of 18 ...processing 4 of 18 ...processing 5 of 18 ...processing 6 of 18 ...processing 7 of 18 ...processing 8 of 18 ...processing 9 of 18 ...processing 10 of 18 ...processing 11 of 18 ...processing 12 of 18 ...processing 13 of 18 ...processing 14 of 18 ...processing 15 of 18 ...processing 16 of 18 ...processing 17 of 18 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:20 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:20 now processing 0 ...processing 0 of 12 ...processing 1 of 12 ...processing 2 of 12 ...processing 3 of 12 ...processing 4 of 12 ...processing 5 of 12 ...processing 6 of 12 ...processing 7 of 12 ...processing 8 of 12 ...processing 9 of 12 ...processing 10 of 12 ...processing 11 of 12 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:12 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 12 ...processing 1 of 12 ...processing 2 of 12 ...processing 3 of 12 ...processing 4 of 12 ...processing 5 of 12 ...processing 6 of 12 ...processing 7 of 12 ...processing 8 of 12 ...processing 9 of 12 ...processing 10 of 12 ...processing 11 of 12 total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:12 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 10 ...processing 1 of 10 ...processing 2 of 10 ...processing 3 of 10 ...processing 4 of 10 ...processing 5 of 10 ...processing 6 of 10 ...processing 7 of 10 ...processing 8 of 10 ...processing 9 of 10 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:24 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:24 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:24 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:24 now processing 0 total clusters:24 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:24 now processing 0 total clusters:24 now processing 0 total clusters:24 now processing 0 total clusters:24 now processing 0 total clusters:24 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:24 now processing 0 total clusters:24 now processing 0 total clusters:24 now processing 0 total clusters:24 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:24 now processing 0 total clusters:24 now processing 0 total clusters:24 now processing 0 total clusters:24 now processing 0 total clusters:24 now processing 0 total clusters:24 now processing 0 total clusters:24 now processing 0 total clusters:24 now processing 0 total clusters:24 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:24 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.7728-8620.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.7728-8620.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.7728-8620.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.10049-13027.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.10049-13027.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.10049-13027.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.15458-18087.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.15458-18087.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.15458-18087.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.21608-23537.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.21608-23537.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.21608-23537.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.26197-27427.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.26197-27427.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.26197-27427.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.29461-32968.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.29461-32968.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.29461-32968.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.36922-37878.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.36922-37878.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.36922-37878.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.39872-42249.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.39872-42249.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.39872-42249.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.42782-43887.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.42782-43887.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.42782-43887.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.46614-47318.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.46614-47318.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.46614-47318.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.48812-50286.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.48812-50286.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.48812-50286.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.51095-52858.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.51095-52858.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.51095-52858.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.53539-54804.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.53539-54804.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.53539-54804.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.57492-58310.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.57492-58310.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.57492-58310.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.60645-61220.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.60645-61220.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.60645-61220.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.62470-63787.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.62470-63787.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.62470-63787.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.71310-72258.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.71310-72258.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.71310-72258.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.74962-76795.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.74962-76795.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.74962-76795.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.78518-80070.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.78518-80070.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.78518-80070.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.81168-83182.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.81168-83182.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.81168-83182.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.86279-89319.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.86279-89319.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.86279-89319.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.89946-92194.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.89946-92194.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.89946-92194.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.101732-105584.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.101732-105584.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.101732-105584.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.108814-109726.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.108814-109726.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.108814-109726.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.110146-111262.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.110146-111262.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.110146-111262.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.116127-117288.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.116127-117288.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.116127-117288.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.118717-119974.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.118717-119974.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.118717-119974.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.120552-121441.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.120552-121441.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.120552-121441.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.123067-127891.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.123067-127891.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.123067-127891.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.1198-5475.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.1198-5475.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.1198-5475.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.8742-10359.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.8742-10359.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.8742-10359.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.18324-19758.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.18324-19758.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.18324-19758.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.23392-24257.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.23392-24257.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.23392-24257.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.33498-36931.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.33498-36931.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.33498-36931.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.49892-51242.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.49892-51242.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.49892-51242.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.52785-53664.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.52785-53664.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.52785-53664.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.54441-56032.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.54441-56032.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.54441-56032.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.58565-60570.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.58565-60570.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.58565-60570.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.61171-62288.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.61171-62288.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.61171-62288.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.76614-77660.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.76614-77660.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.76614-77660.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/40_0.82904-85103.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/40_0.82904-85103.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/40_0.82904-85103.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/41_0.93385-94287.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/41_0.93385-94287.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/41_0.93385-94287.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/42_0.94429-96907.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/42_0.94429-96907.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/42_0.94429-96907.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/43_0.105145-108236.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/43_0.105145-108236.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/43_0.105145-108236.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/44_0.113479-115436.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/44_0.113479-115436.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/44_0.113479-115436.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/45_0.121122-122453.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/45_0.121122-122453.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/45_0.121122-122453.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C6 Length: 122113 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:3 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:3 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:2 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:2 current j:0 j_size:2 current j:1 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C6.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C6.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9097%7Cendothelin-converting.for.123-1393.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.123-1393.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.123-1393.Ar_EST_120301b_c9097%7Cendothelin-converting.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1238%7Cchromosome.for.803-3026.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.803-3026.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.803-3026.Ar_EST_120301b_c1238%7Cchromosome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c561%7Chypothetical.for.2254-3973.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.2254-3973.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.2254-3973.Ar_EST_120301b_c561%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7092%7Chypothetical.for.2313-3425.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.2313-3425.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.2313-3425.Ar_EST_120301b_rep_c7092%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8999%7C---NA---.for.7519-9225.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.7519-9225.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.7519-9225.Ar_EST_120301b_c8999%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13174%7Cadp-ribosylation.for.15703-16832.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.15703-16832.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.15703-16832.Ar_EST_120301b_rep_c13174%7Cadp-ribosylation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1689%7Cvacuolar.for.15336-16737.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.15336-16737.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.15336-16737.Ar_EST_120301b_c1689%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9681%7Cvacuolar.for.15970-17826.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.15970-17826.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.15970-17826.Ar_EST_120301b_c9681%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14346%7Cvacuolar.for.17201-18217.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.17201-18217.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.17201-18217.Ar_EST_120301b_c14346%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3137%7Cdelta-1-pyrroline-5-carboxylate.for.19234-20841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.19234-20841.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.19234-20841.Ar_EST_120301b_c3137%7Cdelta-1-pyrroline-5-carboxylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18750%7Cdelta-1-pyrroline-5-carboxylate.for.19121-20728.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.19121-20728.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.19121-20728.Ar_EST_120301b_c18750%7Cdelta-1-pyrroline-5-carboxylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2477%7Cdelta-1-pyrroline-5-carboxylate.for.18215-20376.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.18215-20376.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.18215-20376.Ar_EST_120301b_c2477%7Cdelta-1-pyrroline-5-carboxylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19978%7Cdihydrolipoamide.for.21846-23160.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.21846-23160.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.21846-23160.Ar_EST_120301b_c19978%7Cdihydrolipoamide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig128%7Cdihydrolipoamide.for.20387-22977.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.20387-22977.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.20387-22977.120301b_Contig128%7Cdihydrolipoamide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8416%7Ctwo-component.for.22663-23931.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.22663-23931.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.22663-23931.Ar_EST_120301b_c8416%7Ctwo-component.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1919%7Csurface.for.24471-26129.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.24471-26129.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.24471-26129.Ar_EST_120301b_c1919%7Csurface.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17688%7Calpha-galactosidase.for.26917-28272.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.26917-28272.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.26917-28272.Ar_EST_120301b_c17688%7Calpha-galactosidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2981%7Cras.for.37609-39072.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.37609-39072.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.37609-39072.Ar_EST_120301b_c2981%7Cras.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11131%7Cras.for.36977-38575.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.36977-38575.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.36977-38575.Ar_EST_120301b_c11131%7Cras.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3153%7Cras.for.36079-37994.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.36079-37994.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.36079-37994.Ar_EST_120301b_c3153%7Cras.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2631%7Crasgef.for.38082-39579.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.38082-39579.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.38082-39579.Ar_EST_120301b_c2631%7Crasgef.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11259%7Chypothetical.for.39486-40750.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.39486-40750.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.39486-40750.Ar_EST_120301b_c11259%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14312%7Cmitochondrial.for.41003-42418.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.41003-42418.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.41003-42418.Ar_EST_120301b_c14312%7Cmitochondrial.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18904%7Cembryof101113a3.for.42698-44071.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.42698-44071.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.42698-44071.Ar_EST_120301b_rep_c18904%7Cembryof101113a3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16334%7Ccazo.for.45899-46844.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45899-46844.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45899-46844.Ar_EST_120301b_rep_c16334%7Ccazo.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig486%7Cmitochondrial.for.45155-47138.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45155-47138.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45155-47138.120301b_Contig486%7Cmitochondrial.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19473%7Ctrans-2-enoyl-.for.45838-46890.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45838-46890.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45838-46890.Ar_EST_120301b_c19473%7Ctrans-2-enoyl-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19766%7Ctrans-2-enoyl-.for.45298-46431.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45298-46431.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45298-46431.Ar_EST_120301b_rep_c19766%7Ctrans-2-enoyl-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13758%7Csuperoxide.for.46353-47705.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.46353-47705.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.46353-47705.Ar_EST_120301b_c13758%7Csuperoxide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15340%7C---NA---.for.48138-49353.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.48138-49353.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.48138-49353.Ar_EST_120301b_c15340%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12253%7Ccell.for.50027-51427.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.50027-51427.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.50027-51427.Ar_EST_120301b_c12253%7Ccell.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3614%7Ctryptophan.for.51706-53464.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.51706-53464.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.51706-53464.Ar_EST_120301b_c3614%7Ctryptophan.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3246%7Cbp441934.for.53432-54894.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.53432-54894.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.53432-54894.Ar_EST_120301b_c3246%7Cbp441934.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1844%7Cprotein.for.53045-54578.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.53045-54578.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.53045-54578.Ar_EST_120301b_c1844%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13342%7C---NA---.for.54901-55868.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.54901-55868.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.54901-55868.Ar_EST_120301b_c13342%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17156%7Ckiaa1052.for.55079-56460.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.55079-56460.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.55079-56460.Ar_EST_120301b_c17156%7Ckiaa1052.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12715%7Cfq318461.for.62217-63618.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.62217-63618.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.62217-63618.Ar_EST_120301b_c12715%7Cfq318461.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15940%7Cconserved.for.63630-65002.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.63630-65002.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.63630-65002.Ar_EST_120301b_c15940%7Cconserved.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1362%7C---NA---.for.64492-65876.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.64492-65876.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.64492-65876.Ar_EST_120301b_c1362%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15949%7C---NA---.for.68482-69658.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.68482-69658.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.68482-69658.Ar_EST_120301b_rep_c15949%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2106%7Cklhrrc001_12-e02.for.68183-69812.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.68183-69812.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.68183-69812.Ar_EST_120301b_c2106%7Cklhrrc001_12-e02.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15340%7C---NA---.for.73015-74155.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.73015-74155.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.73015-74155.Ar_EST_120301b_c15340%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20087%7Cprag-.for.74208-75368.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.74208-75368.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.74208-75368.Ar_EST_120301b_rep_c20087%7Cprag-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4808%7Cprag-.for.74191-75388.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.74191-75388.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.74191-75388.Ar_EST_120301b_rep_c4808%7Cprag-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8841%7Cag2_p7_l13_m13r.for.79972-81811.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.79972-81811.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.79972-81811.Ar_EST_120301b_c8841%7Cag2_p7_l13_m13r.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4471%7Cshort-chain.for.81454-83106.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.81454-83106.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.81454-83106.Ar_EST_120301b_rep_c4471%7Cshort-chain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5840%7Cshort-chain.for.81555-83050.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.81555-83050.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.81555-83050.Ar_EST_120301b_rep_c5840%7Cshort-chain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10307%7Cshort-chain.for.81484-82721.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.81484-82721.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.81484-82721.Ar_EST_120301b_rep_c10307%7Cshort-chain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig656%7Carmadillo.for.91033-93810.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.91033-93810.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.91033-93810.120301b_Contig656%7Carmadillo.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7896%7Cprotein.for.93047-95284.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.93047-95284.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.93047-95284.Ar_EST_120301b_c7896%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14083%7Chypothetical.for.97265-98467.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.97265-98467.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.97265-98467.Ar_EST_120301b_c14083%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14686%7Chypothetical.for.97297-98350.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.97297-98350.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.97297-98350.Ar_EST_120301b_c14686%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2116%7Chat.for.97324-98663.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.97324-98663.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.97324-98663.Ar_EST_120301b_c2116%7Chat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15340%7C---NA---.for.98833-100062.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.98833-100062.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.98833-100062.Ar_EST_120301b_c15340%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4652%7Catp-dependent.for.99963-102250.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.99963-102250.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.99963-102250.Ar_EST_120301b_rep_c4652%7Catp-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14242%7Catp.for.100109-101104.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.100109-101104.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.100109-101104.Ar_EST_120301b_c14242%7Catp.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12029%7Cpirin-related.for.102587-103992.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.102587-103992.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.102587-103992.Ar_EST_120301b_c12029%7Cpirin-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8398%7Cnadh.for.103646-104832.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.103646-104832.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.103646-104832.Ar_EST_120301b_rep_c8398%7Cnadh.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c775%7Cnadh.for.103680-104925.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.103680-104925.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.103680-104925.Ar_EST_120301b_c775%7Cnadh.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16811%7Cprotein.for.104900-106748.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.104900-106748.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.104900-106748.Ar_EST_120301b_c16811%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig532%7Cdnaj.for.108502-110436.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108502-110436.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108502-110436.120301b_Contig532%7Cdnaj.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5627%7Cdnaj.for.108299-110431.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108299-110431.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108299-110431.Ar_EST_120301b_rep_c5627%7Cdnaj.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6751%7Cdnaj.for.108406-110044.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108406-110044.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108406-110044.Ar_EST_120301b_rep_c6751%7Cdnaj.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19114%7Cccih.for.110438-111717.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.110438-111717.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.110438-111717.Ar_EST_120301b_c19114%7Cccih.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8278%7Ccomplex.for.110596-111614.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.110596-111614.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.110596-111614.Ar_EST_120301b_c8278%7Ccomplex.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16738%7Cprotein.for.111320-112663.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.111320-112663.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.111320-112663.Ar_EST_120301b_c16738%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4485%7Clate.for.121338-122113.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.121338-122113.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.121338-122113.Ar_EST_120301b_rep_c4485%7Clate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6023%7Chypothetical.for.121423-122113.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.121423-122113.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.121423-122113.Ar_EST_120301b_rep_c6023%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12513%7Cantifreeze.for.121306-122113.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.121306-122113.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.121306-122113.Ar_EST_120301b_rep_c12513%7Cantifreeze.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:71 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:53 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:58 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:78 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:59 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:72 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:67 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:66 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:50 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088158%7Cgb%7CEFC41823%2E1%7C.for.2365-4055.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.2365-4055.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.2365-4055.gi%7C284088158%7Cgb%7CEFC41823%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088143%7Cgb%7CEFC41808%2E1%7C.for.3371-6960.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.3371-6960.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.3371-6960.gi%7C284088143%7Cgb%7CEFC41808%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088065%7Cgb%7CEFC41731%2E1%7C.for.15266-18233.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.15266-18233.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.15266-18233.gi%7C284088065%7Cgb%7CEFC41731%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088066%7Cgb%7CEFC41732%2E1%7C.for.17441-18522.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.17441-18522.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.17441-18522.gi%7C284088066%7Cgb%7CEFC41732%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092276%7Cgb%7CEFC45919%2E1%7C.for.18360-20850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.18360-20850.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.18360-20850.gi%7C284092276%7Cgb%7CEFC45919%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094295%7Cgb%7CEFC47929%2E1%7C.for.20588-23148.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.20588-23148.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.20588-23148.gi%7C284094295%7Cgb%7CEFC47929%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094355%7Cgb%7CEFC47989%2E1%7C.for.20627-22068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.20627-22068.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.20627-22068.gi%7C284094355%7Cgb%7CEFC47989%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094493%7Cgb%7CEFC48127%2E1%7C.for.20579-23154.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.20579-23154.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.20579-23154.gi%7C284094493%7Cgb%7CEFC48127%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084633%7Cgb%7CEFC38324%2E1%7C.for.36113-38819.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.36113-38819.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.36113-38819.gi%7C284084633%7Cgb%7CEFC38324%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097160%7Cgb%7CEFC50787%2E1%7C.for.41048-43365.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.41048-43365.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.41048-43365.gi%7C284097160%7Cgb%7CEFC50787%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083887%7Cgb%7CEFC37585%2E1%7C.for.43995-45841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.43995-45841.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.43995-45841.gi%7C284083887%7Cgb%7CEFC37585%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088044%7Cgb%7CEFC41710%2E1%7C.for.45165-46912.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45165-46912.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45165-46912.gi%7C284088044%7Cgb%7CEFC41710%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083596%7Cgb%7CEFC37298%2E1%7C.for.46621-48068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.46621-48068.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.46621-48068.gi%7C284083596%7Cgb%7CEFC37298%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083542%7Cgb%7CEFC37244%2E1%7C.for.46621-48068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.46621-48068.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.46621-48068.gi%7C284083542%7Cgb%7CEFC37244%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085466%7Cgb%7CEFC39150%2E1%7C.for.51890-53804.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.51890-53804.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.51890-53804.gi%7C284085466%7Cgb%7CEFC39150%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088022%7Cgb%7CEFC41688%2E1%7C.for.55217-58498.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.55217-58498.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.55217-58498.gi%7C284088022%7Cgb%7CEFC41688%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094068%7Cgb%7CEFC47703%2E1%7C.for.57841-59500.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57841-59500.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57841-59500.gi%7C284094068%7Cgb%7CEFC47703%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093385%7Cgb%7CEFC47023%2E1%7C.for.58206-59248.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58206-59248.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58206-59248.gi%7C284093385%7Cgb%7CEFC47023%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091587%7Cgb%7CEFC45233%2E1%7C.for.58254-59266.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58254-59266.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58254-59266.gi%7C284091587%7Cgb%7CEFC45233%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093143%7Cgb%7CEFC46782%2E1%7C.for.57859-59518.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57859-59518.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57859-59518.gi%7C284093143%7Cgb%7CEFC46782%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085317%7Cgb%7CEFC39002%2E1%7C.for.58215-59287.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58215-59287.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58215-59287.gi%7C284085317%7Cgb%7CEFC39002%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.for.58239-59248.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58239-59248.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58239-59248.gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094136%7Cgb%7CEFC47771%2E1%7C.for.58200-59290.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58200-59290.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58200-59290.gi%7C284094136%7Cgb%7CEFC47771%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089231%7Cgb%7CEFC42890%2E1%7C.for.57859-59515.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57859-59515.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57859-59515.gi%7C284089231%7Cgb%7CEFC42890%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083993%7Cgb%7CEFC37690%2E1%7C.for.57853-59518.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57853-59518.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57853-59518.gi%7C284083993%7Cgb%7CEFC37690%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092366%7Cgb%7CEFC46008%2E1%7C.for.57856-59488.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57856-59488.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57856-59488.gi%7C284092366%7Cgb%7CEFC46008%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094875%7Cgb%7CEFC48508%2E1%7C.for.57856-59518.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57856-59518.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57856-59518.gi%7C284094875%7Cgb%7CEFC48508%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094163%7Cgb%7CEFC47798%2E1%7C.for.58227-59203.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58227-59203.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58227-59203.gi%7C284094163%7Cgb%7CEFC47798%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085986%7Cgb%7CEFC39666%2E1%7C.for.57838-59518.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57838-59518.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57838-59518.gi%7C284085986%7Cgb%7CEFC39666%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094832%7Cgb%7CEFC48465%2E1%7C.for.57856-59599.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57856-59599.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57856-59599.gi%7C284094832%7Cgb%7CEFC48465%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088361%7Cgb%7CEFC42025%2E1%7C.for.57841-59518.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57841-59518.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57841-59518.gi%7C284088361%7Cgb%7CEFC42025%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097221%7Cgb%7CEFC50848%2E1%7C.for.60697-61847.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.60697-61847.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.60697-61847.gi%7C284097221%7Cgb%7CEFC50848%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094035%7Cgb%7CEFC47670%2E1%7C.for.67414-68339.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.67414-68339.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.67414-68339.gi%7C284094035%7Cgb%7CEFC47670%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093439%7Cgb%7CEFC47077%2E1%7C.for.67289-68478.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.67289-68478.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.67289-68478.gi%7C284093439%7Cgb%7CEFC47077%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085372%7Cgb%7CEFC39056%2E1%7C.for.73551-74923.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.73551-74923.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.73551-74923.gi%7C284085372%7Cgb%7CEFC39056%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.75922-77087.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77087.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77087.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.for.75925-77141.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77141.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77141.gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.for.75922-77129.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77129.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77129.gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.for.75916-77078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75916-77078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75916-77078.gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.for.75928-77075.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75928-77075.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75928-77075.gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085992%7Cgb%7CEFC39672%2E1%7C.for.75850-77639.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75850-77639.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75850-77639.gi%7C284085992%7Cgb%7CEFC39672%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.for.75925-77453.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77453.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77453.gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.for.75931-77072.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75931-77072.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75931-77072.gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094669%7Cgb%7CEFC48302%2E1%7C.for.75925-77129.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77129.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77129.gi%7C284094669%7Cgb%7CEFC48302%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084257%7Cgb%7CEFC37951%2E1%7C.for.75928-77915.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75928-77915.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75928-77915.gi%7C284084257%7Cgb%7CEFC37951%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.for.75901-77078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75901-77078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75901-77078.gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.for.75892-77078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75892-77078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75892-77078.gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.for.75874-77078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75874-77078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75874-77078.gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090289%7Cgb%7CEFC43941%2E1%7C.for.75877-77117.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75877-77117.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75877-77117.gi%7C284090289%7Cgb%7CEFC43941%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.for.75922-77237.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77237.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77237.gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090138%7Cgb%7CEFC43791%2E1%7C.for.75919-77417.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75919-77417.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75919-77417.gi%7C284090138%7Cgb%7CEFC43791%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.for.75925-77075.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77075.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77075.gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082687%7Cgb%7CEFC36400%2E1%7C.for.75901-77087.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75901-77087.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75901-77087.gi%7C284082687%7Cgb%7CEFC36400%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.for.75922-77087.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77087.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77087.gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093864%7Cgb%7CEFC47500%2E1%7C.for.75916-77162.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75916-77162.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75916-77162.gi%7C284093864%7Cgb%7CEFC47500%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091293%7Cgb%7CEFC44940%2E1%7C.for.75916-77120.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75916-77120.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75916-77120.gi%7C284091293%7Cgb%7CEFC44940%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.for.75925-77108.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77108.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77108.gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097003%7Cgb%7CEFC50630%2E1%7C.for.75883-77078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75883-77078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75883-77078.gi%7C284097003%7Cgb%7CEFC50630%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.for.75835-77141.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75835-77141.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75835-77141.gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.for.75880-77120.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75880-77120.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75880-77120.gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.for.75925-77129.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77129.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77129.gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086956%7Cgb%7CEFC40629%2E1%7C.for.75817-77225.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75817-77225.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75817-77225.gi%7C284086956%7Cgb%7CEFC40629%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090146%7Cgb%7CEFC43799%2E1%7C.for.75817-77162.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75817-77162.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75817-77162.gi%7C284090146%7Cgb%7CEFC43799%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082747%7Cgb%7CEFC36459%2E1%7C.for.75907-77084.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75907-77084.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75907-77084.gi%7C284082747%7Cgb%7CEFC36459%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097002%7Cgb%7CEFC50629%2E1%7C.for.75907-77108.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75907-77108.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75907-77108.gi%7C284097002%7Cgb%7CEFC50629%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.for.75922-77195.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77195.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77195.gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.for.75745-77108.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75745-77108.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75745-77108.gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.for.75835-77150.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75835-77150.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75835-77150.gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.for.75922-77126.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77126.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77126.gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087408%7Cgb%7CEFC41078%2E1%7C.for.75922-77078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77078.gi%7C284087408%7Cgb%7CEFC41078%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.for.75919-77162.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75919-77162.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75919-77162.gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.for.75913-77195.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75913-77195.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75913-77195.gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.for.75922-77135.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77135.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77135.gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.for.76000-77069.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.76000-77069.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.76000-77069.gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092204%7Cgb%7CEFC45847%2E1%7C.for.75856-77078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75856-77078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75856-77078.gi%7C284092204%7Cgb%7CEFC45847%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090154%7Cgb%7CEFC43807%2E1%7C.for.75817-77147.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75817-77147.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75817-77147.gi%7C284090154%7Cgb%7CEFC43807%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.for.75928-77132.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75928-77132.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75928-77132.gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082694%7Cgb%7CEFC36407%2E1%7C.for.75922-77162.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77162.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77162.gi%7C284082694%7Cgb%7CEFC36407%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.for.75574-77138.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75574-77138.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75574-77138.gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090243%7Cgb%7CEFC43896%2E1%7C.for.75895-77156.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75895-77156.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75895-77156.gi%7C284090243%7Cgb%7CEFC43896%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085724%7Cgb%7CEFC39406%2E1%7C.for.75922-77267.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77267.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77267.gi%7C284085724%7Cgb%7CEFC39406%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.for.75913-77078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75913-77078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75913-77078.gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092203%7Cgb%7CEFC45846%2E1%7C.for.75925-77102.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77102.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77102.gi%7C284092203%7Cgb%7CEFC45846%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.for.75931-77159.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75931-77159.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75931-77159.gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090143%7Cgb%7CEFC43796%2E1%7C.for.75817-77237.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75817-77237.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75817-77237.gi%7C284090143%7Cgb%7CEFC43796%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.for.75931-77408.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75931-77408.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75931-77408.gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096176%7Cgb%7CEFC49805%2E1%7C.for.75916-77168.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75916-77168.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75916-77168.gi%7C284096176%7Cgb%7CEFC49805%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085350%7Cgb%7CEFC39035%2E1%7C.for.75922-77111.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77111.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77111.gi%7C284085350%7Cgb%7CEFC39035%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087676%7Cgb%7CEFC41344%2E1%7C.for.75685-77141.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75685-77141.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75685-77141.gi%7C284087676%7Cgb%7CEFC41344%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.for.75922-77051.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77051.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77051.gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085335%7Cgb%7CEFC39020%2E1%7C.for.81508-83189.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.81508-83189.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.81508-83189.gi%7C284085335%7Cgb%7CEFC39020%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096729%7Cgb%7CEFC50356%2E1%7C.for.90990-95305.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.90990-95305.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.90990-95305.gi%7C284096729%7Cgb%7CEFC50356%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092459%7Cgb%7CEFC46101%2E1%7C.for.95606-96932.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.95606-96932.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.95606-96932.gi%7C284092459%7Cgb%7CEFC46101%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096805%7Cgb%7CEFC50432%2E1%7C.for.100142-102232.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.100142-102232.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.100142-102232.gi%7C284096805%7Cgb%7CEFC50432%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082010%7Cgb%7CEFC35809%2E1%7C.for.100359-101497.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.100359-101497.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.100359-101497.gi%7C284082010%7Cgb%7CEFC35809%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089472%7Cgb%7CEFC43129%2E1%7C.for.102769-104123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.102769-104123.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.102769-104123.gi%7C284089472%7Cgb%7CEFC43129%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086520%7Cgb%7CEFC40196%2E1%7C.for.102769-104123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.102769-104123.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.102769-104123.gi%7C284086520%7Cgb%7CEFC40196%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091621%7Cgb%7CEFC45267%2E1%7C.for.103802-104936.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.103802-104936.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.103802-104936.gi%7C284091621%7Cgb%7CEFC45267%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087655%7Cgb%7CEFC41323%2E1%7C.for.108344-109338.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108344-109338.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108344-109338.gi%7C284087655%7Cgb%7CEFC41323%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094750%7Cgb%7CEFC48383%2E1%7C.for.108338-109371.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108338-109371.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108338-109371.gi%7C284094750%7Cgb%7CEFC48383%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096189%7Cgb%7CEFC49818%2E1%7C.for.108344-109335.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108344-109335.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108344-109335.gi%7C284096189%7Cgb%7CEFC49818%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087657%7Cgb%7CEFC41325%2E1%7C.for.108344-109332.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108344-109332.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108344-109332.gi%7C284087657%7Cgb%7CEFC41325%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097268%7Cgb%7CEFC50895%2E1%7C.for.108329-109263.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108329-109263.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108329-109263.gi%7C284097268%7Cgb%7CEFC50895%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096576%7Cgb%7CEFC50204%2E1%7C.for.108338-110424.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108338-110424.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108338-110424.gi%7C284096576%7Cgb%7CEFC50204%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 10 ...processing 1 of 10 ...processing 2 of 10 ...processing 3 of 10 ...processing 4 of 10 ...processing 5 of 10 ...processing 6 of 10 ...processing 7 of 10 ...processing 8 of 10 ...processing 9 of 10 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:21 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:21 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:21 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.322-3855.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.322-3855.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.322-3855.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.18414-22960.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.18414-22960.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.18414-22960.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.39685-40550.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.39685-40550.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.39685-40550.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.51811-53604.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.51811-53604.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.51811-53604.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.58040-59318.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.58040-59318.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.58040-59318.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.63829-65696.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.63829-65696.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.63829-65696.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.68382-69612.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.68382-69612.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.68382-69612.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.73154-75180.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.73154-75180.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.73154-75180.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.76115-77208.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.76115-77208.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.76115-77208.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.80171-82989.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.80171-82989.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.80171-82989.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.95805-96732.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.95805-96732.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.95805-96732.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.97430-98476.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.97430-98476.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.97430-98476.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.99032-99862.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.99032-99862.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.99032-99862.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.100162-102050.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.100162-102050.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.100162-102050.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.108498-110231.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.108498-110231.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.108498-110231.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.3570-6760.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.3570-6760.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.3570-6760.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.7718-9025.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.7718-9025.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.7718-9025.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.15465-18322.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.15465-18322.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.15465-18322.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.22851-23731.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.22851-23731.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.22851-23731.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.24670-25942.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.24670-25942.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.24670-25942.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.27116-28077.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.27116-28077.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.27116-28077.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.36278-38872.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.36278-38872.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.36278-38872.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.41202-43976.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.41202-43976.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.41202-43976.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.45364-47868.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.45364-47868.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.45364-47868.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.48329-49159.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.48329-49159.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.48329-49159.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.50226-51227.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.50226-51227.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.50226-51227.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.53242-54694.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.53242-54694.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.53242-54694.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.55100-56260.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.55100-56260.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.55100-56260.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.62416-63418.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.62416-63418.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.62416-63418.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.67488-68278.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.67488-68278.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.67488-68278.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.91189-95105.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.91189-95105.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.91189-95105.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.102786-104736.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.102786-104736.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.102786-104736.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.110637-111517.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.110637-111517.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.110637-111517.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.111519-112463.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.111519-112463.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.111519-112463.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C7 Length: 134939 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:55 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:38 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:33 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:53 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:43 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:56 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:37 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:44 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:53 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:40 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:10 current j:0 j_size:10 current j:1 j_size:10 current j:2 j_size:10 current j:3 j_size:10 current j:4 j_size:10 current j:5 j_size:10 current j:6 j_size:10 current j:7 j_size:10 current j:8 j_size:10 current j:9 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C7.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C7.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:13 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:6 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4485%7Clate.for.48-1639.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.48-1639.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.48-1639.Ar_EST_120301b_rep_c4485%7Clate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6023%7Chypothetical.for.133-1450.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.133-1450.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.133-1450.Ar_EST_120301b_rep_c6023%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12513%7Cantifreeze.for.16-1223.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.16-1223.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.16-1223.Ar_EST_120301b_rep_c12513%7Cantifreeze.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5923%7Cubiquitin.for.9-1509.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.9-1509.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.9-1509.Ar_EST_120301b_rep_c5923%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16388%7Crr1bs47tf.for.3291-4350.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.3291-4350.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.3291-4350.Ar_EST_120301b_c16388%7Crr1bs47tf.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11420%7Cc-4.for.12132-13718.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.12132-13718.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.12132-13718.Ar_EST_120301b_rep_c11420%7Cc-4.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6787%7Cc-4.for.11988-13571.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.11988-13571.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.11988-13571.Ar_EST_120301b_rep_c6787%7Cc-4.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11905%7Calpha.for.28565-29972.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.28565-29972.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.28565-29972.Ar_EST_120301b_c11905%7Calpha.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13284%7Cvacuolar.for.41047-42400.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.41047-42400.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.41047-42400.Ar_EST_120301b_c13284%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1689%7Cvacuolar.for.41819-43964.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.41819-43964.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.41819-43964.Ar_EST_120301b_c1689%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10762%7Cvacuolar.for.41624-42922.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.41624-42922.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.41624-42922.Ar_EST_120301b_c10762%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1374%7Cbase.for.45520-46917.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.45520-46917.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.45520-46917.Ar_EST_120301b_c1374%7Cbase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14203%7Cprotein.for.47262-48388.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.47262-48388.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.47262-48388.Ar_EST_120301b_c14203%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9392%7Calpha.for.49898-51378.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.49898-51378.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.49898-51378.Ar_EST_120301b_c9392%7Calpha.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1168%7Cprobable.for.55493-56901.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.55493-56901.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.55493-56901.Ar_EST_120301b_c1168%7Cprobable.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12300%7Cp-type.for.54632-56292.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54632-56292.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54632-56292.Ar_EST_120301b_c12300%7Cp-type.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13768%7Cp-type.for.56376-58077.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.56376-58077.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.56376-58077.Ar_EST_120301b_c13768%7Cp-type.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1093%7Cbiotinidase.for.57625-59775.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.57625-59775.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.57625-59775.120301b_Contig1093%7Cbiotinidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13105%7Cchloride.for.60848-62090.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.60848-62090.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.60848-62090.Ar_EST_120301b_c13105%7Cchloride.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11503%7Cchloride.for.61480-62910.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.61480-62910.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.61480-62910.Ar_EST_120301b_c11503%7Cchloride.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10696%7Cdynein.for.63572-64525.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.63572-64525.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.63572-64525.Ar_EST_120301b_c10696%7Cdynein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14804%7Cbp072254.for.69102-70291.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.69102-70291.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.69102-70291.Ar_EST_120301b_c14804%7Cbp072254.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3050%7Cviral.for.69616-71615.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.69616-71615.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.69616-71615.Ar_EST_120301b_c3050%7Cviral.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1063%7Cpredicted.for.70835-72329.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.70835-72329.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.70835-72329.Ar_EST_120301b_c1063%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2507%7C---NA---.for.71805-73298.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.71805-73298.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.71805-73298.Ar_EST_120301b_c2507%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c217%7Cprotein.for.80145-81818.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.80145-81818.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.80145-81818.Ar_EST_120301b_c217%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9172%7Cprotein.for.81335-83480.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.81335-83480.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.81335-83480.Ar_EST_120301b_c9172%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17870%7Ct-cell.for.89208-90299.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.89208-90299.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.89208-90299.Ar_EST_120301b_c17870%7Ct-cell.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11765%7Csolanesyl.for.92442-93928.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.92442-93928.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.92442-93928.Ar_EST_120301b_c11765%7Csolanesyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2548%7Cprotein-tyrosine.for.96640-97650.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.96640-97650.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.96640-97650.Ar_EST_120301b_c2548%7Cprotein-tyrosine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20445%7Cpyridine.for.97523-98612.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.97523-98612.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.97523-98612.Ar_EST_120301b_rep_c20445%7Cpyridine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c129%7Cnadh.for.97314-99592.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.97314-99592.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.97314-99592.Ar_EST_120301b_c129%7Cnadh.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19430%7Ctim50p.for.99275-100655.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.99275-100655.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.99275-100655.Ar_EST_120301b_c19430%7Ctim50p.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9578%7Ctim50p.for.99070-100422.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.99070-100422.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.99070-100422.Ar_EST_120301b_c9578%7Ctim50p.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3058%7Cprotein.for.100740-102763.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.100740-102763.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.100740-102763.Ar_EST_120301b_c3058%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12267%7Cat3g52930-like.for.102247-103458.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.102247-103458.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.102247-103458.Ar_EST_120301b_c12267%7Cat3g52930-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3718%7Cdienelactone.for.103910-105498.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.103910-105498.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.103910-105498.Ar_EST_120301b_c3718%7Cdienelactone.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20209%7Cribosomal.for.106394-107638.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106394-107638.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106394-107638.Ar_EST_120301b_rep_c20209%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3985%7C40s.for.105944-107655.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.105944-107655.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.105944-107655.Ar_EST_120301b_c3985%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5446%7Cribosomal.for.106398-107634.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106398-107634.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106398-107634.Ar_EST_120301b_rep_c5446%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18562%7C40s.for.106159-107137.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106159-107137.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106159-107137.Ar_EST_120301b_c18562%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6169%7C40s.for.105976-107196.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.105976-107196.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.105976-107196.Ar_EST_120301b_rep_c6169%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4920%7C40s.for.106100-107215.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106100-107215.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106100-107215.Ar_EST_120301b_rep_c4920%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6109%7C40s.for.106031-107257.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106031-107257.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106031-107257.Ar_EST_120301b_rep_c6109%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c785%7C5.for.109154-110971.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.109154-110971.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.109154-110971.Ar_EST_120301b_c785%7C5.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12153%7Cpredicted.for.110571-111898.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.110571-111898.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.110571-111898.Ar_EST_120301b_c12153%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12867%7C---NA---.for.122238-124136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.122238-124136.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.122238-124136.Ar_EST_120301b_c12867%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2650%7Cconserved.for.125607-127233.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.125607-127233.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.125607-127233.Ar_EST_120301b_c2650%7Cconserved.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2689%7Cnitella_74953_lrc40900_c.for.129843-131563.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.129843-131563.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.129843-131563.Ar_EST_120301b_c2689%7Cnitella_74953_lrc40900_c.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9169%7Cring.for.129877-133148.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.129877-133148.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.129877-133148.Ar_EST_120301b_c9169%7Cring.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12191%7Ccls_c.for.129992-133148.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.129992-133148.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.129992-133148.Ar_EST_120301b_c12191%7Ccls_c.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:30 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:30 now processing 0 total clusters:30 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:30 now processing 0 total clusters:30 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:30 now processing 0 total clusters:30 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:30 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:30 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:30 now processing 0 total clusters:30 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:30 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:29 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:42 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:42 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:57 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:48 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:38 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:38 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:47 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:33 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:32 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083691%7Cgb%7CEFC37392%2E1%7C.for.12012-13671.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.12012-13671.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.12012-13671.gi%7C284083691%7Cgb%7CEFC37392%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096883%7Cgb%7CEFC50510%2E1%7C.for.12012-13644.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.12012-13644.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.12012-13644.gi%7C284096883%7Cgb%7CEFC50510%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089652%7Cgb%7CEFC43308%2E1%7C.for.28293-29887.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.28293-29887.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.28293-29887.gi%7C284089652%7Cgb%7CEFC43308%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084087%7Cgb%7CEFC37783%2E1%7C.for.30299-33450.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33450.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33450.gi%7C284084087%7Cgb%7CEFC37783%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082474%7Cgb%7CEFC36192%2E1%7C.for.30299-33114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33114.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33114.gi%7C284082474%7Cgb%7CEFC36192%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082092%7Cgb%7CEFC35872%2E1%7C.for.30299-33114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33114.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33114.gi%7C284082092%7Cgb%7CEFC35872%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085337%7Cgb%7CEFC39022%2E1%7C.for.30350-33114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30350-33114.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30350-33114.gi%7C284085337%7Cgb%7CEFC39022%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083266%7Cgb%7CEFC36971%2E1%7C.for.30299-33114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33114.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33114.gi%7C284083266%7Cgb%7CEFC36971%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083922%7Cgb%7CEFC37620%2E1%7C.for.30440-33144.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30440-33144.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30440-33144.gi%7C284083922%7Cgb%7CEFC37620%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089683%7Cgb%7CEFC43339%2E1%7C.for.30443-33114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30443-33114.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30443-33114.gi%7C284089683%7Cgb%7CEFC43339%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082314%7Cgb%7CEFC36048%2E1%7C.for.30299-33114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33114.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33114.gi%7C284082314%7Cgb%7CEFC36048%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093921%7Cgb%7CEFC47557%2E1%7C.for.30299-33183.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33183.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33183.gi%7C284093921%7Cgb%7CEFC47557%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082806%7Cgb%7CEFC36517%2E1%7C.for.30443-33066.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30443-33066.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30443-33066.gi%7C284082806%7Cgb%7CEFC36517%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082136%7Cgb%7CEFC35906%2E1%7C.for.30299-33183.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33183.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33183.gi%7C284082136%7Cgb%7CEFC35906%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085875%7Cgb%7CEFC39555%2E1%7C.for.30440-33108.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30440-33108.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30440-33108.gi%7C284085875%7Cgb%7CEFC39555%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080810%7Cgb%7CEFC35195%2E1%7C.for.30419-32517.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30419-32517.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30419-32517.gi%7C284080810%7Cgb%7CEFC35195%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090094%7Cgb%7CEFC43748%2E1%7C.for.34017-35008.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.34017-35008.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.34017-35008.gi%7C284090094%7Cgb%7CEFC43748%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088066%7Cgb%7CEFC41732%2E1%7C.for.40616-41691.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.40616-41691.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.40616-41691.gi%7C284088066%7Cgb%7CEFC41732%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088065%7Cgb%7CEFC41731%2E1%7C.for.40911-43775.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.40911-43775.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.40911-43775.gi%7C284088065%7Cgb%7CEFC41731%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089788%7Cgb%7CEFC43443%2E1%7C.for.54064-58018.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54064-58018.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54064-58018.gi%7C284089788%7Cgb%7CEFC43443%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088559%7Cgb%7CEFC42222%2E1%7C.for.54067-57919.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57919.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57919.gi%7C284088559%7Cgb%7CEFC42222%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092821%7Cgb%7CEFC46461%2E1%7C.for.54040-58018.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54040-58018.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54040-58018.gi%7C284092821%7Cgb%7CEFC46461%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083022%7Cgb%7CEFC36730%2E1%7C.for.54067-57955.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57955.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57955.gi%7C284083022%7Cgb%7CEFC36730%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093552%7Cgb%7CEFC47189%2E1%7C.for.54067-57922.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57922.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57922.gi%7C284093552%7Cgb%7CEFC47189%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085695%7Cgb%7CEFC39377%2E1%7C.for.54067-57922.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57922.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57922.gi%7C284085695%7Cgb%7CEFC39377%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085694%7Cgb%7CEFC39376%2E1%7C.for.54067-57922.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57922.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57922.gi%7C284085694%7Cgb%7CEFC39376%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082133%7Cgb%7CEFC35904%2E1%7C.for.56298-57955.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.56298-57955.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.56298-57955.gi%7C284082133%7Cgb%7CEFC35904%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091674%7Cgb%7CEFC45319%2E1%7C.for.65466-67930.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.65466-67930.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.65466-67930.gi%7C284091674%7Cgb%7CEFC45319%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091345%7Cgb%7CEFC44992%2E1%7C.for.67823-69659.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.67823-69659.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.67823-69659.gi%7C284091345%7Cgb%7CEFC44992%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093228%7Cgb%7CEFC46867%2E1%7C.for.67832-69371.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.67832-69371.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.67832-69371.gi%7C284093228%7Cgb%7CEFC46867%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090440%7Cgb%7CEFC44092%2E1%7C.for.81166-83419.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.81166-83419.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.81166-83419.gi%7C284090440%7Cgb%7CEFC44092%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095446%7Cgb%7CEFC49077%2E1%7C.for.81166-83413.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.81166-83413.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.81166-83413.gi%7C284095446%7Cgb%7CEFC49077%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095286%7Cgb%7CEFC48917%2E1%7C.for.81169-83440.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.81169-83440.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.81169-83440.gi%7C284095286%7Cgb%7CEFC48917%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.86027-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89034.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.for.86030-89022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89022.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89022.gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.for.86030-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.for.86033-89028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86033-89028.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86033-89028.gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.for.86027-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89034.gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.for.85979-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.85979-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.85979-89034.gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090673%7Cgb%7CEFC44323%2E1%7C.for.86069-88737.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86069-88737.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86069-88737.gi%7C284090673%7Cgb%7CEFC44323%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094669%7Cgb%7CEFC48302%2E1%7C.for.86030-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.gi%7C284094669%7Cgb%7CEFC48302%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.for.86036-89439.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89439.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89439.gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.for.86012-89022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86012-89022.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86012-89022.gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.for.86030-88998.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-88998.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-88998.gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.for.86027-89037.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89037.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89037.gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.for.86030-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090138%7Cgb%7CEFC43791%2E1%7C.for.86015-89466.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86015-89466.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86015-89466.gi%7C284090138%7Cgb%7CEFC43791%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.for.86027-89064.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89064.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89064.gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.for.86027-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89034.gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.for.86042-89022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86042-89022.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86042-89022.gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.for.86036-89028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89028.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89028.gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093864%7Cgb%7CEFC47500%2E1%7C.for.86030-89424.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89424.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89424.gi%7C284093864%7Cgb%7CEFC47500%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.for.86030-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091293%7Cgb%7CEFC44940%2E1%7C.for.86021-89028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86021-89028.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86021-89028.gi%7C284091293%7Cgb%7CEFC44940%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097003%7Cgb%7CEFC50630%2E1%7C.for.86036-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89034.gi%7C284097003%7Cgb%7CEFC50630%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.for.85994-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.85994-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.85994-89034.gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.for.86030-89037.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89037.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89037.gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090146%7Cgb%7CEFC43799%2E1%7C.for.86024-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86024-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86024-89034.gi%7C284090146%7Cgb%7CEFC43799%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088717%7Cgb%7CEFC42379%2E1%7C.for.86030-89028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89028.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89028.gi%7C284088717%7Cgb%7CEFC42379%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.for.85871-89097.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.85871-89097.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.85871-89097.gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.for.86021-89061.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86021-89061.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86021-89061.gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.for.86015-89097.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86015-89097.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86015-89097.gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.for.86033-89082.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86033-89082.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86033-89082.gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.for.86024-89061.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86024-89061.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86024-89061.gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.for.86024-89052.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86024-89052.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86024-89052.gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084506%7Cgb%7CEFC38198%2E1%7C.for.86036-89049.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89049.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89049.gi%7C284084506%7Cgb%7CEFC38198%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096530%7Cgb%7CEFC50158%2E1%7C.for.86051-89022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86051-89022.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86051-89022.gi%7C284096530%7Cgb%7CEFC50158%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.for.86033-89043.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86033-89043.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86033-89043.gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.for.86225-88791.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86225-88791.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86225-88791.gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086531%7Cgb%7CEFC40207%2E1%7C.for.86030-89439.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89439.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89439.gi%7C284086531%7Cgb%7CEFC40207%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090243%7Cgb%7CEFC43896%2E1%7C.for.86030-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.gi%7C284090243%7Cgb%7CEFC43896%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.for.86030-89487.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89487.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89487.gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.for.86036-89022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89022.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89022.gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.for.86063-89115.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86063-89115.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86063-89115.gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.for.86063-89037.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86063-89037.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86063-89037.gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091599%7Cgb%7CEFC45245%2E1%7C.for.86069-89040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86069-89040.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86069-89040.gi%7C284091599%7Cgb%7CEFC45245%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085299%7Cgb%7CEFC38984%2E1%7C.for.86027-89025.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89025.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89025.gi%7C284085299%7Cgb%7CEFC38984%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084169%7Cgb%7CEFC37864%2E1%7C.for.92442-94214.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.92442-94214.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.92442-94214.gi%7C284084169%7Cgb%7CEFC37864%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093150%7Cgb%7CEFC46789%2E1%7C.for.96856-97871.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.96856-97871.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.96856-97871.gi%7C284093150%7Cgb%7CEFC46789%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086033%7Cgb%7CEFC39712%2E1%7C.for.97180-99460.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.97180-99460.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.97180-99460.gi%7C284086033%7Cgb%7CEFC39712%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097005%7Cgb%7CEFC50632%2E1%7C.for.99012-100303.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.99012-100303.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.99012-100303.gi%7C284097005%7Cgb%7CEFC50632%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094875%7Cgb%7CEFC48508%2E1%7C.for.100822-102855.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.100822-102855.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.100822-102855.gi%7C284094875%7Cgb%7CEFC48508%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090837%7Cgb%7CEFC44487%2E1%7C.for.101080-102267.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.101080-102267.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.101080-102267.gi%7C284090837%7Cgb%7CEFC44487%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087994%7Cgb%7CEFC41660%2E1%7C.for.106048-107651.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106048-107651.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106048-107651.gi%7C284087994%7Cgb%7CEFC41660%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:16 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:16 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:16 now processing 0 total clusters:16 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:13 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 ...processing 0 of 25 ...processing 1 of 25 ...processing 2 of 25 ...processing 3 of 25 ...processing 4 of 25 ...processing 5 of 25 ...processing 6 of 25 ...processing 7 of 25 ...processing 8 of 25 ...processing 9 of 25 ...processing 10 of 25 ...processing 11 of 25 ...processing 12 of 25 ...processing 13 of 25 ...processing 14 of 25 ...processing 15 of 25 ...processing 16 of 25 ...processing 17 of 25 ...processing 18 of 25 ...processing 19 of 25 ...trimming the rest total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:21 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:21 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 20 ...processing 1 of 20 ...processing 2 of 20 ...processing 3 of 20 ...processing 4 of 20 ...processing 5 of 20 ...processing 6 of 20 ...processing 7 of 20 ...processing 8 of 20 ...processing 9 of 20 ...processing 10 of 20 ...processing 11 of 20 ...processing 12 of 20 ...processing 13 of 20 ...processing 14 of 20 ...processing 15 of 20 ...processing 16 of 20 ...processing 17 of 20 ...processing 18 of 20 ...processing 19 of 20 ...trimming the rest ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:14 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.237-1449.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.237-1449.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.237-1449.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.3490-4150.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.3490-4150.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.3490-4150.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.12187-13518.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.12187-13518.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.12187-13518.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.30498-32914.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.30498-32914.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.30498-32914.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.40815-43764.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.40815-43764.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.40815-43764.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.45719-46717.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.45719-46717.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.45719-46717.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.54239-57877.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.54239-57877.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.54239-57877.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.65665-67730.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.65665-67730.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.65665-67730.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.69301-72129.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.69301-72129.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.69301-72129.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.86214-88915.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.86214-88915.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.86214-88915.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.92599-94014.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.92599-94014.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.92599-94014.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.96839-97671.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.96839-97671.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.96839-97671.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.100939-102655.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.100939-102655.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.100939-102655.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.109353-111698.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.109353-111698.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.109353-111698.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.434-1250.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.434-1250.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.434-1250.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.28492-29772.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.28492-29772.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.28492-29772.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.34216-34808.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.34216-34808.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.34216-34808.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.50087-51178.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.50087-51178.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.50087-51178.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.57824-59575.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.57824-59575.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.57824-59575.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.61045-61947.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.61045-61947.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.61045-61947.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.72004-73098.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.72004-73098.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.72004-73098.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.81365-83280.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.81365-83280.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.81365-83280.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.89359-90195.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.89359-90195.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.89359-90195.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.97379-100462.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.97379-100462.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.97379-100462.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.104109-105298.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.104109-105298.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.104109-105298.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.106175-107451.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.106175-107451.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.106175-107451.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C8 Length: 71281 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:3 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:5 current j:0 j_size:5 current j:1 j_size:5 current j:2 j_size:5 current j:3 j_size:5 current j:4 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C8.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C8.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11569%7Crna-binding.for.1136-2408.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.1136-2408.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.1136-2408.Ar_EST_120301b_c11569%7Crna-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1047%7Cdual.for.5428-7005.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.5428-7005.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.5428-7005.120301b_Contig1047%7Cdual.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9703%7Cwd40.for.7390-8926.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.7390-8926.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.7390-8926.Ar_EST_120301b_c9703%7Cwd40.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig523%7Cmetaxin.for.9216-10932.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.9216-10932.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.9216-10932.120301b_Contig523%7Cmetaxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14860%7Cmetaxin-3.for.9823-11135.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.9823-11135.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.9823-11135.Ar_EST_120301b_c14860%7Cmetaxin-3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17966%7Cmitogen-activated.for.10560-12367.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.10560-12367.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.10560-12367.Ar_EST_120301b_c17966%7Cmitogen-activated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11899%7Cmix.for.12967-14078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.12967-14078.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.12967-14078.Ar_EST_120301b_c11899%7Cmix.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14282%7C---NA---.for.13676-14878.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.13676-14878.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.13676-14878.Ar_EST_120301b_c14282%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3639%7C0298671.for.14112-16868.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.14112-16868.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.14112-16868.Ar_EST_120301b_c3639%7C0298671.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8179%7Cnormalized.for.16113-17345.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.16113-17345.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.16113-17345.Ar_EST_120301b_rep_c8179%7Cnormalized.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2878%7Cacyloxyacyl.for.18765-20718.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.18765-20718.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.18765-20718.Ar_EST_120301b_c2878%7Cacyloxyacyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig944%7Cmitochondrial.for.20293-21752.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.20293-21752.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.20293-21752.120301b_Contig944%7Cmitochondrial.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14537%7C---NA---.for.25006-25909.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.25006-25909.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.25006-25909.Ar_EST_120301b_c14537%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig939%7Cacid.for.24454-25816.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.24454-25816.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.24454-25816.120301b_Contig939%7Cacid.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c944%7Cest_lsaa_evv_1238232.for.26963-28583.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.26963-28583.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.26963-28583.Ar_EST_120301b_c944%7Cest_lsaa_evv_1238232.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14759%7C---NA---.for.29307-30510.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.29307-30510.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.29307-30510.Ar_EST_120301b_c14759%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12291%7Cest03036.for.28979-30318.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.28979-30318.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.28979-30318.Ar_EST_120301b_c12291%7Cest03036.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16855%7Cankyrin.for.32668-33901.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.32668-33901.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.32668-33901.Ar_EST_120301b_c16855%7Cankyrin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2487%7Ccawz.for.36801-38241.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.36801-38241.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.36801-38241.Ar_EST_120301b_c2487%7Ccawz.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9594%7Cy1842_erwct.for.39726-41093.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.39726-41093.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.39726-41093.Ar_EST_120301b_c9594%7Cy1842_erwct.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4074%7Cpredicted.for.44695-46110.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.44695-46110.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.44695-46110.Ar_EST_120301b_rep_c4074%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12747%7C---NA---.for.44884-46065.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.44884-46065.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.44884-46065.Ar_EST_120301b_rep_c12747%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17783%7Cadenylate.for.45407-46440.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.45407-46440.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.45407-46440.Ar_EST_120301b_rep_c17783%7Cadenylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5659%7Cadenylate.for.45408-46915.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.45408-46915.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.45408-46915.Ar_EST_120301b_rep_c5659%7Cadenylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4208%7Cadenylate.for.45358-46915.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.45358-46915.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.45358-46915.Ar_EST_120301b_rep_c4208%7Cadenylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c897%7C3.for.48834-50442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.48834-50442.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.48834-50442.Ar_EST_120301b_c897%7C3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c535%7Cubiquitin-specific.for.52735-53854.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.52735-53854.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.52735-53854.Ar_EST_120301b_c535%7Cubiquitin-specific.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c876%7Cprotein.for.51138-54171.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.51138-54171.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.51138-54171.Ar_EST_120301b_c876%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19537%7Cubiquitin-specific.for.51261-52540.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.51261-52540.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.51261-52540.Ar_EST_120301b_rep_c19537%7Cubiquitin-specific.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6146%7Cprotein.for.54235-55373.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54235-55373.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54235-55373.Ar_EST_120301b_rep_c6146%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig907%7Cubiquitin-conjugating.for.54109-55392.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54109-55392.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54109-55392.120301b_Contig907%7Cubiquitin-conjugating.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1366%7Cphospholipid-transporting.for.55948-58049.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55948-58049.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55948-58049.120301b_Contig1366%7Cphospholipid-transporting.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c820%7Caminophospholipid.for.57236-58683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.57236-58683.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.57236-58683.Ar_EST_120301b_c820%7Caminophospholipid.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18642%7Cprotein.for.55305-57062.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55305-57062.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55305-57062.Ar_EST_120301b_c18642%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1892%7Cprobable.for.54733-56157.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54733-56157.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54733-56157.Ar_EST_120301b_c1892%7Cprobable.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10313%7Cphospholipid-transporting.for.58014-59073.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.58014-59073.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.58014-59073.Ar_EST_120301b_c10313%7Cphospholipid-transporting.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15133%7Cpredicted.for.60971-62209.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.60971-62209.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.60971-62209.Ar_EST_120301b_c15133%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3416%7Cprotein.for.65768-67717.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.65768-67717.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.65768-67717.Ar_EST_120301b_c3416%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11057%7Cupf0061.for.66140-67643.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.66140-67643.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.66140-67643.Ar_EST_120301b_c11057%7Cupf0061.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20360%7Cacid.for.68216-69457.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68216-69457.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68216-69457.Ar_EST_120301b_rep_c20360%7Cacid.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12404%7Cacid.for.68179-69815.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68179-69815.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68179-69815.Ar_EST_120301b_rep_c12404%7Cacid.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig348%7Cacid.for.68030-69951.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68030-69951.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68030-69951.120301b_Contig348%7Cacid.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6228%7Ceri1.for.69349-70801.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.69349-70801.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.69349-70801.Ar_EST_120301b_rep_c6228%7Ceri1.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:35 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:34 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:34 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:40 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:38 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:27 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:33 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:29 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:33 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085834%7Cgb%7CEFC39515%2E1%7C.for.575-2502.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.575-2502.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.575-2502.gi%7C284085834%7Cgb%7CEFC39515%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C18033042%7Cgb%7CAAL56965%2E1%7CAF322049_1.for.3535-5826.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3535-5826.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3535-5826.gi%7C18033042%7Cgb%7CAAL56965%2E1%7CAF322049_1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094205%7Cgb%7CEFC47840%2E1%7C.for.3427-5844.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3427-5844.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3427-5844.gi%7C284094205%7Cgb%7CEFC47840%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083921%7Cgb%7CEFC37619%2E1%7C.for.3427-5808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3427-5808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3427-5808.gi%7C284083921%7Cgb%7CEFC37619%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094210%7Cgb%7CEFC47845%2E1%7C.for.3439-5862.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3439-5862.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3439-5862.gi%7C284094210%7Cgb%7CEFC47845%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089748%7Cgb%7CEFC43404%2E1%7C.for.3415-5961.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3415-5961.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3415-5961.gi%7C284089748%7Cgb%7CEFC43404%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095071%7Cgb%7CEFC48703%2E1%7C.for.6332-7440.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.6332-7440.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.6332-7440.gi%7C284095071%7Cgb%7CEFC48703%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083404%7Cgb%7CEFC37108%2E1%7C.for.7147-8987.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.7147-8987.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.7147-8987.gi%7C284083404%7Cgb%7CEFC37108%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089145%7Cgb%7CEFC42804%2E1%7C.for.10634-12660.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.10634-12660.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.10634-12660.gi%7C284089145%7Cgb%7CEFC42804%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095262%7Cgb%7CEFC48893%2E1%7C.for.11987-13041.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11987-13041.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11987-13041.gi%7C284095262%7Cgb%7CEFC48893%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091315%7Cgb%7CEFC44962%2E1%7C.for.11954-13208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11954-13208.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11954-13208.gi%7C284091315%7Cgb%7CEFC44962%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090821%7Cgb%7CEFC44471%2E1%7C.for.11948-13199.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11948-13199.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11948-13199.gi%7C284090821%7Cgb%7CEFC44471%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090721%7Cgb%7CEFC44371%2E1%7C.for.12086-13205.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.12086-13205.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.12086-13205.gi%7C284090721%7Cgb%7CEFC44371%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094778%7Cgb%7CEFC48411%2E1%7C.for.12038-13029.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.12038-13029.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.12038-13029.gi%7C284094778%7Cgb%7CEFC48411%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089020%7Cgb%7CEFC42680%2E1%7C.for.11930-13208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13208.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13208.gi%7C284089020%7Cgb%7CEFC42680%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094435%7Cgb%7CEFC48069%2E1%7C.for.11930-13041.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13041.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13041.gi%7C284094435%7Cgb%7CEFC48069%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084285%7Cgb%7CEFC37979%2E1%7C.for.11930-13208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13208.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13208.gi%7C284084285%7Cgb%7CEFC37979%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085637%7Cgb%7CEFC39319%2E1%7C.for.11930-13041.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13041.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13041.gi%7C284085637%7Cgb%7CEFC39319%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090223%7Cgb%7CEFC43876%2E1%7C.for.11948-13044.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11948-13044.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11948-13044.gi%7C284090223%7Cgb%7CEFC43876%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089016%7Cgb%7CEFC42676%2E1%7C.for.11951-13041.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11951-13041.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11951-13041.gi%7C284089016%7Cgb%7CEFC42676%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087164%7Cgb%7CEFC40836%2E1%7C.for.11939-13017.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11939-13017.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11939-13017.gi%7C284087164%7Cgb%7CEFC40836%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093747%7Cgb%7CEFC47384%2E1%7C.for.11930-13107.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13107.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13107.gi%7C284093747%7Cgb%7CEFC47384%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096426%7Cgb%7CEFC50054%2E1%7C.for.12095-13199.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.12095-13199.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.12095-13199.gi%7C284096426%7Cgb%7CEFC50054%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089587%7Cgb%7CEFC43244%2E1%7C.for.18781-20717.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.18781-20717.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.18781-20717.gi%7C284089587%7Cgb%7CEFC43244%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085037%7Cgb%7CEFC38724%2E1%7C.for.19961-21784.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.19961-21784.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.19961-21784.gi%7C284085037%7Cgb%7CEFC38724%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083566%7Cgb%7CEFC37268%2E1%7C.for.22837-24732.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.22837-24732.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.22837-24732.gi%7C284083566%7Cgb%7CEFC37268%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089709%7Cgb%7CEFC43365%2E1%7C.for.24184-25881.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.24184-25881.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.24184-25881.gi%7C284089709%7Cgb%7CEFC43365%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093351%7Cgb%7CEFC46989%2E1%7C.for.34683-36673.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.34683-36673.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.34683-36673.gi%7C284093351%7Cgb%7CEFC46989%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084118%7Cgb%7CEFC37814%2E1%7C.for.44305-45479.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.44305-45479.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.44305-45479.gi%7C284084118%7Cgb%7CEFC37814%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085702%7Cgb%7CEFC39384%2E1%7C.for.45412-46883.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.45412-46883.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.45412-46883.gi%7C284085702%7Cgb%7CEFC39384%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085662%7Cgb%7CEFC39344%2E1%7C.for.46121-48984.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.46121-48984.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.46121-48984.gi%7C284085662%7Cgb%7CEFC39344%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090469%7Cgb%7CEFC44121%2E1%7C.for.51128-54445.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.51128-54445.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.51128-54445.gi%7C284090469%7Cgb%7CEFC44121%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091315%7Cgb%7CEFC44962%2E1%7C.for.54190-55421.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54190-55421.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54190-55421.gi%7C284091315%7Cgb%7CEFC44962%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090821%7Cgb%7CEFC44471%2E1%7C.for.54184-55409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54184-55409.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54184-55409.gi%7C284090821%7Cgb%7CEFC44471%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089020%7Cgb%7CEFC42680%2E1%7C.for.54163-55403.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54163-55403.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54163-55403.gi%7C284089020%7Cgb%7CEFC42680%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094435%7Cgb%7CEFC48069%2E1%7C.for.54166-55394.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54166-55394.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54166-55394.gi%7C284094435%7Cgb%7CEFC48069%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084285%7Cgb%7CEFC37979%2E1%7C.for.54166-55403.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54166-55403.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54166-55403.gi%7C284084285%7Cgb%7CEFC37979%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085637%7Cgb%7CEFC39319%2E1%7C.for.54166-55391.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54166-55391.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54166-55391.gi%7C284085637%7Cgb%7CEFC39319%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090223%7Cgb%7CEFC43876%2E1%7C.for.54184-55418.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54184-55418.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54184-55418.gi%7C284090223%7Cgb%7CEFC43876%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093747%7Cgb%7CEFC47384%2E1%7C.for.54166-55400.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54166-55400.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54166-55400.gi%7C284093747%7Cgb%7CEFC47384%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096426%7Cgb%7CEFC50054%2E1%7C.for.54334-55418.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54334-55418.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54334-55418.gi%7C284096426%7Cgb%7CEFC50054%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089788%7Cgb%7CEFC43443%2E1%7C.for.55055-59474.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55055-59474.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55055-59474.gi%7C284089788%7Cgb%7CEFC43443%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092821%7Cgb%7CEFC46461%2E1%7C.for.54815-59459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54815-59459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54815-59459.gi%7C284092821%7Cgb%7CEFC46461%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083022%7Cgb%7CEFC36730%2E1%7C.for.55181-59459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55181-59459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55181-59459.gi%7C284083022%7Cgb%7CEFC36730%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093552%7Cgb%7CEFC47189%2E1%7C.for.55133-59459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55133-59459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55133-59459.gi%7C284093552%7Cgb%7CEFC47189%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085695%7Cgb%7CEFC39377%2E1%7C.for.54833-59474.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54833-59474.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54833-59474.gi%7C284085695%7Cgb%7CEFC39377%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082133%7Cgb%7CEFC35904%2E1%7C.for.55181-56826.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55181-56826.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55181-56826.gi%7C284082133%7Cgb%7CEFC35904%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085871%7Cgb%7CEFC39552%2E1%7C.for.68157-69939.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68157-69939.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68157-69939.gi%7C284085871%7Cgb%7CEFC39552%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084771%7Cgb%7CEFC38460%2E1%7C.for.68157-69939.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68157-69939.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68157-69939.gi%7C284084771%7Cgb%7CEFC38460%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088755%7Cgb%7CEFC42417%2E1%7C.for.68157-69939.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68157-69939.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68157-69939.gi%7C284088755%7Cgb%7CEFC42417%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089891%7Cgb%7CEFC43546%2E1%7C.for.68157-69939.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68157-69939.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68157-69939.gi%7C284089891%7Cgb%7CEFC43546%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096470%7Cgb%7CEFC50098%2E1%7C.for.69373-70748.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.69373-70748.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.69373-70748.gi%7C284096470%7Cgb%7CEFC50098%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092674%7Cgb%7CEFC46315%2E1%7C.for.69373-70766.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.69373-70766.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.69373-70766.gi%7C284092674%7Cgb%7CEFC46315%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:17 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:17 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:10 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:10 now processing 0 total clusters:10 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:10 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:13 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:13 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:13 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.3614-7246.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.3614-7246.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.3614-7246.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.9990-12460.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.9990-12460.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.9990-12460.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.13126-13878.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.13126-13878.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.13126-13878.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.16310-17234.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.16310-17234.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.16310-17234.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.18964-20518.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.18964-20518.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.18964-20518.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.24383-25709.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.24383-25709.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.24383-25709.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.29178-30310.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.29178-30310.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.29178-30310.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.32867-33701.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.32867-33701.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.32867-33701.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.34864-36473.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.34864-36473.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.34864-36473.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.39925-40893.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.39925-40893.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.39925-40893.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.44894-46715.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.44894-46715.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.44894-46715.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.61156-62009.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.61156-62009.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.61156-62009.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.68225-70601.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.68225-70601.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.68225-70601.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.774-2302.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.774-2302.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.774-2302.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.7589-8726.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.7589-8726.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.7589-8726.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.12129-13008.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.12129-13008.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.12129-13008.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.20160-21584.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.20160-21584.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.20160-21584.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.27162-28383.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.27162-28383.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.27162-28383.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.37000-38041.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.37000-38041.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.37000-38041.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.44504-45279.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.44504-45279.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.44504-45279.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.46320-48784.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.46320-48784.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.46320-48784.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.49033-50262.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.49033-50262.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.49033-50262.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.51327-54245.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.51327-54245.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.51327-54245.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.54308-59274.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.54308-59274.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.54308-59274.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.65959-67517.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.65959-67517.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.65959-67517.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C9 Length: 143137 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:54 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:66 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:41 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:64 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:58 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:64 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:49 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:63 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:57 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:57 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:6 current j:0 j_size:6 current j:1 j_size:6 current j:2 j_size:6 current j:3 j_size:6 current j:4 j_size:6 current j:5 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C9.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C9.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:10 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:10 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:4 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2247%7Cm7g%285.for.2328-3644.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.2328-3644.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.2328-3644.Ar_EST_120301b_c2247%7Cm7g%285.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1181%7Cglutaminase.for.3456-5008.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.3456-5008.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.3456-5008.Ar_EST_120301b_c1181%7Cglutaminase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17708%7Ccalcium-dependent.for.4667-5932.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.4667-5932.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.4667-5932.Ar_EST_120301b_c17708%7Ccalcium-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18654%7Chistone.for.7274-8455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7274-8455.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7274-8455.Ar_EST_120301b_rep_c18654%7Chistone.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20047%7Chistone.for.7291-8488.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7291-8488.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7291-8488.Ar_EST_120301b_rep_c20047%7Chistone.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15057%7Chypothetical.for.8269-9793.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.8269-9793.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.8269-9793.Ar_EST_120301b_c15057%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11519%7Ccarboxylesterase.for.15701-17156.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.15701-17156.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.15701-17156.Ar_EST_120301b_c11519%7Ccarboxylesterase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12514%7Cic0aaa79dd02rm1.for.20388-21618.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.20388-21618.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.20388-21618.Ar_EST_120301b_c12514%7Cic0aaa79dd02rm1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c122%7Cprotein.for.23727-25878.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.23727-25878.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.23727-25878.Ar_EST_120301b_c122%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig707%7Cstructure.for.23281-25022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.23281-25022.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.23281-25022.120301b_Contig707%7Cstructure.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig744%7Cvesicle.for.27994-29515.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.27994-29515.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.27994-29515.120301b_Contig744%7Cvesicle.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1993%7Ccof-like.for.30494-31813.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.30494-31813.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.30494-31813.Ar_EST_120301b_c1993%7Ccof-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11129%7Csl_.for.34342-35297.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.34342-35297.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.34342-35297.Ar_EST_120301b_rep_c11129%7Csl_.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17985%7Cheat.for.35244-36515.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35244-36515.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35244-36515.Ar_EST_120301b_c17985%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18115%7C---NA---.for.38253-39152.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.38253-39152.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.38253-39152.Ar_EST_120301b_c18115%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10295%7Cgh_hypt_01-01-10r_h06_.for.43281-44143.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.43281-44143.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.43281-44143.Ar_EST_120301b_c10295%7Cgh_hypt_01-01-10r_h06_.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5908%7Cest154.for.44564-45707.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44564-45707.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44564-45707.Ar_EST_120301b_rep_c5908%7Cest154.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17536%7Cace00011780.for.44608-45707.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44608-45707.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44608-45707.Ar_EST_120301b_rep_c17536%7Cace00011780.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19922%7Csbay-f90.for.45128-46080.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.45128-46080.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.45128-46080.Ar_EST_120301b_rep_c19922%7Csbay-f90.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18817%7Ccdn38p0008e01.for.44704-45722.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44704-45722.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44704-45722.Ar_EST_120301b_rep_c18817%7Ccdn38p0008e01.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13131%7Clucilia.for.44577-45900.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44577-45900.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44577-45900.Ar_EST_120301b_rep_c13131%7Clucilia.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7193%7Csoybean.for.44565-45685.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44565-45685.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44565-45685.Ar_EST_120301b_rep_c7193%7Csoybean.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig645%7Ccytochrome.for.44685-46267.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44685-46267.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44685-46267.120301b_Contig645%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7085%7Cfq079731.for.44762-45838.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44762-45838.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44762-45838.Ar_EST_120301b_rep_c7085%7Cfq079731.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig637%7Cest154.for.44568-45722.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44568-45722.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44568-45722.120301b_Contig637%7Cest154.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7059%7Cfp515931.for.44757-46264.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44757-46264.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44757-46264.Ar_EST_120301b_rep_c7059%7Cfp515931.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig630%7Chypothetical.for.44687-45807.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44687-45807.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44687-45807.120301b_Contig630%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17959%7Cms1-0010t-d100-c05-.for.45973-46909.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.45973-46909.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.45973-46909.Ar_EST_120301b_c17959%7Cms1-0010t-d100-c05-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13118%7C---NA---.for.46737-48076.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.46737-48076.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.46737-48076.Ar_EST_120301b_c13118%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19997%7Cendonuclease.for.49277-50751.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.49277-50751.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.49277-50751.Ar_EST_120301b_c19997%7Cendonuclease.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7711%7Cendonuclease.for.49011-50427.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.49011-50427.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.49011-50427.Ar_EST_120301b_c7711%7Cendonuclease.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1977%7Cendonuclease.for.49186-50532.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.49186-50532.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.49186-50532.Ar_EST_120301b_c1977%7Cendonuclease.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18660%7Cendonuclease.for.49180-50761.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.49180-50761.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.49180-50761.Ar_EST_120301b_c18660%7Cendonuclease.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14465%7Cpredicted.for.61002-62245.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.61002-62245.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.61002-62245.Ar_EST_120301b_c14465%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20376%7Cprotein.for.67849-70497.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.67849-70497.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.67849-70497.Ar_EST_120301b_c20376%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15791%7Cmoobi53tf.for.71085-72566.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.71085-72566.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.71085-72566.Ar_EST_120301b_c15791%7Cmoobi53tf.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12677%7Cmulti-sensor.for.76311-78090.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.76311-78090.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.76311-78090.Ar_EST_120301b_c12677%7Cmulti-sensor.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3335%7Caerobic.for.77895-79314.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.77895-79314.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.77895-79314.Ar_EST_120301b_c3335%7Caerobic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9381%7Chistidine.for.78583-79990.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.78583-79990.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.78583-79990.Ar_EST_120301b_c9381%7Chistidine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8780%7Cccgo.for.83976-85494.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.83976-85494.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.83976-85494.Ar_EST_120301b_c8780%7Cccgo.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10994%7Cct751907.for.87695-88589.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.87695-88589.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.87695-88589.Ar_EST_120301b_c10994%7Cct751907.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18336%7C---NA---.for.95445-96809.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.95445-96809.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.95445-96809.Ar_EST_120301b_c18336%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4188%7Chistone.for.101375-103374.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.101375-103374.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.101375-103374.Ar_EST_120301b_rep_c4188%7Chistone.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5666%7Cc-terminal.for.101564-103377.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.101564-103377.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.101564-103377.Ar_EST_120301b_rep_c5666%7Cc-terminal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19411%7C60s.for.101822-102850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.101822-102850.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.101822-102850.Ar_EST_120301b_rep_c19411%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15541%7Ctyrosyl-trna.for.104055-105009.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.104055-105009.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.104055-105009.Ar_EST_120301b_rep_c15541%7Ctyrosyl-trna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2608%7Ccarboxypeptidase.for.102704-105003.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.102704-105003.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.102704-105003.Ar_EST_120301b_c2608%7Ccarboxypeptidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19821%7Cprotein.for.104883-106741.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.104883-106741.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.104883-106741.Ar_EST_120301b_c19821%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8714%7Cfs351607.for.107515-109235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.107515-109235.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.107515-109235.Ar_EST_120301b_c8714%7Cfs351607.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1151%7Cprotein.for.109075-110229.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.109075-110229.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.109075-110229.Ar_EST_120301b_c1151%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8321%7Chypothetical.for.113081-114435.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.113081-114435.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.113081-114435.Ar_EST_120301b_c8321%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18042%7Cmembrane-associated.for.114907-116209.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.114907-116209.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.114907-116209.Ar_EST_120301b_c18042%7Cmembrane-associated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9130%7Chypothetical.for.122599-123971.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.122599-123971.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.122599-123971.Ar_EST_120301b_rep_c9130%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3158%7Catp-dependent.for.130435-132491.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.130435-132491.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.130435-132491.Ar_EST_120301b_c3158%7Catp-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16159%7Cpentapeptide.for.127438-128733.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.127438-128733.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.127438-128733.Ar_EST_120301b_c16159%7Cpentapeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17324%7Cdeah-box.for.129804-131312.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.129804-131312.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.129804-131312.Ar_EST_120301b_c17324%7Cdeah-box.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13668%7Cpentapeptide.for.126833-134289.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.126833-134289.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.126833-134289.Ar_EST_120301b_c13668%7Cpentapeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18239%7Cprotein.for.134008-135254.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.134008-135254.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.134008-135254.Ar_EST_120301b_c18239%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14682%7Cfy377012.for.134325-135441.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.134325-135441.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.134325-135441.Ar_EST_120301b_c14682%7Cfy377012.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1054%7Creverse.for.137097-139562.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.137097-139562.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.137097-139562.120301b_Contig1054%7Creverse.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig87%7Creverse.for.137443-141840.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.137443-141840.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.137443-141840.120301b_Contig87%7Creverse.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1127%7Csite-specific.for.138478-140457.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.138478-140457.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.138478-140457.Ar_EST_120301b_c1127%7Csite-specific.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11365%7C---NA---.for.140516-141818.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.140516-141818.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.140516-141818.Ar_EST_120301b_c11365%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1151%7Cprotein.for.139510-140849.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.139510-140849.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.139510-140849.Ar_EST_120301b_c1151%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15418%7C0173437.for.141397-142458.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.141397-142458.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.141397-142458.Ar_EST_120301b_c15418%7C0173437.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1468%7Cfy881664.for.141888-143137.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.141888-143137.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.141888-143137.Ar_EST_120301b_c1468%7Cfy881664.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17518%7C1098310.for.141666-143078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.141666-143078.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.141666-143078.Ar_EST_120301b_c17518%7C1098310.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:35 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:35 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:34 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:29 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:40 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:54 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:41 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:53 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:55 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:34 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:30 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096617%7Cgb%7CEFC50245%2E1%7C.for.3766-5632.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.3766-5632.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.3766-5632.gi%7C284096617%7Cgb%7CEFC50245%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085117%7Cgb%7CEFC38803%2E1%7C.for.7281-8482.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7281-8482.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7281-8482.gi%7C284085117%7Cgb%7CEFC38803%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094028%7Cgb%7CEFC47663%2E1%7C.for.7281-8437.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7281-8437.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7281-8437.gi%7C284094028%7Cgb%7CEFC47663%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096335%7Cgb%7CEFC49963%2E1%7C.for.7281-8476.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7281-8476.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7281-8476.gi%7C284096335%7Cgb%7CEFC49963%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083146%7Cgb%7CEFC36852%2E1%7C.for.7272-8479.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7272-8479.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7272-8479.gi%7C284083146%7Cgb%7CEFC36852%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096073%7Cgb%7CEFC49702%2E1%7C.for.7272-8479.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7272-8479.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7272-8479.gi%7C284096073%7Cgb%7CEFC49702%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083449%7Cgb%7CEFC37152%2E1%7C.for.7275-8479.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7275-8479.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7275-8479.gi%7C284083449%7Cgb%7CEFC37152%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090015%7Cgb%7CEFC43669%2E1%7C.for.7518-8467.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7518-8467.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7518-8467.gi%7C284090015%7Cgb%7CEFC43669%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088656%7Cgb%7CEFC42318%2E1%7C.for.7272-8479.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7272-8479.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7272-8479.gi%7C284088656%7Cgb%7CEFC42318%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082495%7Cgb%7CEFC36212%2E1%7C.for.16753-17813.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.16753-17813.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.16753-17813.gi%7C284082495%7Cgb%7CEFC36212%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085727%7Cgb%7CEFC39409%2E1%7C.for.23366-25512.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.23366-25512.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.23366-25512.gi%7C284085727%7Cgb%7CEFC39409%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081155%7Cgb%7CEFC35313%2E1%7C.for.31897-33191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33191.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33191.gi%7C284081155%7Cgb%7CEFC35313%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092983%7Cgb%7CEFC46623%2E1%7C.for.31897-33191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33191.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33191.gi%7C284092983%7Cgb%7CEFC46623%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096875%7Cgb%7CEFC50502%2E1%7C.for.31933-33185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31933-33185.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31933-33185.gi%7C284096875%7Cgb%7CEFC50502%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090267%7Cgb%7CEFC43920%2E1%7C.for.31891-33125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31891-33125.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31891-33125.gi%7C284090267%7Cgb%7CEFC43920%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093592%7Cgb%7CEFC47229%2E1%7C.for.31933-33155.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31933-33155.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31933-33155.gi%7C284093592%7Cgb%7CEFC47229%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089692%7Cgb%7CEFC43348%2E1%7C.for.31933-33176.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31933-33176.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31933-33176.gi%7C284089692%7Cgb%7CEFC43348%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093109%7Cgb%7CEFC46748%2E1%7C.for.31933-33137.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31933-33137.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31933-33137.gi%7C284093109%7Cgb%7CEFC46748%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088464%7Cgb%7CEFC42127%2E1%7C.for.31885-33191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31885-33191.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31885-33191.gi%7C284088464%7Cgb%7CEFC42127%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085514%7Cgb%7CEFC39197%2E1%7C.for.31897-33185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33185.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33185.gi%7C284085514%7Cgb%7CEFC39197%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094883%7Cgb%7CEFC48516%2E1%7C.for.31897-33185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33185.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33185.gi%7C284094883%7Cgb%7CEFC48516%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095464%7Cgb%7CEFC49095%2E1%7C.for.31888-33191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31888-33191.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31888-33191.gi%7C284095464%7Cgb%7CEFC49095%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086458%7Cgb%7CEFC40134%2E1%7C.for.31879-33191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31879-33191.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31879-33191.gi%7C284086458%7Cgb%7CEFC40134%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090503%7Cgb%7CEFC44154%2E1%7C.for.31897-33191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33191.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33191.gi%7C284090503%7Cgb%7CEFC44154%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087655%7Cgb%7CEFC41323%2E1%7C.for.35179-36215.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35179-36215.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35179-36215.gi%7C284087655%7Cgb%7CEFC41323%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094750%7Cgb%7CEFC48383%2E1%7C.for.35182-36185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35182-36185.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35182-36185.gi%7C284094750%7Cgb%7CEFC48383%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093665%7Cgb%7CEFC47302%2E1%7C.for.35185-36215.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35185-36215.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35185-36215.gi%7C284093665%7Cgb%7CEFC47302%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083002%7Cgb%7CEFC36710%2E1%7C.for.35167-36194.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35167-36194.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35167-36194.gi%7C284083002%7Cgb%7CEFC36710%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096189%7Cgb%7CEFC49818%2E1%7C.for.35200-36185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35200-36185.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35200-36185.gi%7C284096189%7Cgb%7CEFC49818%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097268%7Cgb%7CEFC50895%2E1%7C.for.35194-36119.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35194-36119.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35194-36119.gi%7C284097268%7Cgb%7CEFC50895%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087657%7Cgb%7CEFC41325%2E1%7C.for.35194-36185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35194-36185.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35194-36185.gi%7C284087657%7Cgb%7CEFC41325%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.53623-54797.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.53623-54797.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.53623-54797.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080808%7Cgb%7CEFC35194%2E1%7C.for.53641-54773.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.53641-54773.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.53641-54773.gi%7C284080808%7Cgb%7CEFC35194%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088718%7Cgb%7CEFC42380%2E1%7C.for.97321-99173.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.97321-99173.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.97321-99173.gi%7C284088718%7Cgb%7CEFC42380%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088128%7Cgb%7CEFC41793%2E1%7C.for.102638-105144.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.102638-105144.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.102638-105144.gi%7C284088128%7Cgb%7CEFC41793%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087793%7Cgb%7CEFC41460%2E1%7C.for.122538-123964.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.122538-123964.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.122538-123964.gi%7C284087793%7Cgb%7CEFC41460%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091622%7Cgb%7CEFC45268%2E1%7C.for.127758-128797.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.127758-128797.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.127758-128797.gi%7C284091622%7Cgb%7CEFC45268%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092450%7Cgb%7CEFC46092%2E1%7C.for.129955-132404.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.129955-132404.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.129955-132404.gi%7C284092450%7Cgb%7CEFC46092%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092967%7Cgb%7CEFC46607%2E1%7C.for.130477-132494.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.130477-132494.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.130477-132494.gi%7C284092967%7Cgb%7CEFC46607%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095326%7Cgb%7CEFC48957%2E1%7C.for.130348-132413.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.130348-132413.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.130348-132413.gi%7C284095326%7Cgb%7CEFC48957%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:10 now processing 0 total clusters:10 now processing 0 ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:10 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:10 now processing 0 total clusters:10 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:10 now processing 0 total clusters:10 now processing 0 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 12 ...processing 1 of 12 ...processing 2 of 12 ...processing 3 of 12 ...processing 4 of 12 ...processing 5 of 12 ...processing 6 of 12 ...processing 7 of 12 ...processing 8 of 12 ...processing 9 of 12 ...processing 10 of 12 ...processing 11 of 12 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:9 now processing 0 total clusters:9 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:20 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:20 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:20 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:20 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:20 now processing 0 total clusters:20 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.2527-3444.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.2527-3444.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.2527-3444.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.20587-21452.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.20587-21452.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.20587-21452.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.23565-25687.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.23565-25687.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.23565-25687.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.32078-32991.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.32078-32991.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.32078-32991.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.35393-36315.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.35393-36315.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.35393-36315.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.44759-45610.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.44759-45610.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.44759-45610.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.49353-50561.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.49353-50561.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.49353-50561.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.76510-79797.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.76510-79797.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.76510-79797.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.84168-85294.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.84168-85294.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.84168-85294.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.95633-96616.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.95633-96616.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.95633-96616.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.101574-103179.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.101574-103179.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.101574-103179.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.115045-116020.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.115045-116020.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.115045-116020.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.122667-123801.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.122667-123801.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.122667-123801.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.129957-132294.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.129957-132294.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.129957-132294.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.137252-141129.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.137252-141129.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.137252-141129.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.141596-142878.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.141596-142878.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.141596-142878.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.3655-5732.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.3655-5732.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.3655-5732.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.7392-8353.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.7392-8353.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.7392-8353.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.8468-9593.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.8468-9593.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.8468-9593.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.15900-16956.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.15900-16956.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.15900-16956.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.30678-31613.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.30678-31613.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.30678-31613.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.44776-46068.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.44776-46068.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.44776-46068.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.46936-47876.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.46936-47876.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.46936-47876.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.61201-62045.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.61201-62045.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.61201-62045.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.68048-70359.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.68048-70359.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.68048-70359.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.71228-72366.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.71228-72366.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.71228-72366.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.97520-98973.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.97520-98973.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.97520-98973.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.102837-104944.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.102837-104944.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.102837-104944.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.105082-106541.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.105082-106541.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.105082-106541.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.127632-128597.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.127632-128597.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.127632-128597.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.134207-135054.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.134207-135054.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.134207-135054.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.140715-141618.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.140715-141618.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.140715-141618.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C10 Length: 41445 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C10.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C10.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7990%7C%3Ap.for.1-1325.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.1-1325.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.1-1325.Ar_EST_120301b_c7990%7C%3Ap.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20004%7Crr3c854jq.for.1-895.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.1-895.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.1-895.Ar_EST_120301b_c20004%7Crr3c854jq.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15326%7Cccts.for.3101-4431.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.3101-4431.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.3101-4431.Ar_EST_120301b_c15326%7Cccts.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10775%7Csjs.for.4244-5630.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.4244-5630.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.4244-5630.Ar_EST_120301b_c10775%7Csjs.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18609%7Ctim-barrel.for.4880-6450.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.4880-6450.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.4880-6450.Ar_EST_120301b_c18609%7Ctim-barrel.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14489%7Cround.for.8011-9359.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.8011-9359.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.8011-9359.Ar_EST_120301b_c14489%7Cround.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5030%7Cthaumatin-like.for.13925-15433.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.13925-15433.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.13925-15433.Ar_EST_120301b_rep_c5030%7Cthaumatin-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11177%7C---NA---.for.14867-16020.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.14867-16020.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.14867-16020.Ar_EST_120301b_c11177%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3649%7Cthaumatin-like.for.14119-16160.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.14119-16160.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.14119-16160.Ar_EST_120301b_c3649%7Cthaumatin-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5431%7Cthaumatin-like.for.13925-15654.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.13925-15654.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.13925-15654.Ar_EST_120301b_rep_c5431%7Cthaumatin-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17044%7Cdiphthamide.for.16149-17668.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.16149-17668.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.16149-17668.Ar_EST_120301b_c17044%7Cdiphthamide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c438%7Cpredicted.for.18557-20020.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.18557-20020.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.18557-20020.Ar_EST_120301b_c438%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig292%7Cpredicted.for.20140-22013.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.20140-22013.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.20140-22013.120301b_Contig292%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15990%7Cpredicted.for.20407-21603.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.20407-21603.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.20407-21603.Ar_EST_120301b_c15990%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig108%7Cprotein.for.23629-25513.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.23629-25513.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.23629-25513.120301b_Contig108%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1336%7Cprotein.for.23583-25036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.23583-25036.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.23583-25036.Ar_EST_120301b_c1336%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12861%7Couter.for.26766-28223.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.26766-28223.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.26766-28223.Ar_EST_120301b_c12861%7Couter.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8318%7Corigin.for.33442-35248.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.33442-35248.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.33442-35248.Ar_EST_120301b_c8318%7Corigin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15788%7Cprotein.for.35397-36741.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.35397-36741.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.35397-36741.Ar_EST_120301b_c15788%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15057%7Chypothetical.for.37196-38399.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.37196-38399.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.37196-38399.Ar_EST_120301b_c15057%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13382%7Cankyrin.for.38547-39913.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.38547-39913.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.38547-39913.Ar_EST_120301b_c13382%7Cankyrin.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:4 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:5 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090147%7Cgb%7CEFC43800%2E1%7C.for.11234-13175.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.11234-13175.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.11234-13175.gi%7C284090147%7Cgb%7CEFC43800%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090178%7Cgb%7CEFC43831%2E1%7C.for.18566-20543.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.18566-20543.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.18566-20543.gi%7C284090178%7Cgb%7CEFC43831%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084450%7Cgb%7CEFC38143%2E1%7C.for.23716-25578.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.23716-25578.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.23716-25578.gi%7C284084450%7Cgb%7CEFC38143%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087263%7Cgb%7CEFC40934%2E1%7C.for.23716-25578.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.23716-25578.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.23716-25578.gi%7C284087263%7Cgb%7CEFC40934%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093311%7Cgb%7CEFC46949%2E1%7C.for.31780-34157.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.31780-34157.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.31780-34157.gi%7C284093311%7Cgb%7CEFC46949%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095584%7Cgb%7CEFC49214%2E1%7C.for.31780-34052.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.31780-34052.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.31780-34052.gi%7C284095584%7Cgb%7CEFC49214%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086204%7Cgb%7CEFC39882%2E1%7C.for.35715-36694.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.35715-36694.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.35715-36694.gi%7C284086204%7Cgb%7CEFC39882%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088638%7Cgb%7CEFC42300%2E1%7C.for.35605-36721.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.35605-36721.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.35605-36721.gi%7C284088638%7Cgb%7CEFC42300%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:2 now processing 0 total clusters:2 now processing 0 ...processing 0 of 2 ...processing 1 of 2 cleaning clusters.... total clusters:2 now processing 0 total clusters:2 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:5 now processing 0 total clusters:5 now processing 0 total clusters:5 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:5 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:5 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.0-1125.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.0-1125.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.0-1125.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.3300-4231.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.3300-4231.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.3300-4231.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.4443-5430.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.4443-5430.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.4443-5430.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.14124-15960.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.14124-15960.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.14124-15960.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.16348-17526.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.16348-17526.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.16348-17526.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.18756-21813.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.18756-21813.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.18756-21813.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.23782-25313.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.23782-25313.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.23782-25313.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.26965-28023.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.26965-28023.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.26965-28023.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.33641-35048.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.33641-35048.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.33641-35048.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.35596-36541.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.35596-36541.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.35596-36541.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.5079-6250.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.5079-6250.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.5079-6250.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.8210-9159.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.8210-9159.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.8210-9159.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.15066-15820.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.15066-15820.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.15066-15820.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.31979-33957.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.31979-33957.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.31979-33957.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C11 Length: 25661 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C11.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C11.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12658%7Csurface.for.11183-12467.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.11183-12467.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.11183-12467.Ar_EST_120301b_c12658%7Csurface.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17333%7C---NA---.for.12804-13730.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.12804-13730.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.12804-13730.Ar_EST_120301b_c17333%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1625%7Cpredicted.for.13250-14650.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.13250-14650.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.13250-14650.Ar_EST_120301b_c1625%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10919%7Chistone.for.13946-15700.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.13946-15700.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.13946-15700.Ar_EST_120301b_c10919%7Chistone.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9390%7Cniemann-pick.for.23587-25127.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.23587-25127.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.23587-25127.Ar_EST_120301b_c9390%7Cniemann-pick.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c579%7Cpatched.for.24367-25661.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.24367-25661.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.24367-25661.Ar_EST_120301b_c579%7Cpatched.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2814%7Cniemann-pick.for.23796-25595.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.23796-25595.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.23796-25595.Ar_EST_120301b_c2814%7Cniemann-pick.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:4 now processing 0 total clusters:4 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:4 now processing 0 total clusters:4 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:14 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:14 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:22 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:37 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:19 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:19 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:19 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:25 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:18 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:10 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.335-2502.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.335-2502.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.335-2502.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.for.539-2493.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.539-2493.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.539-2493.gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.for.512-2502.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.512-2502.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.512-2502.gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085983%7Cgb%7CEFC39663%2E1%7C.for.551-2454.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2454.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2454.gi%7C284085983%7Cgb%7CEFC39663%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.for.521-2502.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.521-2502.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.521-2502.gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085992%7Cgb%7CEFC39672%2E1%7C.for.161-2502.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.161-2502.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.161-2502.gi%7C284085992%7Cgb%7CEFC39672%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.for.557-2670.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.557-2670.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.557-2670.gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.for.671-2022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.671-2022.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.671-2022.gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088147%7Cgb%7CEFC41812%2E1%7C.for.554-2562.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.554-2562.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.554-2562.gi%7C284088147%7Cgb%7CEFC41812%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.for.548-2502.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2502.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2502.gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.for.548-2511.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2511.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2511.gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.for.524-2553.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.524-2553.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.524-2553.gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.for.539-2508.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.539-2508.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.539-2508.gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082687%7Cgb%7CEFC36400%2E1%7C.for.551-2505.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2505.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2505.gi%7C284082687%7Cgb%7CEFC36400%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.for.512-2505.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.512-2505.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.512-2505.gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085285%7Cgb%7CEFC38970%2E1%7C.for.551-2406.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2406.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2406.gi%7C284085285%7Cgb%7CEFC38970%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.for.548-2511.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2511.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2511.gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.for.551-2493.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2493.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2493.gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088717%7Cgb%7CEFC42379%2E1%7C.for.551-2475.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2475.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2475.gi%7C284088717%7Cgb%7CEFC42379%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097002%7Cgb%7CEFC50629%2E1%7C.for.548-2499.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2499.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2499.gi%7C284097002%7Cgb%7CEFC50629%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081579%7Cgb%7CEFC35529%2E1%7C.for.551-2472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2472.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2472.gi%7C284081579%7Cgb%7CEFC35529%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.for.545-2508.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.545-2508.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.545-2508.gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.for.548-2472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2472.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2472.gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.for.506-2481.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.506-2481.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.506-2481.gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.for.551-2484.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2484.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2484.gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.for.494-2511.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.494-2511.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.494-2511.gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.for.452-2454.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.452-2454.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.452-2454.gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.for.548-2493.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2493.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2493.gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.for.668-2457.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.668-2457.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.668-2457.gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.for.479-2472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.479-2472.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.479-2472.gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092203%7Cgb%7CEFC45846%2E1%7C.for.536-2511.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.536-2511.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.536-2511.gi%7C284092203%7Cgb%7CEFC45846%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.for.488-2541.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.488-2541.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.488-2541.gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095044%7Cgb%7CEFC48676%2E1%7C.for.542-2475.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.542-2475.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.542-2475.gi%7C284095044%7Cgb%7CEFC48676%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083967%7Cgb%7CEFC37665%2E1%7C.for.530-2553.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.530-2553.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.530-2553.gi%7C284083967%7Cgb%7CEFC37665%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087857%7Cgb%7CEFC41524%2E1%7C.for.548-2511.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2511.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2511.gi%7C284087857%7Cgb%7CEFC41524%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.for.584-2448.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.584-2448.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.584-2448.gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084868%7Cgb%7CEFC38556%2E1%7C.for.17759-19557.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.17759-19557.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.17759-19557.gi%7C284084868%7Cgb%7CEFC38556%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096986%7Cgb%7CEFC50613%2E1%7C.for.19699-21620.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.19699-21620.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.19699-21620.gi%7C284096986%7Cgb%7CEFC50613%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085045%7Cgb%7CEFC38732%2E1%7C.for.23527-25661.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.23527-25661.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.23527-25661.gi%7C284085045%7Cgb%7CEFC38732%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:3 now processing 0 total clusters:3 now processing 0 total clusters:3 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:3 now processing 0 total clusters:3 now processing 0 total clusters:3 now processing 0 ...processing 0 of 32 ...processing 1 of 32 ...processing 2 of 32 ...processing 3 of 32 ...processing 4 of 32 ...processing 5 of 32 ...processing 6 of 32 ...processing 7 of 32 ...processing 8 of 32 ...processing 9 of 32 ...processing 10 of 32 ...processing 11 of 32 ...processing 12 of 32 ...processing 13 of 32 ...processing 14 of 32 ...processing 15 of 32 ...processing 16 of 32 ...processing 17 of 32 ...processing 18 of 32 ...processing 19 of 32 ...processing 20 of 32 ...trimming the rest flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:3 now processing 0 total clusters:3 now processing 0 total clusters:3 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:3 now processing 0 ...processing 0 of 20 ...processing 1 of 20 ...processing 2 of 20 ...processing 3 of 20 ...processing 4 of 20 ...processing 5 of 20 ...processing 6 of 20 ...processing 7 of 20 ...processing 8 of 20 ...processing 9 of 20 ...processing 10 of 20 ...processing 11 of 20 ...processing 12 of 20 ...processing 13 of 20 ...processing 14 of 20 ...processing 15 of 20 ...processing 16 of 20 ...processing 17 of 20 ...processing 18 of 20 ...processing 19 of 20 ...trimming the rest ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:3 now processing 0 total clusters:3 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.11382-12267.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.11382-12267.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.11382-12267.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.19898-21420.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.19898-21420.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.19898-21420.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.23726-25661.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.23726-25661.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.23726-25661.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.651-2335.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.651-2335.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.651-2335.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.13449-15575.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.13449-15575.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.13449-15575.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C12 Length: 151965 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:4 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:1 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:5 current j:0 j_size:5 current j:1 j_size:5 current j:2 j_size:5 current j:3 j_size:5 current j:4 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C12.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C12.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:10 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:4 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c728%7C600592206f1.for.1-1027.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.1-1027.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.1-1027.Ar_EST_120301b_c728%7C600592206f1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20258%7Cfq662406.for.1273-3642.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.1273-3642.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.1273-3642.Ar_EST_120301b_c20258%7Cfq662406.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11238%7Cwith.for.3899-5314.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.3899-5314.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.3899-5314.Ar_EST_120301b_c11238%7Cwith.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig287%7Cwith.for.4446-6729.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.4446-6729.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.4446-6729.120301b_Contig287%7Cwith.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4923%7Cconserved.for.5017-6047.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.5017-6047.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.5017-6047.Ar_EST_120301b_rep_c4923%7Cconserved.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c378%7Ccbnf.for.6989-8771.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.6989-8771.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.6989-8771.Ar_EST_120301b_c378%7Ccbnf.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3189%7Cdiaphanous-related.for.7781-9843.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.7781-9843.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.7781-9843.Ar_EST_120301b_c3189%7Cdiaphanous-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1550%7Cdiaphanous-related.for.9665-11058.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.9665-11058.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.9665-11058.Ar_EST_120301b_c1550%7Cdiaphanous-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11195%7Cmagnesium.for.24231-25451.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.24231-25451.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.24231-25451.Ar_EST_120301b_c11195%7Cmagnesium.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18198%7Creplication.for.26279-27668.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.26279-27668.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.26279-27668.Ar_EST_120301b_c18198%7Creplication.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18234%7Cham.for.26021-27411.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.26021-27411.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.26021-27411.Ar_EST_120301b_c18234%7Cham.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13712%7Creplication.for.27060-28313.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.27060-28313.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.27060-28313.Ar_EST_120301b_c13712%7Creplication.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9222%7Creplication.for.28102-29380.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.28102-29380.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.28102-29380.Ar_EST_120301b_c9222%7Creplication.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c527%7CPREDICTED%3A.for.28874-30302.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.28874-30302.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.28874-30302.Ar_EST_120301b_c527%7CPREDICTED%3A.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1382%7Cprotein.for.30821-32102.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.30821-32102.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.30821-32102.Ar_EST_120301b_c1382%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c651%7C40s.for.32109-34724.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.32109-34724.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.32109-34724.Ar_EST_120301b_c651%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15484%7C---NA---.for.32165-33345.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.32165-33345.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.32165-33345.Ar_EST_120301b_c15484%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4119%7Cmhck.for.36707-38256.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.36707-38256.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.36707-38256.Ar_EST_120301b_rep_c4119%7Cmhck.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10138%7Cmhck.for.37169-38246.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.37169-38246.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.37169-38246.Ar_EST_120301b_rep_c10138%7Cmhck.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15620%7Cmhck.for.37202-38226.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.37202-38226.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.37202-38226.Ar_EST_120301b_rep_c15620%7Cmhck.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5645%7Cmhck.for.36710-38207.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.36710-38207.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.36710-38207.Ar_EST_120301b_rep_c5645%7Cmhck.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1100%7Chypothetical.for.38822-40252.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.38822-40252.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.38822-40252.Ar_EST_120301b_c1100%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1316%7Cpeptide.for.40496-42494.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.40496-42494.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.40496-42494.Ar_EST_120301b_c1316%7Cpeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8577%7Cpeptide.for.41083-42501.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.41083-42501.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.41083-42501.Ar_EST_120301b_c8577%7Cpeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11844%7Csymbiotic.for.45845-47323.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.45845-47323.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.45845-47323.Ar_EST_120301b_c11844%7Csymbiotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18328%7Chypothetical.for.47200-48548.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.47200-48548.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.47200-48548.Ar_EST_120301b_c18328%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15267%7C---NA---.for.48658-49505.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.48658-49505.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.48658-49505.Ar_EST_120301b_c15267%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9869%7Ccell.for.51245-52959.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.51245-52959.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.51245-52959.Ar_EST_120301b_c9869%7Ccell.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17405%7Ccell.for.52390-53708.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.52390-53708.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.52390-53708.Ar_EST_120301b_c17405%7Ccell.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2712%7Cprotein.for.53486-55207.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.53486-55207.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.53486-55207.Ar_EST_120301b_c2712%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2244%7Cphosphomannomutase.for.54527-56081.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.54527-56081.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.54527-56081.Ar_EST_120301b_c2244%7Cphosphomannomutase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12102%7C---NA---.for.55329-56645.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.55329-56645.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.55329-56645.Ar_EST_120301b_c12102%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig305%7C78.for.59657-62478.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59657-62478.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59657-62478.120301b_Contig305%7C78.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20111%7Cgtp-binding.for.60232-61394.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.60232-61394.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.60232-61394.Ar_EST_120301b_rep_c20111%7Cgtp-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12799%7Cheat.for.59885-61210.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59885-61210.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59885-61210.Ar_EST_120301b_rep_c12799%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5590%7Cglucose.for.59659-61634.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59659-61634.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59659-61634.Ar_EST_120301b_rep_c5590%7Cglucose.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5697%7Cluminal.for.60638-62264.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.60638-62264.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.60638-62264.Ar_EST_120301b_rep_c5697%7Cluminal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c730%7Cpeptidyl-prolyl.for.62422-63765.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62422-63765.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62422-63765.Ar_EST_120301b_c730%7Cpeptidyl-prolyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16254%7Cbx752014.for.68805-70068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.68805-70068.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.68805-70068.Ar_EST_120301b_c16254%7Cbx752014.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2267%7C3-hydroxyacyl-.for.74154-75649.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.74154-75649.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.74154-75649.Ar_EST_120301b_c2267%7C3-hydroxyacyl-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10600%7Cshort-chain.for.74398-75478.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.74398-75478.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.74398-75478.Ar_EST_120301b_c10600%7Cshort-chain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11679%7C---NA---.for.76004-77182.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.76004-77182.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.76004-77182.Ar_EST_120301b_c11679%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4144%7Czinc.for.77468-79097.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.77468-79097.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.77468-79097.Ar_EST_120301b_rep_c4144%7Czinc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5140%7Cnotch.for.77764-79199.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.77764-79199.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.77764-79199.Ar_EST_120301b_rep_c5140%7Cnotch.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11995%7Csensitivity.for.78617-80004.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.78617-80004.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.78617-80004.Ar_EST_120301b_c11995%7Csensitivity.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18400%7Cprotein.for.83478-84841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.83478-84841.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.83478-84841.Ar_EST_120301b_c18400%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14469%7Cprotein.for.84247-85627.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.84247-85627.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.84247-85627.Ar_EST_120301b_c14469%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3303%7Cmolybdenum.for.91771-93085.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.91771-93085.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.91771-93085.Ar_EST_120301b_c3303%7Cmolybdenum.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig225%7Cmolybdenum.for.90117-92666.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.90117-92666.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.90117-92666.120301b_Contig225%7Cmolybdenum.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10477%7Cpa-phosphatase.for.93514-95251.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.93514-95251.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.93514-95251.Ar_EST_120301b_c10477%7Cpa-phosphatase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9955%7Cmeloidogyne.for.93697-94715.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.93697-94715.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.93697-94715.Ar_EST_120301b_c9955%7Cmeloidogyne.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11581%7Cprotein.for.94100-95577.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.94100-95577.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.94100-95577.Ar_EST_120301b_c11581%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19576%7Cfusca.for.94823-96350.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.94823-96350.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.94823-96350.Ar_EST_120301b_rep_c19576%7Cfusca.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig170%7Cprotein.for.94827-96951.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.94827-96951.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.94827-96951.120301b_Contig170%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7131%7Cferrichrome.for.96302-97853.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96302-97853.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96302-97853.Ar_EST_120301b_rep_c7131%7Cferrichrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13182%7C---NA---.for.96455-97783.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96455-97783.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96455-97783.Ar_EST_120301b_rep_c13182%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c6331%7Ccu619418.for.96329-97526.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96329-97526.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96329-97526.Ar_EST_120301b_c6331%7Ccu619418.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig502%7Cferrichrome.for.96303-97897.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96303-97897.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96303-97897.120301b_Contig502%7Cferrichrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9400%7Cmus06-.for.96344-97727.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96344-97727.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96344-97727.Ar_EST_120301b_rep_c9400%7Cmus06-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12703%7Cdisulfide.for.96546-97781.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96546-97781.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96546-97781.Ar_EST_120301b_rep_c12703%7Cdisulfide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5321%7C-.for.96317-97706.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96317-97706.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96317-97706.Ar_EST_120301b_rep_c5321%7C-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11637%7Ccczb.for.96273-97722.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96273-97722.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96273-97722.Ar_EST_120301b_rep_c11637%7Ccczb.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15753%7Coligopeptide.for.96409-97810.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96409-97810.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96409-97810.Ar_EST_120301b_rep_c15753%7Coligopeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5757%7Cdisulfide.for.96700-97781.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96700-97781.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96700-97781.Ar_EST_120301b_rep_c5757%7Cdisulfide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13003%7Ce3.for.96709-97781.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96709-97781.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96709-97781.Ar_EST_120301b_rep_c13003%7Ce3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6679%7C9787.for.96302-97783.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96302-97783.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96302-97783.Ar_EST_120301b_rep_c6679%7C9787.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12673%7Cubiquitin-protein.for.96641-97769.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96641-97769.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96641-97769.Ar_EST_120301b_rep_c12673%7Cubiquitin-protein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4609%7Cprotein.for.96302-97810.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96302-97810.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96302-97810.Ar_EST_120301b_rep_c4609%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15179%7C---NA---.for.96524-97715.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96524-97715.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96524-97715.Ar_EST_120301b_rep_c15179%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14025%7C---NA---.for.98770-99965.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.98770-99965.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.98770-99965.Ar_EST_120301b_c14025%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig23%7Cprotein.for.100923-102492.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.100923-102492.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.100923-102492.120301b_Contig23%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15597%7Cgpgc_est01533.for.102951-104268.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.102951-104268.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.102951-104268.Ar_EST_120301b_c15597%7Cgpgc_est01533.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14029%7Ccbwo.for.103484-104861.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.103484-104861.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.103484-104861.Ar_EST_120301b_c14029%7Ccbwo.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1391%7Cmonothiol.for.105135-106412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105135-106412.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105135-106412.Ar_EST_120301b_c1391%7Cmonothiol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11256%7Cbipolar.for.107074-109113.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.107074-109113.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.107074-109113.Ar_EST_120301b_c11256%7Cbipolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10687%7C---NA---.for.108374-109747.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.108374-109747.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.108374-109747.Ar_EST_120301b_c10687%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11166%7Cphosphatidylethanolamine.for.110002-111393.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.110002-111393.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.110002-111393.Ar_EST_120301b_c11166%7Cphosphatidylethanolamine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15500%7Cphosphatidylethanolaminen-methyltransferase-lik.for.110586-111697.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.110586-111697.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.110586-111697.Ar_EST_120301b_c15500%7Cphosphatidylethanolaminen-methyltransferase-lik.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig910%7Cphosphatidylethanolaminen-methyltransferase-lik.for.111061-112546.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.111061-112546.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.111061-112546.120301b_Contig910%7Cphosphatidylethanolaminen-methyltransferase-lik.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig127%7Csh3.for.113661-115293.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.113661-115293.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.113661-115293.120301b_Contig127%7Csh3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig422%7Csh3.for.114866-116880.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.114866-116880.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.114866-116880.120301b_Contig422%7Csh3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7745%7Cdedicator.for.116151-118278.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.116151-118278.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.116151-118278.Ar_EST_120301b_c7745%7Cdedicator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8510%7Ctranscription.for.118339-119509.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.118339-119509.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.118339-119509.Ar_EST_120301b_rep_c8510%7Ctranscription.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1228%7Cdedicator.for.117330-119916.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.117330-119916.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.117330-119916.120301b_Contig1228%7Cdedicator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18015%7Cinosine-uridine.for.119625-120965.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.119625-120965.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.119625-120965.Ar_EST_120301b_c18015%7Cinosine-uridine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2577%7Cprotein.for.124415-126298.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.124415-126298.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.124415-126298.Ar_EST_120301b_c2577%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9484%7C1533272.for.125735-126997.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.125735-126997.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.125735-126997.Ar_EST_120301b_c9484%7C1533272.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8218%7Cprotein.for.126743-128790.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.126743-128790.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.126743-128790.Ar_EST_120301b_c8218%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13412%7C---NA---.for.128342-129516.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.128342-129516.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.128342-129516.Ar_EST_120301b_c13412%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19599%7Chec.for.129431-130776.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.129431-130776.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.129431-130776.Ar_EST_120301b_c19599%7Chec.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8962%7Cchromosome.for.129082-130441.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.129082-130441.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.129082-130441.Ar_EST_120301b_c8962%7Cchromosome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2192%7Cphosphatidic.for.135132-136930.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.135132-136930.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.135132-136930.Ar_EST_120301b_c2192%7Cphosphatidic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15138%7Clib4217-068-r1-k1-b1.for.136433-137418.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.136433-137418.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.136433-137418.Ar_EST_120301b_c15138%7Clib4217-068-r1-k1-b1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15263%7C---NA---.for.136631-137561.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.136631-137561.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.136631-137561.Ar_EST_120301b_rep_c15263%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2905%7C---NA---.for.137181-139024.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.137181-139024.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.137181-139024.Ar_EST_120301b_c2905%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig48%7C---NA---.for.138537-140647.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.138537-140647.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.138537-140647.120301b_Contig48%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16578%7Csigmae.for.149378-151076.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.149378-151076.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.149378-151076.Ar_EST_120301b_c16578%7Csigmae.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17410%7Ctetratricopeptide.for.150544-151872.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.150544-151872.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.150544-151872.Ar_EST_120301b_c17410%7Ctetratricopeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18065%7Ctetratricopeptide.for.150570-151821.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.150570-151821.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.150570-151821.Ar_EST_120301b_c18065%7Ctetratricopeptide.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:46 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:43 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:50 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:46 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:26 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:40 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:48 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:36 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093495%7Cgb%7CEFC47133%2E1%7C.for.3581-5384.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.3581-5384.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.3581-5384.gi%7C284093495%7Cgb%7CEFC47133%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090291%7Cgb%7CEFC43943%2E1%7C.for.4015-5161.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.4015-5161.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.4015-5161.gi%7C284090291%7Cgb%7CEFC43943%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084873%7Cgb%7CEFC38561%2E1%7C.for.4027-5218.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.4027-5218.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.4027-5218.gi%7C284084873%7Cgb%7CEFC38561%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097132%7Cgb%7CEFC50759%2E1%7C.for.4027-5155.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.4027-5155.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.4027-5155.gi%7C284097132%7Cgb%7CEFC50759%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091842%7Cgb%7CEFC45487%2E1%7C.for.24248-26025.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.24248-26025.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.24248-26025.gi%7C284091842%7Cgb%7CEFC45487%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092123%7Cgb%7CEFC45766%2E1%7C.for.26817-29382.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.26817-29382.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.26817-29382.gi%7C284092123%7Cgb%7CEFC45766%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083554%7Cgb%7CEFC37256%2E1%7C.for.29087-30486.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.29087-30486.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.29087-30486.gi%7C284083554%7Cgb%7CEFC37256%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084643%7Cgb%7CEFC38333%2E1%7C.for.49616-50949.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.49616-50949.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.49616-50949.gi%7C284084643%7Cgb%7CEFC38333%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C1705642%7Csp%7CP53441%2E1%7CCATR_NAEGR.for.49616-50949.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.49616-50949.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.49616-50949.gi%7C1705642%7Csp%7CP53441%2E1%7CCATR_NAEGR.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C972963%7Cgb%7CAAA75032%2E1%7C.for.49616-50949.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.49616-50949.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.49616-50949.gi%7C972963%7Cgb%7CAAA75032%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091881%7Cgb%7CEFC45525%2E1%7C.for.49598-50883.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.49598-50883.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.49598-50883.gi%7C284091881%7Cgb%7CEFC45525%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086029%7Cgb%7CEFC39708%2E1%7C.for.53762-55182.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.53762-55182.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.53762-55182.gi%7C284086029%7Cgb%7CEFC39708%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094206%7Cgb%7CEFC47841%2E1%7C.for.54553-56087.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.54553-56087.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.54553-56087.gi%7C284094206%7Cgb%7CEFC47841%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092821%7Cgb%7CEFC46461%2E1%7C.for.55858-60224.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.55858-60224.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.55858-60224.gi%7C284092821%7Cgb%7CEFC46461%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083022%7Cgb%7CEFC36730%2E1%7C.for.56017-60167.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.56017-60167.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.56017-60167.gi%7C284083022%7Cgb%7CEFC36730%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093552%7Cgb%7CEFC47189%2E1%7C.for.55819-60119.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.55819-60119.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.55819-60119.gi%7C284093552%7Cgb%7CEFC47189%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085695%7Cgb%7CEFC39377%2E1%7C.for.55768-60191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.55768-60191.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.55768-60191.gi%7C284085695%7Cgb%7CEFC39377%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082133%7Cgb%7CEFC35904%2E1%7C.for.56092-57512.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.56092-57512.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.56092-57512.gi%7C284082133%7Cgb%7CEFC35904%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091446%7Cgb%7CEFC45093%2E1%7C.for.59738-62358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59738-62358.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59738-62358.gi%7C284091446%7Cgb%7CEFC45093%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094819%7Cgb%7CEFC48452%2E1%7C.for.59918-62361.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59918-62361.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59918-62361.gi%7C284094819%7Cgb%7CEFC48452%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084267%7Cgb%7CEFC37961%2E1%7C.for.59996-62367.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59996-62367.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59996-62367.gi%7C284084267%7Cgb%7CEFC37961%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092327%7Cgb%7CEFC45969%2E1%7C.for.59813-62445.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59813-62445.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59813-62445.gi%7C284092327%7Cgb%7CEFC45969%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084526%7Cgb%7CEFC38218%2E1%7C.for.59685-62454.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59685-62454.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59685-62454.gi%7C284084526%7Cgb%7CEFC38218%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082776%7Cgb%7CEFC36488%2E1%7C.for.59762-62358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59762-62358.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59762-62358.gi%7C284082776%7Cgb%7CEFC36488%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085272%7Cgb%7CEFC38957%2E1%7C.for.59762-62358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59762-62358.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59762-62358.gi%7C284085272%7Cgb%7CEFC38957%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085885%7Cgb%7CEFC39565%2E1%7C.for.59762-62358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59762-62358.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59762-62358.gi%7C284085885%7Cgb%7CEFC39565%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085240%7Cgb%7CEFC38925%2E1%7C.for.59762-62358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59762-62358.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59762-62358.gi%7C284085240%7Cgb%7CEFC38925%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C33694258%7Cgb%7CAAQ24867%2E1%7C.for.59726-62358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59726-62358.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59726-62358.gi%7C33694258%7Cgb%7CAAQ24867%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089387%7Cgb%7CEFC43045%2E1%7C.for.59726-62358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59726-62358.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59726-62358.gi%7C284089387%7Cgb%7CEFC43045%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081155%7Cgb%7CEFC35313%2E1%7C.for.62542-63800.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62542-63800.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62542-63800.gi%7C284081155%7Cgb%7CEFC35313%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092983%7Cgb%7CEFC46623%2E1%7C.for.62542-63800.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62542-63800.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62542-63800.gi%7C284092983%7Cgb%7CEFC46623%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085514%7Cgb%7CEFC39197%2E1%7C.for.62548-63833.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62548-63833.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62548-63833.gi%7C284085514%7Cgb%7CEFC39197%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088464%7Cgb%7CEFC42127%2E1%7C.for.62728-63800.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62728-63800.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62728-63800.gi%7C284088464%7Cgb%7CEFC42127%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094883%7Cgb%7CEFC48516%2E1%7C.for.62734-63803.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62734-63803.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62734-63803.gi%7C284094883%7Cgb%7CEFC48516%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086458%7Cgb%7CEFC40134%2E1%7C.for.62734-63800.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62734-63800.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62734-63800.gi%7C284086458%7Cgb%7CEFC40134%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089438%7Cgb%7CEFC43095%2E1%7C.for.74105-75710.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.74105-75710.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.74105-75710.gi%7C284089438%7Cgb%7CEFC43095%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089747%7Cgb%7CEFC43403%2E1%7C.for.82024-83787.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82024-83787.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82024-83787.gi%7C284089747%7Cgb%7CEFC43403%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088991%7Cgb%7CEFC42651%2E1%7C.for.82054-84055.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82054-84055.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82054-84055.gi%7C284088991%7Cgb%7CEFC42651%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092256%7Cgb%7CEFC45899%2E1%7C.for.82090-83787.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82090-83787.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82090-83787.gi%7C284092256%7Cgb%7CEFC45899%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081561%7Cgb%7CEFC35518%2E1%7C.for.82084-83787.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82084-83787.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82084-83787.gi%7C284081561%7Cgb%7CEFC35518%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082242%7Cgb%7CEFC35988%2E1%7C.for.82117-83787.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82117-83787.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82117-83787.gi%7C284082242%7Cgb%7CEFC35988%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094373%7Cgb%7CEFC48007%2E1%7C.for.82021-83802.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82021-83802.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82021-83802.gi%7C284094373%7Cgb%7CEFC48007%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087115%7Cgb%7CEFC40787%2E1%7C.for.82018-83766.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82018-83766.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82018-83766.gi%7C284087115%7Cgb%7CEFC40787%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087025%7Cgb%7CEFC40697%2E1%7C.for.82018-83781.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82018-83781.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82018-83781.gi%7C284087025%7Cgb%7CEFC40697%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093068%7Cgb%7CEFC46707%2E1%7C.for.82087-84040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82087-84040.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82087-84040.gi%7C284093068%7Cgb%7CEFC46707%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091439%7Cgb%7CEFC45086%2E1%7C.for.82030-83805.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82030-83805.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82030-83805.gi%7C284091439%7Cgb%7CEFC45086%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088654%7Cgb%7CEFC42316%2E1%7C.for.82084-83787.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82084-83787.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82084-83787.gi%7C284088654%7Cgb%7CEFC42316%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090654%7Cgb%7CEFC44305%2E1%7C.for.80395-84052.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.80395-84052.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.80395-84052.gi%7C284090654%7Cgb%7CEFC44305%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096156%7Cgb%7CEFC49785%2E1%7C.for.82108-83763.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82108-83763.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82108-83763.gi%7C284096156%7Cgb%7CEFC49785%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093767%7Cgb%7CEFC47404%2E1%7C.for.82003-83778.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82003-83778.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82003-83778.gi%7C284093767%7Cgb%7CEFC47404%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086663%7Cgb%7CEFC40338%2E1%7C.for.85626-86563.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.85626-86563.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.85626-86563.gi%7C284086663%7Cgb%7CEFC40338%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084726%7Cgb%7CEFC38415%2E1%7C.for.90734-91704.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.90734-91704.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.90734-91704.gi%7C284084726%7Cgb%7CEFC38415%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088468%7Cgb%7CEFC42131%2E1%7C.for.92844-94195.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.92844-94195.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.92844-94195.gi%7C284088468%7Cgb%7CEFC42131%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086633%7Cgb%7CEFC40308%2E1%7C.for.94814-96942.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.94814-96942.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.94814-96942.gi%7C284086633%7Cgb%7CEFC40308%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096908%7Cgb%7CEFC50535%2E1%7C.for.105234-106381.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105234-106381.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105234-106381.gi%7C284096908%7Cgb%7CEFC50535%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089747%7Cgb%7CEFC43403%2E1%7C.for.105883-107777.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105883-107777.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105883-107777.gi%7C284089747%7Cgb%7CEFC43403%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082242%7Cgb%7CEFC35988%2E1%7C.for.106003-107663.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.106003-107663.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.106003-107663.gi%7C284082242%7Cgb%7CEFC35988%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094373%7Cgb%7CEFC48007%2E1%7C.for.105853-107771.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105853-107771.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105853-107771.gi%7C284094373%7Cgb%7CEFC48007%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093549%7Cgb%7CEFC47186%2E1%7C.for.105874-108389.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105874-108389.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105874-108389.gi%7C284093549%7Cgb%7CEFC47186%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091439%7Cgb%7CEFC45086%2E1%7C.for.105874-107756.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105874-107756.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105874-107756.gi%7C284091439%7Cgb%7CEFC45086%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085654%7Cgb%7CEFC39336%2E1%7C.for.105868-107768.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105868-107768.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105868-107768.gi%7C284085654%7Cgb%7CEFC39336%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088654%7Cgb%7CEFC42316%2E1%7C.for.105982-107687.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105982-107687.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105982-107687.gi%7C284088654%7Cgb%7CEFC42316%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084300%7Cgb%7CEFC37994%2E1%7C.for.109953-112547.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.109953-112547.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.109953-112547.gi%7C284084300%7Cgb%7CEFC37994%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093284%7Cgb%7CEFC46922%2E1%7C.for.113649-119929.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.113649-119929.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.113649-119929.gi%7C284093284%7Cgb%7CEFC46922%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092928%7Cgb%7CEFC46568%2E1%7C.for.147396-149152.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.147396-149152.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.147396-149152.gi%7C284092928%7Cgb%7CEFC46568%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:18 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:18 now processing 0 ...processing 0 of 11 ...processing 1 of 11 ...processing 2 of 11 ...processing 3 of 11 ...processing 4 of 11 ...processing 5 of 11 ...processing 6 of 11 ...processing 7 of 11 ...processing 8 of 11 ...processing 9 of 11 ...processing 10 of 11 total clusters:18 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:18 now processing 0 total clusters:18 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:16 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:16 now processing 0 ...processing 0 of 11 ...processing 1 of 11 ...processing 2 of 11 ...processing 3 of 11 ...processing 4 of 11 ...processing 5 of 11 ...processing 6 of 11 ...processing 7 of 11 ...processing 8 of 11 ...processing 9 of 11 ...processing 10 of 11 total clusters:16 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:16 now processing 0 total clusters:16 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:16 now processing 0 total clusters:16 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:25 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:25 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.1472-3444.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.1472-3444.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.1472-3444.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.3780-6529.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.3780-6529.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.3780-6529.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.7980-10858.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.7980-10858.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.7980-10858.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.24430-25871.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.24430-25871.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.24430-25871.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.26082-29425.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.26082-29425.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.26082-29425.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.40695-42306.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.40695-42306.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.40695-42306.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.46044-47123.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.46044-47123.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.46044-47123.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.53685-55887.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.53685-55887.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.53685-55887.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.76160-76982.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.76160-76982.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.76160-76982.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.77639-79020.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.77639-79020.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.77639-79020.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.83677-85427.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.83677-85427.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.83677-85427.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.90316-92885.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.90316-92885.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.90316-92885.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.93043-95377.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.93043-95377.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.93043-95377.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.103150-104661.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.103150-104661.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.103150-104661.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.105334-109562.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.105334-109562.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.105334-109562.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.113848-119729.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.113848-119729.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.113848-119729.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.119765-120770.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.119765-120770.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.119765-120770.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.124614-126828.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.124614-126828.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.124614-126828.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.126942-129316.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.126942-129316.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.126942-129316.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.135331-136730.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.135331-136730.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.135331-136730.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.147595-150876.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.147595-150876.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.147595-150876.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.0-827.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.0-827.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.0-827.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.29073-30289.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.29073-30289.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.29073-30289.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.31020-31920.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.31020-31920.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.31020-31920.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.32362-33211.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.32362-33211.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.32362-33211.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.36906-38056.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.36906-38056.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.36906-38056.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.47399-48348.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.47399-48348.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.47399-48348.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.49797-50749.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.49797-50749.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.49797-50749.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.51444-53529.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.51444-53529.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.51444-53529.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.55528-62278.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.55528-62278.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.55528-62278.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.62621-63668.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.62621-63668.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.62621-63668.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.69004-69868.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.69004-69868.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.69004-69868.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.74304-75510.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.74304-75510.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.74304-75510.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.78816-79874.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.78816-79874.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.78816-79874.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.80594-83855.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.80594-83855.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.80594-83855.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.95013-97791.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.95013-97791.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.95013-97791.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.101122-102292.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.101122-102292.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.101122-102292.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.110152-112347.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.110152-112347.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.110152-112347.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.129281-130576.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.129281-130576.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.129281-130576.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.136620-137227.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.136620-137227.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.136620-137227.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/40_0.137380-140447.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/40_0.137380-140447.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/40_0.137380-140447.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/41_0.150743-151676.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/41_0.150743-151676.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/41_0.150743-151676.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C13 Length: 94253 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:3 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:1 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C13.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C13.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3661%7Cddb1-.for.1745-3537.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.1745-3537.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.1745-3537.Ar_EST_120301b_c3661%7Cddb1-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig808%7Carv1-like.for.2831-4363.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.2831-4363.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.2831-4363.120301b_Contig808%7Carv1-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18040%7Chydra.for.8499-9557.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.8499-9557.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.8499-9557.Ar_EST_120301b_c18040%7Chydra.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9342%7Cheat.for.12830-13893.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.12830-13893.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.12830-13893.Ar_EST_120301b_c9342%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12165%7Capoptosis.for.13946-15307.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.13946-15307.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.13946-15307.Ar_EST_120301b_c12165%7Capoptosis.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1412%7Cprotein.for.15657-17513.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.15657-17513.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.15657-17513.Ar_EST_120301b_c1412%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17790%7Ceimeria.for.16740-18028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.16740-18028.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.16740-18028.Ar_EST_120301b_c17790%7Ceimeria.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15312%7Cpredicted.for.17459-19020.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.17459-19020.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.17459-19020.Ar_EST_120301b_c15312%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1936%7Cbeta-catenin-like.for.20721-22008.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.20721-22008.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.20721-22008.Ar_EST_120301b_c1936%7Cbeta-catenin-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16537%7C---NA---.for.21351-22641.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.21351-22641.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.21351-22641.Ar_EST_120301b_c16537%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15992%7C---NA---.for.22668-23828.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.22668-23828.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.22668-23828.Ar_EST_120301b_c15992%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14531%7Chfmidgut6l20.for.23049-24066.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.23049-24066.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.23049-24066.Ar_EST_120301b_c14531%7Chfmidgut6l20.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20424%7Cserine.for.24027-26914.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24027-26914.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24027-26914.Ar_EST_120301b_c20424%7Cserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15621%7C---NA---.for.26261-27545.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.26261-27545.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.26261-27545.Ar_EST_120301b_c15621%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1943%7Cunnamed.for.26952-28306.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.26952-28306.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.26952-28306.Ar_EST_120301b_c1943%7Cunnamed.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3269%7Cvacuolar.for.30273-32149.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.30273-32149.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.30273-32149.Ar_EST_120301b_c3269%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig152%7Cpredicted.for.31784-33714.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.31784-33714.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.31784-33714.120301b_Contig152%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2300%7Cpolysaccharide.for.32622-34650.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.32622-34650.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.32622-34650.Ar_EST_120301b_c2300%7Cpolysaccharide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig777%7Cpredicted.for.34309-36092.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.34309-36092.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.34309-36092.120301b_Contig777%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig734%7Cnucleolar.for.37670-39974.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.37670-39974.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.37670-39974.120301b_Contig734%7Cnucleolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14475%7Cnucleolar.for.38061-39162.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.38061-39162.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.38061-39162.Ar_EST_120301b_c14475%7Cnucleolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10418%7Cdna.for.40207-41624.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.40207-41624.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.40207-41624.Ar_EST_120301b_c10418%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3221%7Cdna.for.41131-43095.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.41131-43095.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.41131-43095.Ar_EST_120301b_c3221%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6645%7Csmall.for.42492-44013.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.42492-44013.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.42492-44013.Ar_EST_120301b_rep_c6645%7Csmall.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6374%7Csmall.for.42392-44097.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.42392-44097.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.42392-44097.Ar_EST_120301b_rep_c6374%7Csmall.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5931%7Cg.for.44474-45483.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.44474-45483.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.44474-45483.Ar_EST_120301b_rep_c5931%7Cg.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4250%7Cg.for.43755-45604.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43755-45604.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43755-45604.Ar_EST_120301b_rep_c4250%7Cg.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1287%7Cbeta.for.45114-47502.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.45114-47502.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.45114-47502.120301b_Contig1287%7Cbeta.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14505%7C---NA---.for.46909-47898.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.46909-47898.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.46909-47898.Ar_EST_120301b_c14505%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8556%7Cglucose.for.49309-50844.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.49309-50844.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.49309-50844.Ar_EST_120301b_c8556%7Cglucose.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18986%7Ctrna.for.49922-51161.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.49922-51161.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.49922-51161.Ar_EST_120301b_c18986%7Ctrna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15011%7Cc-myc-binding.for.50825-51971.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.50825-51971.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.50825-51971.Ar_EST_120301b_c15011%7Cc-myc-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16329%7Cp-type.for.54519-56067.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.54519-56067.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.54519-56067.Ar_EST_120301b_c16329%7Cp-type.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig987%7Cdomain.for.55418-56940.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.55418-56940.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.55418-56940.120301b_Contig987%7Cdomain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c399%7Cp-type.for.57171-58500.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.57171-58500.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.57171-58500.Ar_EST_120301b_c399%7Cp-type.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8892%7Ctransmembrane.for.57005-58272.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.57005-58272.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.57005-58272.Ar_EST_120301b_c8892%7Ctransmembrane.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14963%7Cras.for.57852-59231.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.57852-59231.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.57852-59231.Ar_EST_120301b_c14963%7Cras.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11353%7Cphosphatidylserine.for.62457-63750.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.62457-63750.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.62457-63750.Ar_EST_120301b_c11353%7Cphosphatidylserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9953%7Cphosphatidylserine.for.62954-64357.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.62954-64357.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.62954-64357.Ar_EST_120301b_c9953%7Cphosphatidylserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15385%7Cconserved.for.64079-65170.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.64079-65170.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.64079-65170.Ar_EST_120301b_c15385%7Cconserved.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8704%7Cpeptidyl-trna.for.65595-67100.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.65595-67100.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.65595-67100.Ar_EST_120301b_c8704%7Cpeptidyl-trna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19991%7Ccalcium-dependent.for.66461-67517.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.66461-67517.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.66461-67517.Ar_EST_120301b_rep_c19991%7Ccalcium-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2912%7Ctransmembrane.for.66454-67702.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.66454-67702.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.66454-67702.Ar_EST_120301b_c2912%7Ctransmembrane.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14174%7Cfq834760.for.67005-68053.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.67005-68053.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.67005-68053.Ar_EST_120301b_rep_c14174%7Cfq834760.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19420%7Cactin.for.72710-73909.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.72710-73909.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.72710-73909.Ar_EST_120301b_c19420%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12691%7Calpha.for.73546-74865.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.73546-74865.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.73546-74865.Ar_EST_120301b_c12691%7Calpha.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12365%7Cfp681517.for.74084-75586.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.74084-75586.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.74084-75586.Ar_EST_120301b_c12365%7Cfp681517.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2440%7Cphosphatase.for.78688-80647.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.78688-80647.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.78688-80647.Ar_EST_120301b_c2440%7Cphosphatase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9114%7Cvesicle.for.79865-81214.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.79865-81214.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.79865-81214.Ar_EST_120301b_c9114%7Cvesicle.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig581%7Crcc1.for.82337-85302.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.82337-85302.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.82337-85302.120301b_Contig581%7Crcc1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c339%7Cequilibrative.for.87822-89970.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.87822-89970.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.87822-89970.Ar_EST_120301b_c339%7Cequilibrative.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14139%7Cftfucp0006h12_f_phred13_vc.for.87888-88867.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.87888-88867.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.87888-88867.Ar_EST_120301b_rep_c14139%7Cftfucp0006h12_f_phred13_vc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c457%7Cprotein.for.89276-90684.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.89276-90684.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.89276-90684.Ar_EST_120301b_c457%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18026%7Ccalponin.for.90716-92075.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90716-92075.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90716-92075.Ar_EST_120301b_c18026%7Ccalponin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1402%7Ccalponin.for.90627-92043.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90627-92043.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90627-92043.Ar_EST_120301b_c1402%7Ccalponin.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:47 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:41 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:48 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:46 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:55 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:57 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:44 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:59 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:48 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:32 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081691%7Cgb%7CEFC35595%2E1%7C.for.1746-3262.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.1746-3262.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.1746-3262.gi%7C284081691%7Cgb%7CEFC35595%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081706%7Cgb%7CEFC35605%2E1%7C.for.1746-3073.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.1746-3073.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.1746-3073.gi%7C284081706%7Cgb%7CEFC35605%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081561%7Cgb%7CEFC35518%2E1%7C.for.6248-8048.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6248-8048.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6248-8048.gi%7C284081561%7Cgb%7CEFC35518%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082242%7Cgb%7CEFC35988%2E1%7C.for.6401-8048.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6401-8048.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6401-8048.gi%7C284082242%7Cgb%7CEFC35988%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085654%7Cgb%7CEFC39336%2E1%7C.for.6314-8048.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6314-8048.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6314-8048.gi%7C284085654%7Cgb%7CEFC39336%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091439%7Cgb%7CEFC45086%2E1%7C.for.6284-8048.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6284-8048.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6284-8048.gi%7C284091439%7Cgb%7CEFC45086%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088654%7Cgb%7CEFC42316%2E1%7C.for.6371-8036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6371-8036.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6371-8036.gi%7C284088654%7Cgb%7CEFC42316%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086972%7Cgb%7CEFC40645%2E1%7C.for.6302-7785.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6302-7785.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6302-7785.gi%7C284086972%7Cgb%7CEFC40645%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093767%7Cgb%7CEFC47404%2E1%7C.for.6392-7782.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6392-7782.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6392-7782.gi%7C284093767%7Cgb%7CEFC47404%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090520%7Cgb%7CEFC44171%2E1%7C.for.18491-20354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18491-20354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18491-20354.gi%7C284090520%7Cgb%7CEFC44171%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089855%7Cgb%7CEFC43510%2E1%7C.for.18503-19993.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18503-19993.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18503-19993.gi%7C284089855%7Cgb%7CEFC43510%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089795%7Cgb%7CEFC43450%2E1%7C.for.18542-20120.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18542-20120.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18542-20120.gi%7C284089795%7Cgb%7CEFC43450%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089773%7Cgb%7CEFC43428%2E1%7C.for.18494-20360.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18494-20360.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18494-20360.gi%7C284089773%7Cgb%7CEFC43428%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084776%7Cgb%7CEFC38465%2E1%7C.for.18488-19705.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18488-19705.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18488-19705.gi%7C284084776%7Cgb%7CEFC38465%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087916%7Cgb%7CEFC41583%2E1%7C.for.24189-25692.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25692.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25692.gi%7C284087916%7Cgb%7CEFC41583%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088036%7Cgb%7CEFC41702%2E1%7C.for.24189-25710.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25710.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25710.gi%7C284088036%7Cgb%7CEFC41702%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093143%7Cgb%7CEFC46782%2E1%7C.for.24192-25698.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24192-25698.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24192-25698.gi%7C284093143%7Cgb%7CEFC46782%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085578%7Cgb%7CEFC39261%2E1%7C.for.24338-25701.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24338-25701.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24338-25701.gi%7C284085578%7Cgb%7CEFC39261%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084873%7Cgb%7CEFC38561%2E1%7C.for.24398-25704.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24398-25704.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24398-25704.gi%7C284084873%7Cgb%7CEFC38561%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083993%7Cgb%7CEFC37690%2E1%7C.for.24192-25683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24192-25683.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24192-25683.gi%7C284083993%7Cgb%7CEFC37690%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096422%7Cgb%7CEFC50050%2E1%7C.for.24189-25560.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25560.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25560.gi%7C284096422%7Cgb%7CEFC50050%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088224%7Cgb%7CEFC41889%2E1%7C.for.24192-25692.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24192-25692.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24192-25692.gi%7C284088224%7Cgb%7CEFC41889%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091020%7Cgb%7CEFC44669%2E1%7C.for.24189-25689.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25689.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25689.gi%7C284091020%7Cgb%7CEFC44669%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096438%7Cgb%7CEFC50066%2E1%7C.for.23972-25725.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.23972-25725.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.23972-25725.gi%7C284096438%7Cgb%7CEFC50066%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093840%7Cgb%7CEFC47476%2E1%7C.for.24189-25344.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25344.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25344.gi%7C284093840%7Cgb%7CEFC47476%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088894%7Cgb%7CEFC42555%2E1%7C.for.24180-25692.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24180-25692.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24180-25692.gi%7C284088894%7Cgb%7CEFC42555%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091589%7Cgb%7CEFC45235%2E1%7C.for.24189-25677.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25677.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25677.gi%7C284091589%7Cgb%7CEFC45235%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093839%7Cgb%7CEFC47475%2E1%7C.for.24467-25479.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24467-25479.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24467-25479.gi%7C284093839%7Cgb%7CEFC47475%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090020%7Cgb%7CEFC43674%2E1%7C.for.24189-25677.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25677.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25677.gi%7C284090020%7Cgb%7CEFC43674%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089972%7Cgb%7CEFC43626%2E1%7C.for.28936-30463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.28936-30463.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.28936-30463.gi%7C284089972%7Cgb%7CEFC43626%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086548%7Cgb%7CEFC40224%2E1%7C.for.30291-32151.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.30291-32151.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.30291-32151.gi%7C284086548%7Cgb%7CEFC40224%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087802%7Cgb%7CEFC41469%2E1%7C.for.37878-39943.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.37878-39943.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.37878-39943.gi%7C284087802%7Cgb%7CEFC41469%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085561%7Cgb%7CEFC39244%2E1%7C.for.37914-39934.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.37914-39934.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.37914-39934.gi%7C284085561%7Cgb%7CEFC39244%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087851%7Cgb%7CEFC41518%2E1%7C.for.40044-43012.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.40044-43012.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.40044-43012.gi%7C284087851%7Cgb%7CEFC41518%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097222%7Cgb%7CEFC50849%2E1%7C.for.42455-43652.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.42455-43652.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.42455-43652.gi%7C284097222%7Cgb%7CEFC50849%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086625%7Cgb%7CEFC40300%2E1%7C.for.43749-45472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43749-45472.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43749-45472.gi%7C284086625%7Cgb%7CEFC40300%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083255%7Cgb%7CEFC36960%2E1%7C.for.43749-45616.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43749-45616.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43749-45616.gi%7C284083255%7Cgb%7CEFC36960%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086635%7Cgb%7CEFC40310%2E1%7C.for.43749-45616.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43749-45616.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43749-45616.gi%7C284086635%7Cgb%7CEFC40310%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084290%7Cgb%7CEFC37984%2E1%7C.for.43749-45412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43749-45412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43749-45412.gi%7C284084290%7Cgb%7CEFC37984%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089955%7Cgb%7CEFC43609%2E1%7C.for.45082-47466.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.45082-47466.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.45082-47466.gi%7C284089955%7Cgb%7CEFC43609%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089829%7Cgb%7CEFC43484%2E1%7C.for.48907-51063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.48907-51063.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.48907-51063.gi%7C284089829%7Cgb%7CEFC43484%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089812%7Cgb%7CEFC43467%2E1%7C.for.50900-51968.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.50900-51968.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.50900-51968.gi%7C284089812%7Cgb%7CEFC43467%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088559%7Cgb%7CEFC42222%2E1%7C.for.54523-58496.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.54523-58496.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.54523-58496.gi%7C284088559%7Cgb%7CEFC42222%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083620%7Cgb%7CEFC37321%2E1%7C.for.54475-58466.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.54475-58466.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.54475-58466.gi%7C284083620%7Cgb%7CEFC37321%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095187%7Cgb%7CEFC48819%2E1%7C.for.58139-59411.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58139-59411.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58139-59411.gi%7C284095187%7Cgb%7CEFC48819%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088013%7Cgb%7CEFC41679%2E1%7C.for.58145-59459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58145-59459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58145-59459.gi%7C284088013%7Cgb%7CEFC41679%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088877%7Cgb%7CEFC42538%2E1%7C.for.58079-59411.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58079-59411.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58079-59411.gi%7C284088877%7Cgb%7CEFC42538%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097251%7Cgb%7CEFC50878%2E1%7C.for.58136-59432.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58136-59432.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58136-59432.gi%7C284097251%7Cgb%7CEFC50878%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096640%7Cgb%7CEFC50267%2E1%7C.for.58139-59423.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58139-59423.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58139-59423.gi%7C284096640%7Cgb%7CEFC50267%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095576%7Cgb%7CEFC49206%2E1%7C.for.58136-59444.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58136-59444.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58136-59444.gi%7C284095576%7Cgb%7CEFC49206%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083114%7Cgb%7CEFC36821%2E1%7C.for.62510-64790.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.62510-64790.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.62510-64790.gi%7C284083114%7Cgb%7CEFC36821%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091204%7Cgb%7CEFC44852%2E1%7C.for.66491-67593.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.66491-67593.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.66491-67593.gi%7C284091204%7Cgb%7CEFC44852%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089467%7Cgb%7CEFC43124%2E1%7C.for.70944-72178.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.70944-72178.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.70944-72178.gi%7C284089467%7Cgb%7CEFC43124%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091753%7Cgb%7CEFC45398%2E1%7C.for.78704-80046.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.78704-80046.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.78704-80046.gi%7C284091753%7Cgb%7CEFC45398%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094302%7Cgb%7CEFC47936%2E1%7C.for.78710-80052.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.78710-80052.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.78710-80052.gi%7C284094302%7Cgb%7CEFC47936%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089980%7Cgb%7CEFC43634%2E1%7C.for.78704-80046.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.78704-80046.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.78704-80046.gi%7C284089980%7Cgb%7CEFC43634%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083305%7Cgb%7CEFC37010%2E1%7C.for.90489-92214.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90489-92214.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90489-92214.gi%7C284083305%7Cgb%7CEFC37010%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086189%7Cgb%7CEFC39867%2E1%7C.for.90489-92214.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90489-92214.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90489-92214.gi%7C284086189%7Cgb%7CEFC39867%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082382%7Cgb%7CEFC36106%2E1%7C.for.90489-92214.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90489-92214.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90489-92214.gi%7C284082382%7Cgb%7CEFC36106%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:18 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:20 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 2 ...processing 1 of 2 total clusters:20 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.1925-4163.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.1925-4163.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.1925-4163.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.8698-9606.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.8698-9606.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.8698-9606.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.14145-15107.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.14145-15107.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.14145-15107.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.15856-20160.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.15856-20160.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.15856-20160.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.20920-22441.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.20920-22441.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.20920-22441.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.24226-26714.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.24226-26714.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.24226-26714.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.29135-30263.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.29135-30263.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.29135-30263.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.40243-43899.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.40243-43899.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.40243-43899.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.54674-59244.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.54674-59244.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.54674-59244.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.65794-66900.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.65794-66900.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.65794-66900.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.78887-80447.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.78887-80447.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.78887-80447.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.88021-89770.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.88021-89770.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.88021-89770.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.90909-91875.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.90909-91875.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.90909-91875.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.6570-7836.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.6570-7836.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.6570-7836.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.13029-13693.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.13029-13693.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.13029-13693.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.22867-23866.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.22867-23866.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.22867-23866.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.26460-28106.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.26460-28106.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.26460-28106.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.30472-31951.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.30472-31951.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.30472-31951.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.31983-35892.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.31983-35892.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.31983-35892.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.37681-39774.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.37681-39774.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.37681-39774.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.43948-47698.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.43948-47698.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.43948-47698.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.49106-50961.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.49106-50961.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.49106-50961.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.51024-51988.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.51024-51988.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.51024-51988.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.62656-64590.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.62656-64590.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.62656-64590.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.71143-71978.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.71143-71978.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.71143-71978.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.73745-75386.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.73745-75386.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.73745-75386.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.80064-81014.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.80064-81014.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.80064-81014.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.82536-85102.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.82536-85102.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.82536-85102.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.89475-90484.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.89475-90484.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.89475-90484.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.90688-92014.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.90688-92014.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.90688-92014.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C15 Length: 88282 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:5 current j:0 j_size:5 current j:1 j_size:5 current j:2 j_size:5 current j:3 j_size:5 current j:4 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C15.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C15.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:6 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13711%7C1108770679036.for.1-1127.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.1-1127.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.1-1127.Ar_EST_120301b_c13711%7C1108770679036.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10644%7Cclaudia-husseneder_plate25-d09.for.3186-4275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.3186-4275.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.3186-4275.Ar_EST_120301b_c10644%7Cclaudia-husseneder_plate25-d09.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7062%7Cprotein.for.9348-10762.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9348-10762.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9348-10762.Ar_EST_120301b_rep_c7062%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20489%7Cprotein.for.9348-10472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9348-10472.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9348-10472.Ar_EST_120301b_rep_c20489%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19779%7Cprotein.for.9460-10762.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9460-10762.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9460-10762.Ar_EST_120301b_rep_c19779%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6989%7Cprotein.for.9353-10747.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9353-10747.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9353-10747.Ar_EST_120301b_rep_c6989%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7201%7Cprotein.for.9452-10750.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9452-10750.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9452-10750.Ar_EST_120301b_rep_c7201%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20535%7C40s.for.9635-10758.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9635-10758.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9635-10758.Ar_EST_120301b_rep_c20535%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c847%7Csphingomyelin.for.16096-17482.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.16096-17482.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.16096-17482.Ar_EST_120301b_c847%7Csphingomyelin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15302%7Camp-dependent.for.17102-18099.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.17102-18099.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.17102-18099.Ar_EST_120301b_c15302%7Camp-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8900%7Cpropionate--.for.17355-18785.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.17355-18785.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.17355-18785.Ar_EST_120301b_c8900%7Cpropionate--.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12453%7Cras-related.for.18577-19838.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.18577-19838.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.18577-19838.Ar_EST_120301b_c12453%7Cras-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c101%7Chormone.for.20132-22409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.20132-22409.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.20132-22409.Ar_EST_120301b_c101%7Chormone.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3533%7Clipase.for.21106-23324.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.21106-23324.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.21106-23324.Ar_EST_120301b_c3533%7Clipase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10006%7Cau284314.for.23945-25162.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.23945-25162.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.23945-25162.Ar_EST_120301b_rep_c10006%7Cau284314.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3682%7Cnegative.for.24459-26498.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.24459-26498.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.24459-26498.Ar_EST_120301b_c3682%7Cnegative.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig488%7Cv-type.for.25755-27402.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25755-27402.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25755-27402.120301b_Contig488%7Cv-type.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19184%7Cat3g58730-like.for.25880-27038.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25880-27038.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25880-27038.Ar_EST_120301b_c19184%7Cat3g58730-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12067%7Cfn735362.for.27398-28751.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.27398-28751.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.27398-28751.Ar_EST_120301b_c12067%7Cfn735362.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4543%7Cv-type.for.28132-30143.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.28132-30143.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.28132-30143.Ar_EST_120301b_rep_c4543%7Cv-type.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6117%7Cv-type.for.28143-30220.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.28143-30220.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.28143-30220.Ar_EST_120301b_rep_c6117%7Cv-type.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6452%7Cv-atpase.for.28152-29423.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.28152-29423.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.28152-29423.Ar_EST_120301b_rep_c6452%7Cv-atpase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16840%7Cstructural.for.29632-31068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.29632-31068.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.29632-31068.Ar_EST_120301b_c16840%7Cstructural.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10412%7Cmyosin.for.30668-32164.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.30668-32164.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.30668-32164.Ar_EST_120301b_c10412%7Cmyosin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9051%7Cpoly.for.36033-37417.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.36033-37417.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.36033-37417.Ar_EST_120301b_c9051%7Cpoly.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19738%7Cpoly.for.35801-37206.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.35801-37206.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.35801-37206.Ar_EST_120301b_c19738%7Cpoly.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17368%7C5348_b09_d18z_077.for.36714-37988.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.36714-37988.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.36714-37988.Ar_EST_120301b_c17368%7C5348_b09_d18z_077.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17502%7Csperm.for.44875-46147.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.44875-46147.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.44875-46147.Ar_EST_120301b_c17502%7Csperm.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10104%7Cnbero1ch_t3_003_f01_28apr2006_005.for.46523-47950.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.46523-47950.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.46523-47950.Ar_EST_120301b_c10104%7Cnbero1ch_t3_003_f01_28apr2006_005.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15477%7C010511olea005840ht.for.47761-48883.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.47761-48883.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.47761-48883.Ar_EST_120301b_c15477%7C010511olea005840ht.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12496%7Cmitotic.for.48559-49821.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.48559-49821.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.48559-49821.Ar_EST_120301b_c12496%7Cmitotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig631%7Cabc.for.49870-51710.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.49870-51710.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.49870-51710.120301b_Contig631%7Cabc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig362%7Cabc.for.50804-52767.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.50804-52767.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.50804-52767.120301b_Contig362%7Cabc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig591%7Cactin.for.52012-54049.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52012-54049.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52012-54049.120301b_Contig591%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19773%7Cactin.for.52309-53610.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52309-53610.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52309-53610.Ar_EST_120301b_c19773%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14966%7Cras-related.for.58383-59584.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.58383-59584.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.58383-59584.Ar_EST_120301b_rep_c14966%7Cras-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14539%7Chydra.for.65120-66122.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.65120-66122.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.65120-66122.Ar_EST_120301b_c14539%7Chydra.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13213%7Cintron-binding.for.68211-69663.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.68211-69663.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.68211-69663.Ar_EST_120301b_c13213%7Cintron-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2756%7Csen1p.for.68632-69999.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.68632-69999.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.68632-69999.Ar_EST_120301b_c2756%7Csen1p.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10437%7Cintron-binding.for.69298-70670.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.69298-70670.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.69298-70670.Ar_EST_120301b_c10437%7Cintron-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15450%7Cintron-binding.for.70035-71377.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.70035-71377.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.70035-71377.Ar_EST_120301b_c15450%7Cintron-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1912%7Cpatatin.for.71801-73209.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.71801-73209.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.71801-73209.Ar_EST_120301b_c1912%7Cpatatin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10248%7Cfp871808.for.72440-73995.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.72440-73995.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.72440-73995.Ar_EST_120301b_c10248%7Cfp871808.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11840%7Cmembrane.for.73620-75243.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.73620-75243.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.73620-75243.Ar_EST_120301b_c11840%7Cmembrane.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14999%7Cpredicted.for.81251-82657.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.81251-82657.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.81251-82657.Ar_EST_120301b_c14999%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8376%7Cperoxisomal.for.82450-83986.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.82450-83986.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.82450-83986.Ar_EST_120301b_c8376%7Cperoxisomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19284%7Cagencourt_61881600.for.82251-83486.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.82251-83486.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.82251-83486.Ar_EST_120301b_c19284%7Cagencourt_61881600.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15193%7Cabc.for.84208-85171.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84208-85171.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84208-85171.Ar_EST_120301b_c15193%7Cabc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14003%7Cabc.for.85483-86603.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.85483-86603.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.85483-86603.Ar_EST_120301b_c14003%7Cabc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16443%7Caplysia.for.87251-88282.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.87251-88282.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.87251-88282.Ar_EST_120301b_c16443%7Caplysia.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:44 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:40 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:44 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:50 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:43 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:53 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:60 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:58 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:43 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:36 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093316%7Cgb%7CEFC46954%2E1%7C.for.9415-10717.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9415-10717.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9415-10717.gi%7C284093316%7Cgb%7CEFC46954%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091441%7Cgb%7CEFC45088%2E1%7C.for.10193-12362.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.10193-12362.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.10193-12362.gi%7C284091441%7Cgb%7CEFC45088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091342%7Cgb%7CEFC44989%2E1%7C.for.11672-13489.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.11672-13489.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.11672-13489.gi%7C284091342%7Cgb%7CEFC44989%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088481%7Cgb%7CEFC42144%2E1%7C.for.17102-18870.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.17102-18870.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.17102-18870.gi%7C284088481%7Cgb%7CEFC42144%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084487%7Cgb%7CEFC38179%2E1%7C.for.25758-27251.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25758-27251.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25758-27251.gi%7C284084487%7Cgb%7CEFC38179%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090397%7Cgb%7CEFC44049%2E1%7C.for.25761-27182.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25761-27182.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25761-27182.gi%7C284090397%7Cgb%7CEFC44049%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083009%7Cgb%7CEFC36717%2E1%7C.for.25761-27230.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25761-27230.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25761-27230.gi%7C284083009%7Cgb%7CEFC36717%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092236%7Cgb%7CEFC45879%2E1%7C.for.28469-30195.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.28469-30195.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.28469-30195.gi%7C284092236%7Cgb%7CEFC45879%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096677%7Cgb%7CEFC50304%2E1%7C.for.29853-30916.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.29853-30916.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.29853-30916.gi%7C284096677%7Cgb%7CEFC50304%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091339%7Cgb%7CEFC44986%2E1%7C.for.34890-37451.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.34890-37451.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.34890-37451.gi%7C284091339%7Cgb%7CEFC44986%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089040%7Cgb%7CEFC42700%2E1%7C.for.49909-52718.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.49909-52718.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.49909-52718.gi%7C284089040%7Cgb%7CEFC42700%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082540%7Cgb%7CEFC36256%2E1%7C.for.50258-52748.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.50258-52748.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.50258-52748.gi%7C284082540%7Cgb%7CEFC36256%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089317%7Cgb%7CEFC42975%2E1%7C.for.50602-52748.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.50602-52748.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.50602-52748.gi%7C284089317%7Cgb%7CEFC42975%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093022%7Cgb%7CEFC46662%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284093022%7Cgb%7CEFC46662%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084913%7Cgb%7CEFC38601%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284084913%7Cgb%7CEFC38601%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091907%7Cgb%7CEFC45551%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284091907%7Cgb%7CEFC45551%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081216%7Cgb%7CEFC35341%2E1%7C.for.52748-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52748-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52748-54057.gi%7C284081216%7Cgb%7CEFC35341%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094255%7Cgb%7CEFC47890%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284094255%7Cgb%7CEFC47890%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085698%7Cgb%7CEFC39380%2E1%7C.for.52271-54060.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52271-54060.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52271-54060.gi%7C284085698%7Cgb%7CEFC39380%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082818%7Cgb%7CEFC36529%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284082818%7Cgb%7CEFC36529%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092206%7Cgb%7CEFC45849%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284092206%7Cgb%7CEFC45849%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093050%7Cgb%7CEFC46689%2E1%7C.for.52328-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52328-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52328-54057.gi%7C284093050%7Cgb%7CEFC46689%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081499%7Cgb%7CEFC35479%2E1%7C.for.52325-53676.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52325-53676.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52325-53676.gi%7C284081499%7Cgb%7CEFC35479%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090387%7Cgb%7CEFC44039%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284090387%7Cgb%7CEFC44039%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081169%7Cgb%7CEFC35319%2E1%7C.for.52331-53442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52331-53442.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52331-53442.gi%7C284081169%7Cgb%7CEFC35319%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091080%7Cgb%7CEFC44728%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284091080%7Cgb%7CEFC44728%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C7140539%7Cgb%7CAAF37002%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C7140539%7Cgb%7CAAF37002%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C41016928%7Csp%7CQ9NJV4%2E1%7CACT1_NAEGR.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C41016928%7Csp%7CQ9NJV4%2E1%7CACT1_NAEGR.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089912%7Cgb%7CEFC43567%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284089912%7Cgb%7CEFC43567%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091169%7Cgb%7CEFC44817%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284091169%7Cgb%7CEFC44817%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089027%7Cgb%7CEFC42687%2E1%7C.for.52334-54063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54063.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54063.gi%7C284089027%7Cgb%7CEFC42687%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094182%7Cgb%7CEFC47817%2E1%7C.for.52331-53367.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52331-53367.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52331-53367.gi%7C284094182%7Cgb%7CEFC47817%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092093%7Cgb%7CEFC45736%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284092093%7Cgb%7CEFC45736%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083654%7Cgb%7CEFC37355%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284083654%7Cgb%7CEFC37355%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096006%7Cgb%7CEFC49635%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284096006%7Cgb%7CEFC49635%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093025%7Cgb%7CEFC46665%2E1%7C.for.52556-54066.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52556-54066.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52556-54066.gi%7C284093025%7Cgb%7CEFC46665%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090925%7Cgb%7CEFC44574%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284090925%7Cgb%7CEFC44574%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086629%7Cgb%7CEFC40304%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284086629%7Cgb%7CEFC40304%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095925%7Cgb%7CEFC49554%2E1%7C.for.52331-54066.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52331-54066.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52331-54066.gi%7C284095925%7Cgb%7CEFC49554%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084108%7Cgb%7CEFC37804%2E1%7C.for.52721-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52721-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52721-54057.gi%7C284084108%7Cgb%7CEFC37804%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082060%7Cgb%7CEFC35846%2E1%7C.for.58454-59577.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.58454-59577.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.58454-59577.gi%7C284082060%7Cgb%7CEFC35846%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082068%7Cgb%7CEFC35853%2E1%7C.for.61526-64275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64275.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64275.gi%7C284082068%7Cgb%7CEFC35853%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084087%7Cgb%7CEFC37783%2E1%7C.for.61526-64254.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64254.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64254.gi%7C284084087%7Cgb%7CEFC37783%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089082%7Cgb%7CEFC42742%2E1%7C.for.61514-64407.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61514-64407.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61514-64407.gi%7C284089082%7Cgb%7CEFC42742%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088982%7Cgb%7CEFC42642%2E1%7C.for.61526-64446.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64446.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64446.gi%7C284088982%7Cgb%7CEFC42642%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082474%7Cgb%7CEFC36192%2E1%7C.for.61526-64428.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.gi%7C284082474%7Cgb%7CEFC36192%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082092%7Cgb%7CEFC35872%2E1%7C.for.61481-64428.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61481-64428.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61481-64428.gi%7C284082092%7Cgb%7CEFC35872%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085337%7Cgb%7CEFC39022%2E1%7C.for.61526-64410.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64410.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64410.gi%7C284085337%7Cgb%7CEFC39022%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083266%7Cgb%7CEFC36971%2E1%7C.for.61487-64431.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61487-64431.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61487-64431.gi%7C284083266%7Cgb%7CEFC36971%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093774%7Cgb%7CEFC47410%2E1%7C.for.61526-64284.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64284.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64284.gi%7C284093774%7Cgb%7CEFC47410%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089683%7Cgb%7CEFC43339%2E1%7C.for.61526-64428.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.gi%7C284089683%7Cgb%7CEFC43339%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081057%7Cgb%7CEFC35279%2E1%7C.for.61514-64422.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61514-64422.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61514-64422.gi%7C284081057%7Cgb%7CEFC35279%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082440%7Cgb%7CEFC36159%2E1%7C.for.61592-64470.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61592-64470.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61592-64470.gi%7C284082440%7Cgb%7CEFC36159%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082314%7Cgb%7CEFC36048%2E1%7C.for.61526-64428.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.gi%7C284082314%7Cgb%7CEFC36048%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081028%7Cgb%7CEFC35268%2E1%7C.for.61526-64428.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.gi%7C284081028%7Cgb%7CEFC35268%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093921%7Cgb%7CEFC47557%2E1%7C.for.61526-64428.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.gi%7C284093921%7Cgb%7CEFC47557%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082136%7Cgb%7CEFC35906%2E1%7C.for.61526-64428.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.gi%7C284082136%7Cgb%7CEFC35906%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084171%7Cgb%7CEFC37866%2E1%7C.for.61526-64467.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64467.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64467.gi%7C284084171%7Cgb%7CEFC37866%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080810%7Cgb%7CEFC35195%2E1%7C.for.61640-64254.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61640-64254.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61640-64254.gi%7C284080810%7Cgb%7CEFC35195%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096409%7Cgb%7CEFC50037%2E1%7C.for.81597-82880.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.81597-82880.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.81597-82880.gi%7C284096409%7Cgb%7CEFC50037%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082808%7Cgb%7CEFC36519%2E1%7C.for.82936-84050.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.82936-84050.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.82936-84050.gi%7C284082808%7Cgb%7CEFC36519%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089213%7Cgb%7CEFC42872%2E1%7C.for.83354-88282.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.83354-88282.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.83354-88282.gi%7C284089213%7Cgb%7CEFC42872%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096078%7Cgb%7CEFC49707%2E1%7C.for.84602-86190.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84602-86190.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84602-86190.gi%7C284096078%7Cgb%7CEFC49707%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096910%7Cgb%7CEFC50537%2E1%7C.for.84545-86139.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84545-86139.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84545-86139.gi%7C284096910%7Cgb%7CEFC50537%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088030%7Cgb%7CEFC41696%2E1%7C.for.83441-88282.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.83441-88282.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.83441-88282.gi%7C284088030%7Cgb%7CEFC41696%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094270%7Cgb%7CEFC47905%2E1%7C.for.84614-86178.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84614-86178.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84614-86178.gi%7C284094270%7Cgb%7CEFC47905%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094672%7Cgb%7CEFC48305%2E1%7C.for.84695-86136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84695-86136.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84695-86136.gi%7C284094672%7Cgb%7CEFC48305%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094721%7Cgb%7CEFC48354%2E1%7C.for.84614-86181.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84614-86181.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84614-86181.gi%7C284094721%7Cgb%7CEFC48354%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 27 ...processing 1 of 27 ...processing 2 of 27 ...processing 3 of 27 ...processing 4 of 27 ...processing 5 of 27 ...processing 6 of 27 ...processing 7 of 27 ...processing 8 of 27 ...processing 9 of 27 ...processing 10 of 27 ...processing 11 of 27 ...processing 12 of 27 ...processing 13 of 27 ...processing 14 of 27 ...processing 15 of 27 ...processing 16 of 27 ...processing 17 of 27 ...processing 18 of 27 ...processing 19 of 27 ...processing 20 of 27 ...processing 21 of 27 ...processing 22 of 27 ...processing 23 of 27 ...processing 24 of 27 ...processing 25 of 27 ...processing 26 of 27 total clusters:12 now processing 0 ...processing 0 of 11 ...processing 1 of 11 ...processing 2 of 11 ...processing 3 of 11 ...processing 4 of 11 ...processing 5 of 11 ...processing 6 of 11 ...processing 7 of 11 ...processing 8 of 11 ...processing 9 of 11 ...processing 10 of 11 total clusters:12 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:12 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 26 ...processing 1 of 26 ...processing 2 of 26 ...processing 3 of 26 ...processing 4 of 26 ...processing 5 of 26 ...processing 6 of 26 ...processing 7 of 26 ...processing 8 of 26 ...processing 9 of 26 ...processing 10 of 26 ...processing 11 of 26 ...processing 12 of 26 ...processing 13 of 26 ...processing 14 of 26 ...processing 15 of 26 ...processing 16 of 26 ...processing 17 of 26 ...processing 18 of 26 ...processing 19 of 26 ...processing 20 of 26 ...processing 21 of 26 ...processing 22 of 26 ...processing 23 of 26 ...processing 24 of 26 ...processing 25 of 26 total clusters:12 now processing 0 ...processing 0 of 20 ...processing 1 of 20 ...processing 2 of 20 ...processing 3 of 20 ...processing 4 of 20 ...processing 5 of 20 ...processing 6 of 20 ...processing 7 of 20 ...processing 8 of 20 ...processing 9 of 20 ...processing 10 of 20 ...processing 11 of 20 ...processing 12 of 20 ...processing 13 of 20 ...processing 14 of 20 ...processing 15 of 20 ...processing 16 of 20 ...processing 17 of 20 ...processing 18 of 20 ...processing 19 of 20 ...trimming the rest total clusters:12 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:19 now processing 0 total clusters:19 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:19 now processing 0 total clusters:19 now processing 0 total clusters:19 now processing 0 total clusters:19 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:19 now processing 0 total clusters:19 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:19 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:19 now processing 0 total clusters:19 now processing 0 total clusters:19 now processing 0 total clusters:19 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:19 now processing 0 total clusters:19 now processing 0 total clusters:19 now processing 0 total clusters:19 now processing 0 total clusters:19 now processing 0 total clusters:19 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:17 now processing 0 ...processing 0 of 20 ...processing 1 of 20 ...processing 2 of 20 ...processing 3 of 20 ...processing 4 of 20 ...processing 5 of 20 ...processing 6 of 20 ...processing 7 of 20 ...processing 8 of 20 ...processing 9 of 20 ...processing 10 of 20 ...processing 11 of 20 ...processing 12 of 20 ...processing 13 of 20 ...processing 14 of 20 ...processing 15 of 20 ...processing 16 of 20 ...processing 17 of 20 ...processing 18 of 20 ...processing 19 of 20 ...trimming the rest ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.65-927.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.65-927.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.65-927.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.10392-12162.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.10392-12162.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.10392-12162.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.16295-17282.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.16295-17282.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.16295-17282.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.18776-19638.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.18776-19638.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.18776-19638.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.24658-27202.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.24658-27202.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.24658-27202.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.27597-30020.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.27597-30020.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.27597-30020.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.35089-37251.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.35089-37251.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.35089-37251.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.45074-45947.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.45074-45947.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.45074-45947.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.46722-47750.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.46722-47750.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.46722-47750.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.48758-49621.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.48758-49621.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.48758-49621.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.50069-52569.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.50069-52569.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.50069-52569.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.58572-59384.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.58572-59384.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.58572-59384.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.72000-75043.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.72000-75043.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.72000-75043.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.81796-83836.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.81796-83836.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.81796-83836.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.9547-10562.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.9547-10562.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.9547-10562.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.11871-13289.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.11871-13289.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.11871-13289.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.17554-18622.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.17554-18622.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.17554-18622.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.20331-23124.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.20331-23124.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.20331-23124.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.29831-31964.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.29831-31964.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.29831-31964.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.36913-37788.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.36913-37788.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.36913-37788.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.47960-48712.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.47960-48712.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.47960-48712.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.52211-53875.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.52211-53875.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.52211-53875.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.61680-64294.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.61680-64294.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.61680-64294.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.68410-71177.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.68410-71177.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.68410-71177.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.81450-82457.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.81450-82457.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.81450-82457.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.83553-88154.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.83553-88154.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.83553-88154.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C16 Length: 52806 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:1 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C16.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C16.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig74%7Cras.for.4626-7621.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.4626-7621.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.4626-7621.120301b_Contig74%7Cras.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16859%7Cras.for.2491-3652.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.2491-3652.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.2491-3652.Ar_EST_120301b_c16859%7Cras.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1186%7Csecreted.for.2145-4070.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.2145-4070.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.2145-4070.120301b_Contig1186%7Csecreted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20200%7Cg.for.5582-6832.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.5582-6832.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.5582-6832.Ar_EST_120301b_rep_c20200%7Cg.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7704%7C40s.for.2996-5442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.2996-5442.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.2996-5442.Ar_EST_120301b_c7704%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14467%7Ccu605174.for.8339-9523.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.8339-9523.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.8339-9523.Ar_EST_120301b_rep_c14467%7Ccu605174.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7171%7Cly_yit_dp1235.for.8342-9199.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.8342-9199.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.8342-9199.Ar_EST_120301b_rep_c7171%7Cly_yit_dp1235.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16260%7Cmethyltransferase.for.11915-13043.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.11915-13043.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.11915-13043.Ar_EST_120301b_c16260%7Cmethyltransferase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c612%7C3.for.13756-15898.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.13756-15898.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.13756-15898.Ar_EST_120301b_c612%7C3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14163%7Cheterotrimeric.for.14536-15940.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14536-15940.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14536-15940.Ar_EST_120301b_c14163%7Cheterotrimeric.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1012%7Cras-related.for.16093-17594.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.16093-17594.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.16093-17594.120301b_Contig1012%7Cras-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9994%7CFP067752.for.20020-21546.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.20020-21546.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.20020-21546.Ar_EST_120301b_c9994%7CFP067752.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19755%7C---NA---.for.19886-21213.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.19886-21213.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.19886-21213.Ar_EST_120301b_c19755%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1652%7Cpredicted.for.22962-24406.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.22962-24406.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.22962-24406.Ar_EST_120301b_c1652%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12976%7Cdym_chick.for.24127-25530.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.24127-25530.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.24127-25530.Ar_EST_120301b_c12976%7Cdym_chick.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4302%7Cnad-dependent.for.27610-29630.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.27610-29630.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.27610-29630.Ar_EST_120301b_rep_c4302%7Cnad-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4959%7Cnad-dependent.for.27638-29648.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.27638-29648.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.27638-29648.Ar_EST_120301b_rep_c4959%7Cnad-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13941%7Cnucleotide.for.28457-29556.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.28457-29556.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.28457-29556.Ar_EST_120301b_rep_c13941%7Cnucleotide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14530%7Chypothetical.for.29417-30831.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.29417-30831.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.29417-30831.Ar_EST_120301b_c14530%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1221%7Cgateway.for.31131-32485.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.31131-32485.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.31131-32485.Ar_EST_120301b_c1221%7Cgateway.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2400%7Ctransmembrane.for.31863-33502.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.31863-33502.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.31863-33502.Ar_EST_120301b_c2400%7Ctransmembrane.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16743%7Catp.for.36527-37979.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.36527-37979.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.36527-37979.Ar_EST_120301b_c16743%7Catp.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3646%7Cisoform.for.35541-37378.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.35541-37378.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.35541-37378.Ar_EST_120301b_c3646%7Cisoform.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16709%7C---NA---.for.38655-40235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.38655-40235.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.38655-40235.Ar_EST_120301b_c16709%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10548%7Cpopulus.for.38111-39685.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.38111-39685.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.38111-39685.Ar_EST_120301b_c10548%7Cpopulus.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12154%7Ctransposase.for.41740-43156.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.41740-43156.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.41740-43156.Ar_EST_120301b_c12154%7Ctransposase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13040%7Ccnsn01-f-004961-501.for.44089-45039.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.44089-45039.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.44089-45039.Ar_EST_120301b_c13040%7Ccnsn01-f-004961-501.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13845%7C---NA---.for.49598-50912.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.49598-50912.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.49598-50912.Ar_EST_120301b_c13845%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13073%7Cccashart06b08r.for.50532-51611.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.50532-51611.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.50532-51611.Ar_EST_120301b_c13073%7Cccashart06b08r.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13711%7C1108770679036.for.51968-52806.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.51968-52806.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.51968-52806.Ar_EST_120301b_c13711%7C1108770679036.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:6 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:12 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:5 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:7 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:6 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:6 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:9 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:6 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:11 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:6 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081967%7Cgb%7CEFC35778%2E1%7C.for.6355-7489.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.6355-7489.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.6355-7489.gi%7C284081967%7Cgb%7CEFC35778%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092652%7Cgb%7CEFC46293%2E1%7C.for.14705-16123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14705-16123.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14705-16123.gi%7C284092652%7Cgb%7CEFC46293%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084915%7Cgb%7CEFC38603%2E1%7C.for.14639-16114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14639-16114.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14639-16114.gi%7C284084915%7Cgb%7CEFC38603%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084712%7Cgb%7CEFC38402%2E1%7C.for.14705-16123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14705-16123.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14705-16123.gi%7C284084712%7Cgb%7CEFC38402%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090770%7Cgb%7CEFC44420%2E1%7C.for.14678-16123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14678-16123.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14678-16123.gi%7C284090770%7Cgb%7CEFC44420%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083518%7Cgb%7CEFC37220%2E1%7C.for.14693-16123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14693-16123.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14693-16123.gi%7C284083518%7Cgb%7CEFC37220%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095980%7Cgb%7CEFC49609%2E1%7C.for.14738-16123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14738-16123.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14738-16123.gi%7C284095980%7Cgb%7CEFC49609%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091782%7Cgb%7CEFC45427%2E1%7C.for.14705-15853.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14705-15853.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14705-15853.gi%7C284091782%7Cgb%7CEFC45427%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085503%7Cgb%7CEFC39186%2E1%7C.for.14732-16123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14732-16123.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14732-16123.gi%7C284085503%7Cgb%7CEFC39186%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093388%7Cgb%7CEFC47026%2E1%7C.for.14798-15723.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14798-15723.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14798-15723.gi%7C284093388%7Cgb%7CEFC47026%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095344%7Cgb%7CEFC48975%2E1%7C.for.14705-16105.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14705-16105.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14705-16105.gi%7C284095344%7Cgb%7CEFC48975%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095754%7Cgb%7CEFC49384%2E1%7C.for.14693-16105.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14693-16105.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14693-16105.gi%7C284095754%7Cgb%7CEFC49384%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084832%7Cgb%7CEFC38521%2E1%7C.for.16083-17862.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.16083-17862.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.16083-17862.gi%7C284084832%7Cgb%7CEFC38521%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096643%7Cgb%7CEFC50270%2E1%7C.for.16077-17862.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.16077-17862.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.16077-17862.gi%7C284096643%7Cgb%7CEFC50270%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097000%7Cgb%7CEFC50627%2E1%7C.for.17195-19077.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.17195-19077.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.17195-19077.gi%7C284097000%7Cgb%7CEFC50627%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095112%7Cgb%7CEFC48744%2E1%7C.for.25157-28242.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.25157-28242.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.25157-28242.gi%7C284095112%7Cgb%7CEFC48744%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091376%7Cgb%7CEFC45023%2E1%7C.for.27629-29588.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.27629-29588.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.27629-29588.gi%7C284091376%7Cgb%7CEFC45023%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:5 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:5 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:5 now processing 0 total clusters:5 now processing 0 total clusters:5 now processing 0 in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:4 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:4 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:4 now processing 0 total clusters:4 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:10 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:10 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:10 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.8491-9323.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.8491-9323.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.8491-9323.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.20085-21013.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.20085-21013.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.20085-21013.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.23073-25330.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.23073-25330.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.23073-25330.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.29616-32285.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.29616-32285.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.29616-32285.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.35740-37784.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.35740-37784.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.35740-37784.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.38304-40035.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.38304-40035.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.38304-40035.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.52167-52806.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.52167-52806.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.52167-52806.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.2344-7421.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.2344-7421.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.2344-7421.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.14735-15923.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.14735-15923.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.14735-15923.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.16276-18877.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.16276-18877.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.16276-18877.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.25356-29430.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.25356-29430.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.25356-29430.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.32062-33302.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.32062-33302.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.32062-33302.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.41939-42958.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.41939-42958.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.41939-42958.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.44288-44861.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.44288-44861.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.44288-44861.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.49797-50712.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.49797-50712.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.49797-50712.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C17 Length: 92022 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:6 current j:0 j_size:6 current j:1 j_size:6 current j:2 j_size:6 current j:3 j_size:6 current j:4 j_size:6 current j:5 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C17.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C17.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14841%7C---NA---.for.1416-2440.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.1416-2440.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.1416-2440.Ar_EST_120301b_c14841%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12481%7Cpt11-c2-300-003-e01-.for.2068-3358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.2068-3358.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.2068-3358.Ar_EST_120301b_c12481%7Cpt11-c2-300-003-e01-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c152%7Cdisulfide.for.1875-3275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.1875-3275.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.1875-3275.Ar_EST_120301b_c152%7Cdisulfide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12224%7Cproteasome-associated.for.2749-4281.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.2749-4281.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.2749-4281.Ar_EST_120301b_c12224%7Cproteasome-associated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3338%7Cproteasome-associated.for.3465-5694.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.3465-5694.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.3465-5694.Ar_EST_120301b_c3338%7Cproteasome-associated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16010%7Cproteasome-associated.for.5217-6552.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.5217-6552.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.5217-6552.Ar_EST_120301b_c16010%7Cproteasome-associated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14875.for.5785-6871.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.5785-6871.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.5785-6871.Ar_EST_120301b_c14875.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18129%7Cheat.for.7223-8542.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.7223-8542.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.7223-8542.Ar_EST_120301b_c18129%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15944%7C603773189f1.for.10823-11971.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.10823-11971.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.10823-11971.Ar_EST_120301b_c15944%7C603773189f1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11028%7Cauxin.for.11347-13098.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.11347-13098.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.11347-13098.Ar_EST_120301b_c11028%7Cauxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3067%7Crna-binding.for.12713-14508.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.12713-14508.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.12713-14508.Ar_EST_120301b_c3067%7Crna-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15013%7Cnacnu32to.for.16800-18175.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.16800-18175.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.16800-18175.Ar_EST_120301b_c15013%7Cnacnu32to.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3173%7Cconserved.for.16013-17915.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.16013-17915.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.16013-17915.Ar_EST_120301b_c3173%7Cconserved.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8941%7Cmrna-decapping.for.21273-22620.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.21273-22620.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.21273-22620.Ar_EST_120301b_c8941%7Cmrna-decapping.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8091%7Cgram.for.25540-27155.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.25540-27155.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.25540-27155.Ar_EST_120301b_c8091%7Cgram.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9708%7Cprotein.for.26626-28000.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.26626-28000.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.26626-28000.Ar_EST_120301b_c9708%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2949%7Cprotein.for.27412-29105.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.27412-29105.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.27412-29105.Ar_EST_120301b_c2949%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17989%7Cgolgin.for.31210-32198.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.31210-32198.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.31210-32198.Ar_EST_120301b_c17989%7Cgolgin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16259%7Cpolyadenylate-binding.for.30808-32056.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.30808-32056.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.30808-32056.Ar_EST_120301b_c16259%7Cpolyadenylate-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2387%7Cacyl-.for.31890-33234.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.31890-33234.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.31890-33234.Ar_EST_120301b_c2387%7Cacyl-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13344%7Ctranscription.for.33215-34470.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33215-34470.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33215-34470.Ar_EST_120301b_rep_c13344%7Ctranscription.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4140%7Ctranscription.for.33145-34529.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33145-34529.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33145-34529.Ar_EST_120301b_rep_c4140%7Ctranscription.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18913%7Ctranscription.for.33177-34321.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33177-34321.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33177-34321.Ar_EST_120301b_rep_c18913%7Ctranscription.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8510%7Ctranscription.for.33317-34420.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33317-34420.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33317-34420.Ar_EST_120301b_rep_c8510%7Ctranscription.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15808%7Cnascent.for.33280-34495.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33280-34495.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33280-34495.Ar_EST_120301b_rep_c15808%7Cnascent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9214%7Ccoiled-coil.for.39058-40408.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.39058-40408.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.39058-40408.Ar_EST_120301b_c9214%7Ccoiled-coil.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19600%7Ccoiled-coil.for.38864-40377.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.38864-40377.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.38864-40377.Ar_EST_120301b_c19600%7Ccoiled-coil.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18901%7Cdna.for.39766-41076.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.39766-41076.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.39766-41076.Ar_EST_120301b_c18901%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3719%7Cddb1-.for.40713-42856.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.40713-42856.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.40713-42856.Ar_EST_120301b_c3719%7Cddb1-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18822%7Cauf_.for.43214-44648.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.43214-44648.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.43214-44648.Ar_EST_120301b_c18822%7Cauf_.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8190%7Ctilapia.for.43181-44516.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.43181-44516.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.43181-44516.Ar_EST_120301b_c8190%7Ctilapia.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13048%7Ccbs.for.45243-46586.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.45243-46586.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.45243-46586.Ar_EST_120301b_c13048%7Ccbs.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3085%7Cprotein.for.44775-46572.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.44775-46572.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.44775-46572.Ar_EST_120301b_c3085%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19474%7Ccbs.for.45854-47315.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.45854-47315.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.45854-47315.Ar_EST_120301b_c19474%7Ccbs.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3208%7Cdihydrolipoamide.for.46625-48544.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.46625-48544.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.46625-48544.Ar_EST_120301b_c3208%7Cdihydrolipoamide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1995%7Cperoxidase-like.for.52915-54181.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.52915-54181.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.52915-54181.Ar_EST_120301b_c1995%7Cperoxidase-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16093%7Csmall.for.53639-54991.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.53639-54991.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.53639-54991.Ar_EST_120301b_c16093%7Csmall.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10212%7Ccv03-normalized.for.57094-58040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.57094-58040.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.57094-58040.Ar_EST_120301b_c10212%7Ccv03-normalized.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11832%7Ctranscriptional.for.59175-60514.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.59175-60514.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.59175-60514.Ar_EST_120301b_c11832%7Ctranscriptional.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9386%7Caldehyde.for.60398-61477.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.60398-61477.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.60398-61477.Ar_EST_120301b_rep_c9386%7Caldehyde.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5837%7Cubiquitin-ribosomal.for.60397-61481.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.60397-61481.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.60397-61481.Ar_EST_120301b_rep_c5837%7Cubiquitin-ribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10610%7Carsenical.for.67383-68847.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.67383-68847.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.67383-68847.Ar_EST_120301b_c10610%7Carsenical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14571%7Cgrowth.for.81450-82610.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.81450-82610.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.81450-82610.Ar_EST_120301b_c14571%7Cgrowth.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8106%7Cglycosyl.for.87454-89144.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.87454-89144.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.87454-89144.Ar_EST_120301b_c8106%7Cglycosyl.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:25 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:22 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:19 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:22 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:34 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:23 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:29 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:28 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:30 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:26 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096446%7Cgb%7CEFC50074%2E1%7C.for.21443-22914.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.21443-22914.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.21443-22914.gi%7C284096446%7Cgb%7CEFC50074%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088239%7Cgb%7CEFC41904%2E1%7C.for.21428-22911.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.21428-22911.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.21428-22911.gi%7C284088239%7Cgb%7CEFC41904%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088728%7Cgb%7CEFC42390%2E1%7C.for.26581-27899.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.26581-27899.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.26581-27899.gi%7C284088728%7Cgb%7CEFC42390%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093986%7Cgb%7CEFC47622%2E1%7C.for.27297-29125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.27297-29125.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.27297-29125.gi%7C284093986%7Cgb%7CEFC47622%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083389%7Cgb%7CEFC37093%2E1%7C.for.40629-42867.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.40629-42867.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.40629-42867.gi%7C284083389%7Cgb%7CEFC37093%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088661%7Cgb%7CEFC42323%2E1%7C.for.42233-43607.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.42233-43607.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.42233-43607.gi%7C284088661%7Cgb%7CEFC42323%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084450%7Cgb%7CEFC38143%2E1%7C.for.44718-47219.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.44718-47219.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.44718-47219.gi%7C284084450%7Cgb%7CEFC38143%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087263%7Cgb%7CEFC40934%2E1%7C.for.44718-47219.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.44718-47219.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.44718-47219.gi%7C284087263%7Cgb%7CEFC40934%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094712%7Cgb%7CEFC48345%2E1%7C.for.46566-48732.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.46566-48732.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.46566-48732.gi%7C284094712%7Cgb%7CEFC48345%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C260677510%7Cgb%7CACX47992%2E1%7C.for.46575-48732.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.46575-48732.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.46575-48732.gi%7C260677510%7Cgb%7CACX47992%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C42795417%7Cgb%7CAAS46035%2E1%7C.for.49226-51258.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.49226-51258.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.49226-51258.gi%7C42795417%7Cgb%7CAAS46035%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092604%7Cgb%7CEFC46245%2E1%7C.for.48980-51279.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.48980-51279.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.48980-51279.gi%7C284092604%7Cgb%7CEFC46245%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091110%7Cgb%7CEFC44758%2E1%7C.for.54320-55659.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.54320-55659.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.54320-55659.gi%7C284091110%7Cgb%7CEFC44758%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087591%7Cgb%7CEFC41260%2E1%7C.for.61695-63855.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.61695-63855.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.61695-63855.gi%7C284087591%7Cgb%7CEFC41260%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090807%7Cgb%7CEFC44457%2E1%7C.for.61689-64185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.61689-64185.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.61689-64185.gi%7C284090807%7Cgb%7CEFC44457%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087960%7Cgb%7CEFC41626%2E1%7C.for.61695-64170.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.61695-64170.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.61695-64170.gi%7C284087960%7Cgb%7CEFC41626%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091709%7Cgb%7CEFC45354%2E1%7C.for.61689-64167.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.61689-64167.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.61689-64167.gi%7C284091709%7Cgb%7CEFC45354%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086829%7Cgb%7CEFC40503%2E1%7C.for.67184-69094.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.67184-69094.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.67184-69094.gi%7C284086829%7Cgb%7CEFC40503%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:10 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:10 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:22 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.2074-3158.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.2074-3158.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.2074-3158.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.27496-28925.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.27496-28925.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.27496-28925.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.31007-31856.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.31007-31856.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.31007-31856.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.33344-34338.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.33344-34338.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.33344-34338.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.39257-40208.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.39257-40208.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.39257-40208.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.40828-43407.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.40828-43407.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.40828-43407.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.44917-48532.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.44917-48532.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.44917-48532.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.53095-53981.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.53095-53981.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.53095-53981.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.67383-68894.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.67383-68894.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.67383-68894.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.81649-82410.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.81649-82410.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.81649-82410.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.1608-2246.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.1608-2246.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.1608-2246.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.2940-8342.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.2940-8342.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.2940-8342.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.11022-12898.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.11022-12898.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.11022-12898.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.12912-14308.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.12912-14308.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.12912-14308.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.16198-17982.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.16198-17982.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.16198-17982.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.21437-22714.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.21437-22714.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.21437-22714.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.25739-27800.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.25739-27800.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.25739-27800.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.32089-33069.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.32089-33069.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.32089-33069.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.39063-40876.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.39063-40876.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.39063-40876.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.43380-44448.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.43380-44448.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.43380-44448.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.49179-51079.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.49179-51079.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.49179-51079.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.53834-54791.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.53834-54791.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.53834-54791.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.57293-57840.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.57293-57840.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.57293-57840.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.59374-60314.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.59374-60314.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.59374-60314.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.61888-63967.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.61888-63967.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.61888-63967.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.87653-88944.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.87653-88944.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.87653-88944.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C18 Length: 97524 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C18.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C18.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig956%7Cist1.for.1393-3113.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.1393-3113.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.1393-3113.120301b_Contig956%7Cist1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c207%7Ccyclophilin.for.2372-3908.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.2372-3908.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.2372-3908.Ar_EST_120301b_c207%7Ccyclophilin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9680%7Csialate.for.2871-4336.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.2871-4336.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.2871-4336.Ar_EST_120301b_c9680%7Csialate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11909%7Cpredicted.for.10205-11801.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.10205-11801.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.10205-11801.Ar_EST_120301b_c11909%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17317%7Chypothetical.for.12208-13469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.12208-13469.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.12208-13469.Ar_EST_120301b_c17317%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1848%7Cserine.for.13277-15049.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.13277-15049.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.13277-15049.Ar_EST_120301b_c1848%7Cserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12449%7Cpeptidase.for.13848-14943.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.13848-14943.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.13848-14943.Ar_EST_120301b_c12449%7Cpeptidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14570%7Cserine.for.13254-14383.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.13254-14383.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.13254-14383.Ar_EST_120301b_c14570%7Cserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13149%7Csodium%3Asolute.for.14314-15606.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.14314-15606.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.14314-15606.Ar_EST_120301b_c13149%7Csodium%3Asolute.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13340%7Cjle00002651.for.17297-18594.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.17297-18594.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.17297-18594.Ar_EST_120301b_c13340%7Cjle00002651.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3112%7Cprotein.for.21072-23154.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.21072-23154.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.21072-23154.Ar_EST_120301b_c3112%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4384%7Casparaginyl-trna.for.23099-25361.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.23099-25361.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.23099-25361.Ar_EST_120301b_rep_c4384%7Casparaginyl-trna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6569%7Casparaginyl-trna.for.23655-25076.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.23655-25076.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.23655-25076.Ar_EST_120301b_rep_c6569%7Casparaginyl-trna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19437%7Cphosphatidylserine.for.25508-26638.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.25508-26638.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.25508-26638.Ar_EST_120301b_c19437%7Cphosphatidylserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7907%7Cphosphatidylserine.for.25067-26654.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.25067-26654.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.25067-26654.Ar_EST_120301b_c7907%7Cphosphatidylserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19136%7Cphosphatidylserine.for.25501-26838.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.25501-26838.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.25501-26838.Ar_EST_120301b_c19136%7Cphosphatidylserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12567%7Cbp914876.for.26854-28102.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.26854-28102.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.26854-28102.Ar_EST_120301b_c12567%7Cbp914876.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c474%7Crasgef.for.26750-28162.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.26750-28162.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.26750-28162.Ar_EST_120301b_c474%7Crasgef.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10283%7Crasgef.for.27456-29229.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.27456-29229.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.27456-29229.Ar_EST_120301b_c10283%7Crasgef.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1820%7Crasgef.for.28529-29887.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.28529-29887.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.28529-29887.Ar_EST_120301b_c1820%7Crasgef.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1034%7C6-phosphogluconate.for.31048-33315.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31048-33315.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31048-33315.120301b_Contig1034%7C6-phosphogluconate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14395%7Cacrasis.for.31744-32774.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31744-32774.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31744-32774.Ar_EST_120301b_c14395%7Cacrasis.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14855%7C6-phosphogluconate.for.31784-32819.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31784-32819.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31784-32819.Ar_EST_120301b_rep_c14855%7C6-phosphogluconate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig595%7Cprefoldin.for.32824-34284.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.32824-34284.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.32824-34284.120301b_Contig595%7Cprefoldin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9174%7Cig.for.38880-40636.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.38880-40636.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.38880-40636.Ar_EST_120301b_c9174%7Cig.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15067%7C6-phosphogluconolactonase.for.42321-43789.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.42321-43789.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.42321-43789.Ar_EST_120301b_c15067%7C6-phosphogluconolactonase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1603%7Coxidoreductase.for.43514-45581.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.43514-45581.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.43514-45581.Ar_EST_120301b_c1603%7Coxidoreductase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5690%7Czinc-binding.for.43646-45239.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.43646-45239.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.43646-45239.Ar_EST_120301b_rep_c5690%7Czinc-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10070%7Cprotein.for.44178-45537.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.44178-45537.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.44178-45537.Ar_EST_120301b_rep_c10070%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17326%7Cforkhead.for.47118-48572.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.47118-48572.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.47118-48572.Ar_EST_120301b_c17326%7Cforkhead.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18313%7Csh3-domain.for.48128-49291.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.48128-49291.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.48128-49291.Ar_EST_120301b_c18313%7Csh3-domain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15882%7Cprotein.for.48571-49859.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.48571-49859.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.48571-49859.Ar_EST_120301b_c15882%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9855%7Cunq88-.for.49262-51251.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.49262-51251.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.49262-51251.Ar_EST_120301b_rep_c9855%7Cunq88-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5404%7Cunq88-.for.49663-51470.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.49663-51470.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.49663-51470.Ar_EST_120301b_rep_c5404%7Cunq88-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14063%7Cvir_sct982_g01_jp7_4g1_002.for.51685-52680.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.51685-52680.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.51685-52680.Ar_EST_120301b_c14063%7Cvir_sct982_g01_jp7_4g1_002.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15610%7Cautophagy.for.52013-53304.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.52013-53304.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.52013-53304.Ar_EST_120301b_c15610%7Cautophagy.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9411%7C%28%2B%29-neomenthol.for.55320-56583.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.55320-56583.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.55320-56583.Ar_EST_120301b_c9411%7C%28%2B%29-neomenthol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11031%7Cdinucleoside.for.56198-57706.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.56198-57706.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.56198-57706.Ar_EST_120301b_c11031%7Cdinucleoside.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15310%7Cprotein.for.57832-59418.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.57832-59418.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.57832-59418.Ar_EST_120301b_c15310%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15%7Chypothetical.for.59021-60766.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.59021-60766.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.59021-60766.Ar_EST_120301b_c15%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11961%7Cabc.for.59276-60425.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.59276-60425.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.59276-60425.Ar_EST_120301b_rep_c11961%7Cabc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c342%7Ceukaryotic.for.60117-62820.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.60117-62820.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.60117-62820.Ar_EST_120301b_c342%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6325%7Ceukaryotic.for.60122-62377.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.60122-62377.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.60122-62377.Ar_EST_120301b_rep_c6325%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14038%7Ceukaryotic.for.60334-61979.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.60334-61979.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.60334-61979.Ar_EST_120301b_rep_c14038%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10838%7Cpredicted.for.63235-64205.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.63235-64205.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.63235-64205.Ar_EST_120301b_c10838%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15959%7Cnon-transporter.for.63573-64952.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.63573-64952.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.63573-64952.Ar_EST_120301b_c15959%7Cnon-transporter.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1121%7Cnitrate.for.65272-66840.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.65272-66840.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.65272-66840.Ar_EST_120301b_c1121%7Cnitrate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10306%7Cnitrate.for.64797-66084.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.64797-66084.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.64797-66084.Ar_EST_120301b_c10306%7Cnitrate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7785%7Cnitrate.for.66081-68119.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.66081-68119.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.66081-68119.Ar_EST_120301b_c7785%7Cnitrate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16968%7Cguanylate.for.70042-71135.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.70042-71135.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.70042-71135.Ar_EST_120301b_c16968%7Cguanylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3296%7Ctranscription.for.72211-73510.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.72211-73510.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.72211-73510.Ar_EST_120301b_c3296%7Ctranscription.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12094%7Cpredicted.for.72879-74208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.72879-74208.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.72879-74208.Ar_EST_120301b_c12094%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16226%7Cprotein.for.73862-75151.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.73862-75151.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.73862-75151.Ar_EST_120301b_c16226%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3632%7Creceptor-interacting.for.74428-76656.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.74428-76656.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.74428-76656.Ar_EST_120301b_c3632%7Creceptor-interacting.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4371%7Ctata-binding.for.79865-81399.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.79865-81399.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.79865-81399.Ar_EST_120301b_rep_c4371%7Ctata-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1339%7Cupf0577.for.81265-84505.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.81265-84505.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.81265-84505.120301b_Contig1339%7Cupf0577.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13539%7C---NA---.for.89697-91031.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.89697-91031.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.89697-91031.Ar_EST_120301b_c13539%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18466%7Cchaetosphaeridium.for.90173-91792.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.90173-91792.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.90173-91792.Ar_EST_120301b_c18466%7Cchaetosphaeridium.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17951%7Cclp.for.91022-92635.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.91022-92635.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.91022-92635.Ar_EST_120301b_c17951%7Cclp.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19464%7Cbf-sam-tir-like.for.96236-97524.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.96236-97524.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.96236-97524.Ar_EST_120301b_c19464%7Cbf-sam-tir-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1663%7Csterile.for.96052-97524.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.96052-97524.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.96052-97524.Ar_EST_120301b_c1663%7Csterile.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:16 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:10 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:22 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:12 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:17 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:17 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:22 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:20 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:14 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:14 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095252%7Cgb%7CEFC48883%2E1%7C.for.8997-10627.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.8997-10627.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.8997-10627.gi%7C284095252%7Cgb%7CEFC48883%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094339%7Cgb%7CEFC47973%2E1%7C.for.8937-10627.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.8937-10627.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.8937-10627.gi%7C284094339%7Cgb%7CEFC47973%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082802%7Cgb%7CEFC36513%2E1%7C.for.8949-10624.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.8949-10624.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.8949-10624.gi%7C284082802%7Cgb%7CEFC36513%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086622%7Cgb%7CEFC40297%2E1%7C.for.9150-10633.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.9150-10633.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.9150-10633.gi%7C284086622%7Cgb%7CEFC40297%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090173%7Cgb%7CEFC43826%2E1%7C.for.8919-10624.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.8919-10624.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.8919-10624.gi%7C284090173%7Cgb%7CEFC43826%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094933%7Cgb%7CEFC48565%2E1%7C.for.12954-15104.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.12954-15104.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.12954-15104.gi%7C284094933%7Cgb%7CEFC48565%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090440%7Cgb%7CEFC44092%2E1%7C.for.21395-23692.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.21395-23692.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.21395-23692.gi%7C284090440%7Cgb%7CEFC44092%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095286%7Cgb%7CEFC48917%2E1%7C.for.21485-23695.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.21485-23695.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.21485-23695.gi%7C284095286%7Cgb%7CEFC48917%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095446%7Cgb%7CEFC49077%2E1%7C.for.21485-23695.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.21485-23695.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.21485-23695.gi%7C284095446%7Cgb%7CEFC49077%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092248%7Cgb%7CEFC45891%2E1%7C.for.23192-25461.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.23192-25461.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.23192-25461.gi%7C284092248%7Cgb%7CEFC45891%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092767%7Cgb%7CEFC46408%2E1%7C.for.28190-30464.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.28190-30464.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.28190-30464.gi%7C284092767%7Cgb%7CEFC46408%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089590%7Cgb%7CEFC43247%2E1%7C.for.28208-30458.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.28208-30458.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.28208-30458.gi%7C284089590%7Cgb%7CEFC43247%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089589%7Cgb%7CEFC43246%2E1%7C.for.28208-30458.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.28208-30458.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.28208-30458.gi%7C284089589%7Cgb%7CEFC43246%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095088%7Cgb%7CEFC48720%2E1%7C.for.31080-33301.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31080-33301.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31080-33301.gi%7C284095088%7Cgb%7CEFC48720%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C18644664%7Cgb%7CAAL76318%2E1%7CAF394508_1.for.31116-33244.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31116-33244.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31116-33244.gi%7C18644664%7Cgb%7CAAL76318%2E1%7CAF394508_1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092926%7Cgb%7CEFC46566%2E1%7C.for.33923-35247.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.33923-35247.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.33923-35247.gi%7C284092926%7Cgb%7CEFC46566%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084413%7Cgb%7CEFC38106%2E1%7C.for.45120-46202.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.45120-46202.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.45120-46202.gi%7C284084413%7Cgb%7CEFC38106%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093891%7Cgb%7CEFC47527%2E1%7C.for.56356-57467.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.56356-57467.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.56356-57467.gi%7C284093891%7Cgb%7CEFC47527%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090358%7Cgb%7CEFC44010%2E1%7C.for.62297-65300.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.62297-65300.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.62297-65300.gi%7C284090358%7Cgb%7CEFC44010%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097074%7Cgb%7CEFC50701%2E1%7C.for.65494-66551.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.65494-66551.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.65494-66551.gi%7C284097074%7Cgb%7CEFC50701%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095485%7Cgb%7CEFC49116%2E1%7C.for.70054-71453.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.70054-71453.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.70054-71453.gi%7C284095485%7Cgb%7CEFC49116%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084029%7Cgb%7CEFC37726%2E1%7C.for.73767-75085.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.73767-75085.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.73767-75085.gi%7C284084029%7Cgb%7CEFC37726%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090329%7Cgb%7CEFC43981%2E1%7C.for.75286-76406.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.75286-76406.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.75286-76406.gi%7C284090329%7Cgb%7CEFC43981%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093550%7Cgb%7CEFC47187%2E1%7C.for.79969-81246.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.79969-81246.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.79969-81246.gi%7C284093550%7Cgb%7CEFC47187%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091548%7Cgb%7CEFC45194%2E1%7C.for.93315-94324.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.93315-94324.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.93315-94324.gi%7C284091548%7Cgb%7CEFC45194%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:14 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:12 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.1592-2913.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.1592-2913.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.1592-2913.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.9118-10433.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.9118-10433.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.9118-10433.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.12407-14904.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.12407-14904.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.12407-14904.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.17496-18394.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.17496-18394.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.17496-18394.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.21271-25261.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.21271-25261.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.21271-25261.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.25266-26638.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.25266-26638.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.25266-26638.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.26949-29687.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.26949-29687.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.26949-29687.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.31279-34084.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.31279-34084.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.31279-34084.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.34122-35047.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.34122-35047.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.34122-35047.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.39079-40436.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.39079-40436.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.39079-40436.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.42520-43589.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.42520-43589.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.42520-43589.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.45319-46002.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.45319-46002.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.45319-46002.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.47317-51270.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.47317-51270.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.47317-51270.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.58005-59218.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.58005-59218.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.58005-59218.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.59220-60582.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.59220-60582.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.59220-60582.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.73060-74951.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.73060-74951.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.73060-74951.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.81464-84305.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.81464-84305.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.81464-84305.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.3070-4136.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.3070-4136.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.3070-4136.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.10404-11601.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.10404-11601.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.10404-11601.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.14508-15406.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.14508-15406.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.14508-15406.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.43713-45381.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.43713-45381.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.43713-45381.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.52212-53104.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.52212-53104.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.52212-53104.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.55519-56383.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.55519-56383.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.55519-56383.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.56397-57506.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.56397-57506.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.56397-57506.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.60316-67919.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.60316-67919.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.60316-67919.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.70101-71253.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.70101-71253.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.70101-71253.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.74627-76479.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.74627-76479.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.74627-76479.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.80064-81199.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.80064-81199.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.80064-81199.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.89896-91592.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.89896-91592.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.89896-91592.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.93514-94124.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.93514-94124.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.93514-94124.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.96251-97449.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.96251-97449.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.96251-97449.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C19 Length: 217569 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:2 current j:0 j_size:2 current j:1 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C19.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C19.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:13 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:17 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:8 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:20 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:10 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:19 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:15 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:11 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:15 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:19 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18086%7Cpredicted.for.1806-3007.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.1806-3007.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.1806-3007.Ar_EST_120301b_c18086%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17569%7Cme1-0071p-a159-f12-.for.4726-5785.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.4726-5785.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.4726-5785.Ar_EST_120301b_c17569%7Cme1-0071p-a159-f12-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14143%7Cpredicted.for.5350-6841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.5350-6841.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.5350-6841.Ar_EST_120301b_c14143%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8188%7Chuntingtin.for.6217-7987.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.6217-7987.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.6217-7987.Ar_EST_120301b_c8188%7Chuntingtin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7996%7Cglyceraldehyde-3-phosphate.for.7708-8784.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.7708-8784.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.7708-8784.Ar_EST_120301b_rep_c7996%7Cglyceraldehyde-3-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5073%7Cpra1.for.8169-9759.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.8169-9759.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.8169-9759.Ar_EST_120301b_rep_c5073%7Cpra1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5868%7Cpra1.for.8338-9754.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.8338-9754.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.8338-9754.Ar_EST_120301b_rep_c5868%7Cpra1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c971%7Cprotein.for.10089-11433.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.10089-11433.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.10089-11433.Ar_EST_120301b_c971%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17756%7Cdna.for.14180-15515.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.14180-15515.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.14180-15515.Ar_EST_120301b_c17756%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6314%7Cbi146m05.for.20010-21370.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.20010-21370.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.20010-21370.Ar_EST_120301b_rep_c6314%7Cbi146m05.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18921%7C---NA---.for.20166-21202.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.20166-21202.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.20166-21202.Ar_EST_120301b_rep_c18921%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19041%7C---NA---.for.20072-21110.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.20072-21110.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.20072-21110.Ar_EST_120301b_rep_c19041%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1735%7Cdna.for.19510-21674.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.19510-21674.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.19510-21674.Ar_EST_120301b_c1735%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13965%7Ctryptophan.for.20308-21500.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.20308-21500.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.20308-21500.Ar_EST_120301b_rep_c13965%7Ctryptophan.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4463%7C---NA---.for.21337-22786.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.21337-22786.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.21337-22786.Ar_EST_120301b_rep_c4463%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11964%7Chistone.for.26141-27552.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.26141-27552.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.26141-27552.Ar_EST_120301b_c11964%7Chistone.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14853%7Cpredicted.for.25824-26912.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.25824-26912.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.25824-26912.Ar_EST_120301b_c14853%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c725%7Cprotein.for.25790-27759.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.25790-27759.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.25790-27759.Ar_EST_120301b_c725%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14261%7C---NA---.for.27658-28561.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.27658-28561.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.27658-28561.Ar_EST_120301b_c14261%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11200%7Cperoxisome.for.28574-30060.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.28574-30060.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.28574-30060.Ar_EST_120301b_c11200%7Cperoxisome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16384%7C---NA---.for.28150-29386.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.28150-29386.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.28150-29386.Ar_EST_120301b_c16384%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16810%7Cperoxisomal.for.29540-30925.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.29540-30925.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.29540-30925.Ar_EST_120301b_c16810%7Cperoxisomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1284%7Cshwachman-bodian-diamond.for.30724-31913.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.30724-31913.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.30724-31913.Ar_EST_120301b_c1284%7Cshwachman-bodian-diamond.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2405%7Crna-associated.for.30286-31904.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.30286-31904.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.30286-31904.Ar_EST_120301b_c2405%7Crna-associated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7523%7Cshwachman-bodian-diamond.for.30411-31683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.30411-31683.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.30411-31683.Ar_EST_120301b_rep_c7523%7Cshwachman-bodian-diamond.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c858%7Csuccinate-.for.35387-37427.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.35387-37427.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.35387-37427.Ar_EST_120301b_c858%7Csuccinate-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14975%7Cgc-rich.for.36799-38057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.36799-38057.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.36799-38057.Ar_EST_120301b_c14975%7Cgc-rich.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17619%7Cgc-rich.for.37259-38400.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.37259-38400.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.37259-38400.Ar_EST_120301b_c17619%7Cgc-rich.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11908%7Cwd40.for.37236-38338.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.37236-38338.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.37236-38338.Ar_EST_120301b_c11908%7Cwd40.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9665%7Ctyrosyl-trna.for.40531-41818.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.40531-41818.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.40531-41818.Ar_EST_120301b_c9665%7Ctyrosyl-trna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15790%7Cadenylyltransferase.for.41871-43101.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.41871-43101.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.41871-43101.Ar_EST_120301b_c15790%7Cadenylyltransferase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18381%7C2-methylisocitrate.for.43546-44773.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.43546-44773.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.43546-44773.Ar_EST_120301b_c18381%7C2-methylisocitrate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1141%7Cmethylisocitrate.for.43547-45200.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.43547-45200.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.43547-45200.Ar_EST_120301b_c1141%7Cmethylisocitrate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5326%7Ccazn.for.46335-47659.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.46335-47659.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.46335-47659.Ar_EST_120301b_rep_c5326%7Ccazn.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16278%7Chh_ystg_54f02_t3.for.48455-49896.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.48455-49896.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.48455-49896.Ar_EST_120301b_c16278%7Chh_ystg_54f02_t3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3313%7Cdc896819.for.47270-49327.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.47270-49327.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.47270-49327.Ar_EST_120301b_c3313%7Cdc896819.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15481%7Cnadh-dependent.for.55949-56970.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.55949-56970.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.55949-56970.Ar_EST_120301b_c15481%7Cnadh-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6369%7Ccathepsin.for.56950-58951.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.56950-58951.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.56950-58951.Ar_EST_120301b_rep_c6369%7Ccathepsin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6703%7Ccathepsin.for.57416-58951.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57416-58951.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57416-58951.Ar_EST_120301b_rep_c6703%7Ccathepsin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5635%7Ccathepsin.for.57081-58956.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57081-58956.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57081-58956.Ar_EST_120301b_rep_c5635%7Ccathepsin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15567%7Ccathepsin.for.57591-58542.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57591-58542.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57591-58542.Ar_EST_120301b_rep_c15567%7Ccathepsin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18626%7Cschistosoma.for.57553-58871.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57553-58871.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57553-58871.Ar_EST_120301b_rep_c18626%7Cschistosoma.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4114%7Ccathepsin.for.57073-58967.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57073-58967.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57073-58967.Ar_EST_120301b_rep_c4114%7Ccathepsin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12361%7Cdna.for.58245-59385.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.58245-59385.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.58245-59385.Ar_EST_120301b_c12361%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11199%7Centh.for.58624-60297.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.58624-60297.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.58624-60297.Ar_EST_120301b_c11199%7Centh.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2376%7Cregulator.for.60776-62236.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.60776-62236.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.60776-62236.Ar_EST_120301b_c2376%7Cregulator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c291%7Cregulator.for.60402-63026.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.60402-63026.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.60402-63026.Ar_EST_120301b_c291%7Cregulator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14264%7Cdpo07-eadult-whole-untreated-unnorm.for.68959-70300.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.68959-70300.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.68959-70300.Ar_EST_120301b_c14264%7Cdpo07-eadult-whole-untreated-unnorm.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1316%7Cpeptide.for.70993-72991.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.70993-72991.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.70993-72991.Ar_EST_120301b_c1316%7Cpeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8577%7Cpeptide.for.70981-72404.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.70981-72404.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.70981-72404.Ar_EST_120301b_c8577%7Cpeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14052%7Cadenosylhomocysteinase.for.74276-75452.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.74276-75452.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.74276-75452.Ar_EST_120301b_rep_c14052%7Cadenosylhomocysteinase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4278%7Cdihydrolipoamide.for.73633-75728.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.73633-75728.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.73633-75728.Ar_EST_120301b_rep_c4278%7Cdihydrolipoamide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12796%7Csestrin-like.for.75023-76366.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.75023-76366.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.75023-76366.Ar_EST_120301b_c12796%7Csestrin-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14013%7Cenvelope.for.75631-76655.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.75631-76655.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.75631-76655.Ar_EST_120301b_c14013%7Cenvelope.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c294%7Csestrin-like.for.75776-77286.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.75776-77286.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.75776-77286.Ar_EST_120301b_c294%7Csestrin-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10956%7C---NA---.for.77886-79247.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.77886-79247.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.77886-79247.Ar_EST_120301b_c10956%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11463%7Chypothetical.for.80337-81687.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.80337-81687.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.80337-81687.Ar_EST_120301b_c11463%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9893%7Cpq-loop.for.81376-82839.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.81376-82839.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.81376-82839.Ar_EST_120301b_c9893%7Cpq-loop.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16844%7Chypothetical.for.93623-95050.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.93623-95050.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.93623-95050.Ar_EST_120301b_c16844%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6574%7Cprotein.for.94548-96085.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.94548-96085.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.94548-96085.Ar_EST_120301b_rep_c6574%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12988%7Cmembrane.for.96666-97923.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.96666-97923.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.96666-97923.Ar_EST_120301b_c12988%7Cmembrane.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1227%7Clysophospholipid.for.96104-98415.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.96104-98415.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.96104-98415.Ar_EST_120301b_c1227%7Clysophospholipid.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15198%7Ct-complex.for.96435-97629.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.96435-97629.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.96435-97629.Ar_EST_120301b_rep_c15198%7Ct-complex.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c821%7Csco.for.98203-99525.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.98203-99525.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.98203-99525.Ar_EST_120301b_c821%7Csco.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16830%7C---NA---.for.101216-102554.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.101216-102554.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.101216-102554.Ar_EST_120301b_c16830%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c765%7Cstart.for.100984-102358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.100984-102358.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.100984-102358.Ar_EST_120301b_c765%7Cstart.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1011%7Cactin.for.102913-104263.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102913-104263.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102913-104263.120301b_Contig1011%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7459%7Cubiquitin.for.102549-103922.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102549-103922.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102549-103922.Ar_EST_120301b_rep_c7459%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7281%7Cactin.for.102559-103719.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102559-103719.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102559-103719.Ar_EST_120301b_rep_c7281%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19974%7Cbeta.for.102516-103491.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102516-103491.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102516-103491.Ar_EST_120301b_rep_c19974%7Cbeta.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16282%7Cfq664523.for.102847-103750.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102847-103750.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102847-103750.Ar_EST_120301b_c16282%7Cfq664523.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig782%7Cactin.for.102545-104472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104472.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104472.120301b_Contig782%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4045%7Cactin.for.102541-103983.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102541-103983.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102541-103983.Ar_EST_120301b_rep_c4045%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10438%7Cactin.for.103088-104291.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103088-104291.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103088-104291.Ar_EST_120301b_c10438%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7317%7Cbeta.for.102533-103683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102533-103683.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102533-103683.Ar_EST_120301b_rep_c7317%7Cbeta.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6795%7Cbeta.for.102544-103668.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102544-103668.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102544-103668.Ar_EST_120301b_rep_c6795%7Cbeta.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig573%7Cactin.for.102881-104288.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102881-104288.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102881-104288.120301b_Contig573%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5842%7Cactin.for.102638-104158.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102638-104158.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102638-104158.Ar_EST_120301b_rep_c5842%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1143%7Cactin.for.102554-103861.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-103861.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-103861.120301b_Contig1143%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7283%7Cbeta-actin.for.102622-103856.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102622-103856.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102622-103856.Ar_EST_120301b_rep_c7283%7Cbeta-actin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20286%7Cactin.for.103194-104293.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103194-104293.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103194-104293.Ar_EST_120301b_rep_c20286%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6785%7Cactin.for.103351-104481.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103351-104481.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103351-104481.Ar_EST_120301b_rep_c6785%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8932%7Cactin.for.102900-104033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102900-104033.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102900-104033.Ar_EST_120301b_c8932%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6177%7Cactin.for.102541-104472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102541-104472.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102541-104472.Ar_EST_120301b_rep_c6177%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1364%7Cactin.for.103165-104442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103165-104442.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103165-104442.120301b_Contig1364%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10740%7Cactin.for.102897-104034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102897-104034.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102897-104034.Ar_EST_120301b_rep_c10740%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7052%7Cactin.for.102980-104144.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102980-104144.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102980-104144.Ar_EST_120301b_rep_c7052%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16711%7Cactin-like.for.103455-104490.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103455-104490.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103455-104490.Ar_EST_120301b_rep_c16711%7Cactin-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5397%7Cbeta.for.102544-103526.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102544-103526.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102544-103526.Ar_EST_120301b_rep_c5397%7Cbeta.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4024%7Cactin.for.102516-104514.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102516-104514.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102516-104514.Ar_EST_120301b_rep_c4024%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6690%7Cactin.for.103188-104366.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103188-104366.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103188-104366.Ar_EST_120301b_rep_c6690%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7250%7Cbeta-actin.for.102623-103775.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102623-103775.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102623-103775.Ar_EST_120301b_rep_c7250%7Cbeta-actin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7417%7Cactin.for.102573-103644.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102573-103644.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102573-103644.Ar_EST_120301b_rep_c7417%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4576%7Cactin.for.102713-104514.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102713-104514.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102713-104514.Ar_EST_120301b_rep_c4576%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6565%7Cactin.for.103281-104486.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103281-104486.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103281-104486.Ar_EST_120301b_rep_c6565%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11279%7Cactin.for.103111-104199.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103111-104199.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103111-104199.Ar_EST_120301b_c11279%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1814%7Cactin.for.102544-104002.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102544-104002.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102544-104002.Ar_EST_120301b_c1814%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7237%7Cubiquitin.for.102545-103765.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-103765.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-103765.Ar_EST_120301b_rep_c7237%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6092%7Cbeta.for.102545-103710.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-103710.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-103710.Ar_EST_120301b_rep_c6092%7Cbeta.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20475%7Cbeta.for.102545-103679.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-103679.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-103679.Ar_EST_120301b_rep_c20475%7Cbeta.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6612%7Cbeta-actin.for.102769-103850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102769-103850.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102769-103850.Ar_EST_120301b_rep_c6612%7Cbeta-actin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4013%7Cactin.for.102545-104438.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104438.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104438.Ar_EST_120301b_rep_c4013%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7649%7Cactin.for.102933-104177.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102933-104177.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102933-104177.Ar_EST_120301b_rep_c7649%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5328%7Cactin.for.102896-103925.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102896-103925.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102896-103925.Ar_EST_120301b_rep_c5328%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig519%7Cactin.for.102671-104472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102671-104472.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102671-104472.120301b_Contig519%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7261%7Cactin.for.102569-103763.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102569-103763.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102569-103763.Ar_EST_120301b_rep_c7261%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7574%7Cactin.for.102927-104188.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102927-104188.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102927-104188.Ar_EST_120301b_rep_c7574%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14154%7Cactin.for.103272-104375.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103272-104375.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103272-104375.Ar_EST_120301b_rep_c14154%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16255%7Cactin.for.103218-104391.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103218-104391.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103218-104391.Ar_EST_120301b_rep_c16255%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20026%7Cactin.for.103107-104141.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103107-104141.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103107-104141.Ar_EST_120301b_c20026%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5899%7Cactin.for.102883-103950.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102883-103950.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102883-103950.Ar_EST_120301b_rep_c5899%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5955%7Cbeta-actin.for.103505-104472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103505-104472.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103505-104472.Ar_EST_120301b_rep_c5955%7Cbeta-actin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7229%7CActin.for.102557-103487.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102557-103487.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102557-103487.Ar_EST_120301b_rep_c7229%7CActin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6804%7Cprotein.for.105841-107575.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105841-107575.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105841-107575.Ar_EST_120301b_rep_c6804%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15007%7Czinc.for.108314-109528.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.108314-109528.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.108314-109528.Ar_EST_120301b_c15007%7Czinc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13370%7Cau_cv_est_008a_b02.for.109246-110294.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.109246-110294.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.109246-110294.Ar_EST_120301b_c13370%7Cau_cv_est_008a_b02.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8594%7C---NA---.for.111592-113431.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.111592-113431.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.111592-113431.Ar_EST_120301b_c8594%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16528%7C---NA---.for.113739-114926.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.113739-114926.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.113739-114926.Ar_EST_120301b_c16528%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8764%7Cpseudouridine.for.127906-129892.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.127906-129892.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.127906-129892.Ar_EST_120301b_c8764%7Cpseudouridine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11591%7Chistone.for.129444-130461.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.129444-130461.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.129444-130461.Ar_EST_120301b_rep_c11591%7Chistone.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2442%7Chistone.for.129143-130465.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.129143-130465.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.129143-130465.Ar_EST_120301b_c2442%7Chistone.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11107%7Ckynureninase.for.132897-134505.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.132897-134505.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.132897-134505.Ar_EST_120301b_c11107%7Ckynureninase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1312%7Ckynureninase.for.133454-134779.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.133454-134779.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.133454-134779.Ar_EST_120301b_c1312%7Ckynureninase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18501%7Cepoxide.for.138372-139795.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.138372-139795.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.138372-139795.Ar_EST_120301b_c18501%7Cepoxide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6221%7Cvon.for.139858-141383.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139858-141383.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139858-141383.Ar_EST_120301b_rep_c6221%7Cvon.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6322%7Cvon.for.139293-140703.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139293-140703.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139293-140703.Ar_EST_120301b_rep_c6322%7Cvon.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5569%7Cinter-alpha-trypsin.for.139281-141395.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139281-141395.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139281-141395.Ar_EST_120301b_rep_c5569%7Cinter-alpha-trypsin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6355%7Cgdp-l-fucose.for.140881-142708.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.140881-142708.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.140881-142708.Ar_EST_120301b_rep_c6355%7Cgdp-l-fucose.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19416%7Cgdp-l-fucose.for.141007-142074.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.141007-142074.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.141007-142074.Ar_EST_120301b_rep_c19416%7Cgdp-l-fucose.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4330%7Cgdp-l-fucose.for.141132-142705.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.141132-142705.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.141132-142705.Ar_EST_120301b_rep_c4330%7Cgdp-l-fucose.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15292%7Cgdp-l-fucose.for.141386-142656.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.141386-142656.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.141386-142656.Ar_EST_120301b_rep_c15292%7Cgdp-l-fucose.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8424%7Ctissue.for.140951-142356.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.140951-142356.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.140951-142356.Ar_EST_120301b_rep_c8424%7Ctissue.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12996%7Cgdp-l-fucose.for.141224-142130.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.141224-142130.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.141224-142130.Ar_EST_120301b_rep_c12996%7Cgdp-l-fucose.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14212%7Caminoglycoside.for.142125-143497.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.142125-143497.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.142125-143497.Ar_EST_120301b_c14212%7Caminoglycoside.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17261%7Cthermophilic.for.143186-144667.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.143186-144667.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.143186-144667.Ar_EST_120301b_c17261%7Cthermophilic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16136%7Cprobable.for.144243-145472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.144243-145472.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.144243-145472.Ar_EST_120301b_c16136%7Cprobable.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9764%7Cregulator.for.151181-152872.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.151181-152872.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.151181-152872.Ar_EST_120301b_rep_c9764%7Cregulator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7187%7Cregulator.for.151327-153118.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.151327-153118.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.151327-153118.Ar_EST_120301b_rep_c7187%7Cregulator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c999%7Creplication.for.161477-162850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.161477-162850.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.161477-162850.Ar_EST_120301b_c999%7Creplication.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1128%7Csoluble.for.164149-165867.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.164149-165867.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.164149-165867.120301b_Contig1128%7Csoluble.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8629%7Cgq028.for.166297-167880.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.166297-167880.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.166297-167880.Ar_EST_120301b_c8629%7Cgq028.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6086%7C60s.for.167832-169064.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167832-169064.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167832-169064.Ar_EST_120301b_rep_c6086%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig123%7C60s.for.167786-169266.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167786-169266.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167786-169266.120301b_Contig123%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18572%7Cribosomal.for.168035-169064.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.168035-169064.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.168035-169064.Ar_EST_120301b_rep_c18572%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6911%7Credoxin.for.167155-168586.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167155-168586.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167155-168586.Ar_EST_120301b_rep_c6911%7Credoxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20338%7C60s.for.167804-168909.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167804-168909.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167804-168909.Ar_EST_120301b_rep_c20338%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20172%7C60s.for.167803-169031.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167803-169031.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167803-169031.Ar_EST_120301b_rep_c20172%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11878%7C---NA---.for.168799-169695.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.168799-169695.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.168799-169695.Ar_EST_120301b_c11878%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c592%7Cglutathione-dependent.for.172691-174063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.172691-174063.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.172691-174063.Ar_EST_120301b_c592%7Cglutathione-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15602%7Cwd-40.for.174212-175463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.174212-175463.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.174212-175463.Ar_EST_120301b_c15602%7Cwd-40.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5247%7Ccawy.for.175255-177616.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.175255-177616.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.175255-177616.Ar_EST_120301b_rep_c5247%7Ccawy.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19643%7Cmetc577tf.for.175646-176943.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.175646-176943.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.175646-176943.Ar_EST_120301b_rep_c19643%7Cmetc577tf.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5668%7Cbeta-propeller.for.175225-177450.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.175225-177450.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.175225-177450.Ar_EST_120301b_rep_c5668%7Cbeta-propeller.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10167%7Chypothetical.for.175909-177339.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.175909-177339.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.175909-177339.Ar_EST_120301b_rep_c10167%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18312%7Cpuncp79tv.for.177167-178457.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.177167-178457.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.177167-178457.Ar_EST_120301b_c18312%7Cpuncp79tv.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3490%7Ccytochrome.for.178105-180411.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.178105-180411.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.178105-180411.Ar_EST_120301b_c3490%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig438%7Csilent.for.180034-181671.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.180034-181671.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.180034-181671.120301b_Contig438%7Csilent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13291%7Cmagnesium.for.181514-182950.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.181514-182950.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.181514-182950.Ar_EST_120301b_c13291%7Cmagnesium.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14685%7Ccfbx.for.182149-183291.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.182149-183291.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.182149-183291.Ar_EST_120301b_c14685%7Ccfbx.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6756%7Ccharged.for.184404-186003.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.184404-186003.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.184404-186003.Ar_EST_120301b_rep_c6756%7Ccharged.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19315%7Csperm.for.184412-185594.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.184412-185594.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.184412-185594.Ar_EST_120301b_rep_c19315%7Csperm.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8432%7Cprotein.for.186019-187330.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.186019-187330.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.186019-187330.Ar_EST_120301b_c8432%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9026%7Cadenylate.for.191652-193243.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.191652-193243.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.191652-193243.Ar_EST_120301b_c9026%7Cadenylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig232%7Cprotein.for.195299-197003.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.195299-197003.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.195299-197003.120301b_Contig232%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12355%7Cachain.for.198160-199841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.198160-199841.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.198160-199841.Ar_EST_120301b_c12355%7Cachain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11421%7Ccbpn%3A.for.199372-200960.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.199372-200960.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.199372-200960.Ar_EST_120301b_c11421%7Ccbpn%3A.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12326%7Cplasmid.for.201299-202617.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.201299-202617.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.201299-202617.Ar_EST_120301b_c12326%7Cplasmid.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9661%7Cd-lactate.for.202113-203560.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.202113-203560.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.202113-203560.Ar_EST_120301b_c9661%7Cd-lactate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12252%7Cd-2-hydroxyglutarate.for.202849-204171.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.202849-204171.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.202849-204171.Ar_EST_120301b_c12252%7Cd-2-hydroxyglutarate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig82%7Cprofilin.for.205645-207160.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.205645-207160.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.205645-207160.120301b_Contig82%7Cprofilin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19204%7Ctachyzoite.for.206003-207254.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.206003-207254.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.206003-207254.Ar_EST_120301b_c19204%7Ctachyzoite.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18472%7C0298140.for.214230-215255.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.214230-215255.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.214230-215255.Ar_EST_120301b_c18472%7C0298140.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 20 ...processing 1 of 20 ...processing 2 of 20 ...processing 3 of 20 ...processing 4 of 20 ...processing 5 of 20 ...processing 6 of 20 ...processing 7 of 20 ...processing 8 of 20 ...processing 9 of 20 ...processing 10 of 20 ...processing 11 of 20 ...processing 12 of 20 ...processing 13 of 20 ...processing 14 of 20 ...processing 15 of 20 ...processing 16 of 20 ...processing 17 of 20 ...processing 18 of 20 ...processing 19 of 20 ...trimming the rest total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:108 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:95 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:92 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:111 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:103 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:97 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:95 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:105 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:98 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:90 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082602%7Cgb%7CEFC36317%2E1%7C.for.12704-14707.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.12704-14707.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.12704-14707.gi%7C284082602%7Cgb%7CEFC36317%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091570%7Cgb%7CEFC45216%2E1%7C.for.11917-15472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.11917-15472.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.11917-15472.gi%7C284091570%7Cgb%7CEFC45216%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091249%7Cgb%7CEFC44897%2E1%7C.for.15448-16409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.15448-16409.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.15448-16409.gi%7C284091249%7Cgb%7CEFC44897%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094467%7Cgb%7CEFC48101%2E1%7C.for.17077-18694.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.17077-18694.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.17077-18694.gi%7C284094467%7Cgb%7CEFC48101%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084713%7Cgb%7CEFC38403%2E1%7C.for.19098-20221.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.19098-20221.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.19098-20221.gi%7C284084713%7Cgb%7CEFC38403%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083098%7Cgb%7CEFC36805%2E1%7C.for.18813-20302.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.18813-20302.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.18813-20302.gi%7C284083098%7Cgb%7CEFC36805%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089888%7Cgb%7CEFC43543%2E1%7C.for.25893-27843.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.25893-27843.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.25893-27843.gi%7C284089888%7Cgb%7CEFC43543%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089773%7Cgb%7CEFC43428%2E1%7C.for.26241-27855.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.26241-27855.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.26241-27855.gi%7C284089773%7Cgb%7CEFC43428%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097150%7Cgb%7CEFC50777%2E1%7C.for.29329-30989.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.29329-30989.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.29329-30989.gi%7C284097150%7Cgb%7CEFC50777%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092355%7Cgb%7CEFC45997%2E1%7C.for.29371-30977.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.29371-30977.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.29371-30977.gi%7C284092355%7Cgb%7CEFC45997%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096259%7Cgb%7CEFC49887%2E1%7C.for.29368-30926.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.29368-30926.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.29368-30926.gi%7C284096259%7Cgb%7CEFC49887%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089294%7Cgb%7CEFC42952%2E1%7C.for.30300-31853.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.30300-31853.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.30300-31853.gi%7C284089294%7Cgb%7CEFC42952%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096906%7Cgb%7CEFC50533%2E1%7C.for.31243-32294.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.31243-32294.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.31243-32294.gi%7C284096906%7Cgb%7CEFC50533%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080983%7Cgb%7CEFC35253%2E1%7C.for.32408-33930.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32408-33930.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32408-33930.gi%7C284080983%7Cgb%7CEFC35253%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083648%7Cgb%7CEFC37349%2E1%7C.for.32417-33987.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32417-33987.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32417-33987.gi%7C284083648%7Cgb%7CEFC37349%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096419%7Cgb%7CEFC50047%2E1%7C.for.32417-33759.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32417-33759.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32417-33759.gi%7C284096419%7Cgb%7CEFC50047%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084263%7Cgb%7CEFC37957%2E1%7C.for.32417-33741.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32417-33741.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32417-33741.gi%7C284084263%7Cgb%7CEFC37957%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086669%7Cgb%7CEFC40344%2E1%7C.for.32417-33459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32417-33459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32417-33459.gi%7C284086669%7Cgb%7CEFC40344%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092998%7Cgb%7CEFC46638%2E1%7C.for.35392-37509.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.35392-37509.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.35392-37509.gi%7C284092998%7Cgb%7CEFC46638%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082062%7Cgb%7CEFC35848%2E1%7C.for.35398-37130.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.35398-37130.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.35398-37130.gi%7C284082062%7Cgb%7CEFC35848%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087626%7Cgb%7CEFC41294%2E1%7C.for.35461-37506.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.35461-37506.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.35461-37506.gi%7C284087626%7Cgb%7CEFC41294%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089694%7Cgb%7CEFC43350%2E1%7C.for.41200-43226.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.41200-43226.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.41200-43226.gi%7C284089694%7Cgb%7CEFC43350%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089398%7Cgb%7CEFC43056%2E1%7C.for.43509-45184.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.43509-45184.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.43509-45184.gi%7C284089398%7Cgb%7CEFC43056%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094642%7Cgb%7CEFC48275%2E1%7C.for.49328-51487.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.49328-51487.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.49328-51487.gi%7C284094642%7Cgb%7CEFC48275%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083741%7Cgb%7CEFC37441%2E1%7C.for.50946-52528.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.50946-52528.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.50946-52528.gi%7C284083741%7Cgb%7CEFC37441%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089583%7Cgb%7CEFC43240%2E1%7C.for.53473-54613.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.53473-54613.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.53473-54613.gi%7C284089583%7Cgb%7CEFC43240%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095256%7Cgb%7CEFC48887%2E1%7C.for.54305-55518.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.54305-55518.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.54305-55518.gi%7C284095256%7Cgb%7CEFC48887%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081631%7Cgb%7CEFC35564%2E1%7C.for.55682-57063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.55682-57063.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.55682-57063.gi%7C284081631%7Cgb%7CEFC35564%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092518%7Cgb%7CEFC46160%2E1%7C.for.57083-58569.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57083-58569.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57083-58569.gi%7C284092518%7Cgb%7CEFC46160%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080970%7Cgb%7CEFC35250%2E1%7C.for.57107-58131.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57107-58131.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57107-58131.gi%7C284080970%7Cgb%7CEFC35250%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092387%7Cgb%7CEFC46029%2E1%7C.for.57110-58599.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57110-58599.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57110-58599.gi%7C284092387%7Cgb%7CEFC46029%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091231%7Cgb%7CEFC44879%2E1%7C.for.57122-58599.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57122-58599.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57122-58599.gi%7C284091231%7Cgb%7CEFC44879%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096309%7Cgb%7CEFC49937%2E1%7C.for.57119-58602.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57119-58602.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57119-58602.gi%7C284096309%7Cgb%7CEFC49937%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086017%7Cgb%7CEFC39696%2E1%7C.for.57122-58626.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57122-58626.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57122-58626.gi%7C284086017%7Cgb%7CEFC39696%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092312%7Cgb%7CEFC45955%2E1%7C.for.66552-68221.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.66552-68221.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.66552-68221.gi%7C284092312%7Cgb%7CEFC45955%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095663%7Cgb%7CEFC49293%2E1%7C.for.73646-75543.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.73646-75543.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.73646-75543.gi%7C284095663%7Cgb%7CEFC49293%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089244%7Cgb%7CEFC42903%2E1%7C.for.75047-77273.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.75047-77273.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.75047-77273.gi%7C284089244%7Cgb%7CEFC42903%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088914%7Cgb%7CEFC42574%2E1%7C.for.81456-82906.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.81456-82906.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.81456-82906.gi%7C284088914%7Cgb%7CEFC42574%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088237%7Cgb%7CEFC41902%2E1%7C.for.87474-88462.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87474-88462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87474-88462.gi%7C284088237%7Cgb%7CEFC41902%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088639%7Cgb%7CEFC42301%2E1%7C.for.87465-88486.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87465-88486.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87465-88486.gi%7C284088639%7Cgb%7CEFC42301%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086665%7Cgb%7CEFC40340%2E1%7C.for.87405-88381.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87405-88381.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87405-88381.gi%7C284086665%7Cgb%7CEFC40340%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086663%7Cgb%7CEFC40338%2E1%7C.for.87462-88381.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87462-88381.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87462-88381.gi%7C284086663%7Cgb%7CEFC40338%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087769%7Cgb%7CEFC41436%2E1%7C.for.87438-88381.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87438-88381.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87438-88381.gi%7C284087769%7Cgb%7CEFC41436%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095431%7Cgb%7CEFC49062%2E1%7C.for.94523-95901.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.94523-95901.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.94523-95901.gi%7C284095431%7Cgb%7CEFC49062%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087201%7Cgb%7CEFC40872%2E1%7C.for.97862-99309.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.97862-99309.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.97862-99309.gi%7C284087201%7Cgb%7CEFC40872%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088832%7Cgb%7CEFC42493%2E1%7C.for.102590-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102590-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102590-104469.gi%7C284088832%7Cgb%7CEFC42493%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089566%7Cgb%7CEFC43223%2E1%7C.for.102560-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104469.gi%7C284089566%7Cgb%7CEFC43223%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091175%7Cgb%7CEFC44823%2E1%7C.for.102545-104466.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104466.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104466.gi%7C284091175%7Cgb%7CEFC44823%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086467%7Cgb%7CEFC40143%2E1%7C.for.102557-104463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102557-104463.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102557-104463.gi%7C284086467%7Cgb%7CEFC40143%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091949%7Cgb%7CEFC45593%2E1%7C.for.102563-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104469.gi%7C284091949%7Cgb%7CEFC45593%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093022%7Cgb%7CEFC46662%2E1%7C.for.102551-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.gi%7C284093022%7Cgb%7CEFC46662%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084913%7Cgb%7CEFC38601%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284084913%7Cgb%7CEFC38601%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091907%7Cgb%7CEFC45551%2E1%7C.for.102551-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.gi%7C284091907%7Cgb%7CEFC45551%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081216%7Cgb%7CEFC35341%2E1%7C.for.102545-103866.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-103866.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-103866.gi%7C284081216%7Cgb%7CEFC35341%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094255%7Cgb%7CEFC47890%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284094255%7Cgb%7CEFC47890%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085698%7Cgb%7CEFC39380%2E1%7C.for.102551-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.gi%7C284085698%7Cgb%7CEFC39380%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085910%7Cgb%7CEFC39590%2E1%7C.for.102554-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-104469.gi%7C284085910%7Cgb%7CEFC39590%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085859%7Cgb%7CEFC39540%2E1%7C.for.102560-104466.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104466.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104466.gi%7C284085859%7Cgb%7CEFC39540%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082408%7Cgb%7CEFC36130%2E1%7C.for.102539-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102539-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102539-104469.gi%7C284082408%7Cgb%7CEFC36130%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084215%7Cgb%7CEFC37910%2E1%7C.for.102563-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104469.gi%7C284084215%7Cgb%7CEFC37910%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082818%7Cgb%7CEFC36529%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284082818%7Cgb%7CEFC36529%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092206%7Cgb%7CEFC45849%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284092206%7Cgb%7CEFC45849%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084133%7Cgb%7CEFC37829%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284084133%7Cgb%7CEFC37829%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093050%7Cgb%7CEFC46689%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284093050%7Cgb%7CEFC46689%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081499%7Cgb%7CEFC35479%2E1%7C.for.102938-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102938-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102938-104469.gi%7C284081499%7Cgb%7CEFC35479%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090387%7Cgb%7CEFC44039%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284090387%7Cgb%7CEFC44039%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083870%7Cgb%7CEFC37569%2E1%7C.for.102545-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.gi%7C284083870%7Cgb%7CEFC37569%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090106%7Cgb%7CEFC43759%2E1%7C.for.102563-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104469.gi%7C284090106%7Cgb%7CEFC43759%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092467%7Cgb%7CEFC46109%2E1%7C.for.102563-104442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104442.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104442.gi%7C284092467%7Cgb%7CEFC46109%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081169%7Cgb%7CEFC35319%2E1%7C.for.103178-104463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103178-104463.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103178-104463.gi%7C284081169%7Cgb%7CEFC35319%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081941%7Cgb%7CEFC35759%2E1%7C.for.102899-104112.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102899-104112.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102899-104112.gi%7C284081941%7Cgb%7CEFC35759%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C7140539%7Cgb%7CAAF37002%2E1%7C.for.102551-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.gi%7C7140539%7Cgb%7CAAF37002%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C41016928%7Csp%7CQ9NJV4%2E1%7CACT1_NAEGR.for.102551-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.gi%7C41016928%7Csp%7CQ9NJV4%2E1%7CACT1_NAEGR.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091080%7Cgb%7CEFC44728%2E1%7C.for.102551-104346.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104346.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104346.gi%7C284091080%7Cgb%7CEFC44728%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081758%7Cgb%7CEFC35638%2E1%7C.for.102899-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102899-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102899-104469.gi%7C284081758%7Cgb%7CEFC35638%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090316%7Cgb%7CEFC43968%2E1%7C.for.102530-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102530-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102530-104469.gi%7C284090316%7Cgb%7CEFC43968%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087026%7Cgb%7CEFC40698%2E1%7C.for.102566-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102566-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102566-104469.gi%7C284087026%7Cgb%7CEFC40698%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085061%7Cgb%7CEFC38748%2E1%7C.for.102557-104451.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102557-104451.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102557-104451.gi%7C284085061%7Cgb%7CEFC38748%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084193%7Cgb%7CEFC37888%2E1%7C.for.102560-104460.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104460.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104460.gi%7C284084193%7Cgb%7CEFC37888%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091169%7Cgb%7CEFC44817%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284091169%7Cgb%7CEFC44817%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089912%7Cgb%7CEFC43567%2E1%7C.for.102554-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-104469.gi%7C284089912%7Cgb%7CEFC43567%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096128%7Cgb%7CEFC49757%2E1%7C.for.102551-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.gi%7C284096128%7Cgb%7CEFC49757%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089027%7Cgb%7CEFC42687%2E1%7C.for.102545-104463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104463.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104463.gi%7C284089027%7Cgb%7CEFC42687%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095858%7Cgb%7CEFC49487%2E1%7C.for.102557-104463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102557-104463.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102557-104463.gi%7C284095858%7Cgb%7CEFC49487%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094965%7Cgb%7CEFC48597%2E1%7C.for.102566-104382.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102566-104382.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102566-104382.gi%7C284094965%7Cgb%7CEFC48597%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089319%7Cgb%7CEFC42977%2E1%7C.for.102938-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102938-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102938-104469.gi%7C284089319%7Cgb%7CEFC42977%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094182%7Cgb%7CEFC47817%2E1%7C.for.103238-104466.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103238-104466.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103238-104466.gi%7C284094182%7Cgb%7CEFC47817%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092093%7Cgb%7CEFC45736%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284092093%7Cgb%7CEFC45736%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081879%7Cgb%7CEFC35716%2E1%7C.for.102899-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102899-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102899-104469.gi%7C284081879%7Cgb%7CEFC35716%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096899%7Cgb%7CEFC50526%2E1%7C.for.102554-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-104469.gi%7C284096899%7Cgb%7CEFC50526%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089740%7Cgb%7CEFC43396%2E1%7C.for.102545-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.gi%7C284089740%7Cgb%7CEFC43396%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089378%7Cgb%7CEFC43036%2E1%7C.for.102560-104442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104442.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104442.gi%7C284089378%7Cgb%7CEFC43036%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092856%7Cgb%7CEFC46496%2E1%7C.for.102545-104442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104442.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104442.gi%7C284092856%7Cgb%7CEFC46496%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094994%7Cgb%7CEFC48626%2E1%7C.for.102563-104463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104463.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104463.gi%7C284094994%7Cgb%7CEFC48626%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087839%7Cgb%7CEFC41506%2E1%7C.for.102545-104463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104463.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104463.gi%7C284087839%7Cgb%7CEFC41506%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083654%7Cgb%7CEFC37355%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284083654%7Cgb%7CEFC37355%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096006%7Cgb%7CEFC49635%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284096006%7Cgb%7CEFC49635%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085784%7Cgb%7CEFC39465%2E1%7C.for.102545-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.gi%7C284085784%7Cgb%7CEFC39465%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094441%7Cgb%7CEFC48075%2E1%7C.for.102545-104463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104463.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104463.gi%7C284094441%7Cgb%7CEFC48075%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093507%7Cgb%7CEFC47145%2E1%7C.for.102545-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.gi%7C284093507%7Cgb%7CEFC47145%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091207%7Cgb%7CEFC44855%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284091207%7Cgb%7CEFC44855%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090413%7Cgb%7CEFC44065%2E1%7C.for.102554-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-104469.gi%7C284090413%7Cgb%7CEFC44065%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093025%7Cgb%7CEFC46665%2E1%7C.for.102545-104073.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104073.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104073.gi%7C284093025%7Cgb%7CEFC46665%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090925%7Cgb%7CEFC44574%2E1%7C.for.102560-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104469.gi%7C284090925%7Cgb%7CEFC44574%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096977%7Cgb%7CEFC50604%2E1%7C.for.102674-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102674-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102674-104469.gi%7C284096977%7Cgb%7CEFC50604%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086629%7Cgb%7CEFC40304%2E1%7C.for.102551-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.gi%7C284086629%7Cgb%7CEFC40304%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095925%7Cgb%7CEFC49554%2E1%7C.for.102545-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.gi%7C284095925%7Cgb%7CEFC49554%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084108%7Cgb%7CEFC37804%2E1%7C.for.102542-103899.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-103899.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-103899.gi%7C284084108%7Cgb%7CEFC37804%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097217%7Cgb%7CEFC50844%2E1%7C.for.102551-104463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104463.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104463.gi%7C284097217%7Cgb%7CEFC50844%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087564%7Cgb%7CEFC41233%2E1%7C.for.105921-107575.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105921-107575.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105921-107575.gi%7C284087564%7Cgb%7CEFC41233%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083763%7Cgb%7CEFC37463%2E1%7C.for.105939-107563.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105939-107563.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105939-107563.gi%7C284083763%7Cgb%7CEFC37463%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087027%7Cgb%7CEFC40699%2E1%7C.for.105870-107503.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105870-107503.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105870-107503.gi%7C284087027%7Cgb%7CEFC40699%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093481%7Cgb%7CEFC47119%2E1%7C.for.105897-107503.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105897-107503.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105897-107503.gi%7C284093481%7Cgb%7CEFC47119%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087852%7Cgb%7CEFC41519%2E1%7C.for.105918-107479.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105918-107479.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105918-107479.gi%7C284087852%7Cgb%7CEFC41519%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083950%7Cgb%7CEFC37648%2E1%7C.for.105891-107584.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105891-107584.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105891-107584.gi%7C284083950%7Cgb%7CEFC37648%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084476%7Cgb%7CEFC38168%2E1%7C.for.105891-107422.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105891-107422.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105891-107422.gi%7C284084476%7Cgb%7CEFC38168%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088746%7Cgb%7CEFC42408%2E1%7C.for.105876-107506.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105876-107506.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105876-107506.gi%7C284088746%7Cgb%7CEFC42408%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095404%7Cgb%7CEFC49035%2E1%7C.for.124756-128537.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.124756-128537.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.124756-128537.gi%7C284095404%7Cgb%7CEFC49035%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090058%7Cgb%7CEFC43712%2E1%7C.for.129157-130455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.129157-130455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.129157-130455.gi%7C284090058%7Cgb%7CEFC43712%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095332%7Cgb%7CEFC48963%2E1%7C.for.132784-134747.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.132784-134747.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.132784-134747.gi%7C284095332%7Cgb%7CEFC48963%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093977%7Cgb%7CEFC47613%2E1%7C.for.139882-141374.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139882-141374.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139882-141374.gi%7C284093977%7Cgb%7CEFC47613%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088986%7Cgb%7CEFC42646%2E1%7C.for.139876-141374.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139876-141374.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139876-141374.gi%7C284088986%7Cgb%7CEFC42646%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084480%7Cgb%7CEFC38172%2E1%7C.for.140935-142691.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.140935-142691.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.140935-142691.gi%7C284084480%7Cgb%7CEFC38172%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084385%7Cgb%7CEFC38078%2E1%7C.for.140935-142691.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.140935-142691.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.140935-142691.gi%7C284084385%7Cgb%7CEFC38078%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093250%7Cgb%7CEFC46889%2E1%7C.for.144298-145361.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.144298-145361.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.144298-145361.gi%7C284093250%7Cgb%7CEFC46889%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.154523-157683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154523-157683.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154523-157683.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.for.154520-157728.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154520-157728.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154520-157728.gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.for.154493-157671.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154493-157671.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154493-157671.gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.for.154550-157671.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154550-157671.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154550-157671.gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088147%7Cgb%7CEFC41812%2E1%7C.for.154784-157671.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154784-157671.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154784-157671.gi%7C284088147%7Cgb%7CEFC41812%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.for.154781-157494.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154781-157494.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154781-157494.gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084257%7Cgb%7CEFC37951%2E1%7C.for.154544-158337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154544-158337.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154544-158337.gi%7C284084257%7Cgb%7CEFC37951%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.for.154526-157821.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154526-157821.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154526-157821.gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.for.154514-157683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154514-157683.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154514-157683.gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.for.154550-157683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154550-157683.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154550-157683.gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087408%7Cgb%7CEFC41078%2E1%7C.for.154526-157671.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154526-157671.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154526-157671.gi%7C284087408%7Cgb%7CEFC41078%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084506%7Cgb%7CEFC38198%2E1%7C.for.154550-157707.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154550-157707.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154550-157707.gi%7C284084506%7Cgb%7CEFC38198%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094023%7Cgb%7CEFC47658%2E1%7C.for.154526-157677.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154526-157677.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154526-157677.gi%7C284094023%7Cgb%7CEFC47658%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.for.154940-157443.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154940-157443.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154940-157443.gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091599%7Cgb%7CEFC45245%2E1%7C.for.154628-157437.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154628-157437.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154628-157437.gi%7C284091599%7Cgb%7CEFC45245%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.for.154991-157653.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154991-157653.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154991-157653.gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097262%7Cgb%7CEFC50889%2E1%7C.for.161178-163191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.161178-163191.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.161178-163191.gi%7C284097262%7Cgb%7CEFC50889%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096748%7Cgb%7CEFC50375%2E1%7C.for.164142-165611.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.164142-165611.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.164142-165611.gi%7C284096748%7Cgb%7CEFC50375%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095896%7Cgb%7CEFC49525%2E1%7C.for.164151-165614.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.164151-165614.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.164151-165614.gi%7C284095896%7Cgb%7CEFC49525%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094517%7Cgb%7CEFC48151%2E1%7C.for.167331-168490.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167331-168490.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167331-168490.gi%7C284094517%7Cgb%7CEFC48151%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090204%7Cgb%7CEFC43857%2E1%7C.for.168021-169063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.168021-169063.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.168021-169063.gi%7C284090204%7Cgb%7CEFC43857%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085110%7Cgb%7CEFC38796%2E1%7C.for.180033-181667.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.180033-181667.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.180033-181667.gi%7C284085110%7Cgb%7CEFC38796%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089126%7Cgb%7CEFC42785%2E1%7C.for.184670-185961.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.184670-185961.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.184670-185961.gi%7C284089126%7Cgb%7CEFC42785%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085008%7Cgb%7CEFC38695%2E1%7C.for.184670-185745.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.184670-185745.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.184670-185745.gi%7C284085008%7Cgb%7CEFC38695%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084707%7Cgb%7CEFC38397%2E1%7C.for.187068-188147.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.187068-188147.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.187068-188147.gi%7C284084707%7Cgb%7CEFC38397%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089061%7Cgb%7CEFC42721%2E1%7C.for.188067-192365.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.188067-192365.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.188067-192365.gi%7C284089061%7Cgb%7CEFC42721%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089121%7Cgb%7CEFC42780%2E1%7C.for.197096-200432.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.197096-200432.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.197096-200432.gi%7C284089121%7Cgb%7CEFC42780%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089246%7Cgb%7CEFC42905%2E1%7C.for.202027-204158.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.202027-204158.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.202027-204158.gi%7C284089246%7Cgb%7CEFC42905%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094815%7Cgb%7CEFC48448%2E1%7C.for.205605-208688.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.205605-208688.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.205605-208688.gi%7C284094815%7Cgb%7CEFC48448%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086419%7Cgb%7CEFC40096%2E1%7C.for.209039-216557.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.209039-216557.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.209039-216557.gi%7C284086419%7Cgb%7CEFC40096%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:43 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:43 now processing 0 total clusters:43 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:43 now processing 0 total clusters:43 now processing 0 ...processing 0 of 64 ...processing 1 of 64 ...processing 2 of 64 ...processing 3 of 64 ...processing 4 of 64 ...processing 5 of 64 ...processing 6 of 64 ...processing 7 of 64 ...processing 8 of 64 ...processing 9 of 64 ...processing 10 of 64 ...processing 11 of 64 ...processing 12 of 64 ...processing 13 of 64 ...processing 14 of 64 ...processing 15 of 64 ...processing 16 of 64 ...processing 17 of 64 ...processing 18 of 64 ...processing 19 of 64 ...processing 20 of 64 ...processing 21 of 64 ...processing 22 of 64 ...processing 23 of 64 ...processing 24 of 64 ...processing 25 of 64 ...processing 26 of 64 ...processing 27 of 64 ...processing 28 of 64 ...processing 29 of 64 ...processing 30 of 64 ...processing 31 of 64 ...processing 32 of 64 ...processing 33 of 64 ...processing 34 of 64 ...processing 35 of 64 ...processing 36 of 64 ...processing 37 of 64 ...processing 38 of 64 ...processing 39 of 64 ...processing 40 of 64 ...processing 41 of 64 ...processing 42 of 64 ...processing 43 of 64 ...processing 44 of 64 ...processing 45 of 64 ...processing 46 of 64 ...processing 47 of 64 ...processing 48 of 64 ...processing 49 of 64 ...processing 50 of 64 ...processing 51 of 64 ...processing 52 of 64 ...processing 53 of 64 ...processing 54 of 64 ...processing 55 of 64 ...processing 56 of 64 ...processing 57 of 64 ...processing 58 of 64 ...processing 59 of 64 ...processing 60 of 64 ...processing 61 of 64 ...processing 62 of 64 ...processing 63 of 64 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:43 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:43 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 62 ...processing 1 of 62 ...processing 2 of 62 ...processing 3 of 62 ...processing 4 of 62 ...processing 5 of 62 ...processing 6 of 62 ...processing 7 of 62 ...processing 8 of 62 ...processing 9 of 62 ...processing 10 of 62 ...processing 11 of 62 ...processing 12 of 62 ...processing 13 of 62 ...processing 14 of 62 ...processing 15 of 62 ...processing 16 of 62 ...processing 17 of 62 ...processing 18 of 62 ...processing 19 of 62 ...processing 20 of 62 ...processing 21 of 62 ...processing 22 of 62 ...processing 23 of 62 ...processing 24 of 62 ...processing 25 of 62 ...processing 26 of 62 ...processing 27 of 62 ...processing 28 of 62 ...processing 29 of 62 ...processing 30 of 62 ...processing 31 of 62 ...processing 32 of 62 ...processing 33 of 62 ...processing 34 of 62 ...processing 35 of 62 ...processing 36 of 62 ...processing 37 of 62 ...processing 38 of 62 ...processing 39 of 62 ...processing 40 of 62 ...processing 41 of 62 ...processing 42 of 62 ...processing 43 of 62 ...processing 44 of 62 ...processing 45 of 62 ...processing 46 of 62 ...processing 47 of 62 ...processing 48 of 62 ...processing 49 of 62 ...processing 50 of 62 ...processing 51 of 62 ...processing 52 of 62 ...processing 53 of 62 ...processing 54 of 62 ...processing 55 of 62 ...processing 56 of 62 ...processing 57 of 62 ...processing 58 of 62 ...processing 59 of 62 ...processing 60 of 62 ...processing 61 of 62 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 ...processing 0 of 21 ...processing 1 of 21 ...processing 2 of 21 ...processing 3 of 21 ...processing 4 of 21 ...processing 5 of 21 ...processing 6 of 21 ...processing 7 of 21 ...processing 8 of 21 ...processing 9 of 21 ...processing 10 of 21 ...processing 11 of 21 ...processing 12 of 21 ...processing 13 of 21 ...processing 14 of 21 ...processing 15 of 21 ...processing 16 of 21 ...processing 17 of 21 ...processing 18 of 21 ...processing 19 of 21 ...processing 20 of 21 ...trimming the rest total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 18 ...processing 1 of 18 ...processing 2 of 18 ...processing 3 of 18 ...processing 4 of 18 ...processing 5 of 18 ...processing 6 of 18 ...processing 7 of 18 ...processing 8 of 18 ...processing 9 of 18 ...processing 10 of 18 ...processing 11 of 18 ...processing 12 of 18 ...processing 13 of 18 ...processing 14 of 18 ...processing 15 of 18 ...processing 16 of 18 ...processing 17 of 18 ...processing 0 of 20 ...processing 1 of 20 ...processing 2 of 20 ...processing 3 of 20 ...processing 4 of 20 ...processing 5 of 20 ...processing 6 of 20 ...processing 7 of 20 ...processing 8 of 20 ...processing 9 of 20 ...processing 10 of 20 ...processing 11 of 20 ...processing 12 of 20 ...processing 13 of 20 ...processing 14 of 20 ...processing 15 of 20 ...processing 16 of 20 ...processing 17 of 20 ...processing 18 of 20 ...processing 19 of 20 ...trimming the rest ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 20 ...processing 1 of 20 ...processing 2 of 20 ...processing 3 of 20 ...processing 4 of 20 ...processing 5 of 20 ...processing 6 of 20 ...processing 7 of 20 ...processing 8 of 20 ...processing 9 of 20 ...processing 10 of 20 ...processing 11 of 20 ...processing 12 of 20 ...processing 13 of 20 ...processing 14 of 20 ...processing 15 of 20 ...processing 16 of 20 ...processing 17 of 20 ...processing 18 of 20 ...processing 19 of 20 ...trimming the rest ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.2005-2807.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.2005-2807.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.2005-2807.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.5530-7787.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.5530-7787.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.5530-7787.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.10288-11233.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.10288-11233.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.10288-11233.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.12116-15315.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.12116-15315.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.12116-15315.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.19006-20102.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.19006-20102.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.19006-20102.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.21536-22595.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.21536-22595.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.21536-22595.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.25950-27655.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.25950-27655.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.25950-27655.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.27857-31715.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.27857-31715.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.27857-31715.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.35586-37309.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.35586-37309.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.35586-37309.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.40730-41618.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.40730-41618.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.40730-41618.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.43708-45000.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.43708-45000.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.43708-45000.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.49527-52473.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.49527-52473.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.49527-52473.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.53672-54413.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.53672-54413.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.53672-54413.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.54492-55318.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.54492-55318.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.54492-55318.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.55881-56863.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.55881-56863.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.55881-56863.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.57280-60097.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.57280-60097.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.57280-60097.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.66697-68021.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.66697-68021.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.66697-68021.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.69158-70100.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.69158-70100.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.69158-70100.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.78085-79067.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.78085-79067.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.78085-79067.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.80532-81487.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.80532-81487.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.80532-81487.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.93822-94850.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.93822-94850.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.93822-94850.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.101415-102357.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.101415-102357.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.101415-102357.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.102627-104449.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.102627-104449.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.102627-104449.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.108513-109328.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.108513-109328.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.108513-109328.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.111791-113231.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.111791-113231.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.111791-113231.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.113930-114726.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.113930-114726.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.113930-114726.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.124943-129695.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.124943-129695.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.124943-129695.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.132983-134579.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.132983-134579.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.132983-134579.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.138571-139595.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.138571-139595.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.138571-139595.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.141080-142508.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.141080-142508.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.141080-142508.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.143385-144467.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.143385-144467.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.143385-144467.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.154722-157471.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.154722-157471.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.154722-157471.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.164341-165667.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.164341-165667.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.164341-165667.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.167354-168389.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.167354-168389.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.167354-168389.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.168992-169495.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.168992-169495.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.168992-169495.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.174395-175263.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.174395-175263.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.174395-175263.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.178304-180211.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.178304-180211.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.178304-180211.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.180232-181471.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.180232-181471.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.180232-181471.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.184599-185803.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.184599-185803.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.184599-185803.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.188266-192165.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.188266-192165.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.188266-192165.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/40_0.209238-216357.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/40_0.209238-216357.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/40_0.209238-216357.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/41_0.8368-9559.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/41_0.8368-9559.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/41_0.8368-9559.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/42_0.15647-16209.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/42_0.15647-16209.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/42_0.15647-16209.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/43_0.19709-21488.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/43_0.19709-21488.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/43_0.19709-21488.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/44_0.31442-32094.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/44_0.31442-32094.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/44_0.31442-32094.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/45_0.32607-33730.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/45_0.32607-33730.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/45_0.32607-33730.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/46_0.36998-38200.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/46_0.36998-38200.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/46_0.36998-38200.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/47_0.41399-43026.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/47_0.41399-43026.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/47_0.41399-43026.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/48_0.46534-49127.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/48_0.46534-49127.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/48_0.46534-49127.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/49_0.60601-62837.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/49_0.60601-62837.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/49_0.60601-62837.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/50_0.71180-72791.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/50_0.71180-72791.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/50_0.71180-72791.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/51_0.73817-77145.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/51_0.73817-77145.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/51_0.73817-77145.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/52_0.81575-82706.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/52_0.81575-82706.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/52_0.81575-82706.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/53_0.94722-95805.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/53_0.94722-95805.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/53_0.94722-95805.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/54_0.96303-98215.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/54_0.96303-98215.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/54_0.96303-98215.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/55_0.98398-99325.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/55_0.98398-99325.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/55_0.98398-99325.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/56_0.102756-103291.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/56_0.102756-103291.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/56_0.102756-103291.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/57_0.103462-104351.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/57_0.103462-104351.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/57_0.103462-104351.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/58_0.106037-107477.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/58_0.106037-107477.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/58_0.106037-107477.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/59_0.109445-110094.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/59_0.109445-110094.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/59_0.109445-110094.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/60_0.129342-130265.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/60_0.129342-130265.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/60_0.129342-130265.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/61_0.139478-141218.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/61_0.139478-141218.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/61_0.139478-141218.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/62_0.142324-143297.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/62_0.142324-143297.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/62_0.142324-143297.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/63_0.144390-145272.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/63_0.144390-145272.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/63_0.144390-145272.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/64_0.151376-152918.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/64_0.151376-152918.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/64_0.151376-152918.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/65_0.161368-163003.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/65_0.161368-163003.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/65_0.161368-163003.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/66_0.166496-167680.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/66_0.166496-167680.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/66_0.166496-167680.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/67_0.168050-168863.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/67_0.168050-168863.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/67_0.168050-168863.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/68_0.172890-173863.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/68_0.172890-173863.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/68_0.172890-173863.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/69_0.175424-178257.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/69_0.175424-178257.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/69_0.175424-178257.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/70_0.181713-183091.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/70_0.181713-183091.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/70_0.181713-183091.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/71_0.186218-187151.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/71_0.186218-187151.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/71_0.186218-187151.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/72_0.187267-187947.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/72_0.187267-187947.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/72_0.187267-187947.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/73_0.191838-193043.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/73_0.191838-193043.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/73_0.191838-193043.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/74_0.195498-196803.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/74_0.195498-196803.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/74_0.195498-196803.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/75_0.197295-200760.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/75_0.197295-200760.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/75_0.197295-200760.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/76_0.201498-203971.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/76_0.201498-203971.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/76_0.201498-203971.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/77_0.205804-208491.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/77_0.205804-208491.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/77_0.205804-208491.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C20 Length: 38198 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:45 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:39 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:32 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:47 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:32 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:53 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:33 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:46 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:43 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:43 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:6 current j:0 j_size:6 current j:1 j_size:6 current j:2 j_size:6 current j:3 j_size:6 current j:4 j_size:6 current j:5 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C20.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C20.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18583%7Cnpad-.for.1604-3053.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1604-3053.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1604-3053.Ar_EST_120301b_rep_c18583%7Cnpad-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7720%7Ccfw16-.for.1383-2872.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1383-2872.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1383-2872.Ar_EST_120301b_rep_c7720%7Ccfw16-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19891%7Cxotch.for.707-2213.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.707-2213.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.707-2213.Ar_EST_120301b_c19891%7Cxotch.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11264%7Cfr663913.for.1286-2855.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1286-2855.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1286-2855.Ar_EST_120301b_rep_c11264%7Cfr663913.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18557%7Chypothetical.for.708-2095.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.708-2095.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.708-2095.Ar_EST_120301b_c18557%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19899%7Cccfh.for.1605-3040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1605-3040.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1605-3040.Ar_EST_120301b_rep_c19899%7Cccfh.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19932%7Cccfh.for.1559-2870.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1559-2870.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1559-2870.Ar_EST_120301b_rep_c19932%7Cccfh.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10247%7Cccza.for.1600-2933.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1600-2933.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1600-2933.Ar_EST_120301b_rep_c10247%7Cccza.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20330%7Chypothetical.for.837-1940.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.837-1940.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.837-1940.Ar_EST_120301b_rep_c20330%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12661%7C---NA---.for.5097-6432.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.5097-6432.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.5097-6432.Ar_EST_120301b_c12661%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17581%7Cdnaj.for.12404-13615.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.12404-13615.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.12404-13615.Ar_EST_120301b_c17581%7Cdnaj.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2840%7C---NA---.for.13023-14330.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.13023-14330.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.13023-14330.Ar_EST_120301b_c2840%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9108%7Caj495322.for.14219-15252.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.14219-15252.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.14219-15252.Ar_EST_120301b_c9108%7Caj495322.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12145%7Cfq013894.for.21499-22670.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.21499-22670.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.21499-22670.Ar_EST_120301b_c12145%7Cfq013894.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10994%7Cct751907.for.22605-23506.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.22605-23506.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.22605-23506.Ar_EST_120301b_c10994%7Cct751907.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17786%7Ckr3b.for.29517-30923.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.29517-30923.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.29517-30923.Ar_EST_120301b_c17786%7Ckr3b.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10857%7C---NA---.for.30343-31585.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.30343-31585.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.30343-31585.Ar_EST_120301b_c10857%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15255%7Cresponse.for.37377-38198.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.37377-38198.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.37377-38198.Ar_EST_120301b_c15255%7Cresponse.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13487%7Cseed.for.37227-38178.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.37227-38178.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.37227-38178.Ar_EST_120301b_c13487%7Cseed.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:9 now processing 0 total clusters:9 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:6 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:7 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:3 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:7 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:7 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:4 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:4 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:7 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:6 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:8 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091150%7Cgb%7CEFC44798%2E1%7C.for.8240-10218.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.8240-10218.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.8240-10218.gi%7C284091150%7Cgb%7CEFC44798%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088477%7Cgb%7CEFC42140%2E1%7C.for.9487-12538.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.9487-12538.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.9487-12538.gi%7C284088477%7Cgb%7CEFC42140%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... cleaning clusters.... total clusters:2 now processing 0 total clusters:2 now processing 0 cleaning clusters.... total clusters:1 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:6 now processing 0 total clusters:6 now processing 0 total clusters:6 now processing 0 total clusters:6 now processing 0 total clusters:6 now processing 0 total clusters:6 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:5 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:5 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:5 now processing 0 total clusters:5 now processing 0 total clusters:5 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.1494-2766.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.1494-2766.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.1494-2766.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.8439-10018.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.8439-10018.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.8439-10018.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.13222-14130.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.13222-14130.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.13222-14130.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.21660-22549.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.21660-22549.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.21660-22549.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.29658-30723.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.29658-30723.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.29658-30723.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.867-2865.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.867-2865.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.867-2865.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.5296-6232.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.5296-6232.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.5296-6232.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.9686-12338.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.9686-12338.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.9686-12338.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.37550-38198.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.37550-38198.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.37550-38198.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C21 Length: 24727 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C21.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C21.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5800%7Cprotein.for.2340-4098.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.2340-4098.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.2340-4098.Ar_EST_120301b_rep_c5800%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4503%7Cpredicted.for.6316-7743.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.6316-7743.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.6316-7743.Ar_EST_120301b_rep_c4503%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17043%7Ccpad-.for.6339-7461.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.6339-7461.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.6339-7461.Ar_EST_120301b_rep_c17043%7Ccpad-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17466%7C---NA---.for.7916-8809.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.7916-8809.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.7916-8809.Ar_EST_120301b_c17466%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14567%7Cvacuolar.for.9221-10207.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.9221-10207.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.9221-10207.Ar_EST_120301b_c14567%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3574%7Cankyrin.for.9580-11322.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.9580-11322.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.9580-11322.Ar_EST_120301b_c3574%7Cankyrin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10050%7Cunnamed.for.11732-13128.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.11732-13128.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.11732-13128.Ar_EST_120301b_c10050%7Cunnamed.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16424%7Canolis.for.11685-13057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.11685-13057.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.11685-13057.Ar_EST_120301b_c16424%7Canolis.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20139%7Cproteasome.for.13952-15118.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.13952-15118.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.13952-15118.Ar_EST_120301b_rep_c20139%7Cproteasome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13540%7Cproteasome.for.14127-15285.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.14127-15285.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.14127-15285.Ar_EST_120301b_rep_c13540%7Cproteasome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17751%7Cproteasome.for.14041-15068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.14041-15068.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.14041-15068.Ar_EST_120301b_rep_c17751%7Cproteasome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4249%7Cprotein.for.13843-15445.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.13843-15445.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.13843-15445.Ar_EST_120301b_rep_c4249%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5673%7Cprotein.for.13889-15485.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.13889-15485.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.13889-15485.Ar_EST_120301b_rep_c5673%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18370%7Cgadus.for.17163-18491.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.17163-18491.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.17163-18491.Ar_EST_120301b_c18370%7Cgadus.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19634%7Cvirulent.for.19726-21273.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.19726-21273.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.19726-21273.Ar_EST_120301b_c19634%7Cvirulent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8853%7Ccopper.for.19140-21075.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.19140-21075.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.19140-21075.Ar_EST_120301b_c8853%7Ccopper.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1070%7Cdiguanylate.for.21034-22812.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.21034-22812.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.21034-22812.120301b_Contig1070%7Cdiguanylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1904%7Cprotein.for.22134-23516.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.22134-23516.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.22134-23516.Ar_EST_120301b_c1904%7Cprotein.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 total clusters:12 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:4 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:3 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:4 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:7 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:1 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095582%7Cgb%7CEFC49212%2E1%7C.for.2381-4068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.2381-4068.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.2381-4068.gi%7C284095582%7Cgb%7CEFC49212%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094662%7Cgb%7CEFC48295%2E1%7C.for.7742-9864.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.7742-9864.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.7742-9864.gi%7C284094662%7Cgb%7CEFC48295%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084498%7Cgb%7CEFC38190%2E1%7C.for.11338-12284.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.11338-12284.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.11338-12284.gi%7C284084498%7Cgb%7CEFC38190%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092281%7Cgb%7CEFC45924%2E1%7C.for.13885-15347.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.13885-15347.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.13885-15347.gi%7C284092281%7Cgb%7CEFC45924%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:3 now processing 0 total clusters:3 now processing 0 total clusters:3 now processing 0 in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:3 now processing 0 total clusters:3 now processing 0 total clusters:3 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:5 now processing 0 total clusters:5 now processing 0 total clusters:5 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:5 now processing 0 total clusters:5 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.2539-3898.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.2539-3898.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.2539-3898.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.7941-11126.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.7941-11126.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.7941-11126.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.19260-20889.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.19260-20889.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.19260-20889.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.21233-23332.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.21233-23332.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.21233-23332.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.6512-7543.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.6512-7543.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.6512-7543.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.11878-12928.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.11878-12928.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.11878-12928.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.14042-15285.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.14042-15285.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.14042-15285.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.17362-18291.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.17362-18291.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.17362-18291.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C22 Length: 180468 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C22.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C22.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15895%7Cgm-c1079.for.1-833.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.1-833.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.1-833.Ar_EST_120301b_c15895%7Cgm-c1079.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8111%7Ccbwo.for.3047-4827.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.3047-4827.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.3047-4827.Ar_EST_120301b_c8111%7Ccbwo.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15281%7Cche.for.4950-6277.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.4950-6277.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.4950-6277.Ar_EST_120301b_c15281%7Cche.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13217%7C020709ofm1010015ht.for.10660-11968.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.10660-11968.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.10660-11968.Ar_EST_120301b_c13217%7C020709ofm1010015ht.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17472%7Cfgp.for.14234-15465.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.14234-15465.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.14234-15465.Ar_EST_120301b_c17472%7Cfgp.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2415%7Cdomain-containing.for.14389-16400.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.14389-16400.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.14389-16400.Ar_EST_120301b_c2415%7Cdomain-containing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2973%7Crho.for.15426-17284.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.15426-17284.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.15426-17284.Ar_EST_120301b_c2973%7Crho.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3263%7Cnuphar.for.15935-17294.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.15935-17294.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.15935-17294.Ar_EST_120301b_c3263%7Cnuphar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1203%7Cthioredoxin.for.19166-20557.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.19166-20557.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.19166-20557.Ar_EST_120301b_c1203%7Cthioredoxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11684%7Ccopper.for.20132-21528.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.20132-21528.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.20132-21528.Ar_EST_120301b_c11684%7Ccopper.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16190%7C---NA---.for.23672-24979.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.23672-24979.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.23672-24979.Ar_EST_120301b_c16190%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17194%7Cpredicted.for.26296-27953.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.26296-27953.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.26296-27953.Ar_EST_120301b_c17194%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1297%7Csolute.for.29407-30960.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.29407-30960.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.29407-30960.Ar_EST_120301b_c1297%7Csolute.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10700%7Csolute.for.30213-31391.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30213-31391.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30213-31391.Ar_EST_120301b_c10700%7Csolute.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12857%7Cprotein.for.30758-31969.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30758-31969.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30758-31969.Ar_EST_120301b_c12857%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18582%7Cprotein.for.30757-32943.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30757-32943.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30757-32943.Ar_EST_120301b_c18582%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4666%7Crho.for.32331-34513.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.32331-34513.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.32331-34513.Ar_EST_120301b_rep_c4666%7Crho.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6449%7Cdomain-containing.for.32564-34314.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.32564-34314.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.32564-34314.Ar_EST_120301b_rep_c6449%7Cdomain-containing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4579%7C1-acyl-sn-glycerol-3-phosphate.for.33988-35641.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.33988-35641.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.33988-35641.Ar_EST_120301b_rep_c4579%7C1-acyl-sn-glycerol-3-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3473%7Cprotein.for.35861-38720.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.35861-38720.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.35861-38720.Ar_EST_120301b_c3473%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11453%7Couter.for.38483-39907.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.38483-39907.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.38483-39907.Ar_EST_120301b_c11453%7Couter.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12870%7Couter.for.39201-40965.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.39201-40965.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.39201-40965.Ar_EST_120301b_c12870%7Couter.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10342%7C---NA---.for.40424-42250.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.40424-42250.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.40424-42250.Ar_EST_120301b_c10342%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14468%7Cprotein.for.43627-44751.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.43627-44751.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.43627-44751.Ar_EST_120301b_c14468%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12413%7Crp.for.49689-51198.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.49689-51198.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.49689-51198.Ar_EST_120301b_c12413%7Crp.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16757%7Cby805517.for.51678-52789.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.51678-52789.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.51678-52789.Ar_EST_120301b_c16757%7Cby805517.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13658%7Cats1.for.56100-57631.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.56100-57631.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.56100-57631.Ar_EST_120301b_c13658%7Cats1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15371%7Cprobable.for.55732-57167.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.55732-57167.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.55732-57167.Ar_EST_120301b_c15371%7Cprobable.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19612%7Cats1.for.56807-57882.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.56807-57882.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.56807-57882.Ar_EST_120301b_c19612%7Cats1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18250%7Calpha.for.57860-59681.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.57860-59681.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.57860-59681.Ar_EST_120301b_c18250%7Calpha.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17288%7Cusda-fp_187010.for.59310-60593.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.59310-60593.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.59310-60593.Ar_EST_120301b_c17288%7Cusda-fp_187010.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4677%7Celongation.for.62390-64153.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.62390-64153.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.62390-64153.Ar_EST_120301b_rep_c4677%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2115%7Cacyl.for.64729-66060.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.64729-66060.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.64729-66060.Ar_EST_120301b_c2115%7Cacyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12587%7Cdolichyl-phosphate.for.65716-66849.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.65716-66849.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.65716-66849.Ar_EST_120301b_c12587%7Cdolichyl-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2089%7Cdolichyl-phosphate.for.65880-67602.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.65880-67602.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.65880-67602.Ar_EST_120301b_c2089%7Cdolichyl-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12186%7Crwp-rk.for.67114-68491.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.67114-68491.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.67114-68491.Ar_EST_120301b_c12186%7Crwp-rk.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15048%7Cnih_xgc_tropbrn3.for.67816-69083.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.67816-69083.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.67816-69083.Ar_EST_120301b_c15048%7Cnih_xgc_tropbrn3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig91%7Cglutamine-fructose-6-phosphate.for.68451-71176.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.68451-71176.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.68451-71176.120301b_Contig91%7Cglutamine-fructose-6-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c875%7Cglucosamine--fructose-6-phosphate.for.69005-71325.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.69005-71325.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.69005-71325.Ar_EST_120301b_c875%7Cglucosamine--fructose-6-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10225%7Cglutamine-fructose-6-phosphate.for.69487-70699.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.69487-70699.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.69487-70699.Ar_EST_120301b_rep_c10225%7Cglutamine-fructose-6-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13849%7C---NA---.for.70740-72086.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.70740-72086.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.70740-72086.Ar_EST_120301b_c13849%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig561%7Cpredicted.for.72048-73967.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.72048-73967.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.72048-73967.120301b_Contig561%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10241%7Cbtb.for.74150-75505.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.74150-75505.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.74150-75505.Ar_EST_120301b_c10241%7Cbtb.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18380%7Cprotein.for.78688-79987.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.78688-79987.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.78688-79987.Ar_EST_120301b_c18380%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11068%7Ccaof_daphnia_pulex_log50_library_12.for.82440-83981.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.82440-83981.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.82440-83981.Ar_EST_120301b_c11068%7Ccaof_daphnia_pulex_log50_library_12.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig150%7Cpas.for.85931-87952.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.85931-87952.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.85931-87952.120301b_Contig150%7Cpas.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15760%7C---NA---.for.87182-88494.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.87182-88494.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.87182-88494.Ar_EST_120301b_c15760%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9718%7Cprotein.for.89190-90455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.89190-90455.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.89190-90455.Ar_EST_120301b_c9718%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11290%7Cgtpase.for.102845-104156.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102845-104156.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102845-104156.Ar_EST_120301b_c11290%7Cgtpase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13678%7Cendonuclease.for.105562-106984.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.105562-106984.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.105562-106984.Ar_EST_120301b_c13678%7Cendonuclease.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2395%7Cprotein.for.108892-110254.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.108892-110254.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.108892-110254.Ar_EST_120301b_c2395%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16257%7Cyeats.for.110089-111457.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.110089-111457.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.110089-111457.Ar_EST_120301b_c16257%7Cyeats.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16468%7Cest.for.110078-111244.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.110078-111244.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.110078-111244.Ar_EST_120301b_c16468%7Cest.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14583%7Chypothetical.for.111800-113156.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.111800-113156.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.111800-113156.Ar_EST_120301b_c14583%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19785%7Cglucan.for.114526-115915.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.114526-115915.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.114526-115915.Ar_EST_120301b_c19785%7Cglucan.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20171%7Cglucan.for.114230-115683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.114230-115683.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.114230-115683.Ar_EST_120301b_c20171%7Cglucan.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10824%7Cglucan.for.114190-115490.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.114190-115490.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.114190-115490.Ar_EST_120301b_c10824%7Cglucan.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11969%7CPREDICTED%3A.for.115347-116810.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.115347-116810.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.115347-116810.Ar_EST_120301b_c11969%7CPREDICTED%3A.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14936%7Cring.for.116229-117480.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.116229-117480.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.116229-117480.Ar_EST_120301b_c14936%7Cring.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1269%7Caplysia.for.118022-119337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.118022-119337.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.118022-119337.Ar_EST_120301b_c1269%7Caplysia.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12415%7Cpredicted.for.122628-123880.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.122628-123880.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.122628-123880.Ar_EST_120301b_c12415%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17487%7Calpha.for.123103-124405.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.123103-124405.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.123103-124405.Ar_EST_120301b_c17487%7Calpha.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17006%7Cchromosome.for.123729-124995.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.123729-124995.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.123729-124995.Ar_EST_120301b_c17006%7Cchromosome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12054%7C020304kaka008397ht.for.124400-125756.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.124400-125756.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.124400-125756.Ar_EST_120301b_c12054%7C020304kaka008397ht.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9314%7Csi%3Ach211-.for.125989-127607.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.125989-127607.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.125989-127607.Ar_EST_120301b_c9314%7Csi%3Ach211-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11616%7Cprotein.for.127524-129056.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.127524-129056.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.127524-129056.Ar_EST_120301b_c11616%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15708%7Cphosphoserine.for.130824-132017.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.130824-132017.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.130824-132017.Ar_EST_120301b_c15708%7Cphosphoserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c261%7Cphosphoserine.for.131284-132651.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.131284-132651.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.131284-132651.Ar_EST_120301b_c261%7Cphosphoserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17653%7Cphosphoserine.for.131806-133058.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.131806-133058.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.131806-133058.Ar_EST_120301b_rep_c17653%7Cphosphoserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14091%7Cphosphoserine.for.131966-133271.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.131966-133271.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.131966-133271.Ar_EST_120301b_c14091%7Cphosphoserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7121%7Cprotein.for.134097-135719.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.134097-135719.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.134097-135719.Ar_EST_120301b_rep_c7121%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig326%7Cprotein.for.132489-135331.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.132489-135331.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.132489-135331.120301b_Contig326%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16289%7Csec23.for.132743-134105.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.132743-134105.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.132743-134105.Ar_EST_120301b_rep_c16289%7Csec23.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6736%7Caristolochia.for.139828-141206.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139828-141206.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139828-141206.Ar_EST_120301b_rep_c6736%7Caristolochia.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6315%7Cest940366.for.139857-141104.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139857-141104.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139857-141104.Ar_EST_120301b_rep_c6315%7Cest940366.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13068%7Cpooled.for.139871-141029.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139871-141029.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139871-141029.Ar_EST_120301b_rep_c13068%7Cpooled.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13929%7Csq2de42675.for.140270-141202.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.140270-141202.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.140270-141202.Ar_EST_120301b_rep_c13929%7Csq2de42675.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11029%7Cimmunoglobulin.for.139980-141203.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139980-141203.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139980-141203.Ar_EST_120301b_rep_c11029%7Cimmunoglobulin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14946%7Cfy831988.for.140104-141032.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.140104-141032.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.140104-141032.Ar_EST_120301b_rep_c14946%7Cfy831988.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5615%7Cprotein.for.139845-141209.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139845-141209.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139845-141209.Ar_EST_120301b_rep_c5615%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20304%7Cufl_343_70.for.139878-141104.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139878-141104.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139878-141104.Ar_EST_120301b_rep_c20304%7Cufl_343_70.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10688%7Ccj376499.for.140485-141416.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.140485-141416.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.140485-141416.Ar_EST_120301b_c10688%7Ccj376499.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3843%7Cvam6.for.141243-143315.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.141243-143315.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.141243-143315.Ar_EST_120301b_c3843%7Cvam6.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3148%7Cvam6.for.142318-143604.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.142318-143604.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.142318-143604.Ar_EST_120301b_c3148%7Cvam6.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10706%7Cvam6.for.142929-144422.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.142929-144422.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.142929-144422.Ar_EST_120301b_c10706%7Cvam6.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig120%7C24-hydroxycholesterol.for.145010-146443.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.145010-146443.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.145010-146443.120301b_Contig120%7C24-hydroxycholesterol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10803%7Cm-phase.for.158962-160174.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.158962-160174.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.158962-160174.Ar_EST_120301b_c10803%7Cm-phase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3179%7Cm-phase.for.158622-160179.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.158622-160179.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.158622-160179.Ar_EST_120301b_c3179%7Cm-phase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1473%7Cprotein.for.160432-161822.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.160432-161822.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.160432-161822.Ar_EST_120301b_c1473%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15862%7Cu1.for.161228-162785.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.161228-162785.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.161228-162785.Ar_EST_120301b_c15862%7Cu1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1039%7Cprotein.for.162586-165745.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162586-165745.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162586-165745.Ar_EST_120301b_c1039%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12113%7Cphospholipid-transporting.for.164845-166131.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.164845-166131.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.164845-166131.Ar_EST_120301b_c12113%7Cphospholipid-transporting.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1202%7Cprotein.for.165461-167255.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.165461-167255.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.165461-167255.Ar_EST_120301b_c1202%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig428%7Celongation.for.167131-168358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.167131-168358.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.167131-168358.120301b_Contig428%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16475%7Cspindle.for.173063-174841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.173063-174841.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.173063-174841.Ar_EST_120301b_c16475%7Cspindle.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8917%7Cmicrotubule.for.174515-176826.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.174515-176826.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.174515-176826.Ar_EST_120301b_c8917%7Cmicrotubule.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2889%7Cmicrotubule.for.176603-178213.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.176603-178213.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.176603-178213.Ar_EST_120301b_c2889%7Cmicrotubule.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13984%7Cubiquinone.for.178435-179738.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.178435-179738.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.178435-179738.Ar_EST_120301b_c13984%7Cubiquinone.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16223%7Cpredicted.for.179641-180468.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.179641-180468.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.179641-180468.Ar_EST_120301b_rep_c16223%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c356%7Csenescence.for.179460-180468.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.179460-180468.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.179460-180468.Ar_EST_120301b_c356%7Csenescence.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17910%7Cvon.for.179465-180468.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.179465-180468.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.179465-180468.Ar_EST_120301b_rep_c17910%7Cvon.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:67 now processing 0 total clusters:67 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:67 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:67 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:67 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:67 now processing 0 total clusters:67 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:37 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:41 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:41 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:48 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:53 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:50 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:44 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:55 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:53 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:32 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090387%7Cgb%7CEFC44039%2E1%7C.for.5934-7992.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.5934-7992.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.5934-7992.gi%7C284090387%7Cgb%7CEFC44039%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086420%7Cgb%7CEFC40097%2E1%7C.for.5946-8004.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.5946-8004.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.5946-8004.gi%7C284086420%7Cgb%7CEFC40097%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095349%7Cgb%7CEFC48980%2E1%7C.for.13485-14822.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.13485-14822.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.13485-14822.gi%7C284095349%7Cgb%7CEFC48980%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088756%7Cgb%7CEFC42418%2E1%7C.for.18996-20509.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.18996-20509.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.18996-20509.gi%7C284088756%7Cgb%7CEFC42418%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085637%7Cgb%7CEFC39319%2E1%7C.for.21370-22523.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.21370-22523.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.21370-22523.gi%7C284085637%7Cgb%7CEFC39319%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093747%7Cgb%7CEFC47384%2E1%7C.for.21217-22490.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.21217-22490.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.21217-22490.gi%7C284093747%7Cgb%7CEFC47384%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090698%7Cgb%7CEFC44348%2E1%7C.for.29504-31352.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.29504-31352.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.29504-31352.gi%7C284090698%7Cgb%7CEFC44348%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087383%7Cgb%7CEFC41053%2E1%7C.for.30814-32875.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30814-32875.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30814-32875.gi%7C284087383%7Cgb%7CEFC41053%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090239%7Cgb%7CEFC43892%2E1%7C.for.30865-32893.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30865-32893.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30865-32893.gi%7C284090239%7Cgb%7CEFC43892%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096950%7Cgb%7CEFC50577%2E1%7C.for.57873-59706.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.57873-59706.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.57873-59706.gi%7C284096950%7Cgb%7CEFC50577%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084213%7Cgb%7CEFC37908%2E1%7C.for.60507-63139.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.60507-63139.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.60507-63139.gi%7C284084213%7Cgb%7CEFC37908%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082995%7Cgb%7CEFC36703%2E1%7C.for.64841-65805.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.64841-65805.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.64841-65805.gi%7C284082995%7Cgb%7CEFC36703%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089602%7Cgb%7CEFC43258%2E1%7C.for.64728-65820.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.64728-65820.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.64728-65820.gi%7C284089602%7Cgb%7CEFC43258%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090820%7Cgb%7CEFC44470%2E1%7C.for.65960-67598.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.65960-67598.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.65960-67598.gi%7C284090820%7Cgb%7CEFC44470%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086979%7Cgb%7CEFC40652%2E1%7C.for.68893-71309.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.68893-71309.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.68893-71309.gi%7C284086979%7Cgb%7CEFC40652%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092246%7Cgb%7CEFC45889%2E1%7C.for.72193-73918.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.72193-73918.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.72193-73918.gi%7C284092246%7Cgb%7CEFC45889%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092608%7Cgb%7CEFC46249%2E1%7C.for.72208-73689.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.72208-73689.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.72208-73689.gi%7C284092608%7Cgb%7CEFC46249%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090371%7Cgb%7CEFC44023%2E1%7C.for.77792-79425.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.77792-79425.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.77792-79425.gi%7C284090371%7Cgb%7CEFC44023%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083121%7Cgb%7CEFC36828%2E1%7C.for.77795-79434.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.77795-79434.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.77795-79434.gi%7C284083121%7Cgb%7CEFC36828%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096642%7Cgb%7CEFC50269%2E1%7C.for.78695-79815.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.78695-79815.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.78695-79815.gi%7C284096642%7Cgb%7CEFC50269%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090576%7Cgb%7CEFC44227%2E1%7C.for.81422-83085.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.81422-83085.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.81422-83085.gi%7C284090576%7Cgb%7CEFC44227%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089802%7Cgb%7CEFC43457%2E1%7C.for.96533-98537.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.96533-98537.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.96533-98537.gi%7C284089802%7Cgb%7CEFC43457%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096866%7Cgb%7CEFC50493%2E1%7C.for.102814-104145.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104145.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104145.gi%7C284096866%7Cgb%7CEFC50493%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095151%7Cgb%7CEFC48783%2E1%7C.for.102823-104157.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102823-104157.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102823-104157.gi%7C284095151%7Cgb%7CEFC48783%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094810%7Cgb%7CEFC48443%2E1%7C.for.102808-104136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102808-104136.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102808-104136.gi%7C284094810%7Cgb%7CEFC48443%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093204%7Cgb%7CEFC46843%2E1%7C.for.102814-104115.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104115.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104115.gi%7C284093204%7Cgb%7CEFC46843%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095060%7Cgb%7CEFC48692%2E1%7C.for.102805-104241.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102805-104241.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102805-104241.gi%7C284095060%7Cgb%7CEFC48692%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088157%7Cgb%7CEFC41822%2E1%7C.for.102802-104127.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104127.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104127.gi%7C284088157%7Cgb%7CEFC41822%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095231%7Cgb%7CEFC48862%2E1%7C.for.102814-104220.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104220.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104220.gi%7C284095231%7Cgb%7CEFC48862%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092330%7Cgb%7CEFC45972%2E1%7C.for.102808-104265.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102808-104265.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102808-104265.gi%7C284092330%7Cgb%7CEFC45972%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087986%7Cgb%7CEFC41652%2E1%7C.for.102802-104154.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104154.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104154.gi%7C284087986%7Cgb%7CEFC41652%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085175%7Cgb%7CEFC38861%2E1%7C.for.102793-104148.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102793-104148.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102793-104148.gi%7C284085175%7Cgb%7CEFC38861%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095711%7Cgb%7CEFC49341%2E1%7C.for.102790-104265.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102790-104265.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102790-104265.gi%7C284095711%7Cgb%7CEFC49341%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092198%7Cgb%7CEFC45841%2E1%7C.for.102802-104148.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104148.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104148.gi%7C284092198%7Cgb%7CEFC45841%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093945%7Cgb%7CEFC47581%2E1%7C.for.102811-104103.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102811-104103.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102811-104103.gi%7C284093945%7Cgb%7CEFC47581%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096673%7Cgb%7CEFC50300%2E1%7C.for.102805-104136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102805-104136.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102805-104136.gi%7C284096673%7Cgb%7CEFC50300%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087489%7Cgb%7CEFC41158%2E1%7C.for.102802-104265.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104265.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104265.gi%7C284087489%7Cgb%7CEFC41158%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083677%7Cgb%7CEFC37378%2E1%7C.for.102814-104127.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104127.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104127.gi%7C284083677%7Cgb%7CEFC37378%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081592%7Cgb%7CEFC35538%2E1%7C.for.102802-104157.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104157.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104157.gi%7C284081592%7Cgb%7CEFC35538%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096540%7Cgb%7CEFC50168%2E1%7C.for.102811-104127.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102811-104127.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102811-104127.gi%7C284096540%7Cgb%7CEFC50168%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086692%7Cgb%7CEFC40367%2E1%7C.for.102796-104265.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102796-104265.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102796-104265.gi%7C284086692%7Cgb%7CEFC40367%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087105%7Cgb%7CEFC40777%2E1%7C.for.102781-104211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102781-104211.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102781-104211.gi%7C284087105%7Cgb%7CEFC40777%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087910%7Cgb%7CEFC41577%2E1%7C.for.102790-104136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102790-104136.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102790-104136.gi%7C284087910%7Cgb%7CEFC41577%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087186%7Cgb%7CEFC40857%2E1%7C.for.102814-104124.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104124.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104124.gi%7C284087186%7Cgb%7CEFC40857%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095576%7Cgb%7CEFC49206%2E1%7C.for.102799-104136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102799-104136.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102799-104136.gi%7C284095576%7Cgb%7CEFC49206%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080992%7Cgb%7CEFC35256%2E1%7C.for.103025-104196.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.103025-104196.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.103025-104196.gi%7C284080992%7Cgb%7CEFC35256%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095585%7Cgb%7CEFC49215%2E1%7C.for.102802-104205.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104205.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104205.gi%7C284095585%7Cgb%7CEFC49215%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087063%7Cgb%7CEFC40735%2E1%7C.for.102808-104133.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102808-104133.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102808-104133.gi%7C284087063%7Cgb%7CEFC40735%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089507%7Cgb%7CEFC43164%2E1%7C.for.102793-104115.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102793-104115.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102793-104115.gi%7C284089507%7Cgb%7CEFC43164%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096356%7Cgb%7CEFC49984%2E1%7C.for.102781-104115.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102781-104115.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102781-104115.gi%7C284096356%7Cgb%7CEFC49984%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092994%7Cgb%7CEFC46634%2E1%7C.for.102814-104004.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104004.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104004.gi%7C284092994%7Cgb%7CEFC46634%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089169%7Cgb%7CEFC42828%2E1%7C.for.117066-118771.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.117066-118771.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.117066-118771.gi%7C284089169%7Cgb%7CEFC42828%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090561%7Cgb%7CEFC44212%2E1%7C.for.122519-125055.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.122519-125055.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.122519-125055.gi%7C284090561%7Cgb%7CEFC44212%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096574%7Cgb%7CEFC50202%2E1%7C.for.127726-128828.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.127726-128828.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.127726-128828.gi%7C284096574%7Cgb%7CEFC50202%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088808%7Cgb%7CEFC42469%2E1%7C.for.130514-133218.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.130514-133218.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.130514-133218.gi%7C284088808%7Cgb%7CEFC42469%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084220%7Cgb%7CEFC37915%2E1%7C.for.132499-135658.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.132499-135658.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.132499-135658.gi%7C284084220%7Cgb%7CEFC37915%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095359%7Cgb%7CEFC48990%2E1%7C.for.138504-139857.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.138504-139857.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.138504-139857.gi%7C284095359%7Cgb%7CEFC48990%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091769%7Cgb%7CEFC45414%2E1%7C.for.141348-145005.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.141348-145005.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.141348-145005.gi%7C284091769%7Cgb%7CEFC45414%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085225%7Cgb%7CEFC38911%2E1%7C.for.158649-159862.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.158649-159862.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.158649-159862.gi%7C284085225%7Cgb%7CEFC38911%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081490%7Cgb%7CEFC35474%2E1%7C.for.160404-162051.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.160404-162051.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.160404-162051.gi%7C284081490%7Cgb%7CEFC35474%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092821%7Cgb%7CEFC46461%2E1%7C.for.162694-166950.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162694-166950.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162694-166950.gi%7C284092821%7Cgb%7CEFC46461%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083022%7Cgb%7CEFC36730%2E1%7C.for.162712-166962.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162712-166962.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162712-166962.gi%7C284083022%7Cgb%7CEFC36730%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093552%7Cgb%7CEFC47189%2E1%7C.for.162712-167013.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162712-167013.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162712-167013.gi%7C284093552%7Cgb%7CEFC47189%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085695%7Cgb%7CEFC39377%2E1%7C.for.162712-167037.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162712-167037.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162712-167037.gi%7C284085695%7Cgb%7CEFC39377%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085694%7Cgb%7CEFC39376%2E1%7C.for.162712-167037.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162712-167037.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162712-167037.gi%7C284085694%7Cgb%7CEFC39376%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082133%7Cgb%7CEFC35904%2E1%7C.for.165317-166962.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.165317-166962.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.165317-166962.gi%7C284082133%7Cgb%7CEFC35904%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086144%7Cgb%7CEFC39822%2E1%7C.for.169433-170394.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.169433-170394.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.169433-170394.gi%7C284086144%7Cgb%7CEFC39822%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090570%7Cgb%7CEFC44221%2E1%7C.for.178423-180014.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.178423-180014.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.178423-180014.gi%7C284090570%7Cgb%7CEFC44221%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 26 ...processing 1 of 26 ...processing 2 of 26 ...processing 3 of 26 ...processing 4 of 26 ...processing 5 of 26 ...processing 6 of 26 ...processing 7 of 26 ...processing 8 of 26 ...processing 9 of 26 ...processing 10 of 26 ...processing 11 of 26 ...processing 12 of 26 ...processing 13 of 26 ...processing 14 of 26 ...processing 15 of 26 ...processing 16 of 26 ...processing 17 of 26 ...processing 18 of 26 ...processing 19 of 26 ...processing 20 of 26 ...processing 21 of 26 ...processing 22 of 26 ...processing 23 of 26 ...processing 24 of 26 ...processing 25 of 26 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 22 ...processing 1 of 22 ...processing 2 of 22 ...processing 3 of 22 ...processing 4 of 22 ...processing 5 of 22 ...processing 6 of 22 ...processing 7 of 22 ...processing 8 of 22 ...processing 9 of 22 ...processing 10 of 22 ...processing 11 of 22 ...processing 12 of 22 ...processing 13 of 22 ...processing 14 of 22 ...processing 15 of 22 ...processing 16 of 22 ...processing 17 of 22 ...processing 18 of 22 ...processing 19 of 22 ...processing 20 of 22 ...processing 21 of 22 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:37 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:34 now processing 0 total clusters:34 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.0-851.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.0-851.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.0-851.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.3246-4627.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.3246-4627.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.3246-4627.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.6133-7804.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.6133-7804.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.6133-7804.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.10859-11768.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.10859-11768.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.10859-11768.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.20331-21328.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.20331-21328.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.20331-21328.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.21416-22323.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.21416-22323.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.21416-22323.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.26495-27753.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.26495-27753.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.26495-27753.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.30953-32743.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.30953-32743.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.30953-32743.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.49888-57927.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.49888-57927.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.49888-57927.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.58059-59506.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.58059-59506.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.58059-59506.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.60706-62939.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.60706-62939.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.60706-62939.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.65915-71109.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.65915-71109.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.65915-71109.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.74349-75305.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.74349-75305.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.74349-75305.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.77994-79234.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.77994-79234.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.77994-79234.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.81540-82885.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.81540-82885.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.81540-82885.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.86130-88294.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.86130-88294.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.86130-88294.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.102980-104020.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.102980-104020.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.102980-104020.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.109091-110054.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.109091-110054.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.109091-110054.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.117265-118571.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.117265-118571.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.117265-118571.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.126188-127407.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.126188-127407.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.126188-127407.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.130713-133076.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.130713-133076.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.130713-133076.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.138703-139657.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.138703-139657.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.138703-139657.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.140056-140933.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.140056-140933.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.140056-140933.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.141442-144805.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.141442-144805.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.141442-144805.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.159161-159974.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.159161-159974.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.159161-159974.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.160603-162588.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.160603-162588.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.160603-162588.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.162730-167055.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.162730-167055.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.162730-167055.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.173262-178013.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.173262-178013.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.173262-178013.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.179584-180468.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.179584-180468.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.179584-180468.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.5149-6077.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.5149-6077.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.5149-6077.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.13684-17094.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.13684-17094.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.13684-17094.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.19365-20357.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.19365-20357.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.19365-20357.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.23871-24779.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.23871-24779.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.23871-24779.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.29606-31191.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.29606-31191.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.29606-31191.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.32530-35441.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.32530-35441.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.32530-35441.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.36060-44551.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.36060-44551.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.36060-44551.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.59509-60393.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.59509-60393.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.59509-60393.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.64927-65860.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.64927-65860.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.64927-65860.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.70926-71886.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.70926-71886.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.70926-71886.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.72298-73718.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.72298-73718.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.72298-73718.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/40_0.78887-79787.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/40_0.78887-79787.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/40_0.78887-79787.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/41_0.82639-83781.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/41_0.82639-83781.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/41_0.82639-83781.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/42_0.89389-90356.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/42_0.89389-90356.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/42_0.89389-90356.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/43_0.96732-98337.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/43_0.96732-98337.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/43_0.96732-98337.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/44_0.105759-106784.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/44_0.105759-106784.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/44_0.105759-106784.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/45_0.110288-111257.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/45_0.110288-111257.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/45_0.110288-111257.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/46_0.111999-112956.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/46_0.111999-112956.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/46_0.111999-112956.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/47_0.114389-115483.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/47_0.114389-115483.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/47_0.114389-115483.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/48_0.115546-117280.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/48_0.115546-117280.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/48_0.115546-117280.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/49_0.118211-119137.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/49_0.118211-119137.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/49_0.118211-119137.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/50_0.122718-125556.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/50_0.122718-125556.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/50_0.122718-125556.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/51_0.127723-128856.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/51_0.127723-128856.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/51_0.127723-128856.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/52_0.132688-135521.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/52_0.132688-135521.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/52_0.132688-135521.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/53_0.145209-146243.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/53_0.145209-146243.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/53_0.145209-146243.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/54_0.178622-179841.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/54_0.178622-179841.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/54_0.178622-179841.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C23 Length: 251560 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:35 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:53 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:38 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:63 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:51 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:49 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:39 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:41 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:43 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:50 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:7 current j:0 j_size:7 current j:1 j_size:7 current j:2 j_size:7 current j:3 j_size:7 current j:4 j_size:7 current j:5 j_size:7 current j:6 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C23.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C23.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:10 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:14 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:9 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:10 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:11 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:12 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12272%7Chypothetical.for.6337-7736.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.6337-7736.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.6337-7736.Ar_EST_120301b_c12272%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18243%7Cdk907995.for.9153-10368.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.9153-10368.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.9153-10368.Ar_EST_120301b_c18243%7Cdk907995.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7871%7Cdc598359.for.10778-12259.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.10778-12259.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.10778-12259.Ar_EST_120301b_c7871%7Cdc598359.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c875%7Cglucosamine--fructose-6-phosphate.for.10913-12823.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.10913-12823.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.10913-12823.Ar_EST_120301b_c875%7Cglucosamine--fructose-6-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c273%7Cpentatricopeptide.for.11344-13207.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.11344-13207.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.11344-13207.Ar_EST_120301b_c273%7Cpentatricopeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19019%7C8807_100277_12.for.10785-12317.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.10785-12317.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.10785-12317.Ar_EST_120301b_c19019%7C8807_100277_12.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3513%7Cprotein.for.12916-15044.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.12916-15044.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.12916-15044.Ar_EST_120301b_c3513%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11592%7C294772423.for.14264-15572.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.14264-15572.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.14264-15572.Ar_EST_120301b_c11592%7C294772423.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6938%7Cpredicted.for.19566-20958.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.19566-20958.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.19566-20958.Ar_EST_120301b_rep_c6938%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10805%7Cagencourt_26185347.for.30415-32475.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.30415-32475.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.30415-32475.Ar_EST_120301b_c10805%7Cagencourt_26185347.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4838%7Ckeratin.for.32416-34153.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32416-34153.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32416-34153.Ar_EST_120301b_rep_c4838%7Ckeratin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6302%7Ckeratin.for.32987-34348.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32987-34348.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32987-34348.Ar_EST_120301b_rep_c6302%7Ckeratin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5667%7Ckeratin.for.32077-34405.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32077-34405.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32077-34405.Ar_EST_120301b_rep_c5667%7Ckeratin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18263%7Cpredicted.for.32928-34003.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32928-34003.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32928-34003.Ar_EST_120301b_rep_c18263%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6913%7Csmc.for.32076-33516.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32076-33516.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32076-33516.Ar_EST_120301b_rep_c6913%7Csmc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15759%7Csplicing.for.38497-39943.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.38497-39943.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.38497-39943.Ar_EST_120301b_c15759%7Csplicing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1630%7Cprotein.for.39271-41325.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.39271-41325.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.39271-41325.Ar_EST_120301b_c1630%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c983%7Csplicing.for.40524-41827.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.40524-41827.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.40524-41827.Ar_EST_120301b_c983%7Csplicing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15568%7Cspliceosome-associated.for.40292-41528.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.40292-41528.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.40292-41528.Ar_EST_120301b_c15568%7Cspliceosome-associated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11774%7Csplicing.for.41071-42349.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41071-42349.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41071-42349.Ar_EST_120301b_c11774%7Csplicing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3650%7Crsc.for.46681-50017.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.46681-50017.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.46681-50017.Ar_EST_120301b_c3650%7Crsc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9332%7Cswi.for.49559-51021.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.49559-51021.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.49559-51021.Ar_EST_120301b_c9332%7Cswi.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11295%7Cbeach.for.50529-52094.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.50529-52094.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.50529-52094.Ar_EST_120301b_c11295%7Cbeach.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10349%7Cbeach.for.51738-53143.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.51738-53143.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.51738-53143.Ar_EST_120301b_c10349%7Cbeach.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18164%7Cneurobeachin-like.for.52474-53990.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.52474-53990.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.52474-53990.Ar_EST_120301b_c18164%7Cneurobeachin-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1782%7Cneurobeachin-like.for.54265-55844.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.54265-55844.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.54265-55844.Ar_EST_120301b_c1782%7Cneurobeachin-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2203%7Cbeach.for.55572-57353.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.55572-57353.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.55572-57353.Ar_EST_120301b_c2203%7Cbeach.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11079%7Cprotein.for.57324-58683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.57324-58683.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.57324-58683.Ar_EST_120301b_c11079%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1313%7Cvacuolar.for.57990-59334.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.57990-59334.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.57990-59334.Ar_EST_120301b_c1313%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c145%7C40s.for.58792-60295.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.58792-60295.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.58792-60295.Ar_EST_120301b_c145%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c936%7Chypothetical.for.59809-61596.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.59809-61596.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.59809-61596.Ar_EST_120301b_c936%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15515%7Cprotein.for.60545-61895.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.60545-61895.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.60545-61895.Ar_EST_120301b_c15515%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14904%7Cmetal-dependent.for.62278-63609.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.62278-63609.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.62278-63609.Ar_EST_120301b_c14904%7Cmetal-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10329%7Cav385603.for.63143-64309.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.63143-64309.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.63143-64309.Ar_EST_120301b_c10329%7Cav385603.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19262%7Csignal.for.62864-64138.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.62864-64138.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.62864-64138.Ar_EST_120301b_c19262%7Csignal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1637%7Cdna.for.66879-69168.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.66879-69168.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.66879-69168.Ar_EST_120301b_c1637%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14997%7Cdna.for.68365-69679.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.68365-69679.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.68365-69679.Ar_EST_120301b_c14997%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13721%7CHypothetical.for.70080-71563.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.70080-71563.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.70080-71563.Ar_EST_120301b_c13721%7CHypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3375%7Crelated.for.70835-72195.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.70835-72195.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.70835-72195.Ar_EST_120301b_c3375%7Crelated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6563%7Cmeloidogyne.for.71999-73500.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.71999-73500.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.71999-73500.Ar_EST_120301b_rep_c6563%7Cmeloidogyne.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13629%7Cpredicted.for.72275-73348.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.72275-73348.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.72275-73348.Ar_EST_120301b_rep_c13629%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20446%7C40s.for.72275-73499.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.72275-73499.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.72275-73499.Ar_EST_120301b_rep_c20446%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10109%7Ctrc_19-.for.72002-73566.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.72002-73566.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.72002-73566.Ar_EST_120301b_rep_c10109%7Ctrc_19-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig430%7Cssalnwh504101.for.72000-73472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.72000-73472.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.72000-73472.120301b_Contig430%7Cssalnwh504101.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig229%7Cnucleotide.for.73892-76171.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.73892-76171.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.73892-76171.120301b_Contig229%7Cnucleotide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2043%7Cnucleotide.for.75653-76987.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.75653-76987.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.75653-76987.Ar_EST_120301b_c2043%7Cnucleotide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8983%7C---NA---.for.76553-78232.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.76553-78232.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.76553-78232.Ar_EST_120301b_c8983%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12405%7Cwd40.for.77496-78867.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.77496-78867.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.77496-78867.Ar_EST_120301b_c12405%7Cwd40.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4427%7Cglk1_triva.for.80928-83103.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.80928-83103.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.80928-83103.Ar_EST_120301b_rep_c4427%7Cglk1_triva.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17133%7C---NA---.for.85095-86344.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.85095-86344.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.85095-86344.Ar_EST_120301b_c17133%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7928%7Cig.for.86040-87963.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.86040-87963.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.86040-87963.Ar_EST_120301b_c7928%7Cig.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12649%7Cprotein.for.87787-89098.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.87787-89098.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.87787-89098.Ar_EST_120301b_c12649%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2907%7Cubiquitin.for.90189-92656.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.90189-92656.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.90189-92656.Ar_EST_120301b_c2907%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2207%7Cubiquitin.for.92015-93326.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.92015-93326.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.92015-93326.Ar_EST_120301b_c2207%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8690%7Chypothetical.for.93831-95434.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.93831-95434.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.93831-95434.Ar_EST_120301b_c8690%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1542%7Chypothetical.for.93572-95544.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.93572-95544.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.93572-95544.Ar_EST_120301b_c1542%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c307%7Cpotassium.for.97783-99799.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.97783-99799.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.97783-99799.Ar_EST_120301b_c307%7Cpotassium.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1137%7Cpotassium.for.99027-100692.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.99027-100692.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.99027-100692.120301b_Contig1137%7Cpotassium.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1107%7Crubrerythrin.for.102806-104060.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.102806-104060.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.102806-104060.Ar_EST_120301b_c1107%7Crubrerythrin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9961%7Clv_hc_ra061h09f.for.103467-105337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.103467-105337.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.103467-105337.Ar_EST_120301b_c9961%7Clv_hc_ra061h09f.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3345%7Cmdfw.for.104538-106152.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.104538-106152.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.104538-106152.Ar_EST_120301b_c3345%7Cmdfw.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2319%7Cl-aspartate.for.105561-107091.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.105561-107091.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.105561-107091.Ar_EST_120301b_c2319%7Cl-aspartate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17231%7Cl-aspartate.for.105988-107295.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.105988-107295.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.105988-107295.Ar_EST_120301b_c17231%7Cl-aspartate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6462%7Cheat.for.108680-110085.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.108680-110085.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.108680-110085.Ar_EST_120301b_rep_c6462%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9388%7Cribosomal.for.108641-109814.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.108641-109814.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.108641-109814.Ar_EST_120301b_rep_c9388%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5623%7Cprotein.for.108638-110171.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.108638-110171.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.108638-110171.Ar_EST_120301b_rep_c5623%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13361%7Crasgtpase-activating.for.108910-110082.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.108910-110082.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.108910-110082.Ar_EST_120301b_rep_c13361%7Crasgtpase-activating.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14704%7Ccbht.for.110606-111814.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.110606-111814.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.110606-111814.Ar_EST_120301b_c14704%7Ccbht.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9096%7Cshort-chain.for.113730-115106.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.113730-115106.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.113730-115106.Ar_EST_120301b_c9096%7Cshort-chain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c617%7Cshort-chain.for.114369-115855.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.114369-115855.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.114369-115855.Ar_EST_120301b_c617%7Cshort-chain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11555%7Ccondensin.for.115828-117655.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.115828-117655.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.115828-117655.Ar_EST_120301b_c11555%7Ccondensin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4730%7C2-oxoglutarate.for.118383-120710.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.118383-120710.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.118383-120710.Ar_EST_120301b_rep_c4730%7C2-oxoglutarate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9087%7C2-oxoglutarate.for.119310-120836.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.119310-120836.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.119310-120836.Ar_EST_120301b_rep_c9087%7C2-oxoglutarate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c377%7Coxoglutarate.for.119770-121524.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.119770-121524.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.119770-121524.Ar_EST_120301b_c377%7Coxoglutarate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig86%7Coxoglutarate.for.120319-122186.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.120319-122186.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.120319-122186.120301b_Contig86%7Coxoglutarate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9136%7C---NA---.for.121984-123442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.121984-123442.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.121984-123442.Ar_EST_120301b_c9136%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15662%7C04bax.for.123453-124718.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.123453-124718.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.123453-124718.Ar_EST_120301b_c15662%7C04bax.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10569%7C---NA---.for.124646-125909.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.124646-125909.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.124646-125909.Ar_EST_120301b_c10569%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9106%7Cest1049462.for.126134-128669.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.126134-128669.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.126134-128669.Ar_EST_120301b_c9106%7Cest1049462.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig958%7Cwd.for.128313-130118.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.128313-130118.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.128313-130118.120301b_Contig958%7Cwd.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7976%7Cvacuolar.for.129482-131502.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.129482-131502.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.129482-131502.Ar_EST_120301b_c7976%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4653%7Cloc496093.for.132642-134563.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.132642-134563.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.132642-134563.Ar_EST_120301b_rep_c4653%7Cloc496093.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14445%7Cguanine.for.132861-133899.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.132861-133899.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.132861-133899.Ar_EST_120301b_rep_c14445%7Cguanine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7186%7Cloc496093.for.132642-134374.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.132642-134374.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.132642-134374.Ar_EST_120301b_rep_c7186%7Cloc496093.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13603%7Cnuclear.for.133797-134929.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.133797-134929.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.133797-134929.Ar_EST_120301b_c13603%7Cnuclear.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16532%7Coxax-.for.134229-135699.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.134229-135699.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.134229-135699.Ar_EST_120301b_c16532%7Coxax-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5790%7Ca.for.137376-138875.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.137376-138875.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.137376-138875.Ar_EST_120301b_rep_c5790%7Ca.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig310%7Cheat.for.135898-138850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.135898-138850.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.135898-138850.120301b_Contig310%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12450%7C---NA---.for.138995-140087.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.138995-140087.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.138995-140087.Ar_EST_120301b_c12450%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7908%7Cdomain-containing.for.141024-142430.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.141024-142430.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.141024-142430.Ar_EST_120301b_c7908%7Cdomain-containing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7834%7Cg-protein.for.142400-144309.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142400-144309.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142400-144309.Ar_EST_120301b_c7834%7Cg-protein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19743%7Cguanine.for.143080-144247.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.143080-144247.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.143080-144247.Ar_EST_120301b_c19743%7Cguanine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13715%7Cglycoprotein.for.144427-145703.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.144427-145703.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.144427-145703.Ar_EST_120301b_rep_c13715%7Cglycoprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10950%7Cdna.for.146053-147455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.146053-147455.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.146053-147455.Ar_EST_120301b_c10950%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14111%7Cdna.for.146865-148324.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.146865-148324.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.146865-148324.Ar_EST_120301b_c14111%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig531%7Cprotein.for.147650-149098.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.147650-149098.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.147650-149098.120301b_Contig531%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig634%7Ccr529494.for.150372-151811.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.150372-151811.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.150372-151811.120301b_Contig634%7Ccr529494.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7634%7Ccr529494.for.150541-151631.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.150541-151631.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.150541-151631.Ar_EST_120301b_rep_c7634%7Ccr529494.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7240%7Ccr529494.for.150235-151891.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.150235-151891.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.150235-151891.Ar_EST_120301b_rep_c7240%7Ccr529494.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9367%7C---NA---.for.152138-153239.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.152138-153239.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.152138-153239.Ar_EST_120301b_c9367%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16367%7C4-hydroxyphenylpyruvate.for.153226-154544.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.153226-154544.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.153226-154544.Ar_EST_120301b_c16367%7C4-hydroxyphenylpyruvate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c854%7C4-hydroxyphenylpyruvate.for.152627-154115.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.152627-154115.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.152627-154115.Ar_EST_120301b_c854%7C4-hydroxyphenylpyruvate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6215%7Crna.for.159799-161632.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.159799-161632.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.159799-161632.Ar_EST_120301b_rep_c6215%7Crna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5579%7Crna.for.159768-161642.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.159768-161642.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.159768-161642.Ar_EST_120301b_rep_c5579%7Crna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14244%7Crna.for.160284-161614.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.160284-161614.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.160284-161614.Ar_EST_120301b_rep_c14244%7Crna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10333%7Cacyl-.for.159869-161044.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.159869-161044.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.159869-161044.Ar_EST_120301b_c10333%7Cacyl-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1371%7Crac.for.167294-169987.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.167294-169987.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.167294-169987.120301b_Contig1371%7Crac.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17331%7Cnedd8.for.167035-168118.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.167035-168118.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.167035-168118.Ar_EST_120301b_c17331%7Cnedd8.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10519%7Cest.for.169349-170698.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.169349-170698.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.169349-170698.Ar_EST_120301b_c10519%7Cest.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4191%7Csuccinyl-.for.170904-172812.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.170904-172812.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.170904-172812.Ar_EST_120301b_rep_c4191%7Csuccinyl-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4684%7Cmeloidogyne.for.172079-173713.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.172079-173713.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.172079-173713.Ar_EST_120301b_rep_c4684%7Cmeloidogyne.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15717%7Culva.for.172475-173715.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.172475-173715.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.172475-173715.Ar_EST_120301b_rep_c15717%7Culva.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9614%7Ccohesin.for.182031-184093.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.182031-184093.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.182031-184093.Ar_EST_120301b_c9614%7Ccohesin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17764%7C---NA---.for.183901-185011.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.183901-185011.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.183901-185011.Ar_EST_120301b_c17764%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1778%7Chypothetical.for.183763-185094.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.183763-185094.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.183763-185094.Ar_EST_120301b_c1778%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14507%7Chypothetical.for.184948-186185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.184948-186185.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.184948-186185.Ar_EST_120301b_c14507%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9088%7Cdiguanylate.for.185779-187336.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.185779-187336.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.185779-187336.Ar_EST_120301b_c9088%7Cdiguanylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1730%7Cleucine-rich.for.188767-190142.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.188767-190142.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.188767-190142.Ar_EST_120301b_c1730%7Cleucine-rich.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3669%7Ccentrosome-.for.189857-191499.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.189857-191499.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.189857-191499.Ar_EST_120301b_c3669%7Ccentrosome-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14832%7C---NA---.for.190095-191135.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.190095-191135.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.190095-191135.Ar_EST_120301b_rep_c14832%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15417%7Chypothetical.for.189764-191335.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.189764-191335.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.189764-191335.Ar_EST_120301b_c15417%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9815%7Cpre-mrna-splicing.for.191755-193413.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.191755-193413.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.191755-193413.Ar_EST_120301b_c9815%7Cpre-mrna-splicing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2402%7Calpha-l-glutamate.for.192780-194621.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.192780-194621.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.192780-194621.Ar_EST_120301b_c2402%7Calpha-l-glutamate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2515%7Cfq080129.for.200643-201890.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.200643-201890.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.200643-201890.Ar_EST_120301b_c2515%7Cfq080129.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16244%7Cpredicted.for.203700-205068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.203700-205068.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.203700-205068.Ar_EST_120301b_c16244%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig564%7Calg-2.for.204341-206843.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204341-206843.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204341-206843.120301b_Contig564%7Calg-2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16467%7Cfr764264.for.204297-205408.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204297-205408.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204297-205408.Ar_EST_120301b_rep_c16467%7Cfr764264.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19160%7Crho.for.204343-205515.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204343-205515.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204343-205515.Ar_EST_120301b_rep_c19160%7Crho.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig577%7Calg-2.for.204322-207530.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204322-207530.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204322-207530.120301b_Contig577%7Calg-2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig646%7C3-hydroxyisobutyrate.for.210928-212168.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.210928-212168.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.210928-212168.120301b_Contig646%7C3-hydroxyisobutyrate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7959%7C3-hydroxyisobutyrate.for.210928-212620.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.210928-212620.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.210928-212620.Ar_EST_120301b_c7959%7C3-hydroxyisobutyrate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1520%7Cring.for.212862-214368.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.212862-214368.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.212862-214368.Ar_EST_120301b_c1520%7Cring.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17963%7Cribonuclease.for.213718-215087.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.213718-215087.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.213718-215087.Ar_EST_120301b_c17963%7Cribonuclease.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15655%7Chydroxyacylglutathione.for.217920-219067.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.217920-219067.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.217920-219067.Ar_EST_120301b_c15655%7Chydroxyacylglutathione.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1032%7Cbar.for.217720-219194.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.217720-219194.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.217720-219194.Ar_EST_120301b_c1032%7Cbar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3714%7Cpredicted.for.219865-221920.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.219865-221920.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.219865-221920.Ar_EST_120301b_c3714%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9360%7Cpectin.for.222677-223963.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.222677-223963.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.222677-223963.Ar_EST_120301b_c9360%7Cpectin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14957%7C---NA---.for.223737-224678.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.223737-224678.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.223737-224678.Ar_EST_120301b_c14957%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16305%7Ccu718678.for.227564-228814.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.227564-228814.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.227564-228814.Ar_EST_120301b_c16305%7Ccu718678.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15895%7Cgm-c1079.for.231109-232430.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.231109-232430.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.231109-232430.Ar_EST_120301b_c15895%7Cgm-c1079.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15734%7Celectron.for.237011-238483.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.237011-238483.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.237011-238483.Ar_EST_120301b_c15734%7Celectron.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig277%7Celectron-transferring-flavoprotein.for.235927-238334.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.235927-238334.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.235927-238334.120301b_Contig277%7Celectron-transferring-flavoprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14121%7Csme00002039.for.238974-239931.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.238974-239931.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.238974-239931.Ar_EST_120301b_rep_c14121%7Csme00002039.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4568%7Chypothetical.for.238239-240574.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.238239-240574.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.238239-240574.Ar_EST_120301b_rep_c4568%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7127%7Chypothetical.for.238312-239951.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.238312-239951.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.238312-239951.Ar_EST_120301b_rep_c7127%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13716%7Cpossible.for.239125-240151.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.239125-240151.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.239125-240151.Ar_EST_120301b_rep_c13716%7Cpossible.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13710%7C---NA---.for.239844-240691.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.239844-240691.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.239844-240691.Ar_EST_120301b_c13710%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig398%7Cphage.for.240269-242260.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.240269-242260.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.240269-242260.120301b_Contig398%7Cphage.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8397%7Cprotein.for.241758-243744.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.241758-243744.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.241758-243744.Ar_EST_120301b_c8397%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8110%7Clongevity.for.242976-244909.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.242976-244909.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.242976-244909.Ar_EST_120301b_c8110%7Clongevity.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13752%7Ctranscriptional.for.248009-249354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.248009-249354.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.248009-249354.Ar_EST_120301b_rep_c13752%7Ctranscriptional.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15531%7Ctranscriptional.for.247898-249032.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.247898-249032.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.247898-249032.Ar_EST_120301b_c15531%7Ctranscriptional.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1651%7Ctpr.for.248173-249572.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.248173-249572.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.248173-249572.Ar_EST_120301b_c1651%7Ctpr.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c720%7Ctpr.for.247246-248705.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.247246-248705.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.247246-248705.Ar_EST_120301b_c720%7Ctpr.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11668%7Ccce.for.248728-249756.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.248728-249756.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.248728-249756.Ar_EST_120301b_c11668%7Ccce.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17777%7Cfungal.for.249599-250715.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.249599-250715.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.249599-250715.Ar_EST_120301b_c17777%7Cfungal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13808%7Ccls.for.249917-251189.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.249917-251189.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.249917-251189.Ar_EST_120301b_c13808%7Ccls.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 total clusters:97 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:89 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:71 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:60 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:85 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:79 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:74 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:70 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:82 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:72 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:83 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089856%7Cgb%7CEFC43511%2E1%7C.for.15123-17086.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.15123-17086.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.15123-17086.gi%7C284089856%7Cgb%7CEFC43511%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094339%7Cgb%7CEFC47973%2E1%7C.for.16848-18751.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.16848-18751.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.16848-18751.gi%7C284094339%7Cgb%7CEFC47973%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088678%7Cgb%7CEFC42340%2E1%7C.for.16848-18457.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.16848-18457.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.16848-18457.gi%7C284088678%7Cgb%7CEFC42340%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094128%7Cgb%7CEFC47763%2E1%7C.for.18785-20125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18785-20125.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18785-20125.gi%7C284094128%7Cgb%7CEFC47763%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093755%7Cgb%7CEFC47392%2E1%7C.for.18785-20125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18785-20125.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18785-20125.gi%7C284093755%7Cgb%7CEFC47392%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084671%7Cgb%7CEFC38361%2E1%7C.for.18785-20125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18785-20125.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18785-20125.gi%7C284084671%7Cgb%7CEFC38361%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087410%7Cgb%7CEFC41080%2E1%7C.for.18821-20125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18821-20125.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18821-20125.gi%7C284087410%7Cgb%7CEFC41080%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095769%7Cgb%7CEFC49399%2E1%7C.for.18767-20125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18767-20125.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18767-20125.gi%7C284095769%7Cgb%7CEFC49399%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088777%7Cgb%7CEFC42438%2E1%7C.for.18821-20125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18821-20125.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18821-20125.gi%7C284088777%7Cgb%7CEFC42438%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096300%7Cgb%7CEFC49928%2E1%7C.for.20271-31022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.20271-31022.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.20271-31022.gi%7C284096300%7Cgb%7CEFC49928%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.for.35827-36896.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.35827-36896.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.35827-36896.gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093627%7Cgb%7CEFC47264%2E1%7C.for.35878-38883.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.35878-38883.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.35878-38883.gi%7C284093627%7Cgb%7CEFC47264%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093553%7Cgb%7CEFC47190%2E1%7C.for.38660-42327.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.38660-42327.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.38660-42327.gi%7C284093553%7Cgb%7CEFC47190%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088699%7Cgb%7CEFC42361%2E1%7C.for.41842-43571.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41842-43571.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41842-43571.gi%7C284088699%7Cgb%7CEFC42361%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093661%7Cgb%7CEFC47298%2E1%7C.for.41803-44573.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41803-44573.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41803-44573.gi%7C284093661%7Cgb%7CEFC47298%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081561%7Cgb%7CEFC35518%2E1%7C.for.41782-43508.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41782-43508.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41782-43508.gi%7C284081561%7Cgb%7CEFC35518%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082242%7Cgb%7CEFC35988%2E1%7C.for.41800-43481.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41800-43481.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41800-43481.gi%7C284082242%7Cgb%7CEFC35988%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088654%7Cgb%7CEFC42316%2E1%7C.for.41833-43508.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41833-43508.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41833-43508.gi%7C284088654%7Cgb%7CEFC42316%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096156%7Cgb%7CEFC49785%2E1%7C.for.41836-43487.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41836-43487.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41836-43487.gi%7C284096156%7Cgb%7CEFC49785%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096936%7Cgb%7CEFC50563%2E1%7C.for.47476-49712.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.47476-49712.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.47476-49712.gi%7C284096936%7Cgb%7CEFC50563%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095549%7Cgb%7CEFC49179%2E1%7C.for.47515-49742.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.47515-49742.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.47515-49742.gi%7C284095549%7Cgb%7CEFC49179%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093648%7Cgb%7CEFC47285%2E1%7C.for.45949-50849.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.45949-50849.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.45949-50849.gi%7C284093648%7Cgb%7CEFC47285%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095906%7Cgb%7CEFC49535%2E1%7C.for.47530-49751.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.47530-49751.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.47530-49751.gi%7C284095906%7Cgb%7CEFC49535%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087958%7Cgb%7CEFC41624%2E1%7C.for.47503-49751.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.47503-49751.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.47503-49751.gi%7C284087958%7Cgb%7CEFC41624%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088520%7Cgb%7CEFC42183%2E1%7C.for.51477-53404.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.51477-53404.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.51477-53404.gi%7C284088520%7Cgb%7CEFC42183%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093550%7Cgb%7CEFC47187%2E1%7C.for.61571-62913.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.61571-62913.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.61571-62913.gi%7C284093550%7Cgb%7CEFC47187%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095323%7Cgb%7CEFC48954%2E1%7C.for.62265-63643.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.62265-63643.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.62265-63643.gi%7C284095323%7Cgb%7CEFC48954%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083272%7Cgb%7CEFC36977%2E1%7C.for.67536-70556.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.67536-70556.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.67536-70556.gi%7C284083272%7Cgb%7CEFC36977%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082602%7Cgb%7CEFC36317%2E1%7C.for.66036-69451.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.66036-69451.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.66036-69451.gi%7C284082602%7Cgb%7CEFC36317%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094585%7Cgb%7CEFC48219%2E1%7C.for.80675-81717.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.80675-81717.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.80675-81717.gi%7C284094585%7Cgb%7CEFC48219%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086165%7Cgb%7CEFC39843%2E1%7C.for.80961-82908.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.80961-82908.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.80961-82908.gi%7C284086165%7Cgb%7CEFC39843%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095450%7Cgb%7CEFC49081%2E1%7C.for.90632-92652.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.90632-92652.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.90632-92652.gi%7C284095450%7Cgb%7CEFC49081%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096532%7Cgb%7CEFC50160%2E1%7C.for.102826-104105.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.102826-104105.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.102826-104105.gi%7C284096532%7Cgb%7CEFC50160%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096604%7Cgb%7CEFC50232%2E1%7C.for.105563-107235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.105563-107235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.105563-107235.gi%7C284096604%7Cgb%7CEFC50232%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081521%7Cgb%7CEFC35491%2E1%7C.for.111090-112204.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.111090-112204.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.111090-112204.gi%7C284081521%7Cgb%7CEFC35491%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084639%7Cgb%7CEFC38329%2E1%7C.for.111030-113400.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.111030-113400.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.111030-113400.gi%7C284084639%7Cgb%7CEFC38329%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085362%7Cgb%7CEFC39046%2E1%7C.for.110985-113445.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.110985-113445.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.110985-113445.gi%7C284085362%7Cgb%7CEFC39046%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083208%7Cgb%7CEFC36914%2E1%7C.for.110076-113538.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.110076-113538.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.110076-113538.gi%7C284083208%7Cgb%7CEFC36914%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094695%7Cgb%7CEFC48328%2E1%7C.for.118409-122010.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.118409-122010.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.118409-122010.gi%7C284094695%7Cgb%7CEFC48328%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095109%7Cgb%7CEFC48741%2E1%7C.for.132648-134686.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.132648-134686.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.132648-134686.gi%7C284095109%7Cgb%7CEFC48741%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086161%7Cgb%7CEFC39839%2E1%7C.for.135931-138842.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.135931-138842.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.135931-138842.gi%7C284086161%7Cgb%7CEFC39839%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096519%7Cgb%7CEFC50147%2E1%7C.for.136030-138848.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.136030-138848.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.136030-138848.gi%7C284096519%7Cgb%7CEFC50147%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096247%7Cgb%7CEFC49875%2E1%7C.for.135931-138797.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.135931-138797.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.135931-138797.gi%7C284096247%7Cgb%7CEFC49875%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C25986841%7Cgb%7CAAM93756%2E1%7C.for.136051-138770.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.136051-138770.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.136051-138770.gi%7C25986841%7Cgb%7CAAM93756%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092652%7Cgb%7CEFC46293%2E1%7C.for.142341-144069.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142341-144069.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142341-144069.gi%7C284092652%7Cgb%7CEFC46293%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089938%7Cgb%7CEFC43592%2E1%7C.for.142602-143862.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142602-143862.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142602-143862.gi%7C284089938%7Cgb%7CEFC43592%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083518%7Cgb%7CEFC37220%2E1%7C.for.142308-144015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142308-144015.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142308-144015.gi%7C284083518%7Cgb%7CEFC37220%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095980%7Cgb%7CEFC49609%2E1%7C.for.142347-144039.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142347-144039.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142347-144039.gi%7C284095980%7Cgb%7CEFC49609%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091782%7Cgb%7CEFC45427%2E1%7C.for.142755-143961.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142755-143961.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142755-143961.gi%7C284091782%7Cgb%7CEFC45427%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085503%7Cgb%7CEFC39186%2E1%7C.for.142329-143964.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142329-143964.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142329-143964.gi%7C284085503%7Cgb%7CEFC39186%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093388%7Cgb%7CEFC47026%2E1%7C.for.142922-143862.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142922-143862.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142922-143862.gi%7C284093388%7Cgb%7CEFC47026%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095754%7Cgb%7CEFC49384%2E1%7C.for.142329-144069.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142329-144069.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142329-144069.gi%7C284095754%7Cgb%7CEFC49384%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096149%7Cgb%7CEFC49778%2E1%7C.for.144795-148300.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.144795-148300.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.144795-148300.gi%7C284096149%7Cgb%7CEFC49778%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C167966176%7Cgb%7CACA13169%2E1%7C.for.146940-147964.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.146940-147964.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.146940-147964.gi%7C167966176%7Cgb%7CACA13169%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092877%7Cgb%7CEFC46517%2E1%7C.for.147667-149081.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.147667-149081.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.147667-149081.gi%7C284092877%7Cgb%7CEFC46517%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092102%7Cgb%7CEFC45745%2E1%7C.for.152591-154551.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.152591-154551.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.152591-154551.gi%7C284092102%7Cgb%7CEFC45745%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096560%7Cgb%7CEFC50188%2E1%7C.for.157271-160187.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.157271-160187.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.157271-160187.gi%7C284096560%7Cgb%7CEFC50188%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097079%7Cgb%7CEFC50706%2E1%7C.for.170945-172743.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.170945-172743.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.170945-172743.gi%7C284097079%7Cgb%7CEFC50706%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080983%7Cgb%7CEFC35253%2E1%7C.for.186873-188374.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.186873-188374.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.186873-188374.gi%7C284080983%7Cgb%7CEFC35253%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081870%7Cgb%7CEFC35710%2E1%7C.for.187245-188218.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.187245-188218.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.187245-188218.gi%7C284081870%7Cgb%7CEFC35710%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096419%7Cgb%7CEFC50047%2E1%7C.for.187029-188311.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.187029-188311.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.187029-188311.gi%7C284096419%7Cgb%7CEFC50047%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084263%7Cgb%7CEFC37957%2E1%7C.for.187056-188302.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.187056-188302.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.187056-188302.gi%7C284084263%7Cgb%7CEFC37957%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090976%7Cgb%7CEFC44625%2E1%7C.for.186795-188311.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.186795-188311.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.186795-188311.gi%7C284090976%7Cgb%7CEFC44625%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082158%7Cgb%7CEFC35924%2E1%7C.for.186795-188311.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.186795-188311.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.186795-188311.gi%7C284082158%7Cgb%7CEFC35924%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094671%7Cgb%7CEFC48304%2E1%7C.for.186999-188311.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.186999-188311.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.186999-188311.gi%7C284094671%7Cgb%7CEFC48304%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086669%7Cgb%7CEFC40344%2E1%7C.for.187257-188377.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.187257-188377.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.187257-188377.gi%7C284086669%7Cgb%7CEFC40344%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084731%7Cgb%7CEFC38420%2E1%7C.for.188731-189859.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.188731-189859.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.188731-189859.gi%7C284084731%7Cgb%7CEFC38420%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091151%7Cgb%7CEFC44799%2E1%7C.for.188758-189922.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.188758-189922.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.188758-189922.gi%7C284091151%7Cgb%7CEFC44799%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092335%7Cgb%7CEFC45977%2E1%7C.for.189761-191601.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.189761-191601.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.189761-191601.gi%7C284092335%7Cgb%7CEFC45977%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084895%7Cgb%7CEFC38583%2E1%7C.for.192664-194631.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.192664-194631.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.192664-194631.gi%7C284084895%7Cgb%7CEFC38583%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084844%7Cgb%7CEFC38533%2E1%7C.for.192772-194592.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.192772-194592.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.192772-194592.gi%7C284084844%7Cgb%7CEFC38533%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096999%7Cgb%7CEFC50626%2E1%7C.for.195482-197340.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.195482-197340.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.195482-197340.gi%7C284096999%7Cgb%7CEFC50626%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090525%7Cgb%7CEFC44176%2E1%7C.for.204484-207515.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204484-207515.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204484-207515.gi%7C284090525%7Cgb%7CEFC44176%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092835%7Cgb%7CEFC46475%2E1%7C.for.206884-208643.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.206884-208643.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.206884-208643.gi%7C284092835%7Cgb%7CEFC46475%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087254%7Cgb%7CEFC40925%2E1%7C.for.206881-208613.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.206881-208613.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.206881-208613.gi%7C284087254%7Cgb%7CEFC40925%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082482%7Cgb%7CEFC36199%2E1%7C.for.210915-212620.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.210915-212620.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.210915-212620.gi%7C284082482%7Cgb%7CEFC36199%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080970%7Cgb%7CEFC35250%2E1%7C.for.226686-227677.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.226686-227677.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.226686-227677.gi%7C284080970%7Cgb%7CEFC35250%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092584%7Cgb%7CEFC46225%2E1%7C.for.228372-230302.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.228372-230302.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.228372-230302.gi%7C284092584%7Cgb%7CEFC46225%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092876%7Cgb%7CEFC46516%2E1%7C.for.235910-238395.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.235910-238395.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.235910-238395.gi%7C284092876%7Cgb%7CEFC46516%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091153%7Cgb%7CEFC44801%2E1%7C.for.241641-243023.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.241641-243023.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.241641-243023.gi%7C284091153%7Cgb%7CEFC44801%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090946%7Cgb%7CEFC44595%2E1%7C.for.241626-243062.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.241626-243062.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.241626-243062.gi%7C284090946%7Cgb%7CEFC44595%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092322%7Cgb%7CEFC45964%2E1%7C.for.241596-243501.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.241596-243501.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.241596-243501.gi%7C284092322%7Cgb%7CEFC45964%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083025%7Cgb%7CEFC36733%2E1%7C.for.244560-245581.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.244560-245581.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.244560-245581.gi%7C284083025%7Cgb%7CEFC36733%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093562%7Cgb%7CEFC47199%2E1%7C.for.244548-245870.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.244548-245870.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.244548-245870.gi%7C284093562%7Cgb%7CEFC47199%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091741%7Cgb%7CEFC45386%2E1%7C.for.244509-245861.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.244509-245861.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.244509-245861.gi%7C284091741%7Cgb%7CEFC45386%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092533%7Cgb%7CEFC46175%2E1%7C.for.247335-249267.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.247335-249267.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.247335-249267.gi%7C284092533%7Cgb%7CEFC46175%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:36 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:29 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 2 ...processing 1 of 2 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:50 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:50 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:50 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:50 now processing 0 total clusters:50 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:50 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:50 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:50 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:59 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:59 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:59 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.9352-10168.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.9352-10168.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.9352-10168.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.14463-15372.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.14463-15372.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.14463-15372.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.18981-32275.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.18981-32275.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.18981-32275.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.38696-44373.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.38696-44373.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.38696-44373.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.46148-51894.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.46148-51894.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.46148-51894.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.61731-63443.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.61731-63443.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.61731-63443.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.70279-71363.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.70279-71363.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.70279-71363.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.80874-81517.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.80874-81517.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.80874-81517.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.86239-87767.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.86239-87767.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.86239-87767.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.90388-93132.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.90388-93132.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.90388-93132.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.99226-100492.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.99226-100492.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.99226-100492.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.103005-107100.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.103005-107100.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.103005-107100.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.108829-109885.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.108829-109885.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.108829-109885.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.116023-117455.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.116023-117455.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.116023-117455.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.142507-144109.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.142507-144109.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.142507-144109.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.146252-148124.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.146252-148124.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.146252-148124.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.150432-151691.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.150432-151691.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.150432-151691.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.152337-154351.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.152337-154351.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.152337-154351.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.167493-169791.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.167493-169791.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.167493-169791.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.183953-188177.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.183953-188177.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.183953-188177.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.189960-191401.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.189960-191401.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.189960-191401.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.195681-197140.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.195681-197140.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.195681-197140.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.203899-204868.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.203899-204868.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.203899-204868.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.213061-214168.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.213061-214168.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.213061-214168.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.217919-218994.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.217919-218994.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.217919-218994.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.222876-224478.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.222876-224478.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.222876-224478.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.228571-230102.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.228571-230102.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.228571-230102.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.231305-232448.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.231305-232448.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.231305-232448.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.238438-243544.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.238438-243544.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.238438-243544.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.247385-250515.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.247385-250515.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.247385-250515.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.6536-7536.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.6536-7536.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.6536-7536.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.10977-13017.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.10977-13017.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.10977-13017.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.13115-14844.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.13115-14844.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.13115-14844.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.17047-18257.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.17047-18257.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.17047-18257.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.32275-34205.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.32275-34205.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.32275-34205.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.36077-38683.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.36077-38683.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.36077-38683.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.51937-57153.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.51937-57153.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.51937-57153.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.57523-59134.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.57523-59134.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.57523-59134.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.60008-61695.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.60008-61695.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.60008-61695.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.63036-64109.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.63036-64109.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.63036-64109.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/40_0.66235-70356.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/40_0.66235-70356.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/40_0.66235-70356.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/41_0.71031-71995.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/41_0.71031-71995.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/41_0.71031-71995.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/42_0.72195-73370.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/42_0.72195-73370.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/42_0.72195-73370.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/43_0.74091-78667.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/43_0.74091-78667.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/43_0.74091-78667.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/44_0.81127-82903.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/44_0.81127-82903.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/44_0.81127-82903.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/45_0.85294-86152.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/45_0.85294-86152.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/45_0.85294-86152.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/46_0.87986-88898.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/46_0.87986-88898.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/46_0.87986-88898.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/47_0.93752-95344.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/47_0.93752-95344.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/47_0.93752-95344.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/48_0.110275-115655.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/48_0.110275-115655.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/48_0.110275-115655.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/49_0.118582-121986.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/49_0.118582-121986.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/49_0.118582-121986.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/50_0.122183-131308.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/50_0.122183-131308.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/50_0.122183-131308.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/51_0.132669-135499.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/51_0.132669-135499.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/51_0.132669-135499.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/52_0.136097-138682.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/52_0.136097-138682.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/52_0.136097-138682.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/53_0.141223-142230.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/53_0.141223-142230.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/53_0.141223-142230.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/54_0.147866-148881.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/54_0.147866-148881.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/54_0.147866-148881.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/55_0.157470-159987.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/55_0.157470-159987.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/55_0.157470-159987.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/56_0.159998-161432.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/56_0.159998-161432.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/56_0.159998-161432.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/57_0.167005-167926.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/57_0.167005-167926.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/57_0.167005-167926.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/58_0.169548-170498.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/58_0.169548-170498.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/58_0.169548-170498.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/59_0.171144-172543.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/59_0.171144-172543.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/59_0.171144-172543.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/60_0.188930-189942.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/60_0.188930-189942.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/60_0.188930-189942.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/61_0.191954-194431.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/61_0.191954-194431.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/61_0.191954-194431.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/62_0.200842-201690.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/62_0.200842-201690.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/62_0.200842-201690.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/63_0.204518-208443.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/63_0.204518-208443.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/63_0.204518-208443.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/64_0.211114-212420.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/64_0.211114-212420.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/64_0.211114-212420.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/65_0.213914-214887.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/65_0.213914-214887.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/65_0.213914-214887.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/66_0.220064-221720.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/66_0.220064-221720.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/66_0.220064-221720.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/67_0.227763-228614.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/67_0.227763-228614.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/67_0.227763-228614.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/68_0.236109-238283.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/68_0.236109-238283.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/68_0.236109-238283.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/69_0.243175-245670.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/69_0.243175-245670.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/69_0.243175-245670.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/70_0.250116-250989.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/70_0.250116-250989.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/70_0.250116-250989.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C24 Length: 107845 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:2 current j:0 j_size:2 current j:1 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C24.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C24.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:6 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1193%7Clate.for.1-1367.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.1-1367.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.1-1367.120301b_Contig1193%7Clate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3787%7Clate.for.1-1517.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.1-1517.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.1-1517.Ar_EST_120301b_c3787%7Clate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14331%7Ccls.for.3201-4608.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.3201-4608.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.3201-4608.Ar_EST_120301b_c14331%7Ccls.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14231%7Cprotein.for.4815-6119.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.4815-6119.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.4815-6119.Ar_EST_120301b_c14231%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18348%7Ccll.for.14932-16445.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.14932-16445.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.14932-16445.Ar_EST_120301b_c18348%7Ccll.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19847%7Cgpi.for.16578-18442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.16578-18442.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.16578-18442.Ar_EST_120301b_c19847%7Cgpi.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11791%7Cgpi.for.17765-19120.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.17765-19120.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.17765-19120.Ar_EST_120301b_c11791%7Cgpi.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15639%7Ceb3rody02gk4bl.for.23474-26040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.23474-26040.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.23474-26040.Ar_EST_120301b_c15639%7Ceb3rody02gk4bl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1030%7Cprotein.for.23403-26040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.23403-26040.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.23403-26040.Ar_EST_120301b_c1030%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17732%7Cest_ssal_evd_45206.for.26353-27684.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.26353-27684.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.26353-27684.Ar_EST_120301b_c17732%7Cest_ssal_evd_45206.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18177%7Chx195251.for.28612-29656.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.28612-29656.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.28612-29656.Ar_EST_120301b_c18177%7Chx195251.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12724%7Cu4.for.34991-36090.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.34991-36090.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.34991-36090.Ar_EST_120301b_c12724%7Cu4.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8833%7Cprotein.for.35163-36584.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.35163-36584.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.35163-36584.Ar_EST_120301b_c8833%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13085%7C255376557.for.38544-39869.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.38544-39869.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.38544-39869.Ar_EST_120301b_c13085%7C255376557.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3699%7Ctpr.for.41370-43105.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.41370-43105.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.41370-43105.Ar_EST_120301b_c3699%7Ctpr.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c505%7Ccytochrome.for.42948-44200.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.42948-44200.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.42948-44200.Ar_EST_120301b_c505%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15493%7Chypothetical.for.49628-50870.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.49628-50870.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.49628-50870.Ar_EST_120301b_c15493%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2223%7C3-hydroxyisobutyryl-.for.50334-51728.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.50334-51728.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.50334-51728.Ar_EST_120301b_c2223%7C3-hydroxyisobutyryl-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13348%7C---NA---.for.50969-52069.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.50969-52069.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.50969-52069.Ar_EST_120301b_c13348%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8134%7CPJ1444.for.51579-53657.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.51579-53657.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.51579-53657.Ar_EST_120301b_c8134%7CPJ1444.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18835%7C---NA---.for.53933-55329.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.53933-55329.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.53933-55329.Ar_EST_120301b_c18835%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7681%7Ccell.for.53935-55251.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.53935-55251.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.53935-55251.Ar_EST_120301b_rep_c7681%7Ccell.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20521%7C---NA---.for.53935-55086.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.53935-55086.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.53935-55086.Ar_EST_120301b_rep_c20521%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13477%7C---NA---.for.56717-57809.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.56717-57809.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.56717-57809.Ar_EST_120301b_c13477%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7315%7Coxysterol-binding.for.57696-59731.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.57696-59731.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.57696-59731.Ar_EST_120301b_rep_c7315%7Coxysterol-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7217%7Coxysterol-binding.for.57465-59619.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.57465-59619.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.57465-59619.Ar_EST_120301b_rep_c7217%7Coxysterol-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7183%7Coxysterol-binding.for.57606-59167.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.57606-59167.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.57606-59167.Ar_EST_120301b_rep_c7183%7Coxysterol-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7334%7Coxysterol.for.58089-59443.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.58089-59443.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.58089-59443.Ar_EST_120301b_rep_c7334%7Coxysterol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12557%7Cfm132192.for.59433-60491.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.59433-60491.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.59433-60491.Ar_EST_120301b_c12557%7Cfm132192.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18461%7Cbactericidal.for.63637-65201.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.63637-65201.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.63637-65201.Ar_EST_120301b_c18461%7Cbactericidal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9729%7Cmucin-.for.66148-67658.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.66148-67658.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.66148-67658.Ar_EST_120301b_c9729%7Cmucin-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9330%7Cuvb-resistance.for.68944-70534.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.68944-70534.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.68944-70534.Ar_EST_120301b_c9330%7Cuvb-resistance.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10894%7Cdomain-containing.for.71789-72913.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.71789-72913.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.71789-72913.Ar_EST_120301b_c10894%7Cdomain-containing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3071%7Cdomain-containing.for.70951-72815.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.70951-72815.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.70951-72815.Ar_EST_120301b_c3071%7Cdomain-containing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8995%7Cdomain-containing.for.72568-74088.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.72568-74088.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.72568-74088.Ar_EST_120301b_c8995%7Cdomain-containing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3896%7Csenescence-associated.for.72282-73682.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.72282-73682.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.72282-73682.Ar_EST_120301b_c3896%7Csenescence-associated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1150%7Caara_dicdi.for.73122-74881.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.73122-74881.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.73122-74881.Ar_EST_120301b_c1150%7Caara_dicdi.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9186%7C40s.for.76695-77870.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.76695-77870.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.76695-77870.Ar_EST_120301b_rep_c9186%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1960%7Cmeloidogyne.for.78849-80178.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.78849-80178.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.78849-80178.Ar_EST_120301b_c1960%7Cmeloidogyne.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10660%7Canolis.for.79275-80557.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.79275-80557.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.79275-80557.Ar_EST_120301b_c10660%7Canolis.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16062%7Cmitochondrial.for.79842-81299.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.79842-81299.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.79842-81299.Ar_EST_120301b_c16062%7Cmitochondrial.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18366%7C---NA---.for.81065-82374.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.81065-82374.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.81065-82374.Ar_EST_120301b_c18366%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8209%7Cudp-glucose.for.82553-83976.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.82553-83976.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.82553-83976.Ar_EST_120301b_c8209%7Cudp-glucose.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19592%7Cudp-glucose.for.82194-83523.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.82194-83523.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.82194-83523.Ar_EST_120301b_c19592%7Cudp-glucose.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c201%7Cperoxidase.for.89062-90517.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.89062-90517.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.89062-90517.Ar_EST_120301b_c201%7Cperoxidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14840%7Cankyrin.for.90146-91704.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.90146-91704.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.90146-91704.Ar_EST_120301b_c14840%7Cankyrin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17608%7Chydroxycinnamoyl-coenzyme.for.91385-92665.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.91385-92665.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.91385-92665.Ar_EST_120301b_c17608%7Chydroxycinnamoyl-coenzyme.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1727%7Cprotein.for.93442-94838.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.93442-94838.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.93442-94838.Ar_EST_120301b_c1727%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12096%7Cbj057728.for.94158-95401.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.94158-95401.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.94158-95401.Ar_EST_120301b_c12096%7Cbj057728.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2186%7C03ju.for.94951-96270.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.94951-96270.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.94951-96270.Ar_EST_120301b_c2186%7C03ju.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig59%7Cprotein.for.96335-98895.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.96335-98895.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.96335-98895.120301b_Contig59%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1249%7Ctype.for.100365-101735.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.100365-101735.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.100365-101735.Ar_EST_120301b_c1249%7Ctype.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6838%7Cchaperone.for.99052-100777.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.99052-100777.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.99052-100777.Ar_EST_120301b_rep_c6838%7Cchaperone.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig246%7Cprotein.for.98366-101485.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.98366-101485.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.98366-101485.120301b_Contig246%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10371%7Cviral.for.101874-103650.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.101874-103650.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.101874-103650.Ar_EST_120301b_c10371%7Cviral.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1846%7Ccu580856.for.103580-104910.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.103580-104910.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.103580-104910.Ar_EST_120301b_c1846%7Ccu580856.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10785%7C---NA---.for.105911-107157.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.105911-107157.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.105911-107157.Ar_EST_120301b_c10785%7C---NA---.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:34 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:27 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:43 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:50 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:49 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:39 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:32 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:42 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:38 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:19 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093049%7Cgb%7CEFC46688%2E1%7C.for.16805-18843.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.16805-18843.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.16805-18843.gi%7C284093049%7Cgb%7CEFC46688%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082549%7Cgb%7CEFC36265%2E1%7C.for.18864-20806.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.18864-20806.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.18864-20806.gi%7C284082549%7Cgb%7CEFC36265%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.30087-33385.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33385.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33385.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.for.30099-33343.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33343.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33343.gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.for.30105-33424.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30105-33424.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30105-33424.gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085983%7Cgb%7CEFC39663%2E1%7C.for.30096-33337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30096-33337.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30096-33337.gi%7C284085983%7Cgb%7CEFC39663%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.for.30099-33337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33337.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33337.gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.for.30102-33373.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33373.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33373.gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.for.30099-32320.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-32320.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-32320.gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088147%7Cgb%7CEFC41812%2E1%7C.for.30102-33343.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33343.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33343.gi%7C284088147%7Cgb%7CEFC41812%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.for.30102-33400.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33400.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33400.gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.for.30093-33382.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30093-33382.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30093-33382.gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.for.30087-33394.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33394.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33394.gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.for.30105-33337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30105-33337.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30105-33337.gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.for.30087-33346.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33346.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33346.gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082687%7Cgb%7CEFC36400%2E1%7C.for.30087-33403.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33403.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33403.gi%7C284082687%7Cgb%7CEFC36400%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091293%7Cgb%7CEFC44940%2E1%7C.for.30090-33337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30090-33337.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30090-33337.gi%7C284091293%7Cgb%7CEFC44940%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.for.30093-33346.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30093-33346.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30093-33346.gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.for.30099-33343.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33343.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33343.gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097002%7Cgb%7CEFC50629%2E1%7C.for.30096-33394.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30096-33394.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30096-33394.gi%7C284097002%7Cgb%7CEFC50629%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.for.30099-33469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33469.gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092908%7Cgb%7CEFC46548%2E1%7C.for.30099-33346.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33346.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33346.gi%7C284092908%7Cgb%7CEFC46548%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.for.30099-33403.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33403.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33403.gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.for.30072-33400.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30072-33400.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30072-33400.gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.for.30048-33337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30048-33337.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30048-33337.gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094023%7Cgb%7CEFC47658%2E1%7C.for.29985-33346.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.29985-33346.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.29985-33346.gi%7C284094023%7Cgb%7CEFC47658%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.for.30102-33343.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33343.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33343.gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.for.30105-31525.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30105-31525.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30105-31525.gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092204%7Cgb%7CEFC45847%2E1%7C.for.30099-33394.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33394.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33394.gi%7C284092204%7Cgb%7CEFC45847%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.for.30099-33337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33337.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33337.gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081757%7Cgb%7CEFC35637%2E1%7C.for.30099-33409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33409.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33409.gi%7C284081757%7Cgb%7CEFC35637%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.for.30042-33352.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30042-33352.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30042-33352.gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.for.30102-33340.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33340.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33340.gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.for.30015-32359.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30015-32359.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30015-32359.gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085299%7Cgb%7CEFC38984%2E1%7C.for.30087-33346.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33346.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33346.gi%7C284085299%7Cgb%7CEFC38984%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087676%7Cgb%7CEFC41344%2E1%7C.for.30093-33430.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30093-33430.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30093-33430.gi%7C284087676%7Cgb%7CEFC41344%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080808%7Cgb%7CEFC35194%2E1%7C.for.30102-33337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33337.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33337.gi%7C284080808%7Cgb%7CEFC35194%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.for.30132-32341.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30132-32341.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30132-32341.gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091375%7Cgb%7CEFC45022%2E1%7C.for.39920-41115.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.39920-41115.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.39920-41115.gi%7C284091375%7Cgb%7CEFC45022%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087092%7Cgb%7CEFC40764%2E1%7C.for.39695-41100.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.39695-41100.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.39695-41100.gi%7C284087092%7Cgb%7CEFC40764%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089341%7Cgb%7CEFC42999%2E1%7C.for.43545-45547.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.43545-45547.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.43545-45547.gi%7C284089341%7Cgb%7CEFC42999%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092455%7Cgb%7CEFC46097%2E1%7C.for.43533-45508.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.43533-45508.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.43533-45508.gi%7C284092455%7Cgb%7CEFC46097%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087860%7Cgb%7CEFC41527%2E1%7C.for.44061-45661.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.44061-45661.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.44061-45661.gi%7C284087860%7Cgb%7CEFC41527%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092586%7Cgb%7CEFC46227%2E1%7C.for.65301-66295.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.65301-66295.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.65301-66295.gi%7C284092586%7Cgb%7CEFC46227%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091528%7Cgb%7CEFC45174%2E1%7C.for.76723-77714.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.76723-77714.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.76723-77714.gi%7C284091528%7Cgb%7CEFC45174%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087484%7Cgb%7CEFC41153%2E1%7C.for.79834-81594.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.79834-81594.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.79834-81594.gi%7C284087484%7Cgb%7CEFC41153%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:8 now processing 0 total clusters:8 now processing 0 total clusters:8 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:8 now processing 0 total clusters:8 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:8 now processing 0 total clusters:8 now processing 0 total clusters:8 now processing 0 in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:5 now processing 0 total clusters:5 now processing 0 ...processing 0 of 24 ...processing 1 of 24 ...processing 2 of 24 ...processing 3 of 24 ...processing 4 of 24 ...processing 5 of 24 ...processing 6 of 24 ...processing 7 of 24 ...processing 8 of 24 ...processing 9 of 24 ...processing 10 of 24 ...processing 11 of 24 ...processing 12 of 24 ...processing 13 of 24 ...processing 14 of 24 ...processing 15 of 24 ...processing 16 of 24 ...processing 17 of 24 ...processing 18 of 24 ...processing 19 of 24 ...processing 20 of 24 ...processing 21 of 24 ...processing 22 of 24 ...processing 23 of 24 total clusters:5 now processing 0 total clusters:5 now processing 0 total clusters:5 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:17 now processing 0 total clusters:17 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 19 ...processing 1 of 19 ...processing 2 of 19 ...processing 3 of 19 ...processing 4 of 19 ...processing 5 of 19 ...processing 6 of 19 ...processing 7 of 19 ...processing 8 of 19 ...processing 9 of 19 ...processing 10 of 19 ...processing 11 of 19 ...processing 12 of 19 ...processing 13 of 19 ...processing 14 of 19 ...processing 15 of 19 ...processing 16 of 19 ...processing 17 of 19 ...processing 18 of 19 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.15131-16245.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.15131-16245.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.15131-16245.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.26552-27484.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.26552-27484.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.26552-27484.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.28610-29472.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.28610-29472.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.28610-29472.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.38743-39674.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.38743-39674.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.38743-39674.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.41556-42905.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.41556-42905.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.41556-42905.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.43142-44000.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.43142-44000.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.43142-44000.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.57628-59531.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.57628-59531.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.57628-59531.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.63821-65003.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.63821-65003.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.63821-65003.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.79048-80363.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.79048-80363.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.79048-80363.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.81264-82174.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.81264-82174.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.81264-82174.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.82393-83776.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.82393-83776.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.82393-83776.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.89253-90332.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.89253-90332.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.89253-90332.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.93641-94643.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.93641-94643.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.93641-94643.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.95103-96070.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.95103-96070.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.95103-96070.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.98565-101535.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.98565-101535.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.98565-101535.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.102073-103452.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.102073-103452.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.102073-103452.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.106110-106962.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.106110-106962.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.106110-106962.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.0-1317.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.0-1317.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.0-1317.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.3400-5919.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.3400-5919.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.3400-5919.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.16775-18643.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.16775-18643.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.16775-18643.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.19063-20606.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.19063-20606.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.19063-20606.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.23602-24576.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.23602-24576.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.23602-24576.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.30214-33224.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.30214-33224.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.30214-33224.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.35162-36384.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.35162-36384.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.35162-36384.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.40119-40915.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.40119-40915.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.40119-40915.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.43732-45461.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.43732-45461.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.43732-45461.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.49827-53513.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.49827-53513.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.49827-53513.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.54132-55129.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.54132-55129.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.54132-55129.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.56916-57609.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.56916-57609.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.56916-57609.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.59632-60457.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.59632-60457.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.59632-60457.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.65500-66095.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.65500-66095.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.65500-66095.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.66347-67458.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.66347-67458.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.66347-67458.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.69135-70334.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.69135-70334.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.69135-70334.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.71150-74681.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.71150-74681.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.71150-74681.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.76922-77514.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.76922-77514.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.76922-77514.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.80033-81394.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.80033-81394.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.80033-81394.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.90345-91504.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.90345-91504.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.90345-91504.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.91584-92465.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.91584-92465.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.91584-92465.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.103777-104710.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.103777-104710.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.103777-104710.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C25 Length: 12557 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:1 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C25.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C25.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12213%7Cserum.for.4686-6013.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.4686-6013.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.4686-6013.Ar_EST_120301b_c12213%7Cserum.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13871%7Cserum.for.4474-5739.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.4474-5739.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.4474-5739.Ar_EST_120301b_c13871%7Cserum.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16373%7Cserum.for.4474-6013.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.4474-6013.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.4474-6013.Ar_EST_120301b_c16373%7Cserum.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17460%7Cpredicted.for.7767-9114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.7767-9114.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.7767-9114.Ar_EST_120301b_c17460%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12919%7Cca48en0002_i.for.8552-9892.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.8552-9892.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.8552-9892.Ar_EST_120301b_c12919%7Cca48en0002_i.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2764%7Cnadh.for.11528-12557.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.11528-12557.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.11528-12557.Ar_EST_120301b_c2764%7Cnadh.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:5 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:5 now processing 0 total clusters:5 now processing 0 total clusters:5 now processing 0 total clusters:5 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:7 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:10 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:5 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:9 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:6 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:14 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:12 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:10 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:5 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:8 hits collecting blastx reports polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091972%7Cgb%7CEFC45616%2E1%7C.for.5442-6683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.5442-6683.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.5442-6683.gi%7C284091972%7Cgb%7CEFC45616%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:4 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:4 now processing 0 total clusters:4 now processing 0 total clusters:4 now processing 0 in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:1 now processing 0 annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.4673-5813.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.4673-5813.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.4673-5813.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.7966-9692.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.7966-9692.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.7966-9692.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.11727-12557.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.11727-12557.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.11727-12557.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C26 Length: 30228 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:3 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:1 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C26.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C26.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1435%7Cshort-chain.for.1-966.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1-966.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1-966.Ar_EST_120301b_c1435%7Cshort-chain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4547%7Cpeptidyl-prolyl.for.533-2079.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.533-2079.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.533-2079.Ar_EST_120301b_rep_c4547%7Cpeptidyl-prolyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13051%7Cdiphosphomevalonate.for.2604-3822.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.2604-3822.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.2604-3822.Ar_EST_120301b_c13051%7Cdiphosphomevalonate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9753%7Cdiphosphomevalonate.for.3048-4517.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.3048-4517.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.3048-4517.Ar_EST_120301b_c9753%7Cdiphosphomevalonate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17359%7Cpredicted.for.4191-5513.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.4191-5513.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.4191-5513.Ar_EST_120301b_c17359%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16806%7Cheat.for.6535-7644.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6535-7644.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6535-7644.Ar_EST_120301b_rep_c16806%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6111%7Cunq118-.for.7137-8101.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.7137-8101.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.7137-8101.Ar_EST_120301b_rep_c6111%7Cunq118-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20263%7Cm105c12r.for.6734-7787.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6734-7787.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6734-7787.Ar_EST_120301b_rep_c20263%7Cm105c12r.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6339%7C---NA---.for.6541-7790.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6541-7790.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6541-7790.Ar_EST_120301b_rep_c6339%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4077%7Cprotein.for.6643-8283.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6643-8283.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6643-8283.Ar_EST_120301b_rep_c4077%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20244%7Clim.for.6558-7789.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6558-7789.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6558-7789.Ar_EST_120301b_rep_c20244%7Clim.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11314%7Cgtp-binding.for.6970-8126.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6970-8126.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6970-8126.Ar_EST_120301b_rep_c11314%7Cgtp-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20404%7Cprotein.for.7103-8081.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.7103-8081.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.7103-8081.Ar_EST_120301b_rep_c20404%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19526%7Ccazo.for.6535-7828.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6535-7828.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6535-7828.Ar_EST_120301b_rep_c19526%7Ccazo.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9415%7C000826otya999025ht.for.7770-9085.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.7770-9085.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.7770-9085.Ar_EST_120301b_c9415%7C000826otya999025ht.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13240%7Cprotein.for.12830-14321.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.12830-14321.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.12830-14321.Ar_EST_120301b_c13240%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4447%7Cpathogenesis-related.for.16744-18213.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.16744-18213.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.16744-18213.Ar_EST_120301b_rep_c4447%7Cpathogenesis-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1392%7Cglycine.for.18463-20388.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.18463-20388.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.18463-20388.120301b_Contig1392%7Cglycine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig112%7Cglycine.for.19277-20741.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.19277-20741.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.19277-20741.120301b_Contig112%7Cglycine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2532%7Cglycine.for.17984-19620.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.17984-19620.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.17984-19620.Ar_EST_120301b_c2532%7Cglycine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2582%7Cglycine.for.20162-21458.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.20162-21458.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.20162-21458.Ar_EST_120301b_c2582%7Cglycine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1819%7Cglycine.for.20617-22092.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.20617-22092.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.20617-22092.Ar_EST_120301b_c1819%7Cglycine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18083%7Cpredicted.for.21304-22699.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.21304-22699.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.21304-22699.Ar_EST_120301b_c18083%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1288%7Csec1.for.22782-24229.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.22782-24229.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.22782-24229.Ar_EST_120301b_c1288%7Csec1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4755%7Cring.for.22158-23653.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.22158-23653.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.22158-23653.Ar_EST_120301b_rep_c4755%7Cring.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13389%7Cproliferation-associated.for.22647-23597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.22647-23597.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.22647-23597.Ar_EST_120301b_rep_c13389%7Cproliferation-associated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18239%7Cprotein.for.24795-26024.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.24795-26024.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.24795-26024.Ar_EST_120301b_c18239%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14682%7Cfy377012.for.25095-26211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.25095-26211.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.25095-26211.Ar_EST_120301b_c14682%7Cfy377012.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12457%7Cdk457596.for.28008-29513.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.28008-29513.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.28008-29513.Ar_EST_120301b_c12457%7Cdk457596.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:43 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:30 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:34 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:46 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:30 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:39 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:24 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:33 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:35 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:29 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081155%7Cgb%7CEFC35313%2E1%7C.for.767-2080.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2080.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2080.gi%7C284081155%7Cgb%7CEFC35313%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092983%7Cgb%7CEFC46623%2E1%7C.for.767-2080.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2080.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2080.gi%7C284092983%7Cgb%7CEFC46623%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096875%7Cgb%7CEFC50502%2E1%7C.for.803-2092.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.803-2092.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.803-2092.gi%7C284096875%7Cgb%7CEFC50502%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090267%7Cgb%7CEFC43920%2E1%7C.for.767-2017.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2017.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2017.gi%7C284090267%7Cgb%7CEFC43920%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092579%7Cgb%7CEFC46220%2E1%7C.for.800-2023.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.800-2023.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.800-2023.gi%7C284092579%7Cgb%7CEFC46220%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093592%7Cgb%7CEFC47229%2E1%7C.for.972-2062.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.972-2062.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.972-2062.gi%7C284093592%7Cgb%7CEFC47229%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089692%7Cgb%7CEFC43348%2E1%7C.for.800-2068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.800-2068.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.800-2068.gi%7C284089692%7Cgb%7CEFC43348%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093109%7Cgb%7CEFC46748%2E1%7C.for.800-2023.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.800-2023.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.800-2023.gi%7C284093109%7Cgb%7CEFC46748%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085514%7Cgb%7CEFC39197%2E1%7C.for.542-2104.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.542-2104.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.542-2104.gi%7C284085514%7Cgb%7CEFC39197%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088464%7Cgb%7CEFC42127%2E1%7C.for.767-2020.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2020.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2020.gi%7C284088464%7Cgb%7CEFC42127%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094883%7Cgb%7CEFC48516%2E1%7C.for.752-2098.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.752-2098.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.752-2098.gi%7C284094883%7Cgb%7CEFC48516%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095464%7Cgb%7CEFC49095%2E1%7C.for.767-2074.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2074.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2074.gi%7C284095464%7Cgb%7CEFC49095%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090503%7Cgb%7CEFC44154%2E1%7C.for.767-2074.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2074.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2074.gi%7C284090503%7Cgb%7CEFC44154%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086458%7Cgb%7CEFC40134%2E1%7C.for.767-1996.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-1996.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-1996.gi%7C284086458%7Cgb%7CEFC40134%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090230%7Cgb%7CEFC43883%2E1%7C.for.1576-3068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1576-3068.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1576-3068.gi%7C284090230%7Cgb%7CEFC43883%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081326%7Cgb%7CEFC35393%2E1%7C.for.1795-2795.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1795-2795.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1795-2795.gi%7C284081326%7Cgb%7CEFC35393%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092568%7Cgb%7CEFC46209%2E1%7C.for.1464-3077.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1464-3077.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1464-3077.gi%7C284092568%7Cgb%7CEFC46209%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089451%7Cgb%7CEFC43108%2E1%7C.for.1573-3146.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1573-3146.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1573-3146.gi%7C284089451%7Cgb%7CEFC43108%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089702%7Cgb%7CEFC43358%2E1%7C.for.1735-2825.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1735-2825.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1735-2825.gi%7C284089702%7Cgb%7CEFC43358%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084444%7Cgb%7CEFC38137%2E1%7C.for.1341-3107.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1341-3107.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1341-3107.gi%7C284084444%7Cgb%7CEFC38137%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082844%7Cgb%7CEFC36555%2E1%7C.for.2605-4508.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.2605-4508.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.2605-4508.gi%7C284082844%7Cgb%7CEFC36555%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091841%7Cgb%7CEFC45486%2E1%7C.for.18327-22000.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.18327-22000.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.18327-22000.gi%7C284091841%7Cgb%7CEFC45486%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081842%7Cgb%7CEFC35690%2E1%7C.for.22129-23267.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.22129-23267.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.22129-23267.gi%7C284081842%7Cgb%7CEFC35690%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:5 now processing 0 ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:5 now processing 0 total clusters:5 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:5 now processing 0 total clusters:5 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:5 now processing 0 ...processing 0 of 11 ...processing 1 of 11 ...processing 2 of 11 ...processing 3 of 11 ...processing 4 of 11 ...processing 5 of 11 ...processing 6 of 11 ...processing 7 of 11 ...processing 8 of 11 ...processing 9 of 11 ...processing 10 of 11 total clusters:5 now processing 0 total clusters:5 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:5 now processing 0 total clusters:5 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:7 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:7 now processing 0 total clusters:7 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:7 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.741-1904.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.741-1904.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.741-1904.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.4379-5313.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.4379-5313.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.4379-5313.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.6734-7628.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.6734-7628.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.6734-7628.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.7969-8885.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.7969-8885.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.7969-8885.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.18183-21892.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.18183-21892.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.18183-21892.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.28207-29347.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.28207-29347.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.28207-29347.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.0-766.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.0-766.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.0-766.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.1540-4317.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.1540-4317.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.1540-4317.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.13029-14137.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.13029-14137.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.13029-14137.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.16943-18013.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.16943-18013.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.16943-18013.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.21503-24123.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.21503-24123.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.21503-24123.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C28 Length: 140015 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C28.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C28.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:4 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16986%7Cvcdc13845.for.460-1786.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.460-1786.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.460-1786.Ar_EST_120301b_c16986%7Cvcdc13845.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11015%7Cmgc84566.for.4593-6206.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.4593-6206.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.4593-6206.Ar_EST_120301b_c11015%7Cmgc84566.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11527%7Chypothetical.for.5457-7204.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.5457-7204.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.5457-7204.Ar_EST_120301b_c11527%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16112%7Cvps28.for.5450-6585.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.5450-6585.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.5450-6585.Ar_EST_120301b_c16112%7Cvps28.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1268%7Creep3.for.7225-8749.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.7225-8749.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.7225-8749.Ar_EST_120301b_c1268%7Creep3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12533%7C---NA---.for.9019-10308.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.9019-10308.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.9019-10308.Ar_EST_120301b_c12533%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1967%7C3.for.7966-10076.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.7966-10076.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.7966-10076.Ar_EST_120301b_c1967%7C3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10582%7Cqct.for.9913-11212.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.9913-11212.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.9913-11212.Ar_EST_120301b_c10582%7Cqct.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c343%7Ckelch.for.10506-11991.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.10506-11991.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.10506-11991.Ar_EST_120301b_c343%7Ckelch.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3655%7Calpha-mannosidase.for.11467-14155.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.11467-14155.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.11467-14155.Ar_EST_120301b_c3655%7Calpha-mannosidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c499%7Cglycosyl.for.13565-15516.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.13565-15516.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.13565-15516.Ar_EST_120301b_c499%7Cglycosyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c650%7Cfq204399.for.15296-16768.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.15296-16768.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.15296-16768.Ar_EST_120301b_c650%7Cfq204399.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12233%7Cautophagy-related.for.16224-17667.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.16224-17667.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.16224-17667.Ar_EST_120301b_c12233%7Cautophagy-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10021%7Ceukaryotic.for.19860-21179.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.19860-21179.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.19860-21179.Ar_EST_120301b_c10021%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13248%7Chypothetical.for.26913-28208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.26913-28208.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.26913-28208.Ar_EST_120301b_c13248%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3283%7Cdenn.for.27515-29594.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.27515-29594.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.27515-29594.Ar_EST_120301b_c3283%7Cdenn.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13847%7Cprotein.for.34193-35519.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.34193-35519.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.34193-35519.Ar_EST_120301b_c13847%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15634%7Cdna.for.35289-36838.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.35289-36838.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.35289-36838.Ar_EST_120301b_c15634%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9717%7CUncharacterized.for.38490-40142.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.38490-40142.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.38490-40142.Ar_EST_120301b_c9717%7CUncharacterized.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15012%7Cleukocyte.for.39997-41185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.39997-41185.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.39997-41185.Ar_EST_120301b_c15012%7Cleukocyte.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10635%7Cserine.for.40921-42054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40921-42054.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40921-42054.Ar_EST_120301b_c10635%7Cserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig650%7Cserine.for.41091-43327.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41091-43327.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41091-43327.120301b_Contig650%7Cserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c731%7Cfn028540.for.42571-43798.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.42571-43798.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.42571-43798.Ar_EST_120301b_c731%7Cfn028540.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9323%7Caplysia.for.42974-44766.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.42974-44766.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.42974-44766.Ar_EST_120301b_c9323%7Caplysia.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12855%7Ccbwb.for.46476-47874.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.46476-47874.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.46476-47874.Ar_EST_120301b_c12855%7Ccbwb.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17067%7Csentrin-specific.for.47159-48553.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.47159-48553.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.47159-48553.Ar_EST_120301b_c17067%7Csentrin-specific.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5223%7Cimsp1_venph.for.56711-58040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.56711-58040.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.56711-58040.Ar_EST_120301b_rep_c5223%7Cimsp1_venph.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17363%7Cpredicted.for.57604-58980.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.57604-58980.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.57604-58980.Ar_EST_120301b_c17363%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15345%7Cats1.for.58530-59811.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.58530-59811.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.58530-59811.Ar_EST_120301b_c15345%7Cats1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15400%7Csa2-vi-b8.for.61106-62363.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.61106-62363.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.61106-62363.Ar_EST_120301b_c15400%7Csa2-vi-b8.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c653%7Ccytochrome.for.69192-71656.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.69192-71656.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.69192-71656.Ar_EST_120301b_c653%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6854%7Cmedium-chain.for.69883-71610.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.69883-71610.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.69883-71610.Ar_EST_120301b_rep_c6854%7Cmedium-chain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5386%7Crelated.for.69897-71031.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.69897-71031.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.69897-71031.Ar_EST_120301b_rep_c5386%7Crelated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2281%7Ckti12.for.71371-72941.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.71371-72941.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.71371-72941.Ar_EST_120301b_c2281%7Ckti12.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12014%7Cprotein.for.74568-76292.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.74568-76292.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.74568-76292.Ar_EST_120301b_c12014%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2496%7Cloc496076.for.75620-77212.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.75620-77212.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.75620-77212.Ar_EST_120301b_c2496%7Cloc496076.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13121%7Cubiquitin-conjugating.for.76567-77772.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.76567-77772.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.76567-77772.Ar_EST_120301b_c13121%7Cubiquitin-conjugating.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17049%7Cubiquitin-conjugating.for.76656-78111.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.76656-78111.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.76656-78111.Ar_EST_120301b_c17049%7Cubiquitin-conjugating.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15707%7Cubiquitin-conjugating.for.77963-79236.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.77963-79236.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.77963-79236.Ar_EST_120301b_c15707%7Cubiquitin-conjugating.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19531%7Ccytochrome.for.83617-84850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.83617-84850.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.83617-84850.Ar_EST_120301b_rep_c19531%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20458%7Cg5p_21469.for.82987-84183.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82987-84183.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82987-84183.Ar_EST_120301b_rep_c20458%7Cg5p_21469.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig525%7Ccytochrome.for.82529-84894.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82529-84894.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82529-84894.120301b_Contig525%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11444%7Ccytochrome.for.82958-84201.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82958-84201.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82958-84201.Ar_EST_120301b_rep_c11444%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20388%7Ccytochrome.for.82934-84490.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82934-84490.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82934-84490.Ar_EST_120301b_rep_c20388%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12324%7Cprobable.for.83655-84889.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.83655-84889.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.83655-84889.Ar_EST_120301b_rep_c12324%7Cprobable.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20161%7Csoluble.for.82773-83790.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82773-83790.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82773-83790.Ar_EST_120301b_rep_c20161%7Csoluble.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig757%7Cpredicted.for.84687-86383.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.84687-86383.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.84687-86383.120301b_Contig757%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig881%7Cariadne-like.for.85969-88271.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.85969-88271.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.85969-88271.120301b_Contig881%7Cariadne-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2491%7Cprotein.for.88092-90169.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.88092-90169.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.88092-90169.Ar_EST_120301b_c2491%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17100%7Csenescence-associated.for.90025-91440.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.90025-91440.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.90025-91440.Ar_EST_120301b_c17100%7Csenescence-associated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16583%7Ccolon.for.90585-91993.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.90585-91993.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.90585-91993.Ar_EST_120301b_c16583%7Ccolon.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15294%7Cpoly.for.91935-93211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.91935-93211.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.91935-93211.Ar_EST_120301b_c15294%7Cpoly.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig697%7Cankrd32.for.97243-98654.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.97243-98654.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.97243-98654.120301b_Contig697%7Cankrd32.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8635%7Cbrct.for.98441-100125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.98441-100125.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.98441-100125.Ar_EST_120301b_c8635%7Cbrct.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12958%7Cphosphoenolpyruvate.for.99382-100569.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99382-100569.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99382-100569.Ar_EST_120301b_rep_c12958%7Cphosphoenolpyruvate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7209%7Cphosphoenolpyruvate.for.99366-101327.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99366-101327.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99366-101327.Ar_EST_120301b_rep_c7209%7Cphosphoenolpyruvate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13873%7Cphosphoenolpyruvate.for.100295-101322.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.100295-101322.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.100295-101322.Ar_EST_120301b_rep_c13873%7Cphosphoenolpyruvate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4052%7Cphosphoenolpyruvate.for.99339-102017.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99339-102017.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99339-102017.Ar_EST_120301b_rep_c4052%7Cphosphoenolpyruvate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5671%7Cphosphoenolpyruvate.for.99792-101500.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99792-101500.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99792-101500.Ar_EST_120301b_rep_c5671%7Cphosphoenolpyruvate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4277%7Cphosphoenolpyruvate.for.100302-101725.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.100302-101725.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.100302-101725.Ar_EST_120301b_rep_c4277%7Cphosphoenolpyruvate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16128%7Ctranslation.for.101948-103355.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.101948-103355.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.101948-103355.Ar_EST_120301b_c16128%7Ctranslation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15868%7Ckn511.for.102976-104447.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.102976-104447.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.102976-104447.Ar_EST_120301b_c15868%7Ckn511.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7068%7C%28%2B%29-neomenthol.for.105801-107350.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.105801-107350.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.105801-107350.Ar_EST_120301b_rep_c7068%7C%28%2B%29-neomenthol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10200%7Cmetaxin.for.107922-109515.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.107922-109515.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.107922-109515.Ar_EST_120301b_c10200%7Cmetaxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17456%7Cactinin-like.for.114899-116189.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.114899-116189.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.114899-116189.Ar_EST_120301b_c17456%7Cactinin-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig155%7Cww.for.115764-117485.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.115764-117485.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.115764-117485.120301b_Contig155%7Cww.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c522%7Cprotein.for.116877-118241.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.116877-118241.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.116877-118241.Ar_EST_120301b_c522%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14850%7Ccayc.for.118074-119429.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.118074-119429.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.118074-119429.Ar_EST_120301b_c14850%7Ccayc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1195%7Chypothetical.for.119558-121154.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.119558-121154.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.119558-121154.Ar_EST_120301b_c1195%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c724%7Chypothetical.for.118804-120405.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.118804-120405.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.118804-120405.Ar_EST_120301b_c724%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13008%7Chypothetical.for.120208-121407.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.120208-121407.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.120208-121407.Ar_EST_120301b_c13008%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3587%7Cprotein.for.120897-123890.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.120897-123890.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.120897-123890.Ar_EST_120301b_c3587%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8766%7Cdenn.for.123949-125254.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.123949-125254.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.123949-125254.Ar_EST_120301b_rep_c8766%7Cdenn.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17570%7Cprotein.for.123430-124522.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.123430-124522.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.123430-124522.Ar_EST_120301b_rep_c17570%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18858%7Cdenn.for.123660-125168.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.123660-125168.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.123660-125168.Ar_EST_120301b_c18858%7Cdenn.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3052%7Ccullin.for.125843-127484.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.125843-127484.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.125843-127484.Ar_EST_120301b_c3052%7Ccullin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17614%7Ccopper.for.125607-126815.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.125607-126815.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.125607-126815.Ar_EST_120301b_c17614%7Ccopper.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c747%7Cprotein.for.124500-126576.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.124500-126576.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.124500-126576.Ar_EST_120301b_c747%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17078%7Cist_wi5_15381.for.130667-131913.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.130667-131913.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.130667-131913.Ar_EST_120301b_c17078%7Cist_wi5_15381.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17485%7Ccnb66-.for.138702-140015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.138702-140015.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.138702-140015.Ar_EST_120301b_c17485%7Ccnb66-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2216%7Cnormalized.for.138992-140015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.138992-140015.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.138992-140015.Ar_EST_120301b_c2216%7Cnormalized.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2246%7Ccbpn%3A.for.139223-140015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.139223-140015.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.139223-140015.Ar_EST_120301b_c2246%7Ccbpn%3A.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:54 now processing 0 total clusters:54 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:54 now processing 0 total clusters:54 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:52 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:59 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:52 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:72 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:57 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:71 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:35 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:53 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:47 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:41 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083046%7Cgb%7CEFC36754%2E1%7C.for.1-836.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.1-836.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.1-836.gi%7C284083046%7Cgb%7CEFC36754%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091607%7Cgb%7CEFC45253%2E1%7C.for.7653-8617.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.7653-8617.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.7653-8617.gi%7C284091607%7Cgb%7CEFC45253%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092028%7Cgb%7CEFC45672%2E1%7C.for.30151-33419.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.30151-33419.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.30151-33419.gi%7C284092028%7Cgb%7CEFC45672%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090471%7Cgb%7CEFC44123%2E1%7C.for.32804-34254.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.32804-34254.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.32804-34254.gi%7C284090471%7Cgb%7CEFC44123%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096685%7Cgb%7CEFC50312%2E1%7C.for.33998-37035.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.33998-37035.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.33998-37035.gi%7C284096685%7Cgb%7CEFC50312%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088045%7Cgb%7CEFC41711%2E1%7C.for.33818-37032.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.33818-37032.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.33818-37032.gi%7C284088045%7Cgb%7CEFC41711%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090230%7Cgb%7CEFC43883%2E1%7C.for.41294-42622.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41294-42622.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41294-42622.gi%7C284090230%7Cgb%7CEFC43883%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094055%7Cgb%7CEFC47690%2E1%7C.for.40922-43327.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40922-43327.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40922-43327.gi%7C284094055%7Cgb%7CEFC47690%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082128%7Cgb%7CEFC35900%2E1%7C.for.41339-42475.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41339-42475.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41339-42475.gi%7C284082128%7Cgb%7CEFC35900%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096572%7Cgb%7CEFC50200%2E1%7C.for.41336-42448.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41336-42448.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41336-42448.gi%7C284096572%7Cgb%7CEFC50200%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092196%7Cgb%7CEFC45839%2E1%7C.for.40940-42625.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40940-42625.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40940-42625.gi%7C284092196%7Cgb%7CEFC45839%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089069%7Cgb%7CEFC42729%2E1%7C.for.40934-42631.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40934-42631.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40934-42631.gi%7C284089069%7Cgb%7CEFC42729%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088445%7Cgb%7CEFC42108%2E1%7C.for.41318-42628.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41318-42628.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41318-42628.gi%7C284088445%7Cgb%7CEFC42108%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089047%7Cgb%7CEFC42707%2E1%7C.for.40934-42631.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40934-42631.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40934-42631.gi%7C284089047%7Cgb%7CEFC42707%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092545%7Cgb%7CEFC46187%2E1%7C.for.41303-42622.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41303-42622.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41303-42622.gi%7C284092545%7Cgb%7CEFC46187%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092133%7Cgb%7CEFC45776%2E1%7C.for.41336-42763.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41336-42763.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41336-42763.gi%7C284092133%7Cgb%7CEFC45776%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091257%7Cgb%7CEFC44905%2E1%7C.for.41279-42607.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41279-42607.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41279-42607.gi%7C284091257%7Cgb%7CEFC44905%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083391%7Cgb%7CEFC37095%2E1%7C.for.46019-47220.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.46019-47220.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.46019-47220.gi%7C284083391%7Cgb%7CEFC37095%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096907%7Cgb%7CEFC50534%2E1%7C.for.47156-48682.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.47156-48682.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.47156-48682.gi%7C284096907%7Cgb%7CEFC50534%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095965%7Cgb%7CEFC49594%2E1%7C.for.48536-51738.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.48536-51738.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.48536-51738.gi%7C284095965%7Cgb%7CEFC49594%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093119%7Cgb%7CEFC46758%2E1%7C.for.51320-53360.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.51320-53360.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.51320-53360.gi%7C284093119%7Cgb%7CEFC46758%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093777%7Cgb%7CEFC47413%2E1%7C.for.54524-55623.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.54524-55623.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.54524-55623.gi%7C284093777%7Cgb%7CEFC47413%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096265%7Cgb%7CEFC49893%2E1%7C.for.54593-55617.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.54593-55617.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.54593-55617.gi%7C284096265%7Cgb%7CEFC49893%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097069%7Cgb%7CEFC50696%2E1%7C.for.54270-57096.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.54270-57096.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.54270-57096.gi%7C284097069%7Cgb%7CEFC50696%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.67970-69036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67970-69036.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67970-69036.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.for.67964-69033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67964-69033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67964-69033.gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.for.68012-69093.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68012-69093.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68012-69093.gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.for.68009-69099.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68009-69099.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68009-69099.gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085992%7Cgb%7CEFC39672%2E1%7C.for.67967-69084.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67967-69084.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67967-69084.gi%7C284085992%7Cgb%7CEFC39672%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.for.67925-69084.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67925-69084.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67925-69084.gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094669%7Cgb%7CEFC48302%2E1%7C.for.67982-69240.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67982-69240.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67982-69240.gi%7C284094669%7Cgb%7CEFC48302%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095843%7Cgb%7CEFC49472%2E1%7C.for.68009-69078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68009-69078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68009-69078.gi%7C284095843%7Cgb%7CEFC49472%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.for.67991-69033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67991-69033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67991-69033.gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.for.67919-69033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67919-69033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67919-69033.gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090138%7Cgb%7CEFC43791%2E1%7C.for.67922-69105.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67922-69105.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67922-69105.gi%7C284090138%7Cgb%7CEFC43791%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.for.68009-69081.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68009-69081.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68009-69081.gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.for.68006-69042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68006-69042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68006-69042.gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.for.67970-69075.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67970-69075.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67970-69075.gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091293%7Cgb%7CEFC44940%2E1%7C.for.67988-69033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67988-69033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67988-69033.gi%7C284091293%7Cgb%7CEFC44940%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097003%7Cgb%7CEFC50630%2E1%7C.for.67994-69042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67994-69042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67994-69042.gi%7C284097003%7Cgb%7CEFC50630%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.for.68012-69039.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68012-69039.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68012-69039.gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083922%7Cgb%7CEFC37620%2E1%7C.for.67943-69015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67943-69015.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67943-69015.gi%7C284083922%7Cgb%7CEFC37620%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086956%7Cgb%7CEFC40629%2E1%7C.for.67598-69087.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67598-69087.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67598-69087.gi%7C284086956%7Cgb%7CEFC40629%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.for.67874-69132.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67874-69132.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67874-69132.gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090146%7Cgb%7CEFC43799%2E1%7C.for.67946-69078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67946-69078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67946-69078.gi%7C284090146%7Cgb%7CEFC43799%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.for.67928-69057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67928-69057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67928-69057.gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.for.67961-69042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67961-69042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67961-69042.gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.for.67856-69054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67856-69054.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67856-69054.gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082394%7Cgb%7CEFC36117%2E1%7C.for.67865-69255.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67865-69255.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67865-69255.gi%7C284082394%7Cgb%7CEFC36117%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090154%7Cgb%7CEFC43807%2E1%7C.for.67946-69105.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67946-69105.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67946-69105.gi%7C284090154%7Cgb%7CEFC43807%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086531%7Cgb%7CEFC40207%2E1%7C.for.67991-69165.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67991-69165.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67991-69165.gi%7C284086531%7Cgb%7CEFC40207%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081757%7Cgb%7CEFC35637%2E1%7C.for.68006-69000.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68006-69000.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68006-69000.gi%7C284081757%7Cgb%7CEFC35637%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.for.68012-68991.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68012-68991.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68012-68991.gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085724%7Cgb%7CEFC39406%2E1%7C.for.67847-69081.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67847-69081.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67847-69081.gi%7C284085724%7Cgb%7CEFC39406%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090243%7Cgb%7CEFC43896%2E1%7C.for.67895-69036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67895-69036.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67895-69036.gi%7C284090243%7Cgb%7CEFC43896%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090143%7Cgb%7CEFC43796%2E1%7C.for.67946-69078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67946-69078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67946-69078.gi%7C284090143%7Cgb%7CEFC43796%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.for.67889-69003.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67889-69003.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67889-69003.gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.for.67961-69060.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67961-69060.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67961-69060.gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083967%7Cgb%7CEFC37665%2E1%7C.for.67934-69036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67934-69036.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67934-69036.gi%7C284083967%7Cgb%7CEFC37665%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.for.68009-69033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68009-69033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68009-69033.gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087676%7Cgb%7CEFC41344%2E1%7C.for.67853-69180.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67853-69180.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67853-69180.gi%7C284087676%7Cgb%7CEFC41344%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.for.68033-69018.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68033-69018.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68033-69018.gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097074%7Cgb%7CEFC50701%2E1%7C.for.70651-71597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.70651-71597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.70651-71597.gi%7C284097074%7Cgb%7CEFC50701%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089534%7Cgb%7CEFC43191%2E1%7C.for.71334-73035.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.71334-73035.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.71334-73035.gi%7C284089534%7Cgb%7CEFC43191%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081900%7Cgb%7CEFC35731%2E1%7C.for.74620-75881.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.74620-75881.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.74620-75881.gi%7C284081900%7Cgb%7CEFC35731%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090744%7Cgb%7CEFC44394%2E1%7C.for.78118-79271.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.78118-79271.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.78118-79271.gi%7C284090744%7Cgb%7CEFC44394%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081997%7Cgb%7CEFC35800%2E1%7C.for.100561-101797.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.100561-101797.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.100561-101797.gi%7C284081997%7Cgb%7CEFC35800%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093069%7Cgb%7CEFC46708%2E1%7C.for.99379-101743.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99379-101743.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99379-101743.gi%7C284093069%7Cgb%7CEFC46708%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092634%7Cgb%7CEFC46275%2E1%7C.for.101489-103371.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.101489-103371.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.101489-103371.gi%7C284092634%7Cgb%7CEFC46275%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C313471368%7Csp%7CD2VAA9%2E1%7CMTNA_NAEGR.for.101489-103371.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.101489-103371.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.101489-103371.gi%7C313471368%7Csp%7CD2VAA9%2E1%7CMTNA_NAEGR.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084488%7Cgb%7CEFC38180%2E1%7C.for.121181-125102.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.121181-125102.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.121181-125102.gi%7C284084488%7Cgb%7CEFC38180%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093795%7Cgb%7CEFC47431%2E1%7C.for.124481-127583.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.124481-127583.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.124481-127583.gi%7C284093795%7Cgb%7CEFC47431%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093047%7Cgb%7CEFC46686%2E1%7C.for.124481-127362.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.124481-127362.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.124481-127362.gi%7C284093047%7Cgb%7CEFC46686%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:16 now processing 0 total clusters:16 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:16 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:16 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:16 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:13 now processing 0 total clusters:13 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:13 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:13 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:13 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:25 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:32 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.659-1586.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.659-1586.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.659-1586.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.7424-8549.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.7424-8549.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.7424-8549.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.27714-29394.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.27714-29394.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.27714-29394.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.33003-36835.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.33003-36835.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.33003-36835.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.38689-39942.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.38689-39942.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.38689-39942.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.40196-40985.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.40196-40985.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.40196-40985.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.41120-43127.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.41120-43127.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.41120-43127.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.46620-48482.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.46620-48482.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.46620-48482.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.48735-53160.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.48735-53160.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.48735-53160.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.54469-57843.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.54469-57843.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.54469-57843.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.82728-84694.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.82728-84694.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.82728-84694.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.88291-89969.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.88291-89969.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.88291-89969.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.90776-91798.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.90776-91798.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.90776-91798.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.103175-104273.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.103175-104273.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.103175-104273.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.106000-107152.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.106000-107152.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.106000-107152.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.115098-118041.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.115098-118041.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.115098-118041.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.118266-125063.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.118266-125063.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.118266-125063.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.5656-7004.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.5656-7004.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.5656-7004.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.8165-15319.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.8165-15319.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.8165-15319.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.15492-17482.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.15492-17482.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.15492-17482.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.20059-20981.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.20059-20981.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.20059-20981.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.27054-28008.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.27054-28008.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.27054-28008.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.30350-33219.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.30350-33219.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.30350-33219.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.42770-44566.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.42770-44566.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.42770-44566.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.57803-68899.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.57803-68899.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.57803-68899.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.69283-71456.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.69283-71456.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.69283-71456.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.71533-72835.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.71533-72835.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.71533-72835.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.74767-79071.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.74767-79071.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.74767-79071.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.84881-88071.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.84881-88071.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.84881-88071.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.92125-93011.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.92125-93011.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.92125-93011.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.97442-103171.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.97442-103171.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.97442-103171.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.124680-127383.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.124680-127383.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.124680-127383.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.130866-131713.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.130866-131713.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.130866-131713.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.138901-139874.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.138901-139874.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.138901-139874.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C29 Length: 126079 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C29.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C29.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:10 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:11 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:14 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:8 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:8 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8179%7Cnormalized.for.1097-2149.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.1097-2149.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.1097-2149.Ar_EST_120301b_rep_c8179%7Cnormalized.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7835%7Cfamily.for.3368-4459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.3368-4459.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.3368-4459.Ar_EST_120301b_c7835%7Cfamily.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c578%7Clow.for.4287-5641.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.4287-5641.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.4287-5641.Ar_EST_120301b_c578%7Clow.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17375%7C021030oocx024022ht.for.5051-6566.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.5051-6566.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.5051-6566.Ar_EST_120301b_c17375%7C021030oocx024022ht.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3629%7Cc2.for.7817-9651.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.7817-9651.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.7817-9651.Ar_EST_120301b_c3629%7Cc2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17542%7Calpha.for.8880-10271.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.8880-10271.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.8880-10271.Ar_EST_120301b_c17542%7Calpha.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4486%7Calpha-galactosidase.for.10166-11409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.10166-11409.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.10166-11409.Ar_EST_120301b_rep_c4486%7Calpha-galactosidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3978%7Calpha-galactosidase.for.10095-11343.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.10095-11343.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.10095-11343.Ar_EST_120301b_c3978%7Calpha-galactosidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig607%7Calpha-galactosidase.for.10102-12189.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.10102-12189.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.10102-12189.120301b_Contig607%7Calpha-galactosidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13874%7CDEHA2F26840p.for.10109-11040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.10109-11040.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.10109-11040.Ar_EST_120301b_rep_c13874%7CDEHA2F26840p.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4318%7Cactin-related.for.15717-17094.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.15717-17094.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.15717-17094.Ar_EST_120301b_rep_c4318%7Cactin-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2448%7Cprotein.for.18162-20068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.18162-20068.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.18162-20068.Ar_EST_120301b_c2448%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1643%7Cgr__ea.for.19898-21165.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.19898-21165.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.19898-21165.Ar_EST_120301b_c1643%7Cgr__ea.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4667%7Cpeptide.for.20507-21836.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.20507-21836.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.20507-21836.Ar_EST_120301b_rep_c4667%7Cpeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13946%7Cfm062691.for.23870-25166.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.23870-25166.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.23870-25166.Ar_EST_120301b_c13946%7Cfm062691.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c822%7Cadenylate.for.25563-26995.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.25563-26995.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.25563-26995.Ar_EST_120301b_c822%7Cadenylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15716%7Chypothetical.for.30116-31920.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.30116-31920.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.30116-31920.Ar_EST_120301b_c15716%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8109%7Cpredicted.for.33231-34533.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.33231-34533.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.33231-34533.Ar_EST_120301b_c8109%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3842%7Cmagnesium.for.34224-36102.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.34224-36102.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.34224-36102.Ar_EST_120301b_c3842%7Cmagnesium.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11375%7Cepsin.for.37842-39172.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.37842-39172.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.37842-39172.Ar_EST_120301b_c11375%7Cepsin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17650%7Ccre-myo-3.for.38846-40560.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.38846-40560.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.38846-40560.Ar_EST_120301b_c17650%7Ccre-myo-3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17315%7Cheat.for.39637-40968.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.39637-40968.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.39637-40968.Ar_EST_120301b_c17315%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18116%7C-like.for.42889-44275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.42889-44275.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.42889-44275.Ar_EST_120301b_c18116%7C-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig816%7Cwd.for.43860-45874.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.43860-45874.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.43860-45874.120301b_Contig816%7Cwd.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9517%7Ccfnw.for.45449-46761.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.45449-46761.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.45449-46761.Ar_EST_120301b_c9517%7Ccfnw.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13557%7Crhomboid.for.48933-50436.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.48933-50436.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.48933-50436.Ar_EST_120301b_c13557%7Crhomboid.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2074%7C39s.for.52467-53984.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.52467-53984.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.52467-53984.Ar_EST_120301b_c2074%7C39s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12950%7Cnad.for.52392-53486.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.52392-53486.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.52392-53486.Ar_EST_120301b_c12950%7Cnad.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2064%7Cdna.for.53309-55811.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.53309-55811.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.53309-55811.Ar_EST_120301b_c2064%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20272%7Cdna.for.55582-57416.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.55582-57416.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.55582-57416.Ar_EST_120301b_c20272%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8469%7Ccatalytic.for.55014-56440.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.55014-56440.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.55014-56440.Ar_EST_120301b_c8469%7Ccatalytic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14008%7Creplication.for.58157-59604.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.58157-59604.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.58157-59604.Ar_EST_120301b_c14008%7Creplication.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17948%7C2-oxoacid.for.68615-69892.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.68615-69892.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.68615-69892.Ar_EST_120301b_c17948%7C2-oxoacid.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17240%7Cfy373865.for.71171-72567.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.71171-72567.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.71171-72567.Ar_EST_120301b_c17240%7Cfy373865.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig278%7Cprotein.for.70529-73090.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.70529-73090.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.70529-73090.120301b_Contig278%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12757%7Cnormalized.for.73057-74393.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.73057-74393.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.73057-74393.Ar_EST_120301b_c12757%7Cnormalized.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19042%7Cmannan-binding.for.82056-83763.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.82056-83763.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.82056-83763.Ar_EST_120301b_c19042%7Cmannan-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7939%7Cmannan-binding.for.82082-83494.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.82082-83494.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.82082-83494.Ar_EST_120301b_c7939%7Cmannan-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19195%7Cpredicted.for.84202-85409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.84202-85409.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.84202-85409.Ar_EST_120301b_c19195%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9407%7Cpredicted.for.84534-85789.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.84534-85789.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.84534-85789.Ar_EST_120301b_c9407%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c975%7Cphospholipase.for.85526-86849.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.85526-86849.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.85526-86849.Ar_EST_120301b_c975%7Cphospholipase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18766%7Cprotein.for.86248-87871.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.86248-87871.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.86248-87871.Ar_EST_120301b_c18766%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8008%7Cest_omyk_evo_818589.for.86726-88045.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.86726-88045.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.86726-88045.Ar_EST_120301b_c8008%7Cest_omyk_evo_818589.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16106%7Cmm1-0024t-m079-a10-.for.87327-88533.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.87327-88533.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.87327-88533.Ar_EST_120301b_c16106%7Cmm1-0024t-m079-a10-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig780%7Cfy580029.for.88294-89812.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.88294-89812.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.88294-89812.120301b_Contig780%7Cfy580029.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3543%7Cdcn1-like.for.89436-91029.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.89436-91029.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.89436-91029.Ar_EST_120301b_c3543%7Cdcn1-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2727%7Cskp1-like.for.90317-92010.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.90317-92010.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.90317-92010.Ar_EST_120301b_c2727%7Cskp1-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13307%7Chypothetical.for.91504-92833.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.91504-92833.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.91504-92833.Ar_EST_120301b_c13307%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8761%7Cplant.for.92721-94535.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.92721-94535.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.92721-94535.Ar_EST_120301b_c8761%7Cplant.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18653%7Cvacuolar.for.94821-96247.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.94821-96247.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.94821-96247.Ar_EST_120301b_c18653%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7779%7Cribosomal.for.95438-97086.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.95438-97086.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.95438-97086.Ar_EST_120301b_c7779%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19859%7Cvam6.for.96081-98261.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.96081-98261.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.96081-98261.Ar_EST_120301b_c19859%7Cvam6.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19889%7Cam524334.for.94360-95913.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.94360-95913.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.94360-95913.Ar_EST_120301b_c19889%7Cam524334.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2947%7Coxoglutarate.for.102452-104208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.102452-104208.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.102452-104208.Ar_EST_120301b_c2947%7Coxoglutarate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3312%7Coxoglutarate.for.100584-102407.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.100584-102407.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.100584-102407.Ar_EST_120301b_c3312%7Coxoglutarate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8241%7Coxoglutarate.for.101538-103504.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.101538-103504.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.101538-103504.Ar_EST_120301b_c8241%7Coxoglutarate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c827%7Cxanthine.for.103424-104780.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.103424-104780.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.103424-104780.Ar_EST_120301b_c827%7Cxanthine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3666%7Cxanthine.for.103935-106710.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.103935-106710.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.103935-106710.Ar_EST_120301b_c3666%7Cxanthine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c76%7Cxanthine.for.106048-107728.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.106048-107728.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.106048-107728.Ar_EST_120301b_c76%7Cxanthine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13578%7Cxanthine.for.107198-108391.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.107198-108391.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.107198-108391.Ar_EST_120301b_c13578%7Cxanthine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15340%7C---NA---.for.108866-110095.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.108866-110095.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.108866-110095.Ar_EST_120301b_c15340%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14806%7Cubiquitin.for.112126-113439.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.112126-113439.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.112126-113439.Ar_EST_120301b_c14806%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10754%7Cfs549801.for.114432-115482.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.114432-115482.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.114432-115482.Ar_EST_120301b_c10754%7Cfs549801.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2885%7Catp-dependent.for.114881-116819.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.114881-116819.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.114881-116819.Ar_EST_120301b_c2885%7Catp-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16854%7Ccns.for.115963-117321.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.115963-117321.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.115963-117321.Ar_EST_120301b_c16854%7Ccns.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1234%7Cextracellular.for.116926-119073.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.116926-119073.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.116926-119073.Ar_EST_120301b_c1234%7Cextracellular.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18156%7Cest_bsai_evw_1261795.for.118556-119843.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.118556-119843.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.118556-119843.Ar_EST_120301b_c18156%7Cest_bsai_evw_1261795.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16679%7C---NA---.for.119682-120970.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.119682-120970.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.119682-120970.Ar_EST_120301b_c16679%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15340%7C---NA---.for.121298-122521.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.121298-122521.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.121298-122521.Ar_EST_120301b_c15340%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7264%7Celongation.for.122454-123795.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122454-123795.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122454-123795.Ar_EST_120301b_rep_c7264%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7231%7Ctranslation.for.122649-123799.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122649-123799.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122649-123799.Ar_EST_120301b_rep_c7231%7Ctranslation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19680%7Celongation.for.122972-124120.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122972-124120.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122972-124120.Ar_EST_120301b_rep_c19680%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5056%7Celongation.for.123236-124322.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123236-124322.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123236-124322.Ar_EST_120301b_rep_c5056%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20204%7Celongation.for.123352-124343.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123352-124343.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123352-124343.Ar_EST_120301b_rep_c20204%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4033%7Celongation.for.122354-124484.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122354-124484.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122354-124484.Ar_EST_120301b_rep_c4033%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig612%7Celongation.for.123121-124432.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123121-124432.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123121-124432.120301b_Contig612%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7205%7Ctranslation.for.122978-124036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122978-124036.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122978-124036.Ar_EST_120301b_rep_c7205%7Ctranslation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15762%7Celongation.for.123409-124481.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123409-124481.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123409-124481.Ar_EST_120301b_rep_c15762%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig613%7Celongation.for.122770-124010.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122770-124010.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122770-124010.120301b_Contig613%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18610%7Celongation.for.123405-124479.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123405-124479.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123405-124479.Ar_EST_120301b_rep_c18610%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5963%7Celongation.for.122376-123486.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122376-123486.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122376-123486.Ar_EST_120301b_rep_c5963%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20041%7Celongation.for.122393-123437.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122393-123437.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122393-123437.Ar_EST_120301b_rep_c20041%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5394%7Celongation.for.122479-123583.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122479-123583.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122479-123583.Ar_EST_120301b_rep_c5394%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8943%7Celongation.for.123127-124102.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123127-124102.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123127-124102.Ar_EST_120301b_c8943%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7169%7Celongation.for.123192-124250.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123192-124250.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123192-124250.Ar_EST_120301b_rep_c7169%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5382%7Celongation.for.123276-124266.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123276-124266.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123276-124266.Ar_EST_120301b_rep_c5382%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4827%7Celongation.for.122343-123988.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122343-123988.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122343-123988.Ar_EST_120301b_rep_c4827%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16096%7Celongation.for.122363-123545.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122363-123545.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122363-123545.Ar_EST_120301b_rep_c16096%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7219%7Ctranslation.for.122603-123858.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122603-123858.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122603-123858.Ar_EST_120301b_rep_c7219%7Ctranslation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7236%7Celongation.for.122883-124068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122883-124068.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122883-124068.Ar_EST_120301b_rep_c7236%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19915%7Celongation.for.123442-124484.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123442-124484.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123442-124484.Ar_EST_120301b_rep_c19915%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5477%7Celongation.for.122462-123491.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122462-123491.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122462-123491.Ar_EST_120301b_rep_c5477%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19970%7Celongation.for.123399-124493.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123399-124493.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123399-124493.Ar_EST_120301b_rep_c19970%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7042%7Ctranslation.for.122885-124003.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122885-124003.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122885-124003.Ar_EST_120301b_rep_c7042%7Ctranslation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6990%7Celongation.for.122895-124193.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122895-124193.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122895-124193.Ar_EST_120301b_rep_c6990%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7719%7Celongation.for.123277-124464.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123277-124464.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123277-124464.Ar_EST_120301b_rep_c7719%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5354%7Celongation.for.123442-124478.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123442-124478.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123442-124478.Ar_EST_120301b_rep_c5354%7Celongation.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:51 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:51 now processing 0 total clusters:51 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:51 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 ...processing 0 of 10 ...processing 1 of 10 ...processing 2 of 10 ...processing 3 of 10 ...processing 4 of 10 ...processing 5 of 10 ...processing 6 of 10 ...processing 7 of 10 ...processing 8 of 10 ...processing 9 of 10 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:37 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:30 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:35 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:43 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:33 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:29 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:31 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:35 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:24 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094796%7Cgb%7CEFC48429%2E1%7C.for.15642-17017.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.15642-17017.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.15642-17017.gi%7C284094796%7Cgb%7CEFC48429%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082488%7Cgb%7CEFC36205%2E1%7C.for.16488-18115.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.16488-18115.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.16488-18115.gi%7C284082488%7Cgb%7CEFC36205%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087289%7Cgb%7CEFC40960%2E1%7C.for.17992-20585.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.17992-20585.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.17992-20585.gi%7C284087289%7Cgb%7CEFC40960%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095823%7Cgb%7CEFC49452%2E1%7C.for.20546-21798.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.20546-21798.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.20546-21798.gi%7C284095823%7Cgb%7CEFC49452%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083472%7Cgb%7CEFC37175%2E1%7C.for.23710-24791.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.23710-24791.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.23710-24791.gi%7C284083472%7Cgb%7CEFC37175%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093407%7Cgb%7CEFC47045%2E1%7C.for.33790-35729.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.33790-35729.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.33790-35729.gi%7C284093407%7Cgb%7CEFC47045%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088682%7Cgb%7CEFC42344%2E1%7C.for.43774-45818.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.43774-45818.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.43774-45818.gi%7C284088682%7Cgb%7CEFC42344%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090843%7Cgb%7CEFC44493%2E1%7C.for.51653-52746.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.51653-52746.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.51653-52746.gi%7C284090843%7Cgb%7CEFC44493%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085714%7Cgb%7CEFC39396%2E1%7C.for.52255-54015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.52255-54015.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.52255-54015.gi%7C284085714%7Cgb%7CEFC39396%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089155%7Cgb%7CEFC42814%2E1%7C.for.53275-57104.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.53275-57104.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.53275-57104.gi%7C284089155%7Cgb%7CEFC42814%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086989%7Cgb%7CEFC40662%2E1%7C.for.58507-59883.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.58507-59883.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.58507-59883.gi%7C284086989%7Cgb%7CEFC40662%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096971%7Cgb%7CEFC50598%2E1%7C.for.57951-59898.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.57951-59898.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.57951-59898.gi%7C284096971%7Cgb%7CEFC50598%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092099%7Cgb%7CEFC45742%2E1%7C.for.60927-63829.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.60927-63829.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.60927-63829.gi%7C284092099%7Cgb%7CEFC45742%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088599%7Cgb%7CEFC42262%2E1%7C.for.67523-68880.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.67523-68880.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.67523-68880.gi%7C284088599%7Cgb%7CEFC42262%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087974%7Cgb%7CEFC41640%2E1%7C.for.89522-91023.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.89522-91023.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.89522-91023.gi%7C284087974%7Cgb%7CEFC41640%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094695%7Cgb%7CEFC48328%2E1%7C.for.101040-104240.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.101040-104240.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.101040-104240.gi%7C284094695%7Cgb%7CEFC48328%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087414%7Cgb%7CEFC41084%2E1%7C.for.100661-104243.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.100661-104243.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.100661-104243.gi%7C284087414%7Cgb%7CEFC41084%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080893%7Cgb%7CEFC35223%2E1%7C.for.103783-105176.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.103783-105176.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.103783-105176.gi%7C284080893%7Cgb%7CEFC35223%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095600%7Cgb%7CEFC49230%2E1%7C.for.103573-108452.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.103573-108452.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.103573-108452.gi%7C284095600%7Cgb%7CEFC49230%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089171%7Cgb%7CEFC42830%2E1%7C.for.107194-108455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.107194-108455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.107194-108455.gi%7C284089171%7Cgb%7CEFC42830%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081083%7Cgb%7CEFC35289%2E1%7C.for.104227-105854.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.104227-105854.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.104227-105854.gi%7C284081083%7Cgb%7CEFC35289%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082443%7Cgb%7CEFC36161%2E1%7C.for.117710-118968.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.117710-118968.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.117710-118968.gi%7C284082443%7Cgb%7CEFC36161%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090531%7Cgb%7CEFC44182%2E1%7C.for.122379-124477.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122379-124477.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122379-124477.gi%7C284090531%7Cgb%7CEFC44182%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096603%7Cgb%7CEFC50231%2E1%7C.for.122379-124477.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122379-124477.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122379-124477.gi%7C284096603%7Cgb%7CEFC50231%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084223%7Cgb%7CEFC37918%2E1%7C.for.122379-124477.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122379-124477.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122379-124477.gi%7C284084223%7Cgb%7CEFC37918%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C84105357%7Cgb%7CABC54650%2E1%7C.for.122424-124411.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122424-124411.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122424-124411.gi%7C84105357%7Cgb%7CABC54650%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:15 now processing 0 total clusters:15 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:28 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:28 now processing 0 total clusters:28 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:28 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 2 ...processing 1 of 2 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 10 ...processing 1 of 10 ...processing 2 of 10 ...processing 3 of 10 ...processing 4 of 10 ...processing 5 of 10 ...processing 6 of 10 ...processing 7 of 10 ...processing 8 of 10 ...processing 9 of 10 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.1215-2144.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.1215-2144.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.1215-2144.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.4486-6372.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.4486-6372.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.4486-6372.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.7893-9451.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.7893-9451.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.7893-9451.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.10244-11989.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.10244-11989.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.10244-11989.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.20696-21639.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.20696-21639.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.20696-21639.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.24069-24966.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.24069-24966.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.24069-24966.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.33430-34333.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.33430-34333.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.33430-34333.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.38041-40366.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.38041-40366.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.38041-40366.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.43973-46561.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.43973-46561.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.43973-46561.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.52454-53815.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.52454-53815.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.52454-53815.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.70728-74193.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.70728-74193.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.70728-74193.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.82281-83294.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.82281-83294.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.82281-83294.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.84401-85589.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.84401-85589.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.84401-85589.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.85725-88333.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.85725-88333.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.85725-88333.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.88493-89612.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.88493-89612.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.88493-89612.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.89634-90829.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.89634-90829.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.89634-90829.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.94500-98061.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.94500-98061.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.94500-98061.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.100857-104580.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.100857-104580.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.100857-104580.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.109065-109895.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.109065-109895.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.109065-109895.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.112325-113239.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.112325-113239.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.112325-113239.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.121491-122321.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.121491-122321.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.121491-122321.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.9079-10071.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.9079-10071.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.9079-10071.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.15841-17915.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.15841-17915.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.15841-17915.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.18361-19868.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.18361-19868.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.18361-19868.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.20097-20965.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.20097-20965.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.20097-20965.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.25760-26795.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.25760-26795.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.25760-26795.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.33989-35902.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.33989-35902.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.33989-35902.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.43088-44075.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.43088-44075.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.43088-44075.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.49132-50236.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.49132-50236.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.49132-50236.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.51852-52546.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.51852-52546.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.51852-52546.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.53474-57216.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.53474-57216.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.53474-57216.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.58150-59698.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.58150-59698.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.58150-59698.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.61126-63629.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.61126-63629.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.61126-63629.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.90516-92633.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.90516-92633.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.90516-92633.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.92920-94335.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.92920-94335.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.92920-94335.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.103772-108252.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.103772-108252.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.103772-108252.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.116162-117121.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.116162-117121.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.116162-117121.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.117125-119712.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.117125-119712.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.117125-119712.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.119872-120770.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.119872-120770.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.119872-120770.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.122543-124287.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.122543-124287.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.122543-124287.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C30 Length: 54314 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:2 current j:0 j_size:2 current j:1 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C30.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C30.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig893%7Catp-binding.for.466-2557.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.466-2557.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.466-2557.120301b_Contig893%7Catp-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10773%7Cabc.for.1870-3393.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1870-3393.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1870-3393.Ar_EST_120301b_c10773%7Cabc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4126%7Chypothetical.for.2863-4751.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.2863-4751.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.2863-4751.Ar_EST_120301b_rep_c4126%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6273%7Cprotein.for.3309-4727.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.3309-4727.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.3309-4727.Ar_EST_120301b_rep_c6273%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15582%7C---NA---.for.3691-4637.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.3691-4637.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.3691-4637.Ar_EST_120301b_rep_c15582%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12926%7Ccchx.for.7094-8380.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.7094-8380.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.7094-8380.Ar_EST_120301b_c12926%7Ccchx.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17763%7Cdna.for.8313-9673.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.8313-9673.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.8313-9673.Ar_EST_120301b_c17763%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4571%7Cspry.for.12651-15061.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.12651-15061.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.12651-15061.Ar_EST_120301b_rep_c4571%7Cspry.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4942%7Cspry.for.12752-14477.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.12752-14477.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.12752-14477.Ar_EST_120301b_rep_c4942%7Cspry.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19099%7Cnabrp89tf.for.15014-16243.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.15014-16243.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.15014-16243.Ar_EST_120301b_rep_c19099%7Cnabrp89tf.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6660%7Cbasal.for.30092-32127.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.30092-32127.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.30092-32127.Ar_EST_120301b_rep_c6660%7Cbasal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18311%7Cnuclear.for.32038-33497.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.32038-33497.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.32038-33497.Ar_EST_120301b_c18311%7Cnuclear.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16390%7Catp-dependent.for.32819-34056.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.32819-34056.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.32819-34056.Ar_EST_120301b_c16390%7Catp-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11194%7Cpredicted.for.38415-39629.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.38415-39629.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.38415-39629.Ar_EST_120301b_c11194%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig234%7Chypothetical.for.39994-41974.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.39994-41974.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.39994-41974.120301b_Contig234%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10235%7Cprotein.for.39033-40812.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.39033-40812.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.39033-40812.Ar_EST_120301b_c10235%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2809%7Cprotein.for.42500-43683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.42500-43683.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.42500-43683.Ar_EST_120301b_c2809%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8390%7Clarv027tr.for.41927-43429.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.41927-43429.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.41927-43429.Ar_EST_120301b_c8390%7Clarv027tr.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3793%7Ctpr.for.43881-45649.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.43881-45649.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.43881-45649.Ar_EST_120301b_c3793%7Ctpr.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10560%7C015b07_011507c.for.45034-46189.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.45034-46189.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.45034-46189.Ar_EST_120301b_c10560%7C015b07_011507c.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6594%7Ceukaryotic.for.46490-48119.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.46490-48119.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.46490-48119.Ar_EST_120301b_rep_c6594%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12692%7Cdna-binding.for.47435-48595.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.47435-48595.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.47435-48595.Ar_EST_120301b_c12692%7Cdna-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3672%7Ccold.for.47988-49845.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.47988-49845.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.47988-49845.Ar_EST_120301b_c3672%7Ccold.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:17 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:19 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:17 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:16 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:14 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:19 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:13 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:14 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:14 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:17 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082638%7Cgb%7CEFC36352%2E1%7C.for.1529-3354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3354.gi%7C284082638%7Cgb%7CEFC36352%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089041%7Cgb%7CEFC42701%2E1%7C.for.742-3363.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.742-3363.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.742-3363.gi%7C284089041%7Cgb%7CEFC42701%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096503%7Cgb%7CEFC50131%2E1%7C.for.1526-3375.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1526-3375.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1526-3375.gi%7C284096503%7Cgb%7CEFC50131%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086918%7Cgb%7CEFC40591%2E1%7C.for.1529-3375.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3375.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3375.gi%7C284086918%7Cgb%7CEFC40591%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091223%7Cgb%7CEFC44871%2E1%7C.for.1529-3369.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3369.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3369.gi%7C284091223%7Cgb%7CEFC44871%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096824%7Cgb%7CEFC50451%2E1%7C.for.1784-3351.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1784-3351.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1784-3351.gi%7C284096824%7Cgb%7CEFC50451%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086695%7Cgb%7CEFC40370%2E1%7C.for.2225-3375.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.2225-3375.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.2225-3375.gi%7C284086695%7Cgb%7CEFC40370%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093963%7Cgb%7CEFC47599%2E1%7C.for.1535-3354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1535-3354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1535-3354.gi%7C284093963%7Cgb%7CEFC47599%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089381%7Cgb%7CEFC43039%2E1%7C.for.1529-3369.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3369.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3369.gi%7C284089381%7Cgb%7CEFC43039%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086532%7Cgb%7CEFC40208%2E1%7C.for.1598-3348.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1598-3348.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1598-3348.gi%7C284086532%7Cgb%7CEFC40208%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092043%7Cgb%7CEFC45687%2E1%7C.for.1529-3354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3354.gi%7C284092043%7Cgb%7CEFC45687%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085363%7Cgb%7CEFC39047%2E1%7C.for.1529-3354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3354.gi%7C284085363%7Cgb%7CEFC39047%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083990%7Cgb%7CEFC37687%2E1%7C.for.1520-3351.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1520-3351.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1520-3351.gi%7C284083990%7Cgb%7CEFC37687%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083848%7Cgb%7CEFC37547%2E1%7C.for.1535-3351.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1535-3351.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1535-3351.gi%7C284083848%7Cgb%7CEFC37547%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086873%7Cgb%7CEFC40547%2E1%7C.for.1625-3363.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1625-3363.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1625-3363.gi%7C284086873%7Cgb%7CEFC40547%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083434%7Cgb%7CEFC37137%2E1%7C.for.1535-3354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1535-3354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1535-3354.gi%7C284083434%7Cgb%7CEFC37137%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094052%7Cgb%7CEFC47687%2E1%7C.for.1547-3354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1547-3354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1547-3354.gi%7C284094052%7Cgb%7CEFC47687%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085442%7Cgb%7CEFC39126%2E1%7C.for.1529-3354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3354.gi%7C284085442%7Cgb%7CEFC39126%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092675%7Cgb%7CEFC46316%2E1%7C.for.1535-3369.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1535-3369.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1535-3369.gi%7C284092675%7Cgb%7CEFC46316%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083453%7Cgb%7CEFC37156%2E1%7C.for.1523-3363.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1523-3363.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1523-3363.gi%7C284083453%7Cgb%7CEFC37156%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085964%7Cgb%7CEFC39644%2E1%7C.for.1823-3354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1823-3354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1823-3354.gi%7C284085964%7Cgb%7CEFC39644%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096783%7Cgb%7CEFC50410%2E1%7C.for.11072-13224.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.11072-13224.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.11072-13224.gi%7C284096783%7Cgb%7CEFC50410%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084703%7Cgb%7CEFC38393%2E1%7C.for.24850-25808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.24850-25808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.24850-25808.gi%7C284084703%7Cgb%7CEFC38393%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088237%7Cgb%7CEFC41902%2E1%7C.for.37067-38139.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.37067-38139.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.37067-38139.gi%7C284088237%7Cgb%7CEFC41902%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088261%7Cgb%7CEFC41926%2E1%7C.for.36988-38142.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.36988-38142.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.36988-38142.gi%7C284088261%7Cgb%7CEFC41926%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085648%7Cgb%7CEFC39330%2E1%7C.for.39406-40370.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.39406-40370.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.39406-40370.gi%7C284085648%7Cgb%7CEFC39330%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:2 now processing 0 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:2 now processing 0 in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:2 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:2 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:11 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.941-4551.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.941-4551.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.941-4551.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.7293-8180.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.7293-8180.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.7293-8180.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.8512-9473.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.8512-9473.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.8512-9473.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.11271-13024.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.11271-13024.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.11271-13024.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.30291-31960.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.30291-31960.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.30291-31960.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.32237-33865.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.32237-33865.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.32237-33865.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.39232-41792.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.39232-41792.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.39232-41792.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.42126-43343.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.42126-43343.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.42126-43343.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.3881-4437.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.3881-4437.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.3881-4437.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.12850-14861.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.12850-14861.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.12850-14861.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.15213-16051.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.15213-16051.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.15213-16051.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.44080-45989.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.44080-45989.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.44080-45989.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.46689-48014.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.46689-48014.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.46689-48014.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.48187-49645.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.48187-49645.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.48187-49645.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C33 Length: 138103 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C33.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C33.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:4 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10865%7Cn-terminal.for.2033-3700.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.2033-3700.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.2033-3700.Ar_EST_120301b_c10865%7Cn-terminal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8426%7Cinositol.for.9692-11354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.9692-11354.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.9692-11354.Ar_EST_120301b_c8426%7Cinositol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3091%7Cadipose-regulatory.for.13714-15674.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.13714-15674.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.13714-15674.Ar_EST_120301b_c3091%7Cadipose-regulatory.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14794%7Cfs962201.for.15139-16417.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.15139-16417.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.15139-16417.Ar_EST_120301b_c14794%7Cfs962201.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13215%7Cankyrin.for.15913-17182.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.15913-17182.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.15913-17182.Ar_EST_120301b_c13215%7Cankyrin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13475%7Ctransformer-sr.for.16806-18266.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.16806-18266.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.16806-18266.Ar_EST_120301b_rep_c13475%7Ctransformer-sr.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19625%7Cgtp-binding.for.18288-19294.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.18288-19294.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.18288-19294.Ar_EST_120301b_rep_c19625%7Cgtp-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c57%7Cdevelopmentally.for.17581-19507.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.17581-19507.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.17581-19507.Ar_EST_120301b_c57%7Cdevelopmentally.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9143%7Ccatf.for.20396-21844.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.20396-21844.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.20396-21844.Ar_EST_120301b_rep_c9143%7Ccatf.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18330%7Ccafy.for.21621-22865.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.21621-22865.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.21621-22865.Ar_EST_120301b_c18330%7Ccafy.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig221%7Cfp601087.for.22358-24862.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.22358-24862.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.22358-24862.120301b_Contig221%7Cfp601087.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c250%7Cv-myb.for.26371-29070.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.26371-29070.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.26371-29070.Ar_EST_120301b_c250%7Cv-myb.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2206%7C280438371.for.27937-29275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.27937-29275.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.27937-29275.Ar_EST_120301b_c2206%7C280438371.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17101%7Cche.for.28883-30363.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.28883-30363.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.28883-30363.Ar_EST_120301b_c17101%7Cche.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12076%7C---NA---.for.28960-30054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.28960-30054.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.28960-30054.Ar_EST_120301b_c12076%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5943%7Csyntaxin-binding.for.30851-32397.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.30851-32397.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.30851-32397.Ar_EST_120301b_rep_c5943%7Csyntaxin-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4805%7Csyntaxin.for.29991-32900.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.29991-32900.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.29991-32900.Ar_EST_120301b_rep_c4805%7Csyntaxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9158%7Csec1-like.for.31452-32914.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.31452-32914.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.31452-32914.Ar_EST_120301b_c9158%7Csec1-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16864%7Csyntaxin.for.31408-32511.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.31408-32511.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.31408-32511.Ar_EST_120301b_rep_c16864%7Csyntaxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16176%7Csyntaxin.for.30212-31558.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.30212-31558.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.30212-31558.Ar_EST_120301b_rep_c16176%7Csyntaxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9532%7Cconserved.for.32392-33871.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.32392-33871.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.32392-33871.Ar_EST_120301b_c9532%7Cconserved.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig434%7Ccell.for.35440-36926.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.35440-36926.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.35440-36926.120301b_Contig434%7Ccell.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17121%7Cgpi.for.37557-39027.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.37557-39027.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.37557-39027.Ar_EST_120301b_c17121%7Cgpi.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1164%7Cbst1_canga.for.38294-40130.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.38294-40130.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.38294-40130.120301b_Contig1164%7Cbst1_canga.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12556%7Col2821f.for.40012-41356.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.40012-41356.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.40012-41356.Ar_EST_120301b_c12556%7Col2821f.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13810%7Cexosome.for.40762-41850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.40762-41850.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.40762-41850.Ar_EST_120301b_c13810%7Cexosome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20565%7Cexosome.for.40975-42051.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.40975-42051.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.40975-42051.Ar_EST_120301b_rep_c20565%7Cexosome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1304%7Cexosome.for.42981-44309.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.42981-44309.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.42981-44309.Ar_EST_120301b_c1304%7Cexosome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20442%7Cexosome.for.43169-44389.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.43169-44389.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.43169-44389.Ar_EST_120301b_c20442%7Cexosome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9428%7Cunconventional.for.45256-46575.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.45256-46575.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.45256-46575.Ar_EST_120301b_c9428%7Cunconventional.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10763%7Cprotein.for.46158-47562.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.46158-47562.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.46158-47562.Ar_EST_120301b_c10763%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8600%7Cprotein.for.47002-48304.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.47002-48304.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.47002-48304.Ar_EST_120301b_c8600%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11770%7Cribonucleoside.for.49566-51011.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.49566-51011.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.49566-51011.Ar_EST_120301b_c11770%7Cribonucleoside.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19499%7Cribonucleoside.for.48600-50066.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.48600-50066.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.48600-50066.Ar_EST_120301b_c19499%7Cribonucleoside.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8020%7Cribonucleoside-triphosphate.for.48907-50444.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.48907-50444.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.48907-50444.Ar_EST_120301b_c8020%7Cribonucleoside-triphosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20281%7Ccation-transporting.for.52923-55212.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.52923-55212.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.52923-55212.Ar_EST_120301b_c20281%7Ccation-transporting.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17555%7Ccation-transporting.for.52392-53740.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.52392-53740.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.52392-53740.Ar_EST_120301b_c17555%7Ccation-transporting.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10588%7Cprobable.for.54509-55821.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.54509-55821.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.54509-55821.Ar_EST_120301b_c10588%7Cprobable.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3266%7Cglycosyltransferase.for.59493-61361.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.59493-61361.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.59493-61361.Ar_EST_120301b_c3266%7Cglycosyltransferase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14384%7Cprotein.for.61027-62292.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.61027-62292.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.61027-62292.Ar_EST_120301b_c14384%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14706%7Capoptosis.for.61337-62285.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.61337-62285.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.61337-62285.Ar_EST_120301b_c14706%7Capoptosis.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4234%7Chypothetical.for.63085-65145.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.63085-65145.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.63085-65145.Ar_EST_120301b_rep_c4234%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6835%7Cleishmanolysin-like.for.63703-64777.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.63703-64777.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.63703-64777.Ar_EST_120301b_rep_c6835%7Cleishmanolysin-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17669%7Chypothetical.for.63308-64533.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.63308-64533.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.63308-64533.Ar_EST_120301b_rep_c17669%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6093%7C---NA---.for.64020-65144.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.64020-65144.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.64020-65144.Ar_EST_120301b_rep_c6093%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11320%7Cpentatricopeptide.for.65970-67270.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.65970-67270.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.65970-67270.Ar_EST_120301b_c11320%7Cpentatricopeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c681%7Chypothetical.for.72906-74211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.72906-74211.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.72906-74211.Ar_EST_120301b_c681%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12804%7Ctype.for.75141-76563.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.75141-76563.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.75141-76563.Ar_EST_120301b_c12804%7Ctype.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6513%7Cmalate.for.80519-82412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.80519-82412.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.80519-82412.Ar_EST_120301b_rep_c6513%7Cmalate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6815%7Cmalate.for.80492-82211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.80492-82211.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.80492-82211.Ar_EST_120301b_rep_c6815%7Cmalate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3066%7Cmalate.for.79932-81736.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.79932-81736.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.79932-81736.Ar_EST_120301b_c3066%7Cmalate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16333%7Ctransport.for.82370-83712.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.82370-83712.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.82370-83712.Ar_EST_120301b_c16333%7Ctransport.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10746%7Cbeige.for.85163-86860.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.85163-86860.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.85163-86860.Ar_EST_120301b_c10746%7Cbeige.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14032%7Ccaxx.for.86480-87826.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.86480-87826.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.86480-87826.Ar_EST_120301b_c14032%7Ccaxx.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12871%7Cpredicted.for.88548-89839.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.88548-89839.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.88548-89839.Ar_EST_120301b_c12871%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15711%7Cbeach.for.89286-90628.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.89286-90628.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.89286-90628.Ar_EST_120301b_c15711%7Cbeach.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13277%7Cpredicted.for.90419-92191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.90419-92191.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.90419-92191.Ar_EST_120301b_c13277%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15589%7Cprotein.for.102548-103609.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.102548-103609.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.102548-103609.Ar_EST_120301b_c15589%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16197%7Cprotein.for.102885-104227.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.102885-104227.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.102885-104227.Ar_EST_120301b_c16197%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c22%7Caminotransferase.for.108878-111199.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.108878-111199.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.108878-111199.Ar_EST_120301b_c22%7Caminotransferase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15277%7Cprotein.for.110958-112022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.110958-112022.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.110958-112022.Ar_EST_120301b_c15277%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5938%7Carginine.for.112004-113875.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.112004-113875.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.112004-113875.Ar_EST_120301b_rep_c5938%7Carginine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12333%7Cfy828944.for.115780-117116.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115780-117116.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115780-117116.Ar_EST_120301b_c12333%7Cfy828944.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14482%7Cprotein.for.116951-118425.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.116951-118425.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.116951-118425.Ar_EST_120301b_c14482%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1997%7Cimpact.for.116977-118066.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.116977-118066.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.116977-118066.Ar_EST_120301b_c1997%7Cimpact.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20372%7C60s.for.118493-119653.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.118493-119653.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.118493-119653.Ar_EST_120301b_rep_c20372%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20437%7C60s.for.118509-119655.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.118509-119655.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.118509-119655.Ar_EST_120301b_rep_c20437%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18561%7C60s.for.118493-119665.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.118493-119665.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.118493-119665.Ar_EST_120301b_rep_c18561%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1306%7Cbay.for.119271-120567.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.119271-120567.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.119271-120567.Ar_EST_120301b_c1306%7Cbay.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11551%7Catp-binding.for.122951-124177.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.122951-124177.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.122951-124177.Ar_EST_120301b_c11551%7Catp-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2796%7Catp-binding.for.122280-123842.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.122280-123842.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.122280-123842.Ar_EST_120301b_c2796%7Catp-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig377%7Csenescence.for.121284-123104.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.121284-123104.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.121284-123104.120301b_Contig377%7Csenescence.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2715%7Catp-binding.for.123362-125173.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.123362-125173.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.123362-125173.Ar_EST_120301b_c2715%7Catp-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15601%7C3-beta.for.124944-126129.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.124944-126129.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.124944-126129.Ar_EST_120301b_c15601%7C3-beta.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1184%7C3-beta.for.125166-126821.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.125166-126821.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.125166-126821.Ar_EST_120301b_c1184%7C3-beta.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1082%7Csyntaxin.for.126182-127650.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.126182-127650.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.126182-127650.120301b_Contig1082%7Csyntaxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14083%7Chypothetical.for.130889-132167.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.130889-132167.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.130889-132167.Ar_EST_120301b_c14083%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2116%7Chat.for.130681-132010.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.130681-132010.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.130681-132010.Ar_EST_120301b_c2116%7Chat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12752%7Cbg01.for.134379-135767.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.134379-135767.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.134379-135767.Ar_EST_120301b_c12752%7Cbg01.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1133%7Cbg04-.for.136477-137733.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.136477-137733.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.136477-137733.Ar_EST_120301b_c1133%7Cbg04-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3822%7Cpiggybac.for.136920-138103.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.136920-138103.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.136920-138103.Ar_EST_120301b_c3822%7Cpiggybac.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c422%7Cmeloidogyne.for.135457-137120.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.135457-137120.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.135457-137120.Ar_EST_120301b_c422%7Cmeloidogyne.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19525%7Caj677057.for.136522-137693.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.136522-137693.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.136522-137693.Ar_EST_120301b_c19525%7Caj677057.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3325%7Cmeloidogyne.for.135463-137087.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.135463-137087.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.135463-137087.Ar_EST_120301b_c3325%7Cmeloidogyne.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8009%7Cbg04-.for.136027-137733.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.136027-137733.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.136027-137733.Ar_EST_120301b_c8009%7Cbg04-.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:55 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:55 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:55 now processing 0 total clusters:55 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:55 now processing 0 total clusters:55 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:55 now processing 0 total clusters:55 now processing 0 ...processing 0 of 2 ...processing 1 of 2 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:29 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:50 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:58 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:52 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:51 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:35 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:33 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091245%7Cgb%7CEFC44893%2E1%7C.for.2058-3448.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.2058-3448.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.2058-3448.gi%7C284091245%7Cgb%7CEFC44893%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088206%7Cgb%7CEFC41871%2E1%7C.for.9726-11381.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.9726-11381.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.9726-11381.gi%7C284088206%7Cgb%7CEFC41871%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090769%7Cgb%7CEFC44419%2E1%7C.for.11879-13257.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.11879-13257.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.11879-13257.gi%7C284090769%7Cgb%7CEFC44419%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092544%7Cgb%7CEFC46186%2E1%7C.for.17599-19499.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.17599-19499.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.17599-19499.gi%7C284092544%7Cgb%7CEFC46186%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085562%7Cgb%7CEFC39245%2E1%7C.for.17599-19490.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.17599-19490.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.17599-19490.gi%7C284085562%7Cgb%7CEFC39245%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092809%7Cgb%7CEFC46449%2E1%7C.for.27176-28278.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.27176-28278.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.27176-28278.gi%7C284092809%7Cgb%7CEFC46449%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088713%7Cgb%7CEFC42375%2E1%7C.for.27173-28341.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.27173-28341.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.27173-28341.gi%7C284088713%7Cgb%7CEFC42375%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097108%7Cgb%7CEFC50735%2E1%7C.for.27176-28269.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.27176-28269.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.27176-28269.gi%7C284097108%7Cgb%7CEFC50735%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096122%7Cgb%7CEFC49751%2E1%7C.for.36570-37856.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.36570-37856.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.36570-37856.gi%7C284096122%7Cgb%7CEFC49751%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097049%7Cgb%7CEFC50676%2E1%7C.for.40766-44415.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.40766-44415.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.40766-44415.gi%7C284097049%7Cgb%7CEFC50676%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082919%7Cgb%7CEFC36629%2E1%7C.for.46933-48362.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.46933-48362.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.46933-48362.gi%7C284082919%7Cgb%7CEFC36629%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092761%7Cgb%7CEFC46402%2E1%7C.for.48607-51519.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.48607-51519.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.48607-51519.gi%7C284092761%7Cgb%7CEFC46402%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096668%7Cgb%7CEFC50295%2E1%7C.for.52038-56344.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.52038-56344.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.52038-56344.gi%7C284096668%7Cgb%7CEFC50295%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090381%7Cgb%7CEFC44033%2E1%7C.for.68085-69508.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.68085-69508.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.68085-69508.gi%7C284090381%7Cgb%7CEFC44033%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089187%7Cgb%7CEFC42846%2E1%7C.for.79484-80433.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.79484-80433.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.79484-80433.gi%7C284089187%7Cgb%7CEFC42846%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088520%7Cgb%7CEFC42183%2E1%7C.for.83220-85117.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.83220-85117.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.83220-85117.gi%7C284088520%7Cgb%7CEFC42183%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096554%7Cgb%7CEFC50182%2E1%7C.for.102484-104225.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.102484-104225.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.102484-104225.gi%7C284096554%7Cgb%7CEFC50182%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091744%7Cgb%7CEFC45389%2E1%7C.for.102814-104225.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.102814-104225.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.102814-104225.gi%7C284091744%7Cgb%7CEFC45389%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089709%7Cgb%7CEFC43365%2E1%7C.for.110724-112340.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.110724-112340.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.110724-112340.gi%7C284089709%7Cgb%7CEFC43365%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094401%7Cgb%7CEFC48035%2E1%7C.for.113245-114583.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.113245-114583.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.113245-114583.gi%7C284094401%7Cgb%7CEFC48035%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.115441-116531.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115441-116531.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115441-116531.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.for.115501-116582.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115501-116582.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115501-116582.gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.for.115498-116531.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115498-116531.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115498-116531.gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.for.115498-116531.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115498-116531.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115498-116531.gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.for.115444-116525.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115444-116525.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115444-116525.gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.for.115492-116870.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115492-116870.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115492-116870.gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.for.115504-116570.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115504-116570.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115504-116570.gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.for.115438-116525.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115438-116525.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115438-116525.gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.for.115480-116636.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115480-116636.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115480-116636.gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.for.115441-116543.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115441-116543.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115441-116543.gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.for.115522-116534.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115522-116534.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115522-116534.gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089974%7Cgb%7CEFC43628%2E1%7C.for.118498-119501.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.118498-119501.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.118498-119501.gi%7C284089974%7Cgb%7CEFC43628%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091629%7Cgb%7CEFC45275%2E1%7C.for.127450-128726.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.127450-128726.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.127450-128726.gi%7C284091629%7Cgb%7CEFC45275%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.13913-15501.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.13913-15501.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.13913-15501.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.17798-19299.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.17798-19299.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.17798-19299.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.26570-28870.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.26570-28870.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.26570-28870.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.31607-32320.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.31607-32320.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.31607-32320.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.36769-37656.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.36769-37656.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.36769-37656.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.37756-39930.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.37756-39930.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.37756-39930.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.40211-41156.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.40211-41156.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.40211-41156.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.45455-48162.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.45455-48162.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.45455-48162.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.63284-64945.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.63284-64945.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.63284-64945.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.68284-69308.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.68284-69308.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.68284-69308.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.73105-74011.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.73105-74011.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.73105-74011.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.75340-76365.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.75340-76365.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.75340-76365.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.110923-112140.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.110923-112140.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.110923-112140.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.112203-114443.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.112203-114443.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.112203-114443.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.118692-119467.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.118692-119467.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.118692-119467.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.121483-122904.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.121483-122904.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.121483-122904.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.125143-126621.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.125143-126621.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.125143-126621.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.135656-137638.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.135656-137638.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.135656-137638.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.2232-3500.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.2232-3500.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.2232-3500.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.9889-11184.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.9889-11184.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.9889-11184.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.15338-16982.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.15338-16982.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.15338-16982.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.17002-18066.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.17002-18066.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.17002-18066.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.20595-24662.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.20595-24662.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.20595-24662.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.28129-29075.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.28129-29075.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.28129-29075.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.29082-30163.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.29082-30163.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.29082-30163.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.30190-32714.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.30190-32714.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.30190-32714.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.35639-36729.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.35639-36729.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.35639-36729.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.40965-44215.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.40965-44215.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.40965-44215.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.48799-51319.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.48799-51319.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.48799-51319.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.52237-56144.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.52237-56144.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.52237-56144.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.59692-61161.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.59692-61161.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.59692-61161.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.61226-62092.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.61226-62092.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.61226-62092.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.66169-67070.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.66169-67070.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.66169-67070.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.80131-82212.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.80131-82212.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.80131-82212.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.82569-86660.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.82569-86660.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.82569-86660.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.86679-91991.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.86679-91991.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.86679-91991.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.102683-104153.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.102683-104153.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.102683-104153.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.109075-111013.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.109075-111013.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.109075-111013.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.115640-116916.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.115640-116916.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.115640-116916.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.117143-118225.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.117143-118225.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.117143-118225.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/40_0.119470-120424.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/40_0.119470-120424.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/40_0.119470-120424.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/41_0.122479-124973.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/41_0.122479-124973.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/41_0.122479-124973.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/42_0.126381-127450.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/42_0.126381-127450.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/42_0.126381-127450.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/43_0.127649-128526.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/43_0.127649-128526.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/43_0.127649-128526.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/44_0.130880-131967.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/44_0.130880-131967.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/44_0.130880-131967.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/45_0.134516-135567.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/45_0.134516-135567.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/45_0.134516-135567.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/46_0.136640-137535.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/46_0.136640-137535.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/46_0.136640-137535.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C34 Length: 50682 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:1 current j:0 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C34.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C34.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:3 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11308%7C---NA---.for.1103-2190.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1103-2190.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1103-2190.Ar_EST_120301b_rep_c11308%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1153%7Cswim.for.26-2179.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.26-2179.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.26-2179.120301b_Contig1153%7Cswim.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19191%7C---NA---.for.1562-3123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1562-3123.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1562-3123.Ar_EST_120301b_c19191%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5150%7C---NA---.for.1214-2476.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1214-2476.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1214-2476.Ar_EST_120301b_rep_c5150%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c231%7Cfamily.for.1007-2594.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1007-2594.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1007-2594.Ar_EST_120301b_c231%7Cfamily.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9632%7Cprotein.for.1527-3329.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1527-3329.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1527-3329.Ar_EST_120301b_rep_c9632%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4785%7Cheat.for.3667-6175.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3667-6175.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3667-6175.Ar_EST_120301b_rep_c4785%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c25%7Cheat.for.3677-6842.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3677-6842.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3677-6842.Ar_EST_120301b_c25%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14633%7Clipophosphoglycan.for.4974-6319.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.4974-6319.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.4974-6319.Ar_EST_120301b_rep_c14633%7Clipophosphoglycan.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10561%7Cphosphatidic.for.6674-8012.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.6674-8012.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.6674-8012.Ar_EST_120301b_c10561%7Cphosphatidic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12466%7Cmaruca_01_m20_smart5-seq1.for.9193-10445.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.9193-10445.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.9193-10445.Ar_EST_120301b_c12466%7Cmaruca_01_m20_smart5-seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig557%7Clyc-8-c11.for.12929-14444.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.12929-14444.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.12929-14444.120301b_Contig557%7Clyc-8-c11.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6187%7Chypothetical.for.12930-14470.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.12930-14470.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.12930-14470.Ar_EST_120301b_rep_c6187%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1369%7Cphospholipase.for.15235-18239.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.15235-18239.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.15235-18239.120301b_Contig1369%7Cphospholipase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16238%7Cactin-related.for.19436-20738.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.19436-20738.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.19436-20738.Ar_EST_120301b_rep_c16238%7Cactin-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6211%7Cactin-related.for.18930-20753.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.18930-20753.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.18930-20753.Ar_EST_120301b_rep_c6211%7Cactin-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig460%7Cactin-related.for.18789-20779.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.18789-20779.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.18789-20779.120301b_Contig460%7Cactin-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9473%7Ccre-arx-3.for.19027-20240.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.19027-20240.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.19027-20240.Ar_EST_120301b_rep_c9473%7Ccre-arx-3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9479%7Cswi2.for.20409-21857.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20409-21857.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20409-21857.Ar_EST_120301b_c9479%7Cswi2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3575%7Cswi.for.21456-23264.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.21456-23264.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.21456-23264.Ar_EST_120301b_c3575%7Cswi.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8684%7Cmeloidogyne.for.23339-24828.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.23339-24828.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.23339-24828.Ar_EST_120301b_c8684%7Cmeloidogyne.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13859%7Cpas.for.24923-26220.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.24923-26220.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.24923-26220.Ar_EST_120301b_c13859%7Cpas.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3752%7Cprotein.for.28758-30821.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.28758-30821.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.28758-30821.Ar_EST_120301b_c3752%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18512%7Catp-dependent.for.29537-30850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.29537-30850.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.29537-30850.Ar_EST_120301b_c18512%7Catp-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c92%7Cproprotein.for.30412-33324.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.30412-33324.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.30412-33324.Ar_EST_120301b_c92%7Cproprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig148%7Cdomain-containing.for.33636-35938.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.33636-35938.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.33636-35938.120301b_Contig148%7Cdomain-containing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1026%7Ccarbohydrate.for.38938-42088.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.38938-42088.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.38938-42088.120301b_Contig1026%7Ccarbohydrate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18266%7Ccbpn%3A.for.42317-43586.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.42317-43586.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.42317-43586.Ar_EST_120301b_c18266%7Ccbpn%3A.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16104%7Coxidoreductase.for.48145-49395.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.48145-49395.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.48145-49395.Ar_EST_120301b_c16104%7Coxidoreductase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18279%7Coxidoreductase.for.48626-49955.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.48626-49955.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.48626-49955.Ar_EST_120301b_c18279%7Coxidoreductase.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:13 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:6 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:13 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:8 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:12 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:9 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:12 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:12 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:8 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:8 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093550%7Cgb%7CEFC47187%2E1%7C.for.2823-4207.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.2823-4207.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.2823-4207.gi%7C284093550%7Cgb%7CEFC47187%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086161%7Cgb%7CEFC39839%2E1%7C.for.3811-6713.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3811-6713.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3811-6713.gi%7C284086161%7Cgb%7CEFC39839%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096519%7Cgb%7CEFC50147%2E1%7C.for.3718-6716.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3718-6716.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3718-6716.gi%7C284096519%7Cgb%7CEFC50147%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096247%7Cgb%7CEFC49875%2E1%7C.for.3811-6683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3811-6683.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3811-6683.gi%7C284096247%7Cgb%7CEFC49875%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C25986841%7Cgb%7CAAM93756%2E1%7C.for.3826-6656.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3826-6656.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3826-6656.gi%7C25986841%7Cgb%7CAAM93756%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091896%7Cgb%7CEFC45540%2E1%7C.for.15058-17428.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.15058-17428.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.15058-17428.gi%7C284091896%7Cgb%7CEFC45540%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086563%7Cgb%7CEFC40239%2E1%7C.for.15070-17413.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.15070-17413.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.15070-17413.gi%7C284086563%7Cgb%7CEFC40239%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083916%7Cgb%7CEFC37614%2E1%7C.for.15061-16741.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.15061-16741.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.15061-16741.gi%7C284083916%7Cgb%7CEFC37614%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083373%7Cgb%7CEFC37077%2E1%7C.for.16725-19001.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.16725-19001.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.16725-19001.gi%7C284083373%7Cgb%7CEFC37077%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082917%7Cgb%7CEFC36627%2E1%7C.for.18929-20742.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.18929-20742.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.18929-20742.gi%7C284082917%7Cgb%7CEFC36627%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096936%7Cgb%7CEFC50563%2E1%7C.for.20691-23059.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20691-23059.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20691-23059.gi%7C284096936%7Cgb%7CEFC50563%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093262%7Cgb%7CEFC46901%2E1%7C.for.20697-23032.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20697-23032.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20697-23032.gi%7C284093262%7Cgb%7CEFC46901%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085362%7Cgb%7CEFC39046%2E1%7C.for.20565-23233.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20565-23233.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20565-23233.gi%7C284085362%7Cgb%7CEFC39046%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093648%7Cgb%7CEFC47285%2E1%7C.for.20688-23206.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20688-23206.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20688-23206.gi%7C284093648%7Cgb%7CEFC47285%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095906%7Cgb%7CEFC49535%2E1%7C.for.20715-23062.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20715-23062.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20715-23062.gi%7C284095906%7Cgb%7CEFC49535%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087958%7Cgb%7CEFC41624%2E1%7C.for.20487-23215.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20487-23215.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20487-23215.gi%7C284087958%7Cgb%7CEFC41624%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096449%7Cgb%7CEFC50077%2E1%7C.for.30726-32926.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.30726-32926.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.30726-32926.gi%7C284096449%7Cgb%7CEFC50077%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089770%7Cgb%7CEFC43425%2E1%7C.for.45290-46981.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.45290-46981.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.45290-46981.gi%7C284089770%7Cgb%7CEFC43425%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093999%7Cgb%7CEFC47635%2E1%7C.for.45308-46900.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.45308-46900.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.45308-46900.gi%7C284093999%7Cgb%7CEFC47635%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084374%7Cgb%7CEFC38067%2E1%7C.for.48179-50148.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.48179-50148.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.48179-50148.gi%7C284084374%7Cgb%7CEFC38067%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:7 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:7 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:6 now processing 0 total clusters:6 now processing 0 total clusters:6 now processing 0 total clusters:6 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:6 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:6 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:9 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.13101-14294.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.13101-14294.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.13101-14294.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.15434-18039.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.15434-18039.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.15434-18039.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.19128-20553.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.19128-20553.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.19128-20553.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.20608-23064.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.20608-23064.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.20608-23064.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.23538-24628.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.23538-24628.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.23538-24628.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.25122-26022.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.25122-26022.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.25122-26022.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.30611-33124.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.30611-33124.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.30611-33124.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.33835-35738.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.33835-35738.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.33835-35738.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.39137-41888.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.39137-41888.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.39137-41888.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.225-2929.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.225-2929.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.225-2929.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.3022-6516.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.3022-6516.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.3022-6516.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.6873-7812.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.6873-7812.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.6873-7812.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.9392-10249.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.9392-10249.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.9392-10249.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.15257-17234.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.15257-17234.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.15257-17234.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.29732-30650.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.29732-30650.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.29732-30650.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.42516-43386.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.42516-43386.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.42516-43386.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.48344-49948.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.48344-49948.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.48344-49948.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C35 Length: 58974 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:4 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:1 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:5 current j:0 j_size:5 current j:1 j_size:5 current j:2 j_size:5 current j:3 j_size:5 current j:4 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C35.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C35.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8607%7Cgtp-binding.for.2-1886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.2-1886.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.2-1886.Ar_EST_120301b_c8607%7Cgtp-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6065%7Csubtilisin-like.for.2365-4444.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.2365-4444.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.2365-4444.Ar_EST_120301b_rep_c6065%7Csubtilisin-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1399%7Cn-ethylmaleimide.for.5160-6458.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.5160-6458.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.5160-6458.Ar_EST_120301b_c1399%7Cn-ethylmaleimide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11943%7Ccytochrome.for.7916-9267.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.7916-9267.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.7916-9267.Ar_EST_120301b_c11943%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9590%7Ccytochrome.for.8478-9742.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.8478-9742.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.8478-9742.Ar_EST_120301b_c9590%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1055%7Cregulator.for.12264-13963.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.12264-13963.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.12264-13963.120301b_Contig1055%7Cregulator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8207%7Ccytochrome.for.14989-17301.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.14989-17301.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.14989-17301.Ar_EST_120301b_c8207%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16878%7Chypothetical.for.18560-19916.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.18560-19916.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.18560-19916.Ar_EST_120301b_c16878%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12427%7Ctelomerase.for.22706-24114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.22706-24114.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.22706-24114.Ar_EST_120301b_c12427%7Ctelomerase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11557%7Cprotein.for.28505-30052.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.28505-30052.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.28505-30052.Ar_EST_120301b_c11557%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16891%7Czinc.for.29355-30729.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.29355-30729.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.29355-30729.Ar_EST_120301b_c16891%7Czinc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14460%7Cspastic.for.33103-34283.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.33103-34283.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.33103-34283.Ar_EST_120301b_c14460%7Cspastic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13834%7Cprotein.for.36324-37549.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.36324-37549.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.36324-37549.Ar_EST_120301b_c13834%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1421%7Ctestis.for.43982-45419.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.43982-45419.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.43982-45419.Ar_EST_120301b_c1421%7Ctestis.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16539%7C---NA---.for.46011-47317.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.46011-47317.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.46011-47317.Ar_EST_120301b_c16539%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11932%7Ce3.for.47499-48777.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.47499-48777.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.47499-48777.Ar_EST_120301b_c11932%7Ce3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12237%7Ctplate.for.52411-53828.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.52411-53828.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.52411-53828.Ar_EST_120301b_c12237%7Ctplate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1748%7Cpredicted.for.54228-55364.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.54228-55364.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.54228-55364.Ar_EST_120301b_c1748%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c112%7Cn-acyl.for.55635-57533.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.55635-57533.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.55635-57533.Ar_EST_120301b_c112%7Cn-acyl.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:52 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:39 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:61 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:47 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:51 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:32 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:44 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:50 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:50 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088120%7Cgb%7CEFC41785%2E1%7C.for.1-1806.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.1-1806.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.1-1806.gi%7C284088120%7Cgb%7CEFC41785%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081631%7Cgb%7CEFC35564%2E1%7C.for.5213-6594.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.5213-6594.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.5213-6594.gi%7C284081631%7Cgb%7CEFC35564%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089466%7Cgb%7CEFC43123%2E1%7C.for.7830-9733.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.7830-9733.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.7830-9733.gi%7C284089466%7Cgb%7CEFC43123%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083307%7Cgb%7CEFC37012%2E1%7C.for.13318-14336.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13318-14336.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13318-14336.gi%7C284083307%7Cgb%7CEFC37012%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090963%7Cgb%7CEFC44612%2E1%7C.for.13747-15125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13747-15125.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13747-15125.gi%7C284090963%7Cgb%7CEFC44612%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.for.14101-15107.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.14101-15107.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.14101-15107.gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081402%7Cgb%7CEFC35430%2E1%7C.for.14110-15161.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.14110-15161.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.14110-15161.gi%7C284081402%7Cgb%7CEFC35430%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096471%7Cgb%7CEFC50099%2E1%7C.for.13768-14993.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13768-14993.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13768-14993.gi%7C284096471%7Cgb%7CEFC50099%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094163%7Cgb%7CEFC47798%2E1%7C.for.13732-15062.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13732-15062.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13732-15062.gi%7C284094163%7Cgb%7CEFC47798%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091693%7Cgb%7CEFC45338%2E1%7C.for.13768-15032.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13768-15032.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13768-15032.gi%7C284091693%7Cgb%7CEFC45338%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095876%7Cgb%7CEFC49505%2E1%7C.for.13825-15098.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13825-15098.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13825-15098.gi%7C284095876%7Cgb%7CEFC49505%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093839%7Cgb%7CEFC47475%2E1%7C.for.14101-15107.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.14101-15107.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.14101-15107.gi%7C284093839%7Cgb%7CEFC47475%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094409%7Cgb%7CEFC48043%2E1%7C.for.15898-17326.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.15898-17326.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.15898-17326.gi%7C284094409%7Cgb%7CEFC48043%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095125%7Cgb%7CEFC48757%2E1%7C.for.15799-17275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.15799-17275.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.15799-17275.gi%7C284095125%7Cgb%7CEFC48757%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080983%7Cgb%7CEFC35253%2E1%7C.for.40888-42371.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42371.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42371.gi%7C284080983%7Cgb%7CEFC35253%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083648%7Cgb%7CEFC37349%2E1%7C.for.40888-42344.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42344.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42344.gi%7C284083648%7Cgb%7CEFC37349%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084263%7Cgb%7CEFC37957%2E1%7C.for.41095-42344.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41095-42344.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41095-42344.gi%7C284084263%7Cgb%7CEFC37957%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096419%7Cgb%7CEFC50047%2E1%7C.for.41068-42347.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41068-42347.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41068-42347.gi%7C284096419%7Cgb%7CEFC50047%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087065%7Cgb%7CEFC40737%2E1%7C.for.41398-42347.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41398-42347.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41398-42347.gi%7C284087065%7Cgb%7CEFC40737%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090976%7Cgb%7CEFC44625%2E1%7C.for.40888-42359.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42359.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42359.gi%7C284090976%7Cgb%7CEFC44625%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081047%7Cgb%7CEFC35275%2E1%7C.for.40888-42131.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42131.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42131.gi%7C284081047%7Cgb%7CEFC35275%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082158%7Cgb%7CEFC35924%2E1%7C.for.40888-42368.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42368.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42368.gi%7C284082158%7Cgb%7CEFC35924%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094671%7Cgb%7CEFC48304%2E1%7C.for.41038-42356.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41038-42356.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41038-42356.gi%7C284094671%7Cgb%7CEFC48304%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086669%7Cgb%7CEFC40344%2E1%7C.for.41263-42338.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41263-42338.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41263-42338.gi%7C284086669%7Cgb%7CEFC40344%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096635%7Cgb%7CEFC50262%2E1%7C.for.43934-46857.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.43934-46857.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.43934-46857.gi%7C284096635%7Cgb%7CEFC50262%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083461%7Cgb%7CEFC37164%2E1%7C.for.55969-57425.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.55969-57425.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.55969-57425.gi%7C284083461%7Cgb%7CEFC37164%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:7 now processing 0 total clusters:7 now processing 0 in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:4 now processing 0 total clusters:4 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:4 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:4 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:2 now processing 0 total clusters:2 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.201-1686.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.201-1686.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.201-1686.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.5359-6394.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.5359-6394.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.5359-6394.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.8029-9542.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.8029-9542.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.8029-9542.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.12463-14925.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.12463-14925.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.12463-14925.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.15188-17126.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.15188-17126.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.15188-17126.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.18743-19716.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.18743-19716.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.18743-19716.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.22905-23923.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.22905-23923.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.22905-23923.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.28704-30529.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.28704-30529.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.28704-30529.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.33302-37349.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.33302-37349.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.33302-37349.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.41087-42171.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.41087-42171.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.41087-42171.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.44133-47117.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.44133-47117.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.44133-47117.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.52610-53628.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.52610-53628.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.52610-53628.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.55834-57333.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.55834-57333.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.55834-57333.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C36 Length: 164851 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:4 current j:0 j_size:4 current j:1 j_size:4 current j:2 j_size:4 current j:3 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C36.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C36.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:8 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:10 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig681%7Cpredicted.for.1612-3428.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.1612-3428.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.1612-3428.120301b_Contig681%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig244%7Cpeptidase.for.1-2453.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.1-2453.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.1-2453.120301b_Contig244%7Cpeptidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10191%7Cprotein.for.7049-8512.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.7049-8512.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.7049-8512.Ar_EST_120301b_c10191%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16233%7Cpre-mrna-processing.for.7813-8914.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.7813-8914.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.7813-8914.Ar_EST_120301b_c16233%7Cpre-mrna-processing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c213%7C14-3-3.for.10760-12363.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.10760-12363.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.10760-12363.Ar_EST_120301b_c213%7C14-3-3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16140%7Culva.for.11130-12229.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.11130-12229.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.11130-12229.Ar_EST_120301b_rep_c16140%7Culva.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5489%7Clipoxygenase.for.8318-9929.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.8318-9929.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.8318-9929.Ar_EST_120301b_rep_c5489%7Clipoxygenase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig419%7Clipoxygenase.for.8371-10887.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.8371-10887.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.8371-10887.120301b_Contig419%7Clipoxygenase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c582%7Cprotein.for.9744-11960.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.9744-11960.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.9744-11960.Ar_EST_120301b_c582%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15523%7Chypothetical.for.12770-14142.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.12770-14142.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.12770-14142.Ar_EST_120301b_c15523%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17561%7Cexported.for.13626-14946.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.13626-14946.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.13626-14946.Ar_EST_120301b_c17561%7Cexported.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3144%7Cexported.for.13714-15185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.13714-15185.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.13714-15185.Ar_EST_120301b_c3144%7Cexported.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4715%7Cpyruvate.for.15987-18058.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.15987-18058.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.15987-18058.Ar_EST_120301b_rep_c4715%7Cpyruvate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8703%7Cadenylate.for.18415-20385.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.18415-20385.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.18415-20385.Ar_EST_120301b_c8703%7Cadenylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14309%7Cpshb008xj07f.for.19602-20811.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.19602-20811.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.19602-20811.Ar_EST_120301b_c14309%7Cpshb008xj07f.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2673%7Chypothetical.for.25046-26505.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.25046-26505.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.25046-26505.Ar_EST_120301b_c2673%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19713%7Cfigitidae.for.25465-26531.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.25465-26531.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.25465-26531.Ar_EST_120301b_c19713%7Cfigitidae.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10941%7Cunnamed.for.25267-26580.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.25267-26580.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.25267-26580.Ar_EST_120301b_c10941%7Cunnamed.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig952%7Calkaline.for.27039-28602.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.27039-28602.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.27039-28602.120301b_Contig952%7Calkaline.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1354%7Cvacuolar.for.29723-31176.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.29723-31176.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.29723-31176.Ar_EST_120301b_c1354%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2160%7Cheat.for.31661-33512.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.31661-33512.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.31661-33512.Ar_EST_120301b_c2160%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig72%7Cheat.for.32921-34988.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.32921-34988.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.32921-34988.120301b_Contig72%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14835%7Cheat.for.33292-34215.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.33292-34215.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.33292-34215.Ar_EST_120301b_c14835%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11328%7Cca00-xx-cs1-019-e03-.for.37444-38809.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.37444-38809.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.37444-38809.Ar_EST_120301b_c11328%7Cca00-xx-cs1-019-e03-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14706%7Capoptosis.for.38105-39109.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.38105-39109.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.38105-39109.Ar_EST_120301b_c14706%7Capoptosis.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13920%7Cnormalized.for.42436-43717.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.42436-43717.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.42436-43717.Ar_EST_120301b_c13920%7Cnormalized.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11389%7C---NA---.for.43257-45228.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.43257-45228.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.43257-45228.Ar_EST_120301b_c11389%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8045%7Chypothetical.for.44921-46139.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.44921-46139.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.44921-46139.Ar_EST_120301b_c8045%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c696%7Cmethyltransferase.for.45942-47448.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.45942-47448.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.45942-47448.Ar_EST_120301b_c696%7Cmethyltransferase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c479%7Cras.for.47229-48708.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.47229-48708.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.47229-48708.Ar_EST_120301b_c479%7Cras.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10880%7Ccagn.for.47999-49358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.47999-49358.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.47999-49358.Ar_EST_120301b_c10880%7Ccagn.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11023%7Cwoods.for.49911-51464.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.49911-51464.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.49911-51464.Ar_EST_120301b_c11023%7Cwoods.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11544%7Cmorn.for.51230-52774.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.51230-52774.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.51230-52774.Ar_EST_120301b_c11544%7Cmorn.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14618%7Cfp661852.for.52446-53539.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.52446-53539.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.52446-53539.Ar_EST_120301b_rep_c14618%7Cfp661852.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6769%7Cfp779243.for.52203-53852.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.52203-53852.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.52203-53852.Ar_EST_120301b_rep_c6769%7Cfp779243.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1926%7Cglyoxylate.for.53381-54954.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.53381-54954.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.53381-54954.Ar_EST_120301b_c1926%7Cglyoxylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19845%7Cmajor.for.55613-58074.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.55613-58074.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.55613-58074.Ar_EST_120301b_c19845%7Cmajor.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6910%7Cwd-40.for.57551-59082.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.57551-59082.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.57551-59082.Ar_EST_120301b_rep_c6910%7Cwd-40.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16202%7Cmkiaa0840.for.60733-62118.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.60733-62118.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.60733-62118.Ar_EST_120301b_c16202%7Cmkiaa0840.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1072%7Czinc.for.61536-63167.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.61536-63167.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.61536-63167.Ar_EST_120301b_c1072%7Czinc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7880%7Cprotein.for.64297-66068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.64297-66068.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.64297-66068.Ar_EST_120301b_c7880%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19724%7Ciris.for.63956-65289.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.63956-65289.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.63956-65289.Ar_EST_120301b_c19724%7Ciris.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18072%7C3-carboxymuconate.for.71894-73072.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.71894-73072.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.71894-73072.Ar_EST_120301b_c18072%7C3-carboxymuconate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18444%7C60s.for.80598-81815.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.80598-81815.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.80598-81815.Ar_EST_120301b_c18444%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig241%7Cpredicted.for.82554-84883.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.82554-84883.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.82554-84883.120301b_Contig241%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17780%7Cssalplnb505110.for.82703-83944.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.82703-83944.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.82703-83944.Ar_EST_120301b_c17780%7Cssalplnb505110.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15355%7C---NA---.for.89954-91419.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.89954-91419.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.89954-91419.Ar_EST_120301b_c15355%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17615%7Cdk939318.for.91151-92547.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.91151-92547.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.91151-92547.Ar_EST_120301b_c17615%7Cdk939318.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1920%7Cloc100125160.for.93005-94506.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.93005-94506.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.93005-94506.Ar_EST_120301b_c1920%7Cloc100125160.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c326%7Cpeptide-n.for.94452-96001.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.94452-96001.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.94452-96001.Ar_EST_120301b_c326%7Cpeptide-n.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1414%7Cpredicted.for.96429-97878.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.96429-97878.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.96429-97878.Ar_EST_120301b_c1414%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16511%7Cprotein.for.100071-101309.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100071-101309.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100071-101309.Ar_EST_120301b_c16511%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17541%7Csec14l1.for.100091-101441.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100091-101441.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100091-101441.Ar_EST_120301b_c17541%7Csec14l1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8021%7Cguanine.for.100862-102783.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100862-102783.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100862-102783.Ar_EST_120301b_c8021%7Cguanine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14826%7Cphenazine.for.112041-113316.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.112041-113316.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.112041-113316.Ar_EST_120301b_c14826%7Cphenazine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8891%7Cmacro.for.112626-114075.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.112626-114075.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.112626-114075.Ar_EST_120301b_c8891%7Cmacro.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9485%7Cer-golgi.for.113492-115258.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.113492-115258.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.113492-115258.Ar_EST_120301b_c9485%7Cer-golgi.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9610%7Cpeptide.for.115387-116807.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.115387-116807.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.115387-116807.Ar_EST_120301b_c9610%7Cpeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8797%7Cpseudouridine.for.116507-118099.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.116507-118099.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.116507-118099.Ar_EST_120301b_c8797%7Cpseudouridine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4203%7Cmitogen-activated.for.117483-119541.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117483-119541.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117483-119541.Ar_EST_120301b_rep_c4203%7Cmitogen-activated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig609%7Cmitogen-activated.for.118248-119740.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118248-119740.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118248-119740.120301b_Contig609%7Cmitogen-activated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20137%7Cchromatin.for.121160-123912.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.121160-123912.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.121160-123912.Ar_EST_120301b_c20137%7Cchromatin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7867%7Cpredicted.for.123600-125572.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.123600-125572.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.123600-125572.Ar_EST_120301b_c7867%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18812%7Cmetal.for.123289-124801.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.123289-124801.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.123289-124801.Ar_EST_120301b_c18812%7Cmetal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2196%7Cchromosome.for.124897-126496.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.124897-126496.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.124897-126496.Ar_EST_120301b_c2196%7Cchromosome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13274%7Cribose-5-phosphate.for.127761-129064.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.127761-129064.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.127761-129064.Ar_EST_120301b_c13274%7Cribose-5-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12734%7Cribose-5-phosphate.for.127554-129000.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.127554-129000.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.127554-129000.Ar_EST_120301b_c12734%7Cribose-5-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c862%7Cgtp-binding.for.129545-130880.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129545-130880.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129545-130880.Ar_EST_120301b_c862%7Cgtp-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12075%7Cras-related.for.129414-130749.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129414-130749.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129414-130749.Ar_EST_120301b_c12075%7Cras-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12517%7Cks20025f06.for.130671-131613.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.130671-131613.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.130671-131613.Ar_EST_120301b_c12517%7Cks20025f06.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15951%7Csplicing.for.130942-132303.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.130942-132303.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.130942-132303.Ar_EST_120301b_c15951%7Csplicing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14460%7Cspastic.for.140331-141326.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.140331-141326.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.140331-141326.Ar_EST_120301b_c14460%7Cspastic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11557%7Cprotein.for.144408-145922.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.144408-145922.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.144408-145922.Ar_EST_120301b_c11557%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16858%7Csensor.for.147185-148571.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.147185-148571.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.147185-148571.Ar_EST_120301b_c16858%7Csensor.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7923%7Cprotein.for.150560-152432.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.150560-152432.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.150560-152432.Ar_EST_120301b_c7923%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2557%7Ccentromere.for.150215-152133.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.150215-152133.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.150215-152133.Ar_EST_120301b_c2557%7Ccentromere.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16845%7Ccglsc1ng-t3-006_k21_17apr2009_085.for.159428-160814.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.159428-160814.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.159428-160814.Ar_EST_120301b_c16845%7Ccglsc1ng-t3-006_k21_17apr2009_085.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2868%7Clongevity.for.162089-164040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.162089-164040.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.162089-164040.Ar_EST_120301b_c2868%7Clongevity.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:41 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:33 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:29 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:53 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:46 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:46 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:58 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:32 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090638%7Cgb%7CEFC44289%2E1%7C.for.2846-5161.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.2846-5161.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.2846-5161.gi%7C284090638%7Cgb%7CEFC44289%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092635%7Cgb%7CEFC46276%2E1%7C.for.6522-8824.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.6522-8824.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.6522-8824.gi%7C284092635%7Cgb%7CEFC46276%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087213%7Cgb%7CEFC40884%2E1%7C.for.15979-17888.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.15979-17888.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.15979-17888.gi%7C284087213%7Cgb%7CEFC40884%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096878%7Cgb%7CEFC50505%2E1%7C.for.17488-18548.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.17488-18548.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.17488-18548.gi%7C284096878%7Cgb%7CEFC50505%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097085%7Cgb%7CEFC50712%2E1%7C.for.23058-25469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.23058-25469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.23058-25469.gi%7C284097085%7Cgb%7CEFC50712%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090588%7Cgb%7CEFC44239%2E1%7C.for.31826-34626.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.31826-34626.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.31826-34626.gi%7C284090588%7Cgb%7CEFC44239%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091692%7Cgb%7CEFC45337%2E1%7C.for.31688-35097.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.31688-35097.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.31688-35097.gi%7C284091692%7Cgb%7CEFC45337%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096964%7Cgb%7CEFC50591%2E1%7C.for.47338-48695.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.47338-48695.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.47338-48695.gi%7C284096964%7Cgb%7CEFC50591%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092317%7Cgb%7CEFC45959%2E1%7C.for.47227-48713.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.47227-48713.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.47227-48713.gi%7C284092317%7Cgb%7CEFC45959%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094675%7Cgb%7CEFC48308%2E1%7C.for.51188-52570.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.51188-52570.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.51188-52570.gi%7C284094675%7Cgb%7CEFC48308%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094767%7Cgb%7CEFC48400%2E1%7C.for.53430-54985.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.53430-54985.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.53430-54985.gi%7C284094767%7Cgb%7CEFC48400%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090385%7Cgb%7CEFC44037%2E1%7C.for.55683-57985.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.55683-57985.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.55683-57985.gi%7C284090385%7Cgb%7CEFC44037%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087326%7Cgb%7CEFC40996%2E1%7C.for.55683-58012.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.55683-58012.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.55683-58012.gi%7C284087326%7Cgb%7CEFC40996%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089393%7Cgb%7CEFC43051%2E1%7C.for.58456-60867.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.58456-60867.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.58456-60867.gi%7C284089393%7Cgb%7CEFC43051%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092889%7Cgb%7CEFC46529%2E1%7C.for.58606-60831.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.58606-60831.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.58606-60831.gi%7C284092889%7Cgb%7CEFC46529%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093346%7Cgb%7CEFC46984%2E1%7C.for.93791-96386.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.93791-96386.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.93791-96386.gi%7C284093346%7Cgb%7CEFC46984%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091412%7Cgb%7CEFC45059%2E1%7C.for.98827-100405.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.98827-100405.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.98827-100405.gi%7C284091412%7Cgb%7CEFC45059%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092652%7Cgb%7CEFC46293%2E1%7C.for.100758-102737.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100758-102737.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100758-102737.gi%7C284092652%7Cgb%7CEFC46293%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084774%7Cgb%7CEFC38463%2E1%7C.for.101315-102716.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.101315-102716.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.101315-102716.gi%7C284084774%7Cgb%7CEFC38463%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084712%7Cgb%7CEFC38402%2E1%7C.for.100785-102737.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100785-102737.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100785-102737.gi%7C284084712%7Cgb%7CEFC38402%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083518%7Cgb%7CEFC37220%2E1%7C.for.100776-102716.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100776-102716.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100776-102716.gi%7C284083518%7Cgb%7CEFC37220%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090770%7Cgb%7CEFC44420%2E1%7C.for.100977-102713.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100977-102713.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100977-102713.gi%7C284090770%7Cgb%7CEFC44420%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095980%7Cgb%7CEFC49609%2E1%7C.for.100770-102716.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100770-102716.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100770-102716.gi%7C284095980%7Cgb%7CEFC49609%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091782%7Cgb%7CEFC45427%2E1%7C.for.100941-101983.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100941-101983.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100941-101983.gi%7C284091782%7Cgb%7CEFC45427%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085503%7Cgb%7CEFC39186%2E1%7C.for.100785-102746.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100785-102746.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100785-102746.gi%7C284085503%7Cgb%7CEFC39186%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093388%7Cgb%7CEFC47026%2E1%7C.for.100995-101983.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100995-101983.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100995-101983.gi%7C284093388%7Cgb%7CEFC47026%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095344%7Cgb%7CEFC48975%2E1%7C.for.100782-102776.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100782-102776.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100782-102776.gi%7C284095344%7Cgb%7CEFC48975%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095754%7Cgb%7CEFC49384%2E1%7C.for.100851-102731.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100851-102731.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100851-102731.gi%7C284095754%7Cgb%7CEFC49384%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084944%7Cgb%7CEFC38632%2E1%7C.for.111621-113308.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.111621-113308.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.111621-113308.gi%7C284084944%7Cgb%7CEFC38632%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080802%7Cgb%7CEFC35193%2E1%7C.for.112682-114013.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.112682-114013.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.112682-114013.gi%7C284080802%7Cgb%7CEFC35193%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094932%7Cgb%7CEFC48564%2E1%7C.for.112845-113989.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.112845-113989.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.112845-113989.gi%7C284094932%7Cgb%7CEFC48564%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087397%7Cgb%7CEFC41067%2E1%7C.for.115312-117053.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.115312-117053.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.115312-117053.gi%7C284087397%7Cgb%7CEFC41067%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096928%7Cgb%7CEFC50555%2E1%7C.for.116338-118126.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.116338-118126.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.116338-118126.gi%7C284096928%7Cgb%7CEFC50555%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082445%7Cgb%7CEFC36163%2E1%7C.for.118317-119683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118317-119683.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118317-119683.gi%7C284082445%7Cgb%7CEFC36163%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091587%7Cgb%7CEFC45233%2E1%7C.for.118145-119079.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118145-119079.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118145-119079.gi%7C284091587%7Cgb%7CEFC45233%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097165%7Cgb%7CEFC50792%2E1%7C.for.117849-119659.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117849-119659.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117849-119659.gi%7C284097165%7Cgb%7CEFC50792%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081068%7Cgb%7CEFC35282%2E1%7C.for.117846-119242.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117846-119242.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117846-119242.gi%7C284081068%7Cgb%7CEFC35282%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094136%7Cgb%7CEFC47771%2E1%7C.for.117685-119707.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117685-119707.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117685-119707.gi%7C284094136%7Cgb%7CEFC47771%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090349%7Cgb%7CEFC44001%2E1%7C.for.117739-119683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117739-119683.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117739-119683.gi%7C284090349%7Cgb%7CEFC44001%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082443%7Cgb%7CEFC36161%2E1%7C.for.117712-119016.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117712-119016.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117712-119016.gi%7C284082443%7Cgb%7CEFC36161%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085688%7Cgb%7CEFC39370%2E1%7C.for.117739-119659.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117739-119659.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117739-119659.gi%7C284085688%7Cgb%7CEFC39370%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090237%7Cgb%7CEFC43890%2E1%7C.for.117858-119587.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117858-119587.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117858-119587.gi%7C284090237%7Cgb%7CEFC43890%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096572%7Cgb%7CEFC50200%2E1%7C.for.118121-119272.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118121-119272.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118121-119272.gi%7C284096572%7Cgb%7CEFC50200%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088224%7Cgb%7CEFC41889%2E1%7C.for.118154-119554.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118154-119554.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118154-119554.gi%7C284088224%7Cgb%7CEFC41889%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090447%7Cgb%7CEFC44099%2E1%7C.for.118118-119551.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118118-119551.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118118-119551.gi%7C284090447%7Cgb%7CEFC44099%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083991%7Cgb%7CEFC37688%2E1%7C.for.117849-119671.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117849-119671.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117849-119671.gi%7C284083991%7Cgb%7CEFC37688%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089853%7Cgb%7CEFC43508%2E1%7C.for.118106-119551.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118106-119551.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118106-119551.gi%7C284089853%7Cgb%7CEFC43508%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088374%7Cgb%7CEFC42038%2E1%7C.for.118139-119554.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118139-119554.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118139-119554.gi%7C284088374%7Cgb%7CEFC42038%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086220%7Cgb%7CEFC39898%2E1%7C.for.118022-119575.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118022-119575.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118022-119575.gi%7C284086220%7Cgb%7CEFC39898%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086311%7Cgb%7CEFC39988%2E1%7C.for.118371-119557.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118371-119557.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118371-119557.gi%7C284086311%7Cgb%7CEFC39988%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084616%7Cgb%7CEFC38307%2E1%7C.for.117852-119542.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117852-119542.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117852-119542.gi%7C284084616%7Cgb%7CEFC38307%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087921%7Cgb%7CEFC41587%2E1%7C.for.118590-119671.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118590-119671.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118590-119671.gi%7C284087921%7Cgb%7CEFC41587%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089145%7Cgb%7CEFC42804%2E1%7C.for.117846-119668.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117846-119668.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117846-119668.gi%7C284089145%7Cgb%7CEFC42804%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090070%7Cgb%7CEFC43724%2E1%7C.for.118157-119560.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118157-119560.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118157-119560.gi%7C284090070%7Cgb%7CEFC43724%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093567%7Cgb%7CEFC47204%2E1%7C.for.118106-119281.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118106-119281.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118106-119281.gi%7C284093567%7Cgb%7CEFC47204%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097055%7Cgb%7CEFC50682%2E1%7C.for.119366-121330.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.119366-121330.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.119366-121330.gi%7C284097055%7Cgb%7CEFC50682%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088135%7Cgb%7CEFC41800%2E1%7C.for.127290-128284.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.127290-128284.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.127290-128284.gi%7C284088135%7Cgb%7CEFC41800%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092330%7Cgb%7CEFC45972%2E1%7C.for.129550-130820.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129550-130820.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129550-130820.gi%7C284092330%7Cgb%7CEFC45972%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085175%7Cgb%7CEFC38861%2E1%7C.for.129559-130835.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129559-130835.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129559-130835.gi%7C284085175%7Cgb%7CEFC38861%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087489%7Cgb%7CEFC41158%2E1%7C.for.129436-130832.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129436-130832.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129436-130832.gi%7C284087489%7Cgb%7CEFC41158%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086692%7Cgb%7CEFC40367%2E1%7C.for.129559-130835.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129559-130835.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129559-130835.gi%7C284086692%7Cgb%7CEFC40367%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093218%7Cgb%7CEFC46857%2E1%7C.for.129559-130811.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129559-130811.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129559-130811.gi%7C284093218%7Cgb%7CEFC46857%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095576%7Cgb%7CEFC49206%2E1%7C.for.129424-130829.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129424-130829.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129424-130829.gi%7C284095576%7Cgb%7CEFC49206%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080992%7Cgb%7CEFC35256%2E1%7C.for.129547-130676.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129547-130676.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129547-130676.gi%7C284080992%7Cgb%7CEFC35256%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089507%7Cgb%7CEFC43164%2E1%7C.for.129559-130829.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129559-130829.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129559-130829.gi%7C284089507%7Cgb%7CEFC43164%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092994%7Cgb%7CEFC46634%2E1%7C.for.129670-130817.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129670-130817.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129670-130817.gi%7C284092994%7Cgb%7CEFC46634%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093669%7Cgb%7CEFC47306%2E1%7C.for.130259-132474.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.130259-132474.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.130259-132474.gi%7C284093669%7Cgb%7CEFC47306%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090027%7Cgb%7CEFC43681%2E1%7C.for.132434-133461.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.132434-133461.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.132434-133461.gi%7C284090027%7Cgb%7CEFC43681%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089533%7Cgb%7CEFC43190%2E1%7C.for.150502-152561.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.150502-152561.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.150502-152561.gi%7C284089533%7Cgb%7CEFC43190%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088991%7Cgb%7CEFC42651%2E1%7C.for.153131-154812.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.153131-154812.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.153131-154812.gi%7C284088991%7Cgb%7CEFC42651%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087025%7Cgb%7CEFC40697%2E1%7C.for.153125-154812.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.153125-154812.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.153125-154812.gi%7C284087025%7Cgb%7CEFC40697%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096724%7Cgb%7CEFC50351%2E1%7C.for.157597-158705.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.157597-158705.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.157597-158705.gi%7C284096724%7Cgb%7CEFC50351%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 10 ...processing 1 of 10 ...processing 2 of 10 ...processing 3 of 10 ...processing 4 of 10 ...processing 5 of 10 ...processing 6 of 10 ...processing 7 of 10 ...processing 8 of 10 ...processing 9 of 10 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:17 now processing 0 total clusters:17 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 ...processing 0 of 10 ...processing 1 of 10 ...processing 2 of 10 ...processing 3 of 10 ...processing 4 of 10 ...processing 5 of 10 ...processing 6 of 10 ...processing 7 of 10 ...processing 8 of 10 ...processing 9 of 10 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.0-3228.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.0-3228.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.0-3228.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.12969-14985.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.12969-14985.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.12969-14985.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.23257-26383.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.23257-26383.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.23257-26383.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.50110-51272.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.50110-51272.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.50110-51272.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.51429-54785.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.51429-54785.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.51429-54785.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.57750-60667.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.57750-60667.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.57750-60667.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.60932-62967.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.60932-62967.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.60932-62967.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.82753-84683.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.82753-84683.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.82753-84683.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.90153-92347.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.90153-92347.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.90153-92347.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.100270-101241.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.100270-101241.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.100270-101241.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.115511-119540.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.115511-119540.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.115511-119540.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.119565-121130.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.119565-121130.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.119565-121130.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.121359-126296.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.121359-126296.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.121359-126296.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.127489-128084.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.127489-128084.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.127489-128084.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.153119-154724.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.153119-154724.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.153119-154724.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.3045-4961.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.3045-4961.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.3045-4961.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.6721-10687.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.6721-10687.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.6721-10687.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.16178-18351.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.16178-18351.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.16178-18351.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.18609-20623.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.18609-20623.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.18609-20623.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.27238-28402.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.27238-28402.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.27238-28402.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.31855-34897.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.31855-34897.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.31855-34897.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.37643-39024.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.37643-39024.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.37643-39024.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.42626-43522.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.42626-43522.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.42626-43522.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.46141-47248.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.46141-47248.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.46141-47248.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.47426-49166.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.47426-49166.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.47426-49166.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.55882-57812.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.55882-57812.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.55882-57812.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.64155-65868.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.64155-65868.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.64155-65868.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.72064-72872.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.72064-72872.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.72064-72872.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.80797-81615.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.80797-81615.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.80797-81615.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.93204-96186.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.93204-96186.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.93204-96186.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.96628-97678.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.96628-97678.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.96628-97678.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.99026-100205.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.99026-100205.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.99026-100205.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.100957-102583.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.100957-102583.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.100957-102583.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.111820-115058.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.111820-115058.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.111820-115058.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.127753-128864.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.127753-128864.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.127753-128864.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.129613-132274.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.129613-132274.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.129613-132274.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.140372-141147.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.140372-141147.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.140372-141147.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.144590-145738.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.144590-145738.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.144590-145738.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.147384-148390.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.147384-148390.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.147384-148390.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.150414-152436.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.150414-152436.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.150414-152436.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/40_0.157796-158505.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/40_0.157796-158505.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/40_0.157796-158505.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/41_0.159627-160614.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/41_0.159627-160614.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/41_0.159627-160614.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/42_0.162288-163840.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/42_0.162288-163840.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/42_0.162288-163840.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C37 Length: 131203 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:4 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:4 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:4 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:7 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:3 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:5 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:6 current j:0 j_size:6 current j:1 j_size:6 current j:2 j_size:6 current j:3 j_size:6 current j:4 j_size:6 current j:5 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C37.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C37.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12507%7Ccs00-c2-003-048-e05-.for.491-1869.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.491-1869.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.491-1869.Ar_EST_120301b_c12507%7Ccs00-c2-003-048-e05-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14016%7C000601kaaa001072ht.for.4721-5746.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.4721-5746.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.4721-5746.Ar_EST_120301b_rep_c14016%7C000601kaaa001072ht.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6435%7C000601kaaa001072ht.for.4632-5746.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.4632-5746.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.4632-5746.Ar_EST_120301b_rep_c6435%7C000601kaaa001072ht.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4185%7C000601kaaa001072ht.for.4067-5991.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.4067-5991.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.4067-5991.Ar_EST_120301b_rep_c4185%7C000601kaaa001072ht.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16295%7Ccalcineurin.for.5634-7049.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.5634-7049.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.5634-7049.Ar_EST_120301b_c16295%7Ccalcineurin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12858%7Cran-binding.for.7174-8599.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.7174-8599.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.7174-8599.Ar_EST_120301b_c12858%7Cran-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3327%7Cran-binding.for.6907-8456.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.6907-8456.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.6907-8456.Ar_EST_120301b_c3327%7Cran-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1425%7Cprotein.for.8613-11356.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.8613-11356.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.8613-11356.Ar_EST_120301b_c1425%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6272%7Cprotein.for.9901-11336.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.9901-11336.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.9901-11336.Ar_EST_120301b_rep_c6272%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4396%7Cprotein.for.9311-11267.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.9311-11267.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.9311-11267.Ar_EST_120301b_rep_c4396%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14041%7Cvacuolar.for.9928-10981.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.9928-10981.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.9928-10981.Ar_EST_120301b_rep_c14041%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13503%7Cvacuolar.for.9120-10058.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.9120-10058.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.9120-10058.Ar_EST_120301b_rep_c13503%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c404%7Cvacuolar.for.15625-17344.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.15625-17344.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.15625-17344.Ar_EST_120301b_c404%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18351%7C---NA---.for.17275-18537.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.17275-18537.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.17275-18537.Ar_EST_120301b_rep_c18351%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12162%7Cvacuolar.for.18168-19578.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.18168-19578.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.18168-19578.Ar_EST_120301b_c12162%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2368%7Cfp322549.for.19883-21105.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.19883-21105.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.19883-21105.Ar_EST_120301b_c2368%7Cfp322549.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9387%7Cdiphthamide.for.26530-28351.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.26530-28351.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.26530-28351.Ar_EST_120301b_c9387%7Cdiphthamide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2037%7Cui-ff-if0-abs-g-23-0-.for.28217-29702.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.28217-29702.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.28217-29702.Ar_EST_120301b_c2037%7Cui-ff-if0-abs-g-23-0-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17943%7Cdimethyladenosine.for.29578-30676.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.29578-30676.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.29578-30676.Ar_EST_120301b_c17943%7Cdimethyladenosine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13089%7Cbaac-.for.30820-32167.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.30820-32167.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.30820-32167.Ar_EST_120301b_c13089%7Cbaac-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2504%7Crhodanese.for.31745-33327.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.31745-33327.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.31745-33327.Ar_EST_120301b_c2504%7Crhodanese.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1282%7Cextracellular.for.33470-35788.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33470-35788.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33470-35788.120301b_Contig1282%7Cextracellular.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12161%7Cvacuolar.for.38373-40000.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.38373-40000.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.38373-40000.Ar_EST_120301b_c12161%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig790%7Cvacuolar.for.37386-39178.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.37386-39178.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.37386-39178.120301b_Contig790%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1270%7Cvacuolar.for.39529-40776.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.39529-40776.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.39529-40776.Ar_EST_120301b_c1270%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12489%7Cpenicillin.for.40597-42131.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.40597-42131.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.40597-42131.Ar_EST_120301b_c12489%7Cpenicillin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18123%7Cbeta-lactam.for.41777-43536.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.41777-43536.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.41777-43536.Ar_EST_120301b_c18123%7Cbeta-lactam.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9957%7Cnicotinate-nucleotide.for.43386-44881.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.43386-44881.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.43386-44881.Ar_EST_120301b_c9957%7Cnicotinate-nucleotide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8570%7Cprotein.for.44400-46657.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.44400-46657.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.44400-46657.Ar_EST_120301b_c8570%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17383%7Cdis3-like.for.46455-47626.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.46455-47626.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.46455-47626.Ar_EST_120301b_c17383%7Cdis3-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9772%7Cribonuclease.for.47164-48608.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.47164-48608.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.47164-48608.Ar_EST_120301b_c9772%7Cribonuclease.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c911%7Cww.for.49424-50682.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.49424-50682.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.49424-50682.Ar_EST_120301b_c911%7Cww.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17350%7Cpre-mrna-processing.for.49950-51324.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.49950-51324.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.49950-51324.Ar_EST_120301b_c17350%7Cpre-mrna-processing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3739%7Cmagnesium.for.50593-52588.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.50593-52588.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.50593-52588.Ar_EST_120301b_c3739%7Cmagnesium.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13962%7Chypothetical.for.52735-53994.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.52735-53994.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.52735-53994.Ar_EST_120301b_c13962%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c754%7Cixodes.for.53555-55026.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.53555-55026.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.53555-55026.Ar_EST_120301b_c754%7Cixodes.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12519%7C---NA---.for.53383-54729.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.53383-54729.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.53383-54729.Ar_EST_120301b_c12519%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9860%7Cmitochondrial.for.54379-56046.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.54379-56046.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.54379-56046.Ar_EST_120301b_c9860%7Cmitochondrial.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10748%7Cprotein.for.55764-57467.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.55764-57467.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.55764-57467.Ar_EST_120301b_c10748%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1156%7Cring.for.57207-58362.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.57207-58362.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.57207-58362.120301b_Contig1156%7Cring.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3551%7Cinosine.for.58094-59535.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.58094-59535.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.58094-59535.Ar_EST_120301b_c3551%7Cinosine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13720%7Caig2.for.59895-61233.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.59895-61233.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.59895-61233.Ar_EST_120301b_c13720%7Caig2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3065%7Caig2.for.59386-60746.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.59386-60746.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.59386-60746.Ar_EST_120301b_c3065%7Caig2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13535%7Cagencourt_85392014.for.59437-60831.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.59437-60831.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.59437-60831.Ar_EST_120301b_c13535%7Cagencourt_85392014.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6824%7C26s.for.61052-62221.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.61052-62221.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.61052-62221.Ar_EST_120301b_rep_c6824%7C26s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13614%7Cglucose-6-phosphate.for.63769-64983.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.63769-64983.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.63769-64983.Ar_EST_120301b_rep_c13614%7Cglucose-6-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17330%7Cglucose-6-phosphate.for.63507-64746.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.63507-64746.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.63507-64746.Ar_EST_120301b_c17330%7Cglucose-6-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1053%7Cglucose-6-phosphate.for.62782-64983.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.62782-64983.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.62782-64983.120301b_Contig1053%7Cglucose-6-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14588%7Cglucose-6-phosphate.for.63555-64786.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.63555-64786.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.63555-64786.Ar_EST_120301b_rep_c14588%7Cglucose-6-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig737%7Catp-dependent.for.64484-66186.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.64484-66186.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.64484-66186.120301b_Contig737%7Catp-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15766%7Cuf439.for.68551-69854.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.68551-69854.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.68551-69854.Ar_EST_120301b_c15766%7Cuf439.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12200%7C---NA---.for.70153-71070.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.70153-71070.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.70153-71070.Ar_EST_120301b_rep_c12200%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5884%7Cperoxisome.for.69596-71063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.69596-71063.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.69596-71063.Ar_EST_120301b_rep_c5884%7Cperoxisome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16068%7Cbrainf100763c7.for.70334-71744.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.70334-71744.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.70334-71744.Ar_EST_120301b_c16068%7Cbrainf100763c7.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8312%7C6-phosphogluconolactonase.for.71635-73107.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.71635-73107.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.71635-73107.Ar_EST_120301b_c8312%7C6-phosphogluconolactonase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19105%7C6-phosphogluconolactonase.for.71404-72896.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.71404-72896.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.71404-72896.Ar_EST_120301b_c19105%7C6-phosphogluconolactonase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9286%7Cdual.for.72557-73881.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.72557-73881.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.72557-73881.Ar_EST_120301b_c9286%7Cdual.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1071%7C5.for.73667-75687.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.73667-75687.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.73667-75687.120301b_Contig1071%7C5.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10743%7Cbtb.for.77101-78400.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.77101-78400.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.77101-78400.Ar_EST_120301b_c10743%7Cbtb.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11327%7Cprotein.for.77757-79514.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.77757-79514.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.77757-79514.Ar_EST_120301b_c11327%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15586%7Cphaseolus.for.80442-81906.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.80442-81906.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.80442-81906.Ar_EST_120301b_c15586%7Cphaseolus.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11139%7Csymbiotic.for.83479-84775.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.83479-84775.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.83479-84775.Ar_EST_120301b_c11139%7Csymbiotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig892%7Cregulator.for.87573-89936.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.87573-89936.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.87573-89936.120301b_Contig892%7Cregulator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1263%7C-dimethylguanosine.for.89157-90558.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.89157-90558.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.89157-90558.Ar_EST_120301b_c1263%7C-dimethylguanosine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2059%7Cn.for.89882-91416.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.89882-91416.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.89882-91416.Ar_EST_120301b_c2059%7Cn.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11524%7Clikely.for.90627-91691.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.90627-91691.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.90627-91691.Ar_EST_120301b_c11524%7Clikely.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16790%7Cchp.for.93546-94847.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.93546-94847.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.93546-94847.Ar_EST_120301b_c16790%7Cchp.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18329%7C---NA---.for.94213-95227.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.94213-95227.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.94213-95227.Ar_EST_120301b_rep_c18329%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20520%7Cwd-repeat.for.95947-98462.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.95947-98462.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.95947-98462.Ar_EST_120301b_c20520%7Cwd-repeat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c880%7C---NA---.for.98021-99356.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.98021-99356.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.98021-99356.Ar_EST_120301b_c880%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c173%7Cprotein.for.98627-100080.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.98627-100080.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.98627-100080.Ar_EST_120301b_c173%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19251%7Ceb3rody01bclmk.for.99458-100778.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.99458-100778.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.99458-100778.Ar_EST_120301b_c19251%7Ceb3rody01bclmk.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig723%7Cprotein.for.100478-102532.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.100478-102532.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.100478-102532.120301b_Contig723%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2239%7Cprotein.for.101740-103409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.101740-103409.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.101740-103409.Ar_EST_120301b_c2239%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1305%7Cpredicted.for.103067-104669.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.103067-104669.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.103067-104669.120301b_Contig1305%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig198%7Cphospholipid-binding.for.103629-105872.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.103629-105872.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.103629-105872.120301b_Contig198%7Cphospholipid-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7974%7Cacetyl-.for.108069-109618.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.108069-109618.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.108069-109618.Ar_EST_120301b_c7974%7Cacetyl-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16015%7Ccg17746-.for.109104-110368.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.109104-110368.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.109104-110368.Ar_EST_120301b_rep_c16015%7Ccg17746-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4490%7Cprotein.for.108968-110877.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.108968-110877.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.108968-110877.Ar_EST_120301b_rep_c4490%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4669%7Cprotein.for.108973-110818.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.108973-110818.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.108973-110818.Ar_EST_120301b_rep_c4669%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13688%7Cpredicted.for.109133-110247.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.109133-110247.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.109133-110247.Ar_EST_120301b_rep_c13688%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20276%7Cprotein.for.110214-111786.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.110214-111786.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.110214-111786.Ar_EST_120301b_c20276%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1941%7Catpase.for.111493-112784.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.111493-112784.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.111493-112784.Ar_EST_120301b_c1941%7Catpase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2591%7Cprotein.for.113440-115358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.113440-115358.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.113440-115358.Ar_EST_120301b_c2591%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7163%7Ceukaryotic.for.117437-119179.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117437-119179.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117437-119179.Ar_EST_120301b_rep_c7163%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4765%7Cded1p.for.117970-119554.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117970-119554.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117970-119554.Ar_EST_120301b_rep_c4765%7Cded1p.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19714%7Ceukaryotic.for.117455-118809.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117455-118809.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117455-118809.Ar_EST_120301b_rep_c19714%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10202%7Ceukaryotic.for.117728-119153.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117728-119153.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117728-119153.Ar_EST_120301b_rep_c10202%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11350%7Cmitogen-activated.for.123622-124964.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.123622-124964.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.123622-124964.Ar_EST_120301b_c11350%7Cmitogen-activated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2610%7Caromatic.for.124921-126417.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.124921-126417.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.124921-126417.Ar_EST_120301b_c2610%7Caromatic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11315%7Camino.for.125849-127108.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.125849-127108.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.125849-127108.Ar_EST_120301b_c11315%7Camino.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10428%7Creverse.for.128141-129655.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.128141-129655.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.128141-129655.Ar_EST_120301b_c10428%7Creverse.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8273%7Ctpa_exp%3A.for.126388-131134.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.126388-131134.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.126388-131134.Ar_EST_120301b_c8273%7Ctpa_exp%3A.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:62 now processing 0 total clusters:62 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:62 now processing 0 total clusters:62 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:62 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:62 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:62 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:62 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:52 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:41 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:40 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:48 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:50 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:56 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:41 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:42 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:43 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:33 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084733%7Cgb%7CEFC38422%2E1%7C.for.5543-7040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.5543-7040.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.5543-7040.gi%7C284084733%7Cgb%7CEFC38422%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085167%7Cgb%7CEFC38853%2E1%7C.for.8727-11341.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.8727-11341.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.8727-11341.gi%7C284085167%7Cgb%7CEFC38853%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096132%7Cgb%7CEFC49761%2E1%7C.for.26597-28720.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.26597-28720.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.26597-28720.gi%7C284096132%7Cgb%7CEFC49761%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083629%7Cgb%7CEFC37330%2E1%7C.for.28923-30631.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.28923-30631.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.28923-30631.gi%7C284083629%7Cgb%7CEFC37330%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082445%7Cgb%7CEFC36163%2E1%7C.for.34189-35447.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34189-35447.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34189-35447.gi%7C284082445%7Cgb%7CEFC36163%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087192%7Cgb%7CEFC40863%2E1%7C.for.33683-35435.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33683-35435.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33683-35435.gi%7C284087192%7Cgb%7CEFC40863%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097165%7Cgb%7CEFC50792%2E1%7C.for.33656-35504.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33656-35504.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33656-35504.gi%7C284097165%7Cgb%7CEFC50792%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089173%7Cgb%7CEFC42832%2E1%7C.for.33683-35435.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33683-35435.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33683-35435.gi%7C284089173%7Cgb%7CEFC42832%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081068%7Cgb%7CEFC35282%2E1%7C.for.33665-35102.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33665-35102.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33665-35102.gi%7C284081068%7Cgb%7CEFC35282%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.for.34123-35147.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34123-35147.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34123-35147.gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092309%7Cgb%7CEFC45952%2E1%7C.for.34099-35018.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34099-35018.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34099-35018.gi%7C284092309%7Cgb%7CEFC45952%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094136%7Cgb%7CEFC47771%2E1%7C.for.33572-35501.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33572-35501.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33572-35501.gi%7C284094136%7Cgb%7CEFC47771%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090349%7Cgb%7CEFC44001%2E1%7C.for.33662-35564.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33662-35564.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33662-35564.gi%7C284090349%7Cgb%7CEFC44001%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082443%7Cgb%7CEFC36161%2E1%7C.for.33668-34943.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33668-34943.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33668-34943.gi%7C284082443%7Cgb%7CEFC36161%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085688%7Cgb%7CEFC39370%2E1%7C.for.33617-35537.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33617-35537.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33617-35537.gi%7C284085688%7Cgb%7CEFC39370%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092790%7Cgb%7CEFC46430%2E1%7C.for.33680-35447.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33680-35447.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33680-35447.gi%7C284092790%7Cgb%7CEFC46430%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081402%7Cgb%7CEFC35430%2E1%7C.for.34147-35168.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34147-35168.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34147-35168.gi%7C284081402%7Cgb%7CEFC35430%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083991%7Cgb%7CEFC37688%2E1%7C.for.33563-35435.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33563-35435.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33563-35435.gi%7C284083991%7Cgb%7CEFC37688%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089853%7Cgb%7CEFC43508%2E1%7C.for.33907-35474.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33907-35474.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33907-35474.gi%7C284089853%7Cgb%7CEFC43508%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086220%7Cgb%7CEFC39898%2E1%7C.for.33895-35555.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33895-35555.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33895-35555.gi%7C284086220%7Cgb%7CEFC39898%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089128%7Cgb%7CEFC42787%2E1%7C.for.33871-35477.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33871-35477.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33871-35477.gi%7C284089128%7Cgb%7CEFC42787%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087921%7Cgb%7CEFC41587%2E1%7C.for.34528-35552.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34528-35552.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34528-35552.gi%7C284087921%7Cgb%7CEFC41587%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089145%7Cgb%7CEFC42804%2E1%7C.for.33632-35552.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33632-35552.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33632-35552.gi%7C284089145%7Cgb%7CEFC42804%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087906%7Cgb%7CEFC41573%2E1%7C.for.35089-37517.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.35089-37517.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.35089-37517.gi%7C284087906%7Cgb%7CEFC41573%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086843%7Cgb%7CEFC40517%2E1%7C.for.37402-40913.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.37402-40913.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.37402-40913.gi%7C284086843%7Cgb%7CEFC40517%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093100%7Cgb%7CEFC46739%2E1%7C.for.43418-45108.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.43418-45108.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.43418-45108.gi%7C284093100%7Cgb%7CEFC46739%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091410%7Cgb%7CEFC45057%2E1%7C.for.55767-57924.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.55767-57924.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.55767-57924.gi%7C284091410%7Cgb%7CEFC45057%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091249%7Cgb%7CEFC44897%2E1%7C.for.57245-58185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.57245-58185.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.57245-58185.gi%7C284091249%7Cgb%7CEFC44897%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096886%7Cgb%7CEFC50513%2E1%7C.for.58107-59550.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.58107-59550.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.58107-59550.gi%7C284096886%7Cgb%7CEFC50513%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094945%7Cgb%7CEFC48577%2E1%7C.for.62731-65120.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.62731-65120.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.62731-65120.gi%7C284094945%7Cgb%7CEFC48577%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090158%7Cgb%7CEFC43811%2E1%7C.for.64423-65709.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.64423-65709.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.64423-65709.gi%7C284090158%7Cgb%7CEFC43811%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083325%7Cgb%7CEFC37029%2E1%7C.for.72541-73910.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.72541-73910.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.72541-73910.gi%7C284083325%7Cgb%7CEFC37029%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091054%7Cgb%7CEFC44703%2E1%7C.for.77122-78884.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.77122-78884.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.77122-78884.gi%7C284091054%7Cgb%7CEFC44703%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086426%7Cgb%7CEFC40103%2E1%7C.for.89261-91623.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.89261-91623.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.89261-91623.gi%7C284086426%7Cgb%7CEFC40103%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087562%7Cgb%7CEFC41231%2E1%7C.for.91129-92600.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.91129-92600.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.91129-92600.gi%7C284087562%7Cgb%7CEFC41231%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088507%7Cgb%7CEFC42170%2E1%7C.for.96585-98264.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.96585-98264.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.96585-98264.gi%7C284088507%7Cgb%7CEFC42170%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090894%7Cgb%7CEFC44543%2E1%7C.for.98815-100028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.98815-100028.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.98815-100028.gi%7C284090894%7Cgb%7CEFC44543%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094387%7Cgb%7CEFC48021%2E1%7C.for.101777-103319.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.101777-103319.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.101777-103319.gi%7C284094387%7Cgb%7CEFC48021%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087483%7Cgb%7CEFC41152%2E1%7C.for.109338-110853.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.109338-110853.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.109338-110853.gi%7C284087483%7Cgb%7CEFC41152%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085542%7Cgb%7CEFC39225%2E1%7C.for.109010-110669.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.109010-110669.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.109010-110669.gi%7C284085542%7Cgb%7CEFC39225%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091466%7Cgb%7CEFC45112%2E1%7C.for.114033-115033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.114033-115033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.114033-115033.gi%7C284091466%7Cgb%7CEFC45112%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092518%7Cgb%7CEFC46160%2E1%7C.for.113626-115033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.113626-115033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.113626-115033.gi%7C284092518%7Cgb%7CEFC46160%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092387%7Cgb%7CEFC46029%2E1%7C.for.113569-115033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.113569-115033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.113569-115033.gi%7C284092387%7Cgb%7CEFC46029%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091231%7Cgb%7CEFC44879%2E1%7C.for.113626-115033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.113626-115033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.113626-115033.gi%7C284091231%7Cgb%7CEFC44879%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096309%7Cgb%7CEFC49937%2E1%7C.for.114033-115033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.114033-115033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.114033-115033.gi%7C284096309%7Cgb%7CEFC49937%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090160%7Cgb%7CEFC43813%2E1%7C.for.117468-119525.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117468-119525.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117468-119525.gi%7C284090160%7Cgb%7CEFC43813%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090298%7Cgb%7CEFC43950%2E1%7C.for.120511-122054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120511-122054.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120511-122054.gi%7C284090298%7Cgb%7CEFC43950%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081791%7Cgb%7CEFC35658%2E1%7C.for.120520-121706.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120520-121706.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120520-121706.gi%7C284081791%7Cgb%7CEFC35658%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096459%7Cgb%7CEFC50087%2E1%7C.for.120511-122392.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120511-122392.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120511-122392.gi%7C284096459%7Cgb%7CEFC50087%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093690%7Cgb%7CEFC47327%2E1%7C.for.121060-122404.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.121060-122404.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.121060-122404.gi%7C284093690%7Cgb%7CEFC47327%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095073%7Cgb%7CEFC48705%2E1%7C.for.120520-122392.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120520-122392.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120520-122392.gi%7C284095073%7Cgb%7CEFC48705%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083745%7Cgb%7CEFC37445%2E1%7C.for.120511-122051.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120511-122051.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120511-122051.gi%7C284083745%7Cgb%7CEFC37445%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 16 ...processing 1 of 16 ...processing 2 of 16 ...processing 3 of 16 ...processing 4 of 16 ...processing 5 of 16 ...processing 6 of 16 ...processing 7 of 16 ...processing 8 of 16 ...processing 9 of 16 ...processing 10 of 16 ...processing 11 of 16 ...processing 12 of 16 ...processing 13 of 16 ...processing 14 of 16 ...processing 15 of 16 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 ...processing 0 of 14 ...processing 1 of 14 ...processing 2 of 14 ...processing 3 of 14 ...processing 4 of 14 ...processing 5 of 14 ...processing 6 of 14 ...processing 7 of 14 ...processing 8 of 14 ...processing 9 of 14 ...processing 10 of 14 ...processing 11 of 14 ...processing 12 of 14 ...processing 13 of 14 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:30 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:30 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:30 now processing 0 total clusters:30 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.690-1692.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.690-1692.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.690-1692.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.4266-6856.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.4266-6856.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.4266-6856.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.8812-11160.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.8812-11160.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.8812-11160.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.26729-29502.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.26729-29502.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.26729-29502.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.31019-31967.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.31019-31967.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.31019-31967.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.33669-35588.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.33669-35588.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.33669-35588.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.37601-40713.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.37601-40713.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.37601-40713.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.44599-46457.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.44599-46457.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.44599-46457.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.46654-48408.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.46654-48408.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.46654-48408.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.50792-52388.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.50792-52388.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.50792-52388.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.52747-54826.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.52747-54826.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.52747-54826.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.55963-57724.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.55963-57724.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.55963-57724.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.62930-65986.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.62930-65986.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.62930-65986.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.68744-69654.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.68744-69654.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.68744-69654.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.70533-71547.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.70533-71547.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.70533-71547.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.71592-72907.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.71592-72907.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.71592-72907.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.73866-75487.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.73866-75487.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.73866-75487.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.93745-94651.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.93745-94651.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.93745-94651.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.96146-99156.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.96146-99156.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.96146-99156.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.99657-100578.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.99657-100578.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.99657-100578.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.103266-105672.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.103266-105672.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.103266-105672.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.109167-111586.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.109167-111586.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.109167-111586.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.111692-112584.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.111692-112584.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.111692-112584.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.113639-115158.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.113639-115158.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.113639-115158.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.117606-119325.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.117606-119325.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.117606-119325.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.128340-130208.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.128340-130208.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.128340-130208.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.7106-8399.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.7106-8399.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.7106-8399.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.15824-20905.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.15824-20905.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.15824-20905.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.29122-30476.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.29122-30476.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.29122-30476.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.31942-33158.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.31942-33158.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.31942-33158.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.35288-37317.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.35288-37317.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.35288-37317.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.40796-41931.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.40796-41931.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.40796-41931.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.41976-43336.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.41976-43336.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.41976-43336.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.43585-44908.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.43585-44908.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.43585-44908.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.50149-51215.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.50149-51215.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.50149-51215.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.54578-55855.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.54578-55855.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.54578-55855.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.57406-58213.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.57406-58213.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.57406-58213.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.58293-59350.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.58293-59350.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.58293-59350.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.59574-61033.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.59574-61033.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.59574-61033.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.69790-70870.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.69790-70870.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.69790-70870.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/40_0.72740-73710.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/40_0.72740-73710.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/40_0.72740-73710.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/41_0.77300-79314.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/41_0.77300-79314.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/41_0.77300-79314.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/42_0.80641-84575.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/42_0.80641-84575.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/42_0.80641-84575.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/43_0.87772-92400.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/43_0.87772-92400.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/43_0.87772-92400.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/44_0.100677-103209.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/44_0.100677-103209.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/44_0.100677-103209.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/45_0.120710-122204.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/45_0.120710-122204.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/45_0.120710-122204.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/46_0.125120-126908.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/46_0.125120-126908.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/46_0.125120-126908.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C38 Length: 133197 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:10 current j:0 j_size:10 current j:1 j_size:10 current j:2 j_size:10 current j:3 j_size:10 current j:4 j_size:10 current j:5 j_size:10 current j:6 j_size:10 current j:7 j_size:10 current j:8 j_size:10 current j:9 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C38.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C38.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:3 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15228%7Crheb.for.1-1268.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.1-1268.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.1-1268.Ar_EST_120301b_c15228%7Crheb.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16286%7Cmeloidogyne.for.1526-3096.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.1526-3096.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.1526-3096.Ar_EST_120301b_c16286%7Cmeloidogyne.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8400%7Chypothetical.for.826-2788.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.826-2788.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.826-2788.Ar_EST_120301b_c8400%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16746%7Cmc1-0049t-m146-h12-.for.7019-8207.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.7019-8207.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.7019-8207.Ar_EST_120301b_c16746%7Cmc1-0049t-m146-h12-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14558%7Cdedicator.for.7705-8887.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.7705-8887.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.7705-8887.Ar_EST_120301b_c14558%7Cdedicator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15786%7Cfn885936.for.10647-11929.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.10647-11929.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.10647-11929.Ar_EST_120301b_c15786%7Cfn885936.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1214%7Cphosphate.for.12409-14139.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.12409-14139.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.12409-14139.120301b_Contig1214%7Cphosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10859%7Cphosphate.for.13552-14841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.13552-14841.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.13552-14841.Ar_EST_120301b_c10859%7Cphosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16453%7Cpre-mrna.for.14309-15975.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.14309-15975.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.14309-15975.Ar_EST_120301b_c16453%7Cpre-mrna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7753%7Ctranslation.for.16013-17972.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.16013-17972.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.16013-17972.Ar_EST_120301b_c7753%7Ctranslation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14209%7Cpredicted.for.19709-20930.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.19709-20930.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.19709-20930.Ar_EST_120301b_c14209%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18465%7Cpredicted.for.20179-21432.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.20179-21432.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.20179-21432.Ar_EST_120301b_c18465%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12710%7Cixodes.for.20982-22492.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.20982-22492.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.20982-22492.Ar_EST_120301b_c12710%7Cixodes.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16149%7Cactin.for.22395-23718.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.22395-23718.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.22395-23718.Ar_EST_120301b_c16149%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3321%7Cfy454559.for.26643-28278.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.26643-28278.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.26643-28278.Ar_EST_120301b_c3321%7Cfy454559.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1245%7Cregulator.for.28414-30245.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.28414-30245.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.28414-30245.120301b_Contig1245%7Cregulator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8350%7Cglycoside.for.30495-32566.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.30495-32566.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.30495-32566.Ar_EST_120301b_c8350%7Cglycoside.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18494%7Cdiacylglycerol.for.36778-38537.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.36778-38537.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.36778-38537.Ar_EST_120301b_c18494%7Cdiacylglycerol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5917%7Cglycosyl.for.40075-41960.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.40075-41960.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.40075-41960.Ar_EST_120301b_rep_c5917%7Cglycosyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4688%7Cglycosyl.for.39920-41840.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.39920-41840.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.39920-41840.Ar_EST_120301b_rep_c4688%7Cglycosyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8876%7Cprotein.for.42940-44630.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.42940-44630.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.42940-44630.Ar_EST_120301b_c8876%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12607%7Ccarboxypeptidase.for.44948-46147.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.44948-46147.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.44948-46147.Ar_EST_120301b_c12607%7Ccarboxypeptidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15694%7Cfy863259.for.47931-49182.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.47931-49182.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.47931-49182.Ar_EST_120301b_c15694%7Cfy863259.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6729%7Chypothetical.for.48968-50536.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.48968-50536.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.48968-50536.Ar_EST_120301b_rep_c6729%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6105%7Cmusra09tf.for.49359-50604.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.49359-50604.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.49359-50604.Ar_EST_120301b_rep_c6105%7Cmusra09tf.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig360%7Cendonuclease.for.48954-50714.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.48954-50714.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.48954-50714.120301b_Contig360%7Cendonuclease.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1875%7Cregulator.for.50892-52717.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.50892-52717.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.50892-52717.Ar_EST_120301b_c1875%7Cregulator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8971%7Cgpi-anchored.for.52653-54255.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.52653-54255.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.52653-54255.Ar_EST_120301b_c8971%7Cgpi-anchored.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1204%7Cantigenic.for.54431-55800.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.54431-55800.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.54431-55800.120301b_Contig1204%7Cantigenic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2993%7Cala-interacting.for.55690-57429.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.55690-57429.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.55690-57429.Ar_EST_120301b_c2993%7Cala-interacting.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17158%7CCCFBM4D02.for.57563-58850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.57563-58850.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.57563-58850.Ar_EST_120301b_c17158%7CCCFBM4D02.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3003%7Cserine.for.61670-63495.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.61670-63495.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.61670-63495.Ar_EST_120301b_c3003%7Cserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8793%7Ckinase.for.62456-63890.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.62456-63890.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.62456-63890.Ar_EST_120301b_c8793%7Ckinase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c181%7Cmannose-p-dolichol.for.70397-71993.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.70397-71993.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.70397-71993.Ar_EST_120301b_c181%7Cmannose-p-dolichol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17865%7Cmannose-p-dolichol.for.70718-71966.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.70718-71966.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.70718-71966.Ar_EST_120301b_c17865%7Cmannose-p-dolichol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1474%7Cregulator.for.77795-79191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.77795-79191.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.77795-79191.Ar_EST_120301b_c1474%7Cregulator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16328%7Cphytanoyl-.for.80693-82050.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.80693-82050.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.80693-82050.Ar_EST_120301b_c16328%7Cphytanoyl-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14940%7C---NA---.for.93035-94410.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.93035-94410.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.93035-94410.Ar_EST_120301b_c14940%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3508%7Crhogef.for.91581-93280.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.91581-93280.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.91581-93280.Ar_EST_120301b_c3508%7Crhogef.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1078%7Cpleckstrin.for.91910-94036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.91910-94036.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.91910-94036.Ar_EST_120301b_c1078%7Cpleckstrin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12304%7Ccls_c.for.93028-94066.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.93028-94066.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.93028-94066.Ar_EST_120301b_c12304%7Ccls_c.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13759%7Cfoaa-.for.104296-105162.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.104296-105162.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.104296-105162.Ar_EST_120301b_c13759%7Cfoaa-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9555%7Cubiquitin.for.104630-106307.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.104630-106307.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.104630-106307.Ar_EST_120301b_c9555%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19079%7Cubiquitin.for.107333-108411.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.107333-108411.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.107333-108411.Ar_EST_120301b_c19079%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8071%7Cubiquitin.for.106552-108586.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.106552-108586.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.106552-108586.Ar_EST_120301b_c8071%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9823%7CCF0007142.for.116219-117319.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.116219-117319.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.116219-117319.Ar_EST_120301b_c9823%7CCF0007142.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17572%7C---NA---.for.117192-118387.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.117192-118387.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.117192-118387.Ar_EST_120301b_c17572%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20039%7C60s.for.118952-120109.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120109.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120109.Ar_EST_120301b_rep_c20039%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9805%7C0246832.for.119506-120448.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119506-120448.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119506-120448.Ar_EST_120301b_rep_c9805%7C0246832.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11483%7Cisoform.for.119403-120493.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119403-120493.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119403-120493.Ar_EST_120301b_rep_c11483%7Cisoform.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5984%7Cribosomal.for.118952-120346.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120346.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120346.Ar_EST_120301b_rep_c5984%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5385%7Cribosomal.for.118966-120352.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118966-120352.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118966-120352.Ar_EST_120301b_rep_c5385%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20112%7C60s.for.119424-120420.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119424-120420.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119424-120420.Ar_EST_120301b_rep_c20112%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1975%7Cribosomal.for.118868-120525.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118868-120525.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118868-120525.Ar_EST_120301b_c1975%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20290%7Cribosomal.for.118952-120343.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120343.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120343.Ar_EST_120301b_rep_c20290%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20093%7C60s.for.118952-120295.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120295.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120295.Ar_EST_120301b_rep_c20093%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5245%7Cribosomal.for.118952-120380.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120380.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120380.Ar_EST_120301b_rep_c5245%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19529%7Cppe00006243.for.119535-120422.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119535-120422.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119535-120422.Ar_EST_120301b_rep_c19529%7Cppe00006243.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig972%7Ctetratricopeptide.for.119793-121397.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119793-121397.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119793-121397.120301b_Contig972%7Ctetratricopeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15821%7Chypothetical.for.125074-126487.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.125074-126487.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.125074-126487.Ar_EST_120301b_c15821%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7993%7Chypothetical.for.128465-130544.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.128465-130544.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.128465-130544.Ar_EST_120301b_c7993%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6167%7Crho.for.130038-131215.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.130038-131215.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.130038-131215.Ar_EST_120301b_rep_c6167%7Crho.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4353%7Cras-related.for.129829-131313.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.129829-131313.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.129829-131313.Ar_EST_120301b_rep_c4353%7Cras-related.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:41 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 ...processing 0 of 2 ...processing 1 of 2 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:37 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:23 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:36 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:52 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:42 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:32 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:43 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:44 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:26 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095853%7Cgb%7CEFC49482%2E1%7C.for.12016-13166.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.12016-13166.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.12016-13166.gi%7C284095853%7Cgb%7CEFC49482%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087172%7Cgb%7CEFC40843%2E1%7C.for.16022-17814.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.16022-17814.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.16022-17814.gi%7C284087172%7Cgb%7CEFC40843%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095198%7Cgb%7CEFC48829%2E1%7C.for.30355-32672.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.30355-32672.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.30355-32672.gi%7C284095198%7Cgb%7CEFC48829%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096098%7Cgb%7CEFC49727%2E1%7C.for.44261-46268.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.44261-46268.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.44261-46268.gi%7C284096098%7Cgb%7CEFC49727%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094374%7Cgb%7CEFC48008%2E1%7C.for.55695-57505.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.55695-57505.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.55695-57505.gi%7C284094374%7Cgb%7CEFC48008%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082829%7Cgb%7CEFC36540%2E1%7C.for.59265-61230.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.59265-61230.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.59265-61230.gi%7C284082829%7Cgb%7CEFC36540%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095559%7Cgb%7CEFC49189%2E1%7C.for.59268-60843.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.59268-60843.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.59268-60843.gi%7C284095559%7Cgb%7CEFC49189%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096101%7Cgb%7CEFC49730%2E1%7C.for.67324-68455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.67324-68455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.67324-68455.gi%7C284096101%7Cgb%7CEFC49730%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090298%7Cgb%7CEFC43950%2E1%7C.for.69162-70660.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69162-70660.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69162-70660.gi%7C284090298%7Cgb%7CEFC43950%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096572%7Cgb%7CEFC50200%2E1%7C.for.69582-70540.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69582-70540.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69582-70540.gi%7C284096572%7Cgb%7CEFC50200%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084962%7Cgb%7CEFC38649%2E1%7C.for.69174-70630.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69174-70630.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69174-70630.gi%7C284084962%7Cgb%7CEFC38649%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081791%7Cgb%7CEFC35658%2E1%7C.for.69162-70354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69162-70354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69162-70354.gi%7C284081791%7Cgb%7CEFC35658%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096459%7Cgb%7CEFC50087%2E1%7C.for.69168-70963.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69168-70963.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69168-70963.gi%7C284096459%7Cgb%7CEFC50087%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093690%7Cgb%7CEFC47327%2E1%7C.for.69654-70660.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69654-70660.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69654-70660.gi%7C284093690%7Cgb%7CEFC47327%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095073%7Cgb%7CEFC48705%2E1%7C.for.69159-70960.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69159-70960.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69159-70960.gi%7C284095073%7Cgb%7CEFC48705%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083745%7Cgb%7CEFC37445%2E1%7C.for.69168-70654.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69168-70654.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69168-70654.gi%7C284083745%7Cgb%7CEFC37445%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097133%7Cgb%7CEFC50760%2E1%7C.for.70362-71972.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.70362-71972.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.70362-71972.gi%7C284097133%7Cgb%7CEFC50760%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095573%7Cgb%7CEFC49203%2E1%7C.for.75345-76793.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75345-76793.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75345-76793.gi%7C284095573%7Cgb%7CEFC49203%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085812%7Cgb%7CEFC39493%2E1%7C.for.75339-76796.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76796.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76796.gi%7C284085812%7Cgb%7CEFC39493%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092862%7Cgb%7CEFC46502%2E1%7C.for.75402-76799.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75402-76799.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75402-76799.gi%7C284092862%7Cgb%7CEFC46502%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090460%7Cgb%7CEFC44112%2E1%7C.for.75339-76805.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76805.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76805.gi%7C284090460%7Cgb%7CEFC44112%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089636%7Cgb%7CEFC43292%2E1%7C.for.75405-76805.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75405-76805.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75405-76805.gi%7C284089636%7Cgb%7CEFC43292%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090872%7Cgb%7CEFC44522%2E1%7C.for.75342-76799.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75342-76799.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75342-76799.gi%7C284090872%7Cgb%7CEFC44522%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081627%7Cgb%7CEFC35562%2E1%7C.for.75684-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75684-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75684-76808.gi%7C284081627%7Cgb%7CEFC35562%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093011%7Cgb%7CEFC46651%2E1%7C.for.75405-76805.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75405-76805.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75405-76805.gi%7C284093011%7Cgb%7CEFC46651%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091565%7Cgb%7CEFC45211%2E1%7C.for.75429-76796.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75429-76796.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75429-76796.gi%7C284091565%7Cgb%7CEFC45211%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085749%7Cgb%7CEFC39431%2E1%7C.for.75537-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75537-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75537-76808.gi%7C284085749%7Cgb%7CEFC39431%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090598%7Cgb%7CEFC44249%2E1%7C.for.75339-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76808.gi%7C284090598%7Cgb%7CEFC44249%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095689%7Cgb%7CEFC49319%2E1%7C.for.75414-76817.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75414-76817.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75414-76817.gi%7C284095689%7Cgb%7CEFC49319%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088013%7Cgb%7CEFC41679%2E1%7C.for.75339-76799.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76799.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76799.gi%7C284088013%7Cgb%7CEFC41679%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092337%7Cgb%7CEFC45979%2E1%7C.for.75402-76799.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75402-76799.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75402-76799.gi%7C284092337%7Cgb%7CEFC45979%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093381%7Cgb%7CEFC47019%2E1%7C.for.75408-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75408-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75408-76808.gi%7C284093381%7Cgb%7CEFC47019%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087750%7Cgb%7CEFC41418%2E1%7C.for.75339-76796.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76796.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76796.gi%7C284087750%7Cgb%7CEFC41418%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097171%7Cgb%7CEFC50798%2E1%7C.for.75360-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75360-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75360-76808.gi%7C284097171%7Cgb%7CEFC50798%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084253%7Cgb%7CEFC37948%2E1%7C.for.75390-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75390-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75390-76808.gi%7C284084253%7Cgb%7CEFC37948%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096980%7Cgb%7CEFC50607%2E1%7C.for.75396-76726.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75396-76726.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75396-76726.gi%7C284096980%7Cgb%7CEFC50607%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082060%7Cgb%7CEFC35846%2E1%7C.for.75588-76805.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75588-76805.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75588-76805.gi%7C284082060%7Cgb%7CEFC35846%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089921%7Cgb%7CEFC43576%2E1%7C.for.75366-76534.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75366-76534.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75366-76534.gi%7C284089921%7Cgb%7CEFC43576%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087888%7Cgb%7CEFC41555%2E1%7C.for.75339-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76808.gi%7C284087888%7Cgb%7CEFC41555%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090604%7Cgb%7CEFC44255%2E1%7C.for.75381-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75381-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75381-76808.gi%7C284090604%7Cgb%7CEFC44255%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093718%7Cgb%7CEFC47355%2E1%7C.for.75402-76802.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75402-76802.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75402-76802.gi%7C284093718%7Cgb%7CEFC47355%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081289%7Cgb%7CEFC35375%2E1%7C.for.75366-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75366-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75366-76808.gi%7C284081289%7Cgb%7CEFC35375%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084867%7Cgb%7CEFC38555%2E1%7C.for.75381-76805.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75381-76805.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75381-76805.gi%7C284084867%7Cgb%7CEFC38555%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092603%7Cgb%7CEFC46244%2E1%7C.for.75390-76805.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75390-76805.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75390-76805.gi%7C284092603%7Cgb%7CEFC46244%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094751%7Cgb%7CEFC48384%2E1%7C.for.75345-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75345-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75345-76808.gi%7C284094751%7Cgb%7CEFC48384%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.82526-86036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86036.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86036.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.for.83467-86042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83467-86042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83467-86042.gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095844%7Cgb%7CEFC49473%2E1%7C.for.82526-86051.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86051.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86051.gi%7C284095844%7Cgb%7CEFC49473%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.for.82478-86054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82478-86054.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82478-86054.gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.for.82526-86054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86054.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86054.gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.for.83596-86024.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83596-86024.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83596-86024.gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085992%7Cgb%7CEFC39672%2E1%7C.for.82526-86078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86078.gi%7C284085992%7Cgb%7CEFC39672%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095843%7Cgb%7CEFC49472%2E1%7C.for.83551-86042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83551-86042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83551-86042.gi%7C284095843%7Cgb%7CEFC49472%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.for.83554-86039.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86039.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86039.gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.for.83617-86012.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83617-86012.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83617-86012.gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085851%7Cgb%7CEFC39532%2E1%7C.for.83590-87575.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-87575.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-87575.gi%7C284085851%7Cgb%7CEFC39532%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088147%7Cgb%7CEFC41812%2E1%7C.for.83623-86063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86063.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86063.gi%7C284088147%7Cgb%7CEFC41812%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.for.83623-85985.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-85985.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-85985.gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.for.83554-86027.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86027.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86027.gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.for.82526-87245.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-87245.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-87245.gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084257%7Cgb%7CEFC37951%2E1%7C.for.82526-86387.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86387.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86387.gi%7C284084257%7Cgb%7CEFC37951%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.for.82526-86054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86054.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86054.gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090138%7Cgb%7CEFC43791%2E1%7C.for.82478-86126.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82478-86126.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82478-86126.gi%7C284090138%7Cgb%7CEFC43791%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.for.83596-86042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83596-86042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83596-86042.gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.for.83551-86036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83551-86036.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83551-86036.gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.for.83551-87245.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83551-87245.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83551-87245.gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082687%7Cgb%7CEFC36400%2E1%7C.for.82517-86612.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82517-86612.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82517-86612.gi%7C284082687%7Cgb%7CEFC36400%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086383%7Cgb%7CEFC40060%2E1%7C.for.83623-86051.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86051.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86051.gi%7C284086383%7Cgb%7CEFC40060%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.for.83566-86015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83566-86015.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83566-86015.gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097003%7Cgb%7CEFC50630%2E1%7C.for.83554-86042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86042.gi%7C284097003%7Cgb%7CEFC50630%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.for.83554-86039.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86039.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86039.gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.for.83590-86015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-86015.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-86015.gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.for.82517-86054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82517-86054.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82517-86054.gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082747%7Cgb%7CEFC36459%2E1%7C.for.83590-86033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-86033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-86033.gi%7C284082747%7Cgb%7CEFC36459%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.for.82526-87245.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-87245.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-87245.gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.for.82523-86054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82523-86054.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82523-86054.gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092908%7Cgb%7CEFC46548%2E1%7C.for.82526-86030.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86030.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86030.gi%7C284092908%7Cgb%7CEFC46548%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.for.82478-86039.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82478-86039.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82478-86039.gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.for.82526-86042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86042.gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.for.82526-86060.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86060.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86060.gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094023%7Cgb%7CEFC47658%2E1%7C.for.82514-86093.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82514-86093.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82514-86093.gi%7C284094023%7Cgb%7CEFC47658%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082395%7Cgb%7CEFC36118%2E1%7C.for.82523-86060.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82523-86060.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82523-86060.gi%7C284082395%7Cgb%7CEFC36118%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096530%7Cgb%7CEFC50158%2E1%7C.for.83623-86396.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86396.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86396.gi%7C284096530%7Cgb%7CEFC50158%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.for.83623-86042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86042.gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.for.83659-86015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83659-86015.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83659-86015.gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090154%7Cgb%7CEFC43807%2E1%7C.for.82526-86081.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86081.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86081.gi%7C284090154%7Cgb%7CEFC43807%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083343%7Cgb%7CEFC37047%2E1%7C.for.82517-86024.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82517-86024.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82517-86024.gi%7C284083343%7Cgb%7CEFC37047%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086531%7Cgb%7CEFC40207%2E1%7C.for.83572-86042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83572-86042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83572-86042.gi%7C284086531%7Cgb%7CEFC40207%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.for.83554-86018.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86018.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86018.gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090243%7Cgb%7CEFC43896%2E1%7C.for.82526-86042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86042.gi%7C284090243%7Cgb%7CEFC43896%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.for.82526-86492.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86492.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86492.gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.for.82517-87083.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82517-87083.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82517-87083.gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092203%7Cgb%7CEFC45846%2E1%7C.for.82526-86054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86054.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86054.gi%7C284092203%7Cgb%7CEFC45846%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.for.83593-86075.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83593-86075.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83593-86075.gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.for.83596-86102.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83596-86102.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83596-86102.gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088463%7Cgb%7CEFC42126%2E1%7C.for.83623-86024.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86024.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86024.gi%7C284088463%7Cgb%7CEFC42126%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086579%7Cgb%7CEFC40255%2E1%7C.for.83554-86042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86042.gi%7C284086579%7Cgb%7CEFC40255%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096176%7Cgb%7CEFC49805%2E1%7C.for.82526-86360.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86360.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86360.gi%7C284096176%7Cgb%7CEFC49805%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.for.83590-86036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-86036.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-86036.gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080837%7Cgb%7CEFC35205%2E1%7C.for.83641-86126.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83641-86126.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83641-86126.gi%7C284080837%7Cgb%7CEFC35205%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087676%7Cgb%7CEFC41344%2E1%7C.for.82523-86432.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82523-86432.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82523-86432.gi%7C284087676%7Cgb%7CEFC41344%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087857%7Cgb%7CEFC41524%2E1%7C.for.82526-86021.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86021.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86021.gi%7C284087857%7Cgb%7CEFC41524%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080808%7Cgb%7CEFC35194%2E1%7C.for.83599-86012.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83599-86012.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83599-86012.gi%7C284080808%7Cgb%7CEFC35194%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.for.83590-85994.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-85994.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-85994.gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095310%7Cgb%7CEFC48941%2E1%7C.for.101030-102665.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.101030-102665.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.101030-102665.gi%7C284095310%7Cgb%7CEFC48941%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084277%7Cgb%7CEFC37971%2E1%7C.for.104855-109073.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.104855-109073.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.104855-109073.gi%7C284084277%7Cgb%7CEFC37971%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.for.109610-110919.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109610-110919.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109610-110919.gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.for.109649-110919.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109649-110919.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109649-110919.gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094669%7Cgb%7CEFC48302%2E1%7C.for.109652-110919.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109652-110919.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109652-110919.gi%7C284094669%7Cgb%7CEFC48302%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.for.109634-110913.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109634-110913.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109634-110913.gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.for.109628-110919.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109628-110919.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109628-110919.gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.for.109610-111339.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109610-111339.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109610-111339.gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.for.109616-110967.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109616-110967.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109616-110967.gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.for.109619-111045.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109619-111045.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109619-111045.gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097002%7Cgb%7CEFC50629%2E1%7C.for.109652-110967.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109652-110967.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109652-110967.gi%7C284097002%7Cgb%7CEFC50629%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.for.109637-110937.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109637-110937.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109637-110937.gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.for.109331-110925.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109331-110925.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109331-110925.gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092908%7Cgb%7CEFC46548%2E1%7C.for.109604-111387.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109604-111387.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109604-111387.gi%7C284092908%7Cgb%7CEFC46548%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.for.109616-110988.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109616-110988.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109616-110988.gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.for.109958-110916.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109958-110916.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109958-110916.gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.for.109610-110916.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109610-110916.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109610-110916.gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.for.109541-110931.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109541-110931.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109541-110931.gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.for.109619-114930.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109619-114930.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109619-114930.gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088433%7Cgb%7CEFC42096%2E1%7C.for.109649-111183.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109649-111183.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109649-111183.gi%7C284088433%7Cgb%7CEFC42096%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096508%7Cgb%7CEFC50136%2E1%7C.for.109643-114861.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109643-114861.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109643-114861.gi%7C284096508%7Cgb%7CEFC50136%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086579%7Cgb%7CEFC40255%2E1%7C.for.109637-114897.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109637-114897.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109637-114897.gi%7C284086579%7Cgb%7CEFC40255%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085441%7Cgb%7CEFC39125%2E1%7C.for.119173-120386.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119173-120386.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119173-120386.gi%7C284085441%7Cgb%7CEFC39125%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090460%7Cgb%7CEFC44112%2E1%7C.for.129852-131111.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.129852-131111.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.129852-131111.gi%7C284090460%7Cgb%7CEFC44112%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091118%7Cgb%7CEFC44766%2E1%7C.for.129888-130990.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.129888-130990.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.129888-130990.gi%7C284091118%7Cgb%7CEFC44766%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 25 ...processing 1 of 25 ...processing 2 of 25 ...processing 3 of 25 ...processing 4 of 25 ...processing 5 of 25 ...processing 6 of 25 ...processing 7 of 25 ...processing 8 of 25 ...processing 9 of 25 ...processing 10 of 25 ...processing 11 of 25 ...processing 12 of 25 ...processing 13 of 25 ...processing 14 of 25 ...processing 15 of 25 ...processing 16 of 25 ...processing 17 of 25 ...processing 18 of 25 ...processing 19 of 25 ...processing 20 of 25 ...processing 21 of 25 ...processing 22 of 25 ...processing 23 of 25 ...processing 24 of 25 total clusters:14 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 21 ...processing 1 of 21 ...processing 2 of 21 ...processing 3 of 21 ...processing 4 of 21 ...processing 5 of 21 ...processing 6 of 21 ...processing 7 of 21 ...processing 8 of 21 ...processing 9 of 21 ...processing 10 of 21 ...processing 11 of 21 ...processing 12 of 21 ...processing 13 of 21 ...processing 14 of 21 ...processing 15 of 21 ...processing 16 of 21 ...processing 17 of 21 ...processing 18 of 21 ...processing 19 of 21 ...processing 20 of 21 ...trimming the rest total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 22 ...processing 1 of 22 ...processing 2 of 22 ...processing 3 of 22 ...processing 4 of 22 ...processing 5 of 22 ...processing 6 of 22 ...processing 7 of 22 ...processing 8 of 22 ...processing 9 of 22 ...processing 10 of 22 ...processing 11 of 22 ...processing 12 of 22 ...processing 13 of 22 ...processing 14 of 22 ...processing 15 of 22 ...processing 16 of 22 ...processing 17 of 22 ...processing 18 of 22 ...processing 19 of 22 ...processing 20 of 22 ...processing 21 of 22 total clusters:12 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 20 ...processing 1 of 20 ...processing 2 of 20 ...processing 3 of 20 ...processing 4 of 20 ...processing 5 of 20 ...processing 6 of 20 ...processing 7 of 20 ...processing 8 of 20 ...processing 9 of 20 ...processing 10 of 20 ...processing 11 of 20 ...processing 12 of 20 ...processing 13 of 20 ...processing 14 of 20 ...processing 15 of 20 ...processing 16 of 20 ...processing 17 of 20 ...processing 18 of 20 ...processing 19 of 20 ...trimming the rest ...processing 0 of 10 ...processing 1 of 10 ...processing 2 of 10 ...processing 3 of 10 ...processing 4 of 10 ...processing 5 of 10 ...processing 6 of 10 ...processing 7 of 10 ...processing 8 of 10 ...processing 9 of 10 total clusters:23 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.0-1068.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.0-1068.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.0-1068.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.14508-15775.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.14508-15775.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.14508-15775.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.26842-28089.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.26842-28089.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.26842-28089.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.30554-32472.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.30554-32472.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.30554-32472.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.36905-38337.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.36905-38337.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.36905-38337.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.40119-41760.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.40119-41760.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.40119-41760.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.49167-50404.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.49167-50404.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.49167-50404.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.51091-52517.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.51091-52517.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.51091-52517.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.52826-55600.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.52826-55600.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.52826-55600.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.61869-63690.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.61869-63690.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.61869-63690.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.77994-78991.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.77994-78991.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.77994-78991.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.80892-81850.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.80892-81850.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.80892-81850.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.82716-86883.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.82716-86883.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.82716-86883.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.91757-94210.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.91757-94210.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.91757-94210.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.101229-102851.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.101229-102851.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.101229-102851.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.104829-108873.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.104829-108873.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.104829-108873.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.109809-114661.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.109809-114661.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.109809-114661.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.116418-117119.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.116418-117119.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.116418-117119.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.119146-121197.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.119146-121197.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.119146-121197.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.125273-126287.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.125273-126287.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.125273-126287.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.1025-2898.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.1025-2898.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.1025-2898.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.7134-8687.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.7134-8687.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.7134-8687.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.10846-11729.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.10846-11729.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.10846-11729.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.12608-14641.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.12608-14641.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.12608-14641.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.16212-17785.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.16212-17785.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.16212-17785.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.19908-23518.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.19908-23518.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.19908-23518.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.28613-30052.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.28613-30052.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.28613-30052.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.43139-44430.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.43139-44430.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.43139-44430.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.44460-46068.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.44460-46068.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.44460-46068.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.55889-57367.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.55889-57367.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.55889-57367.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.57762-58650.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.57762-58650.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.57762-58650.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.67523-68255.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.67523-68255.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.67523-68255.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.69358-71793.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.69358-71793.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.69358-71793.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.75544-76608.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.75544-76608.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.75544-76608.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.117391-118195.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.117391-118195.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.117391-118195.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.128664-131113.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.128664-131113.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.128664-131113.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C39 Length: 100272 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:4 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:1 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:3 current j:0 j_size:3 current j:1 j_size:3 current j:2 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C39.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C39.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:13 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13753%7Czinc.for.1-924.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.1-924.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.1-924.Ar_EST_120301b_c13753%7Czinc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19066%7Chypothetical.for.789-2082.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.789-2082.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.789-2082.Ar_EST_120301b_c19066%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig218%7Cnexus.for.334-2773.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.334-2773.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.334-2773.120301b_Contig218%7Cnexus.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14313%7C---NA---.for.2604-4481.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.2604-4481.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.2604-4481.Ar_EST_120301b_c14313%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19310%7C1351925.for.2914-4175.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.2914-4175.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.2914-4175.Ar_EST_120301b_c19310%7C1351925.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12834%7C1351925.for.2793-4091.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.2793-4091.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.2793-4091.Ar_EST_120301b_c12834%7C1351925.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16703%7C454.for.2095-3484.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.2095-3484.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.2095-3484.Ar_EST_120301b_c16703%7C454.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18347%7Cribosomal.for.5241-6295.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.5241-6295.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.5241-6295.Ar_EST_120301b_rep_c18347%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12088%7Cnucleosome.for.4895-6049.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.4895-6049.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.4895-6049.Ar_EST_120301b_rep_c12088%7Cnucleosome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18245%7Ceukaryotic.for.4895-5920.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.4895-5920.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.4895-5920.Ar_EST_120301b_rep_c18245%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3465%7Cexonuclease.for.6573-8065.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.6573-8065.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.6573-8065.Ar_EST_120301b_c3465%7Cexonuclease.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4109%7Cactin.for.8275-9534.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8275-9534.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8275-9534.Ar_EST_120301b_rep_c4109%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5621%7Cactin.for.8469-9548.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8469-9548.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8469-9548.Ar_EST_120301b_rep_c5621%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19797%7Cactin.for.8462-9544.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8462-9544.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8462-9544.Ar_EST_120301b_rep_c19797%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6543%7Cactin.for.8276-9534.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8276-9534.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8276-9534.Ar_EST_120301b_rep_c6543%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17737%7Cactin.for.8403-9496.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8403-9496.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8403-9496.Ar_EST_120301b_rep_c17737%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8147%7Ccofilin.for.8464-9533.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8464-9533.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8464-9533.Ar_EST_120301b_rep_c8147%7Ccofilin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20113%7Cactin-depolymerizing.for.8505-9548.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8505-9548.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8505-9548.Ar_EST_120301b_rep_c20113%7Cactin-depolymerizing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7396%7Cuncharacterized.for.9271-10874.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.9271-10874.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.9271-10874.Ar_EST_120301b_rep_c7396%7Cuncharacterized.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12055%7Ccg18418-pa.for.10263-11531.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.10263-11531.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.10263-11531.Ar_EST_120301b_c12055%7Ccg18418-pa.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4634%7Cprotein.for.11895-13364.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.11895-13364.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.11895-13364.Ar_EST_120301b_rep_c4634%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1801%7Ctumor.for.11297-12731.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.11297-12731.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.11297-12731.Ar_EST_120301b_c1801%7Ctumor.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13099%7Ctumor.for.11414-12710.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.11414-12710.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.11414-12710.Ar_EST_120301b_c13099%7Ctumor.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13018%7Ctumor.for.11957-13023.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.11957-13023.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.11957-13023.Ar_EST_120301b_rep_c13018%7Ctumor.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10348%7Cnb405-g03.for.14482-15853.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.14482-15853.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.14482-15853.Ar_EST_120301b_c10348%7Cnb405-g03.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8849%7Carp2.for.20682-21692.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.20682-21692.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.20682-21692.Ar_EST_120301b_c8849%7Carp2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4195%7Cactin.for.20151-21811.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.20151-21811.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.20151-21811.Ar_EST_120301b_rep_c4195%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12311%7Cc.for.29373-30667.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.29373-30667.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.29373-30667.Ar_EST_120301b_c12311%7Cc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12329%7Ctyrosine.for.32236-33500.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.32236-33500.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.32236-33500.Ar_EST_120301b_c12329%7Ctyrosine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7147%7Cprotein.for.34104-36543.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.34104-36543.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.34104-36543.Ar_EST_120301b_rep_c7147%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13197%7Cprotein.for.33828-35252.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33828-35252.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33828-35252.Ar_EST_120301b_rep_c13197%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12720%7Cprotein.for.35786-37179.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.35786-37179.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.35786-37179.Ar_EST_120301b_c12720%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16530%7Cprotein.for.37347-38707.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.37347-38707.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.37347-38707.Ar_EST_120301b_c16530%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6488%7Cperoxisomal.for.38875-40593.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.38875-40593.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.38875-40593.Ar_EST_120301b_rep_c6488%7Cperoxisomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3260%7Camp-dependent.for.38868-40952.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.38868-40952.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.38868-40952.Ar_EST_120301b_c3260%7Camp-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3131%7Ccarboxypeptidase.for.40763-42063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.40763-42063.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.40763-42063.Ar_EST_120301b_c3131%7Ccarboxypeptidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2100%7Ccarboxypeptidase.for.41304-43144.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.41304-43144.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.41304-43144.Ar_EST_120301b_c2100%7Ccarboxypeptidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c98%7Ckinesin.for.44885-47294.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.44885-47294.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.44885-47294.Ar_EST_120301b_c98%7Ckinesin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18997%7Cchromosome.for.46355-47842.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.46355-47842.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.46355-47842.Ar_EST_120301b_c18997%7Cchromosome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3674%7Cviral.for.47108-49237.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.47108-49237.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.47108-49237.Ar_EST_120301b_c3674%7Cviral.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15127%7Cankyrin.for.50570-51694.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.50570-51694.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.50570-51694.Ar_EST_120301b_c15127%7Cankyrin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c40%7C2-oxoglutarate.for.51287-55022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.51287-55022.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.51287-55022.Ar_EST_120301b_c40%7C2-oxoglutarate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15498%7Cheat.for.55491-57055.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.55491-57055.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.55491-57055.Ar_EST_120301b_c15498%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18376%7Cheat.for.56061-57285.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.56061-57285.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.56061-57285.Ar_EST_120301b_rep_c18376%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10445%7Cacid.for.57635-59202.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.57635-59202.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.57635-59202.Ar_EST_120301b_c10445%7Cacid.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6230%7Cproteasome.for.67388-68889.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.67388-68889.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.67388-68889.Ar_EST_120301b_rep_c6230%7Cproteasome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6671%7Cproteasome.for.67396-68889.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.67396-68889.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.67396-68889.Ar_EST_120301b_rep_c6671%7Cproteasome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18287%7Cvirginia_state_96561_2_lrc14307.for.70151-71575.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.70151-71575.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.70151-71575.Ar_EST_120301b_c18287%7Cvirginia_state_96561_2_lrc14307.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c484%7Cring.for.75125-76585.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.75125-76585.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.75125-76585.Ar_EST_120301b_c484%7Cring.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c447%7Cring.for.75210-76875.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.75210-76875.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.75210-76875.Ar_EST_120301b_c447%7Cring.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9829%7Cap-3.for.76139-77892.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.76139-77892.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.76139-77892.Ar_EST_120301b_c9829%7Cap-3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3233%7Cdelta.for.77329-79597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.77329-79597.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.77329-79597.Ar_EST_120301b_c3233%7Cdelta.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11437%7Cap3d1.for.78861-80064.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.78861-80064.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.78861-80064.Ar_EST_120301b_c11437%7Cap3d1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig730%7Csucrose.for.80010-82314.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.80010-82314.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.80010-82314.120301b_Contig730%7Csucrose.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2139%7Cppaa.for.81749-83046.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.81749-83046.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.81749-83046.Ar_EST_120301b_c2139%7Cppaa.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12678%7Cf-box_lrr-repeat.for.82248-83524.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.82248-83524.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.82248-83524.Ar_EST_120301b_c12678%7Cf-box_lrr-repeat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17905%7Chypothetical.for.87957-89135.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.87957-89135.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.87957-89135.Ar_EST_120301b_rep_c17905%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5855%7Cagencourt_50136586.for.88105-89314.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.88105-89314.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.88105-89314.Ar_EST_120301b_rep_c5855%7Cagencourt_50136586.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18715%7Cest29560.for.88099-89406.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.88099-89406.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.88099-89406.Ar_EST_120301b_rep_c18715%7Cest29560.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6749%7Cpgsp0011j20.for.88034-89440.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.88034-89440.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.88034-89440.Ar_EST_120301b_rep_c6749%7Cpgsp0011j20.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4535%7Cnucleosome.for.87965-89314.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.87965-89314.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.87965-89314.Ar_EST_120301b_rep_c4535%7Cnucleosome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8267%7C60s.for.88442-89564.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.88442-89564.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.88442-89564.Ar_EST_120301b_rep_c8267%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1246%7Cucrcp01_052_g05_t3.for.87968-89140.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.87968-89140.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.87968-89140.Ar_EST_120301b_c1246%7Cucrcp01_052_g05_t3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19666%7Cpredicted.for.89138-90434.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89138-90434.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89138-90434.Ar_EST_120301b_rep_c19666%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6620%7Cprotein.for.89020-90455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89020-90455.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89020-90455.Ar_EST_120301b_rep_c6620%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10160%7Cubiquitin.for.94605-95858.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.94605-95858.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.94605-95858.Ar_EST_120301b_c10160%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig284%7Cubiquitin.for.93053-95923.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.93053-95923.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.93053-95923.120301b_Contig284%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2103%7Cubiquitin.for.92176-94058.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.92176-94058.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.92176-94058.Ar_EST_120301b_c2103%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3295%7Chistone.for.95180-96441.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.95180-96441.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.95180-96441.Ar_EST_120301b_c3295%7Chistone.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c49%7Cadenylyl.for.96722-98599.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.96722-98599.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.96722-98599.Ar_EST_120301b_c49%7Cadenylyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5021%7Cadenylyl.for.97187-98435.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.97187-98435.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.97187-98435.Ar_EST_120301b_rep_c5021%7Cadenylyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig169%7Ctrna-dihydrouridine.for.97813-99168.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.97813-99168.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.97813-99168.120301b_Contig169%7Ctrna-dihydrouridine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11871%7Chypothetical.for.99403-100272.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.99403-100272.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.99403-100272.Ar_EST_120301b_c11871%7Chypothetical.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 total clusters:38 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:31 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:39 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:41 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:39 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:32 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:42 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:39 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:47 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:31 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:24 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086942%7Cgb%7CEFC40615%2E1%7C.for.1825-2792.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.1825-2792.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.1825-2792.gi%7C284086942%7Cgb%7CEFC40615%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089546%7Cgb%7CEFC43203%2E1%7C.for.4896-6250.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.4896-6250.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.4896-6250.gi%7C284089546%7Cgb%7CEFC43203%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095488%7Cgb%7CEFC49119%2E1%7C.for.4911-6250.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.4911-6250.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.4911-6250.gi%7C284095488%7Cgb%7CEFC49119%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097237%7Cgb%7CEFC50864%2E1%7C.for.6461-7958.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.6461-7958.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.6461-7958.gi%7C284097237%7Cgb%7CEFC50864%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084860%7Cgb%7CEFC38548%2E1%7C.for.7493-8939.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.7493-8939.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.7493-8939.gi%7C284084860%7Cgb%7CEFC38548%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082861%7Cgb%7CEFC36571%2E1%7C.for.8310-9520.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8310-9520.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8310-9520.gi%7C284082861%7Cgb%7CEFC36571%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093132%7Cgb%7CEFC46771%2E1%7C.for.9183-11023.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.9183-11023.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.9183-11023.gi%7C284093132%7Cgb%7CEFC46771%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089301%7Cgb%7CEFC42959%2E1%7C.for.10478-12039.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.10478-12039.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.10478-12039.gi%7C284089301%7Cgb%7CEFC42959%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095143%7Cgb%7CEFC48775%2E1%7C.for.10805-12048.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.10805-12048.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.10805-12048.gi%7C284095143%7Cgb%7CEFC48775%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093567%7Cgb%7CEFC47204%2E1%7C.for.13538-14646.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.13538-14646.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.13538-14646.gi%7C284093567%7Cgb%7CEFC47204%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083404%7Cgb%7CEFC37108%2E1%7C.for.15972-17740.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.15972-17740.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.15972-17740.gi%7C284083404%7Cgb%7CEFC37108%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088825%7Cgb%7CEFC42486%2E1%7C.for.16011-17746.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.16011-17746.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.16011-17746.gi%7C284088825%7Cgb%7CEFC42486%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084491%7Cgb%7CEFC38183%2E1%7C.for.20282-21918.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.20282-21918.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.20282-21918.gi%7C284084491%7Cgb%7CEFC38183%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083516%7Cgb%7CEFC37218%2E1%7C.for.24892-25899.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.24892-25899.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.24892-25899.gi%7C284083516%7Cgb%7CEFC37218%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083359%7Cgb%7CEFC37063%2E1%7C.for.33859-38447.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33859-38447.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33859-38447.gi%7C284083359%7Cgb%7CEFC37063%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082638%7Cgb%7CEFC36352%2E1%7C.for.33862-38664.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-38664.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-38664.gi%7C284082638%7Cgb%7CEFC36352%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086918%7Cgb%7CEFC40591%2E1%7C.for.33859-38664.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33859-38664.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33859-38664.gi%7C284086918%7Cgb%7CEFC40591%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083579%7Cgb%7CEFC37281%2E1%7C.for.33835-38453.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33835-38453.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33835-38453.gi%7C284083579%7Cgb%7CEFC37281%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096503%7Cgb%7CEFC50131%2E1%7C.for.33874-38615.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33874-38615.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33874-38615.gi%7C284096503%7Cgb%7CEFC50131%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091223%7Cgb%7CEFC44871%2E1%7C.for.33862-38447.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-38447.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-38447.gi%7C284091223%7Cgb%7CEFC44871%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086695%7Cgb%7CEFC40370%2E1%7C.for.33859-38459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33859-38459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33859-38459.gi%7C284086695%7Cgb%7CEFC40370%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093963%7Cgb%7CEFC47599%2E1%7C.for.33880-38616.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33880-38616.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33880-38616.gi%7C284093963%7Cgb%7CEFC47599%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089381%7Cgb%7CEFC43039%2E1%7C.for.33862-37772.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-37772.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-37772.gi%7C284089381%7Cgb%7CEFC43039%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086532%7Cgb%7CEFC40208%2E1%7C.for.33883-38447.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33883-38447.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33883-38447.gi%7C284086532%7Cgb%7CEFC40208%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083434%7Cgb%7CEFC37137%2E1%7C.for.33874-38459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33874-38459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33874-38459.gi%7C284083434%7Cgb%7CEFC37137%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084818%7Cgb%7CEFC38507%2E1%7C.for.33874-38459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33874-38459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33874-38459.gi%7C284084818%7Cgb%7CEFC38507%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092043%7Cgb%7CEFC45687%2E1%7C.for.33862-38357.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-38357.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-38357.gi%7C284092043%7Cgb%7CEFC45687%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083990%7Cgb%7CEFC37687%2E1%7C.for.33868-38453.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33868-38453.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33868-38453.gi%7C284083990%7Cgb%7CEFC37687%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094052%7Cgb%7CEFC47687%2E1%7C.for.33820-38636.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33820-38636.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33820-38636.gi%7C284094052%7Cgb%7CEFC47687%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085363%7Cgb%7CEFC39047%2E1%7C.for.33868-38435.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33868-38435.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33868-38435.gi%7C284085363%7Cgb%7CEFC39047%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086873%7Cgb%7CEFC40547%2E1%7C.for.33880-38607.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33880-38607.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33880-38607.gi%7C284086873%7Cgb%7CEFC40547%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083848%7Cgb%7CEFC37547%2E1%7C.for.33808-37841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33808-37841.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33808-37841.gi%7C284083848%7Cgb%7CEFC37547%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092675%7Cgb%7CEFC46316%2E1%7C.for.33862-38303.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-38303.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-38303.gi%7C284092675%7Cgb%7CEFC46316%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085442%7Cgb%7CEFC39126%2E1%7C.for.33874-38613.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33874-38613.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33874-38613.gi%7C284085442%7Cgb%7CEFC39126%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083453%7Cgb%7CEFC37156%2E1%7C.for.33880-38252.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33880-38252.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33880-38252.gi%7C284083453%7Cgb%7CEFC37156%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085964%7Cgb%7CEFC39644%2E1%7C.for.33820-37556.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33820-37556.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33820-37556.gi%7C284085964%7Cgb%7CEFC39644%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094593%7Cgb%7CEFC48227%2E1%7C.for.38975-41324.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.38975-41324.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.38975-41324.gi%7C284094593%7Cgb%7CEFC48227%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092016%7Cgb%7CEFC45660%2E1%7C.for.40930-43013.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.40930-43013.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.40930-43013.gi%7C284092016%7Cgb%7CEFC45660%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096618%7Cgb%7CEFC50246%2E1%7C.for.41125-42953.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.41125-42953.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.41125-42953.gi%7C284096618%7Cgb%7CEFC50246%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093000%7Cgb%7CEFC46640%2E1%7C.for.49360-50363.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.49360-50363.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.49360-50363.gi%7C284093000%7Cgb%7CEFC46640%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094695%7Cgb%7CEFC48328%2E1%7C.for.51149-54740.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.51149-54740.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.51149-54740.gi%7C284094695%7Cgb%7CEFC48328%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087414%7Cgb%7CEFC41084%2E1%7C.for.51149-54521.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.51149-54521.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.51149-54521.gi%7C284087414%7Cgb%7CEFC41084%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091446%7Cgb%7CEFC45093%2E1%7C.for.54887-57609.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57609.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57609.gi%7C284091446%7Cgb%7CEFC45093%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094819%7Cgb%7CEFC48452%2E1%7C.for.55097-57597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.55097-57597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.55097-57597.gi%7C284094819%7Cgb%7CEFC48452%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084267%7Cgb%7CEFC37961%2E1%7C.for.55241-57603.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.55241-57603.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.55241-57603.gi%7C284084267%7Cgb%7CEFC37961%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092327%7Cgb%7CEFC45969%2E1%7C.for.54986-57609.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54986-57609.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54986-57609.gi%7C284092327%7Cgb%7CEFC45969%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082776%7Cgb%7CEFC36488%2E1%7C.for.54887-57609.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57609.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57609.gi%7C284082776%7Cgb%7CEFC36488%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084526%7Cgb%7CEFC38218%2E1%7C.for.54956-57597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54956-57597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54956-57597.gi%7C284084526%7Cgb%7CEFC38218%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085272%7Cgb%7CEFC38957%2E1%7C.for.54887-57627.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57627.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57627.gi%7C284085272%7Cgb%7CEFC38957%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085240%7Cgb%7CEFC38925%2E1%7C.for.54887-57627.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57627.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57627.gi%7C284085240%7Cgb%7CEFC38925%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085885%7Cgb%7CEFC39565%2E1%7C.for.54887-57627.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57627.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57627.gi%7C284085885%7Cgb%7CEFC39565%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C33694258%7Cgb%7CAAQ24867%2E1%7C.for.54887-57609.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57609.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57609.gi%7C33694258%7Cgb%7CAAQ24867%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089387%7Cgb%7CEFC43045%2E1%7C.for.54887-57609.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57609.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57609.gi%7C284089387%7Cgb%7CEFC43045%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089144%7Cgb%7CEFC42803%2E1%7C.for.59122-61977.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59122-61977.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59122-61977.gi%7C284089144%7Cgb%7CEFC42803%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082068%7Cgb%7CEFC35853%2E1%7C.for.59104-61917.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59104-61917.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59104-61917.gi%7C284082068%7Cgb%7CEFC35853%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084087%7Cgb%7CEFC37783%2E1%7C.for.59086-61917.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59086-61917.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59086-61917.gi%7C284084087%7Cgb%7CEFC37783%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088982%7Cgb%7CEFC42642%2E1%7C.for.59083-61911.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59083-61911.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59083-61911.gi%7C284088982%7Cgb%7CEFC42642%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089876%7Cgb%7CEFC43531%2E1%7C.for.59116-62028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59116-62028.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59116-62028.gi%7C284089876%7Cgb%7CEFC43531%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083134%7Cgb%7CEFC36841%2E1%7C.for.59113-61911.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59113-61911.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59113-61911.gi%7C284083134%7Cgb%7CEFC36841%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093774%7Cgb%7CEFC47410%2E1%7C.for.59047-62019.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59047-62019.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59047-62019.gi%7C284093774%7Cgb%7CEFC47410%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087481%7Cgb%7CEFC41150%2E1%7C.for.59086-61956.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59086-61956.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59086-61956.gi%7C284087481%7Cgb%7CEFC41150%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086252%7Cgb%7CEFC39930%2E1%7C.for.59212-61932.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59212-61932.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59212-61932.gi%7C284086252%7Cgb%7CEFC39930%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089785%7Cgb%7CEFC43440%2E1%7C.for.59116-62019.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59116-62019.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59116-62019.gi%7C284089785%7Cgb%7CEFC43440%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089211%7Cgb%7CEFC42870%2E1%7C.for.59146-61911.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59146-61911.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59146-61911.gi%7C284089211%7Cgb%7CEFC42870%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084234%7Cgb%7CEFC37929%2E1%7C.for.59059-62019.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59059-62019.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59059-62019.gi%7C284084234%7Cgb%7CEFC37929%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089683%7Cgb%7CEFC43339%2E1%7C.for.59092-61917.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-61917.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-61917.gi%7C284089683%7Cgb%7CEFC43339%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081057%7Cgb%7CEFC35279%2E1%7C.for.59092-62016.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-62016.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-62016.gi%7C284081057%7Cgb%7CEFC35279%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093932%7Cgb%7CEFC47568%2E1%7C.for.59104-61917.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59104-61917.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59104-61917.gi%7C284093932%7Cgb%7CEFC47568%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082314%7Cgb%7CEFC36048%2E1%7C.for.59092-61917.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-61917.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-61917.gi%7C284082314%7Cgb%7CEFC36048%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087499%7Cgb%7CEFC41168%2E1%7C.for.59203-61941.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59203-61941.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59203-61941.gi%7C284087499%7Cgb%7CEFC41168%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094795%7Cgb%7CEFC48428%2E1%7C.for.59119-62010.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59119-62010.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59119-62010.gi%7C284094795%7Cgb%7CEFC48428%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084505%7Cgb%7CEFC38197%2E1%7C.for.59116-61923.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59116-61923.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59116-61923.gi%7C284084505%7Cgb%7CEFC38197%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082806%7Cgb%7CEFC36517%2E1%7C.for.59134-61917.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59134-61917.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59134-61917.gi%7C284082806%7Cgb%7CEFC36517%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084837%7Cgb%7CEFC38526%2E1%7C.for.59092-62028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-62028.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-62028.gi%7C284084837%7Cgb%7CEFC38526%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091590%7Cgb%7CEFC45236%2E1%7C.for.59116-61968.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59116-61968.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59116-61968.gi%7C284091590%7Cgb%7CEFC45236%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087889%7Cgb%7CEFC41556%2E1%7C.for.59095-62019.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59095-62019.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59095-62019.gi%7C284087889%7Cgb%7CEFC41556%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084171%7Cgb%7CEFC37866%2E1%7C.for.59092-61917.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-61917.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-61917.gi%7C284084171%7Cgb%7CEFC37866%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093137%7Cgb%7CEFC46776%2E1%7C.for.59107-62082.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59107-62082.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59107-62082.gi%7C284093137%7Cgb%7CEFC46776%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087305%7Cgb%7CEFC40976%2E1%7C.for.59059-62067.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59059-62067.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59059-62067.gi%7C284087305%7Cgb%7CEFC40976%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092523%7Cgb%7CEFC46165%2E1%7C.for.59086-61962.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59086-61962.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59086-61962.gi%7C284092523%7Cgb%7CEFC46165%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083624%7Cgb%7CEFC37325%2E1%7C.for.59092-61911.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-61911.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-61911.gi%7C284083624%7Cgb%7CEFC37325%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092041%7Cgb%7CEFC45685%2E1%7C.for.59206-61941.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59206-61941.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59206-61941.gi%7C284092041%7Cgb%7CEFC45685%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080810%7Cgb%7CEFC35195%2E1%7C.for.60500-61911.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.60500-61911.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.60500-61911.gi%7C284080810%7Cgb%7CEFC35195%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092124%7Cgb%7CEFC45767%2E1%7C.for.67410-68831.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.67410-68831.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.67410-68831.gi%7C284092124%7Cgb%7CEFC45767%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090008%7Cgb%7CEFC43662%2E1%7C.for.78206-80506.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.78206-80506.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.78206-80506.gi%7C284090008%7Cgb%7CEFC43662%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096915%7Cgb%7CEFC50542%2E1%7C.for.80135-82254.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.80135-82254.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.80135-82254.gi%7C284096915%7Cgb%7CEFC50542%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085103%7Cgb%7CEFC38789%2E1%7C.for.80057-82221.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.80057-82221.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.80057-82221.gi%7C284085103%7Cgb%7CEFC38789%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095199%7Cgb%7CEFC48830%2E1%7C.for.84894-87733.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.84894-87733.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.84894-87733.gi%7C284095199%7Cgb%7CEFC48830%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090474%7Cgb%7CEFC44126%2E1%7C.for.89200-90179.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89200-90179.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89200-90179.gi%7C284090474%7Cgb%7CEFC44126%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088600%7Cgb%7CEFC42263%2E1%7C.for.89823-91248.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89823-91248.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89823-91248.gi%7C284088600%7Cgb%7CEFC42263%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089013%7Cgb%7CEFC42673%2E1%7C.for.89936-91248.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89936-91248.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89936-91248.gi%7C284089013%7Cgb%7CEFC42673%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089693%7Cgb%7CEFC43349%2E1%7C.for.89820-91221.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89820-91221.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89820-91221.gi%7C284089693%7Cgb%7CEFC43349%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088684%7Cgb%7CEFC42346%2E1%7C.for.89826-91155.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89826-91155.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89826-91155.gi%7C284088684%7Cgb%7CEFC42346%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090665%7Cgb%7CEFC44316%2E1%7C.for.93196-95879.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.93196-95879.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.93196-95879.gi%7C284090665%7Cgb%7CEFC44316%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095605%7Cgb%7CEFC49235%2E1%7C.for.96759-98430.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.96759-98430.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.96759-98430.gi%7C284095605%7Cgb%7CEFC49235%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 ...processing 0 of 10 ...processing 1 of 10 ...processing 2 of 10 ...processing 3 of 10 ...processing 4 of 10 ...processing 5 of 10 ...processing 6 of 10 ...processing 7 of 10 ...processing 8 of 10 ...processing 9 of 10 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 22 ...processing 1 of 22 ...processing 2 of 22 ...processing 3 of 22 ...processing 4 of 22 ...processing 5 of 22 ...processing 6 of 22 ...processing 7 of 22 ...processing 8 of 22 ...processing 9 of 22 ...processing 10 of 22 ...processing 11 of 22 ...processing 12 of 22 ...processing 13 of 22 ...processing 14 of 22 ...processing 15 of 22 ...processing 16 of 22 ...processing 17 of 22 ...processing 18 of 22 ...processing 19 of 22 ...trimming the rest total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 ...processing 0 of 11 ...processing 1 of 11 ...processing 2 of 11 ...processing 3 of 11 ...processing 4 of 11 ...processing 5 of 11 ...processing 6 of 11 ...processing 7 of 11 ...processing 8 of 11 ...processing 9 of 11 ...processing 10 of 11 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:23 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 26 ...processing 1 of 26 ...processing 2 of 26 ...processing 3 of 26 ...processing 4 of 26 ...processing 5 of 26 ...processing 6 of 26 ...processing 7 of 26 ...processing 8 of 26 ...processing 9 of 26 ...processing 10 of 26 ...processing 11 of 26 ...processing 12 of 26 ...processing 13 of 26 ...processing 14 of 26 ...processing 15 of 26 ...processing 16 of 26 ...processing 17 of 26 ...processing 18 of 26 ...processing 19 of 26 ...processing 20 of 26 ...processing 21 of 26 ...processing 22 of 26 ...trimming the rest total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 10 ...processing 1 of 10 ...processing 2 of 10 ...processing 3 of 10 ...processing 4 of 10 ...processing 5 of 10 ...processing 6 of 10 ...processing 7 of 10 ...processing 8 of 10 ...processing 9 of 10 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:15 now processing 0 total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 total clusters:15 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 10 ...processing 1 of 10 ...processing 2 of 10 ...processing 3 of 10 ...processing 4 of 10 ...processing 5 of 10 ...processing 6 of 10 ...processing 7 of 10 ...processing 8 of 10 ...processing 9 of 10 total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:15 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 20 ...processing 1 of 20 ...processing 2 of 20 ...processing 3 of 20 ...processing 4 of 20 ...processing 5 of 20 ...processing 6 of 20 ...processing 7 of 20 ...processing 8 of 20 ...processing 9 of 20 ...processing 10 of 20 ...processing 11 of 20 ...processing 12 of 20 ...processing 13 of 20 ...processing 14 of 20 ...processing 15 of 20 ...processing 16 of 20 ...processing 17 of 20 ...processing 18 of 20 ...processing 19 of 20 ...trimming the rest ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 20 ...processing 1 of 20 ...processing 2 of 20 ...processing 3 of 20 ...processing 4 of 20 ...processing 5 of 20 ...processing 6 of 20 ...processing 7 of 20 ...processing 8 of 20 ...processing 9 of 20 ...processing 10 of 20 ...processing 11 of 20 ...processing 12 of 20 ...processing 13 of 20 ...processing 14 of 20 ...processing 15 of 20 ...processing 16 of 20 ...processing 17 of 20 ...processing 18 of 20 ...processing 19 of 20 ...trimming the rest total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.6660-7758.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.6660-7758.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.6660-7758.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.10462-11848.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.10462-11848.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.10462-11848.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.13353-14446.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.13353-14446.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.13353-14446.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.14681-15653.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.14681-15653.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.14681-15653.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.20345-21718.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.20345-21718.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.20345-21718.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.32435-33316.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.32435-33316.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.32435-33316.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.39067-42944.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.39067-42944.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.39067-42944.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.45084-49037.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.45084-49037.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.45084-49037.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.59291-61882.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.59291-61882.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.59291-61882.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.80209-82114.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.80209-82114.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.80209-82114.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.88298-89260.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.88298-89260.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.88298-89260.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.92375-95723.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.92375-95723.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.92375-95723.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.97137-98274.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.97137-98274.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.97137-98274.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.533-4449.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.533-4449.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.533-4449.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.4956-6050.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.4956-6050.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.4956-6050.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.7628-10823.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.7628-10823.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.7628-10823.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.11496-13164.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.11496-13164.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.11496-13164.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.24994-25708.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.24994-25708.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.24994-25708.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.29572-30475.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.29572-30475.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.29572-30475.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.34007-38507.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.34007-38507.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.34007-38507.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.50769-54822.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.50769-54822.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.50769-54822.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.55086-57427.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.55086-57427.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.55086-57427.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.57834-59002.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.57834-59002.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.57834-59002.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.67587-68691.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.67587-68691.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.67587-68691.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.70350-71375.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.70350-71375.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.70350-71375.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.75324-80306.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.75324-80306.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.75324-80306.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.81948-83324.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.81948-83324.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.81948-83324.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.85060-87533.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.85060-87533.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.85060-87533.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.89219-91048.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.89219-91048.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.89219-91048.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.95379-96241.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.95379-96241.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.95379-96241.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.96958-98230.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.96958-98230.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.96958-98230.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.99602-100272.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.99602-100272.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.99602-100272.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C41 Length: 154535 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:4 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:1 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:8 current j:0 j_size:8 current j:1 j_size:8 current j:2 j_size:8 current j:3 j_size:8 current j:4 j_size:8 current j:5 j_size:8 current j:6 j_size:8 current j:7 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C41.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C41.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:5 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18484%7Chydroxyproline-rich.for.2187-3523.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.2187-3523.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.2187-3523.Ar_EST_120301b_c18484%7Chydroxyproline-rich.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1478%7Cring.for.4286-5745.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.4286-5745.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.4286-5745.Ar_EST_120301b_c1478%7Cring.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17193%7Cf-box.for.5269-6583.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.5269-6583.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.5269-6583.Ar_EST_120301b_c17193%7Cf-box.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4442%7Ceukaryotic.for.10165-11796.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.10165-11796.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.10165-11796.Ar_EST_120301b_rep_c4442%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8843%7Cx-ray.for.7105-8533.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7105-8533.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7105-8533.Ar_EST_120301b_c8843%7Cx-ray.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14364%7Ceukaryotic.for.7508-11779.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7508-11779.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7508-11779.Ar_EST_120301b_rep_c14364%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3817%7Cx-ray.for.7840-9618.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7840-9618.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7840-9618.Ar_EST_120301b_c3817%7Cx-ray.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9670%7Ceukaryotic.for.10491-11699.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.10491-11699.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.10491-11699.Ar_EST_120301b_rep_c9670%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19424%7Cx-ray.for.7408-8427.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7408-8427.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7408-8427.Ar_EST_120301b_rep_c19424%7Cx-ray.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8252%7Cser.for.13210-14765.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.13210-14765.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.13210-14765.Ar_EST_120301b_c8252%7Cser.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11587%7Cpredicted.for.14122-15513.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.14122-15513.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.14122-15513.Ar_EST_120301b_c11587%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3305%7Calpha-l-glutamate.for.16307-18409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.16307-18409.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.16307-18409.Ar_EST_120301b_c3305%7Calpha-l-glutamate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11608%7Cribosomal.for.16177-17586.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.16177-17586.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.16177-17586.Ar_EST_120301b_c11608%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8254%7Calpha-l-glutamate.for.17251-18334.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.17251-18334.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.17251-18334.Ar_EST_120301b_c8254%7Calpha-l-glutamate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1594%7Cformate.for.18210-20004.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.18210-20004.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.18210-20004.Ar_EST_120301b_c1594%7Cformate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9408%7Chypothetical.for.19279-21053.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.19279-21053.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.19279-21053.Ar_EST_120301b_c9408%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17501%7Csignal.for.21176-22828.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.21176-22828.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.21176-22828.Ar_EST_120301b_c17501%7Csignal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6353%7Ceukaryotic.for.25430-27136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.25430-27136.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.25430-27136.Ar_EST_120301b_rep_c6353%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5611%7Ceukaryotic.for.24776-27122.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.24776-27122.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.24776-27122.Ar_EST_120301b_rep_c5611%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig227%7Czinc.for.26362-27835.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.26362-27835.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.26362-27835.120301b_Contig227%7Czinc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20371%7Chypothetical.for.27387-29476.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.27387-29476.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.27387-29476.Ar_EST_120301b_c20371%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2180%7Cpredicted.for.28305-29601.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.28305-29601.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.28305-29601.Ar_EST_120301b_c2180%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c249%7Ccalmodulin.for.29478-30871.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29478-30871.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29478-30871.Ar_EST_120301b_c249%7Ccalmodulin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19994%7Cacyl-.for.30216-31226.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.30216-31226.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.30216-31226.Ar_EST_120301b_rep_c19994%7Cacyl-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1202%7Cwd-40.for.31015-32417.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.31015-32417.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.31015-32417.120301b_Contig1202%7Cwd-40.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13644%7Cserine.for.30760-32079.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.30760-32079.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.30760-32079.Ar_EST_120301b_c13644%7Cserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13183%7C---NA---.for.33943-35220.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.33943-35220.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.33943-35220.Ar_EST_120301b_c13183%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9362%7Cprotein.for.34412-35861.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.34412-35861.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.34412-35861.Ar_EST_120301b_c9362%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c276%7Cprotein.for.35235-36619.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.35235-36619.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.35235-36619.Ar_EST_120301b_c276%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15761%7C---NA---.for.36991-38330.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.36991-38330.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.36991-38330.Ar_EST_120301b_c15761%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8595%7C---NA---.for.38092-39496.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.38092-39496.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.38092-39496.Ar_EST_120301b_c8595%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14176%7Cdg2-90j1.for.39278-40527.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.39278-40527.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.39278-40527.Ar_EST_120301b_c14176%7Cdg2-90j1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17402%7Cprotein.for.40329-41323.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.40329-41323.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.40329-41323.Ar_EST_120301b_c17402%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15139%7C-.for.41265-42587.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.41265-42587.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.41265-42587.Ar_EST_120301b_c15139%7C-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18485%7Cmicrotubule-associated.for.41154-42264.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.41154-42264.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.41154-42264.Ar_EST_120301b_c18485%7Cmicrotubule-associated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2523%7Cnuclear.for.41989-43342.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.41989-43342.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.41989-43342.Ar_EST_120301b_c2523%7Cnuclear.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1188%7Ccytoplasmic.for.43231-44554.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.43231-44554.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.43231-44554.Ar_EST_120301b_c1188%7Ccytoplasmic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15535%7Cmajor.for.44232-45248.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.44232-45248.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.44232-45248.Ar_EST_120301b_c15535%7Cmajor.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13992%7Cmajor.for.45074-46353.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.45074-46353.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.45074-46353.Ar_EST_120301b_c13992%7Cmajor.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5585%7Cbax.for.51794-53356.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.51794-53356.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.51794-53356.Ar_EST_120301b_rep_c5585%7Cbax.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig746%7Chypothetical.for.53525-54999.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.53525-54999.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.53525-54999.120301b_Contig746%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10918%7Csomething.for.56330-57676.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.56330-57676.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.56330-57676.Ar_EST_120301b_c10918%7Csomething.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11928%7Csomething.for.57498-59333.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.57498-59333.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.57498-59333.Ar_EST_120301b_c11928%7Csomething.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17010%7Cleucine.for.57436-58393.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.57436-58393.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.57436-58393.Ar_EST_120301b_c17010%7Cleucine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c211%7Cbeta-.for.65659-67125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.65659-67125.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.65659-67125.Ar_EST_120301b_c211%7Cbeta-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig490%7Cg-protein.for.66457-68388.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66457-68388.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66457-68388.120301b_Contig490%7Cg-protein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig117%7Cheat.for.67633-70247.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.67633-70247.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.67633-70247.120301b_Contig117%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2590%7Cmethyltransferase.for.70139-71511.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.70139-71511.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.70139-71511.Ar_EST_120301b_c2590%7Cmethyltransferase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17137%7Chypothetical.for.70937-72211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.70937-72211.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.70937-72211.Ar_EST_120301b_c17137%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12127%7Cbag.for.72882-74181.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.72882-74181.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.72882-74181.Ar_EST_120301b_c12127%7Cbag.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11701%7Calpha.for.73539-75194.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.73539-75194.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.73539-75194.Ar_EST_120301b_c11701%7Calpha.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11059%7C---NA---.for.74908-75962.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.74908-75962.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.74908-75962.Ar_EST_120301b_c11059%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14862%7Cpredicted.for.75374-76344.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.75374-76344.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.75374-76344.Ar_EST_120301b_c14862%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c21%7Ctrehalose-6-phosphate.for.75748-78779.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.75748-78779.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.75748-78779.Ar_EST_120301b_c21%7Ctrehalose-6-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15607%7C-trehalose-phosphate.for.77246-78385.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.77246-78385.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.77246-78385.Ar_EST_120301b_rep_c15607%7C-trehalose-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15030%7C-trehalose-phosphate.for.75564-76902.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.75564-76902.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.75564-76902.Ar_EST_120301b_c15030%7C-trehalose-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16719%7C---NA---.for.78376-79899.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.78376-79899.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.78376-79899.Ar_EST_120301b_c16719%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4679%7Ccalcium.for.79728-81631.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.79728-81631.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.79728-81631.Ar_EST_120301b_rep_c4679%7Ccalcium.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6123%7Ccalcium-binding.for.79688-81126.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.79688-81126.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.79688-81126.Ar_EST_120301b_rep_c6123%7Ccalcium-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c192%7C40s.for.82195-83413.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82195-83413.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82195-83413.Ar_EST_120301b_c192%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19660%7C40s.for.82241-83413.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82241-83413.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82241-83413.Ar_EST_120301b_rep_c19660%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20551%7C40s.for.82228-83501.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82228-83501.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82228-83501.Ar_EST_120301b_rep_c20551%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19968%7Cribosomal.for.82233-83376.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82233-83376.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82233-83376.Ar_EST_120301b_rep_c19968%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19279%7Cgolgi.for.83109-84409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.83109-84409.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.83109-84409.Ar_EST_120301b_c19279%7Cgolgi.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12101%7Cgolgi.for.83398-84791.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.83398-84791.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.83398-84791.Ar_EST_120301b_c12101%7Cgolgi.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14459%7Cterminal.for.85226-86142.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.85226-86142.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.85226-86142.Ar_EST_120301b_c14459%7Cterminal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11091%7Ccell.for.87167-88894.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.87167-88894.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.87167-88894.Ar_EST_120301b_c11091%7Ccell.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16049%7Cn-acetylglucosaminylphosphatidylinositol.for.91301-92567.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.91301-92567.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.91301-92567.Ar_EST_120301b_c16049%7Cn-acetylglucosaminylphosphatidylinositol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10463%7Cpolycystin.for.93843-95353.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.93843-95353.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.93843-95353.Ar_EST_120301b_c10463%7Cpolycystin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19139%7C---NA---.for.97938-99210.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.97938-99210.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.97938-99210.Ar_EST_120301b_c19139%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19439%7C1106908803323.for.97484-98616.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.97484-98616.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.97484-98616.Ar_EST_120301b_c19439%7C1106908803323.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8788%7Cp02431_mmt-2407_g07_026.for.97690-99044.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.97690-99044.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.97690-99044.Ar_EST_120301b_c8788%7Cp02431_mmt-2407_g07_026.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18344%7Csjs.for.102945-104249.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.102945-104249.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.102945-104249.Ar_EST_120301b_c18344%7Csjs.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11384%7Ctubby.for.103787-105337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.103787-105337.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.103787-105337.Ar_EST_120301b_c11384%7Ctubby.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1737%7Cgaf.for.105107-106111.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.105107-106111.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.105107-106111.Ar_EST_120301b_c1737%7Cgaf.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c764%7Cwd.for.108045-109340.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.108045-109340.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.108045-109340.Ar_EST_120301b_c764%7Cwd.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig429%7Cprotein.for.108478-110082.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.108478-110082.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.108478-110082.120301b_Contig429%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11559%7Csodium-coupled.for.109747-111803.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.109747-111803.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.109747-111803.Ar_EST_120301b_c11559%7Csodium-coupled.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4314%7Cadp-ribosylation.for.112569-113963.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112569-113963.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112569-113963.Ar_EST_120301b_rep_c4314%7Cadp-ribosylation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c564%7Cribosomal.for.113229-114795.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.113229-114795.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.113229-114795.Ar_EST_120301b_c564%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6629%7Chypothetical.for.116163-117627.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.116163-117627.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.116163-117627.Ar_EST_120301b_rep_c6629%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20242%7Chydra.for.116171-117286.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.116171-117286.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.116171-117286.Ar_EST_120301b_rep_c20242%7Chydra.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17271%7Chx350990.for.118102-119434.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.118102-119434.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.118102-119434.Ar_EST_120301b_c17271%7Chx350990.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13812%7Creinhardtii.for.123923-125193.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.123923-125193.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.123923-125193.Ar_EST_120301b_c13812%7Creinhardtii.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8787%7Ctraf-type.for.127786-129861.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.127786-129861.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.127786-129861.Ar_EST_120301b_c8787%7Ctraf-type.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1865%7Cprotein.for.130511-131973.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.130511-131973.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.130511-131973.Ar_EST_120301b_c1865%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17512%7Cpredicted.for.131444-132940.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.131444-132940.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.131444-132940.Ar_EST_120301b_c17512%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10556%7Cpredicted.for.132788-134373.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.132788-134373.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.132788-134373.Ar_EST_120301b_c10556%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig718%7Cci569863.for.134029-135481.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.134029-135481.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.134029-135481.120301b_Contig718%7Cci569863.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2633%7Cprotein.for.134795-136208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.134795-136208.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.134795-136208.Ar_EST_120301b_c2633%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16910%7Cabc.for.137462-139213.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.137462-139213.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.137462-139213.Ar_EST_120301b_c16910%7Cabc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1871%7Catp-binding.for.139326-141444.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.139326-141444.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.139326-141444.Ar_EST_120301b_c1871%7Catp-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17554%7Cby908063.for.138639-140232.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.138639-140232.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.138639-140232.Ar_EST_120301b_c17554%7Cby908063.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11060%7Cpredicted.for.141427-142899.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.141427-142899.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.141427-142899.Ar_EST_120301b_c11060%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13278%7Ca65o08n1.for.142316-143625.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.142316-143625.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.142316-143625.Ar_EST_120301b_c13278%7Ca65o08n1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17268%7C---NA---.for.142931-144237.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.142931-144237.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.142931-144237.Ar_EST_120301b_c17268%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15928%7Cig.for.146738-148264.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.146738-148264.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.146738-148264.Ar_EST_120301b_c15928%7Cig.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2769%7Cprotein.for.149095-151248.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.149095-151248.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.149095-151248.Ar_EST_120301b_c2769%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2370%7Cglycosylphosphatidylinositol.for.150499-151720.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.150499-151720.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.150499-151720.Ar_EST_120301b_c2370%7Cglycosylphosphatidylinositol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13294%7Cglycosylphosphatidylinositol.for.151378-152573.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.151378-152573.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.151378-152573.Ar_EST_120301b_c13294%7Cglycosylphosphatidylinositol.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:72 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:72 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:72 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:72 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:72 now processing 0 total clusters:72 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:40 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:35 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:35 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:43 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:26 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:49 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:44 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:49 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:36 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:41 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081903%7Cgb%7CEFC35733%2E1%7C.for.7123-9212.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7123-9212.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7123-9212.gi%7C284081903%7Cgb%7CEFC35733%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084058%7Cgb%7CEFC37754%2E1%7C.for.7123-8168.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7123-8168.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7123-8168.gi%7C284084058%7Cgb%7CEFC37754%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091255%7Cgb%7CEFC44903%2E1%7C.for.10243-11777.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.10243-11777.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.10243-11777.gi%7C284091255%7Cgb%7CEFC44903%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089366%7Cgb%7CEFC43024%2E1%7C.for.14773-16385.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.14773-16385.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.14773-16385.gi%7C284089366%7Cgb%7CEFC43024%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084895%7Cgb%7CEFC38583%2E1%7C.for.16319-18374.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.16319-18374.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.16319-18374.gi%7C284084895%7Cgb%7CEFC38583%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090994%7Cgb%7CEFC44643%2E1%7C.for.17715-18874.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.17715-18874.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.17715-18874.gi%7C284090994%7Cgb%7CEFC44643%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092047%7Cgb%7CEFC45691%2E1%7C.for.18398-20016.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.18398-20016.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.18398-20016.gi%7C284092047%7Cgb%7CEFC45691%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081730%7Cgb%7CEFC35619%2E1%7C.for.18434-19503.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.18434-19503.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.18434-19503.gi%7C284081730%7Cgb%7CEFC35619%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084767%7Cgb%7CEFC38456%2E1%7C.for.18383-20040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.18383-20040.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.18383-20040.gi%7C284084767%7Cgb%7CEFC38456%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086665%7Cgb%7CEFC40340%2E1%7C.for.23275-24275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.23275-24275.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.23275-24275.gi%7C284086665%7Cgb%7CEFC40340%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086663%7Cgb%7CEFC40338%2E1%7C.for.23281-24302.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.23281-24302.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.23281-24302.gi%7C284086663%7Cgb%7CEFC40338%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089940%7Cgb%7CEFC43594%2E1%7C.for.24971-27117.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.24971-27117.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.24971-27117.gi%7C284089940%7Cgb%7CEFC43594%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C1705567%7Csp%7CP53440%2E1%7CCALMF_NAEGR.for.29497-30869.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.gi%7C1705567%7Csp%7CP53440%2E1%7CCALMF_NAEGR.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097162%7Cgb%7CEFC50789%2E1%7C.for.29497-30869.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.gi%7C284097162%7Cgb%7CEFC50789%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085072%7Cgb%7CEFC38759%2E1%7C.for.29566-30728.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29566-30728.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29566-30728.gi%7C284085072%7Cgb%7CEFC38759%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C311815490%7Cemb%7CCBX84382%2E1%7C.for.29497-30869.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.gi%7C311815490%7Cemb%7CCBX84382%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C206984671%7Cemb%7CCAR80909%2E1%7C.for.29497-30869.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.gi%7C206984671%7Cemb%7CCAR80909%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C458232%7Cgb%7CAAA81897%2E1%7C.for.29497-30869.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.gi%7C458232%7Cgb%7CAAA81897%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091622%7Cgb%7CEFC45268%2E1%7C.for.30178-31220.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.30178-31220.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.30178-31220.gi%7C284091622%7Cgb%7CEFC45268%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081107%7Cgb%7CEFC35296%2E1%7C.for.44270-45567.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.44270-45567.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.44270-45567.gi%7C284081107%7Cgb%7CEFC35296%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093209%7Cgb%7CEFC46848%2E1%7C.for.49527-51284.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.49527-51284.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.49527-51284.gi%7C284093209%7Cgb%7CEFC46848%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092652%7Cgb%7CEFC46293%2E1%7C.for.66531-68353.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66531-68353.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66531-68353.gi%7C284092652%7Cgb%7CEFC46293%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084712%7Cgb%7CEFC38402%2E1%7C.for.66531-68326.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66531-68326.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66531-68326.gi%7C284084712%7Cgb%7CEFC38402%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083518%7Cgb%7CEFC37220%2E1%7C.for.66540-68347.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66540-68347.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66540-68347.gi%7C284083518%7Cgb%7CEFC37220%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095980%7Cgb%7CEFC49609%2E1%7C.for.66525-68335.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66525-68335.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66525-68335.gi%7C284095980%7Cgb%7CEFC49609%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091782%7Cgb%7CEFC45427%2E1%7C.for.66957-68161.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66957-68161.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66957-68161.gi%7C284091782%7Cgb%7CEFC45427%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085503%7Cgb%7CEFC39186%2E1%7C.for.66549-68335.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66549-68335.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66549-68335.gi%7C284085503%7Cgb%7CEFC39186%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093388%7Cgb%7CEFC47026%2E1%7C.for.67134-68098.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.67134-68098.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.67134-68098.gi%7C284093388%7Cgb%7CEFC47026%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095344%7Cgb%7CEFC48975%2E1%7C.for.66495-68329.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66495-68329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66495-68329.gi%7C284095344%7Cgb%7CEFC48975%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095754%7Cgb%7CEFC49384%2E1%7C.for.66543-68347.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66543-68347.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66543-68347.gi%7C284095754%7Cgb%7CEFC49384%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087598%7Cgb%7CEFC41267%2E1%7C.for.67616-70365.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.67616-70365.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.67616-70365.gi%7C284087598%7Cgb%7CEFC41267%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095546%7Cgb%7CEFC49176%2E1%7C.for.75463-77811.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.75463-77811.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.75463-77811.gi%7C284095546%7Cgb%7CEFC49176%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095547%7Cgb%7CEFC49177%2E1%7C.for.77195-78546.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.77195-78546.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.77195-78546.gi%7C284095547%7Cgb%7CEFC49177%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091342%7Cgb%7CEFC44989%2E1%7C.for.79831-81624.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.79831-81624.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.79831-81624.gi%7C284091342%7Cgb%7CEFC44989%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092680%7Cgb%7CEFC46321%2E1%7C.for.82221-83413.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82221-83413.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82221-83413.gi%7C284092680%7Cgb%7CEFC46321%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096588%7Cgb%7CEFC50216%2E1%7C.for.83361-84536.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.83361-84536.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.83361-84536.gi%7C284096588%7Cgb%7CEFC50216%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090846%7Cgb%7CEFC44496%2E1%7C.for.84362-86850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.84362-86850.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.84362-86850.gi%7C284090846%7Cgb%7CEFC44496%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089235%7Cgb%7CEFC42894%2E1%7C.for.88402-90836.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.88402-90836.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.88402-90836.gi%7C284089235%7Cgb%7CEFC42894%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091855%7Cgb%7CEFC45500%2E1%7C.for.91109-92648.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.91109-92648.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.91109-92648.gi%7C284091855%7Cgb%7CEFC45500%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087921%7Cgb%7CEFC41587%2E1%7C.for.96505-97541.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.96505-97541.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.96505-97541.gi%7C284087921%7Cgb%7CEFC41587%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086204%7Cgb%7CEFC39882%2E1%7C.for.100754-101769.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.100754-101769.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.100754-101769.gi%7C284086204%7Cgb%7CEFC39882%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088301%7Cgb%7CEFC41965%2E1%7C.for.104798-105909.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.104798-105909.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.104798-105909.gi%7C284088301%7Cgb%7CEFC41965%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090924%7Cgb%7CEFC44573%2E1%7C.for.108070-110047.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.108070-110047.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.108070-110047.gi%7C284090924%7Cgb%7CEFC44573%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097066%7Cgb%7CEFC50693%2E1%7C.for.111783-113222.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.111783-113222.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.111783-113222.gi%7C284097066%7Cgb%7CEFC50693%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090632%7Cgb%7CEFC44283%2E1%7C.for.112604-113928.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112604-113928.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112604-113928.gi%7C284090632%7Cgb%7CEFC44283%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083438%7Cgb%7CEFC37141%2E1%7C.for.112580-113916.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112580-113916.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112580-113916.gi%7C284083438%7Cgb%7CEFC37141%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085981%7Cgb%7CEFC39661%2E1%7C.for.112604-113919.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112604-113919.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112604-113919.gi%7C284085981%7Cgb%7CEFC39661%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089356%7Cgb%7CEFC43014%2E1%7C.for.112604-113919.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112604-113919.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112604-113919.gi%7C284089356%7Cgb%7CEFC43014%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094385%7Cgb%7CEFC48019%2E1%7C.for.113740-114929.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.113740-114929.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.113740-114929.gi%7C284094385%7Cgb%7CEFC48019%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097074%7Cgb%7CEFC50701%2E1%7C.for.115749-116791.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.115749-116791.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.115749-116791.gi%7C284097074%7Cgb%7CEFC50701%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084567%7Cgb%7CEFC38258%2E1%7C.for.115767-116794.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.115767-116794.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.115767-116794.gi%7C284084567%7Cgb%7CEFC38258%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093075%7Cgb%7CEFC46714%2E1%7C.for.130730-131943.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.130730-131943.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.130730-131943.gi%7C284093075%7Cgb%7CEFC46714%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090726%7Cgb%7CEFC44376%2E1%7C.for.139599-140995.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.139599-140995.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.139599-140995.gi%7C284090726%7Cgb%7CEFC44376%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:28 now processing 0 total clusters:28 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:28 now processing 0 total clusters:28 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.2386-3323.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.2386-3323.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.2386-3323.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.4485-6383.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.4485-6383.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.4485-6383.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.10364-11603.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.10364-11603.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.10364-11603.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.13401-14596.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.13401-14596.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.13401-14596.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.14972-16185.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.14972-16185.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.14972-16185.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.16376-18209.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.16376-18209.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.16376-18209.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.24975-26936.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.24975-26936.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.24975-26936.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.29677-30675.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.29677-30675.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.29677-30675.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.30959-31899.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.30959-31899.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.30959-31899.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.37033-43142.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.37033-43142.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.37033-43142.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.43430-44354.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.43430-44354.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.43430-44354.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.44431-46153.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.44431-46153.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.44431-46153.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.49726-51084.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.49726-51084.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.49726-51084.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.53724-54799.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.53724-54799.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.53724-54799.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.65858-68188.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.65858-68188.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.65858-68188.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.73071-73981.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.73071-73981.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.73071-73981.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.75107-78579.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.75107-78579.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.75107-78579.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.79887-81431.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.79887-81431.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.79887-81431.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.82420-83213.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.82420-83213.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.82420-83213.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.83308-86650.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.83308-86650.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.83308-86650.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.88601-90636.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.88601-90636.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.88601-90636.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.94042-95153.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.94042-95153.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.94042-95153.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.96704-97341.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.96704-97341.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.96704-97341.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.103144-104059.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.103144-104059.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.103144-104059.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.104997-105709.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.104997-105709.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.104997-105709.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.109946-111603.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.109946-111603.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.109946-111603.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.111961-114729.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.111961-114729.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.111961-114729.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.116362-117427.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.116362-117427.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.116362-117427.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.130710-132750.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.130710-132750.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.130710-132750.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.134159-136008.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.134159-136008.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.134159-136008.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.137661-141244.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.137661-141244.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.137661-141244.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.146931-148064.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.146931-148064.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.146931-148064.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.149294-151051.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.149294-151051.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.149294-151051.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.7226-9418.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.7226-9418.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.7226-9418.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.14321-15313.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.14321-15313.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.14321-15313.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.17914-20853.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.17914-20853.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.17914-20853.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.21355-22628.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.21355-22628.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.21355-22628.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.23480-24102.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.23480-24102.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.23480-24102.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.26561-29401.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.26561-29401.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.26561-29401.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.30377-31023.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.30377-31023.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.30377-31023.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/40_0.34142-36419.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/40_0.34142-36419.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/40_0.34142-36419.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/41_0.56529-59133.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/41_0.56529-59133.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/41_0.56529-59133.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/42_0.67815-70165.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/42_0.67815-70165.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/42_0.67815-70165.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/43_0.70338-72011.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/43_0.70338-72011.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/43_0.70338-72011.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/44_0.73731-74994.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/44_0.73731-74994.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/44_0.73731-74994.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/45_0.78575-79699.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/45_0.78575-79699.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/45_0.78575-79699.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/46_0.87346-88694.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/46_0.87346-88694.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/46_0.87346-88694.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/47_0.91308-92448.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/47_0.91308-92448.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/47_0.91308-92448.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/48_0.97683-99010.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/48_0.97683-99010.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/48_0.97683-99010.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/49_0.103986-105137.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/49_0.103986-105137.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/49_0.103986-105137.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/50_0.108244-109905.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/50_0.108244-109905.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/50_0.108244-109905.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/51_0.115948-116594.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/51_0.115948-116594.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/51_0.115948-116594.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/52_0.118285-119234.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/52_0.118285-119234.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/52_0.118285-119234.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/53_0.124122-129661.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/53_0.124122-129661.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/53_0.124122-129661.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/54_0.132987-134173.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/54_0.132987-134173.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/54_0.132987-134173.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/55_0.141626-144037.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/55_0.141626-144037.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/55_0.141626-144037.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/56_0.150698-152373.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/56_0.150698-152373.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/56_0.150698-152373.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C42 Length: 76433 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:3 current j:0 j_size:3 current j:1 j_size:3 current j:2 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C42.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C42.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:9 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:27 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:28 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:27 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:27 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:32 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:22 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:22 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:26 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:26 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7774%7C030702kazb008692ht.for.1-1406.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1-1406.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1-1406.Ar_EST_120301b_rep_c7774%7C030702kazb008692ht.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18851%7C---NA---.for.1-940.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1-940.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1-940.Ar_EST_120301b_c18851%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19024%7C---NA---.for.1-970.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1-970.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1-970.Ar_EST_120301b_c19024%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18770%7Cloc407698.for.1-1451.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1-1451.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1-1451.Ar_EST_120301b_rep_c18770%7Cloc407698.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4948%7Cmyosin.for.10321-12607.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.10321-12607.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.10321-12607.Ar_EST_120301b_rep_c4948%7Cmyosin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19625%7Cgtp-binding.for.8546-9603.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.8546-9603.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.8546-9603.Ar_EST_120301b_rep_c19625%7Cgtp-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5732%7Cm.for.9794-11275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.9794-11275.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.9794-11275.Ar_EST_120301b_rep_c5732%7Cm.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17320%7Cheavy.for.9960-11233.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.9960-11233.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.9960-11233.Ar_EST_120301b_rep_c17320%7Cheavy.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11257%7Cmyosin.for.8686-9748.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.8686-9748.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.8686-9748.Ar_EST_120301b_rep_c11257%7Cmyosin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14762%7Cmyosin.for.13210-14193.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.13210-14193.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.13210-14193.Ar_EST_120301b_c14762%7Cmyosin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig338%7Cmyosin.for.7890-13060.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.7890-13060.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.7890-13060.120301b_Contig338%7Cmyosin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20010%7Cpt030.for.10412-11566.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.10412-11566.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.10412-11566.Ar_EST_120301b_rep_c20010%7Cpt030.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13599%7Ceps15l1.for.8928-10003.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.8928-10003.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.8928-10003.Ar_EST_120301b_rep_c13599%7Ceps15l1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c280%7Ca.for.11708-14561.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.11708-14561.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.11708-14561.Ar_EST_120301b_c280%7Ca.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5072%7Cmyosin.for.7911-10427.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.7911-10427.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.7911-10427.Ar_EST_120301b_rep_c5072%7Cmyosin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9109%7Cinositol-pentakisphosphate.for.14767-16470.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.14767-16470.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.14767-16470.Ar_EST_120301b_c9109%7Cinositol-pentakisphosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2562%7Camino.for.16482-18275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.16482-18275.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.16482-18275.Ar_EST_120301b_c2562%7Camino.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2007%7Camino.for.15884-17370.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.15884-17370.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.15884-17370.Ar_EST_120301b_c2007%7Camino.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11326%7Chypothetical.for.16353-17413.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.16353-17413.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.16353-17413.Ar_EST_120301b_c11326%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12013%7Ccytochrome.for.19357-20363.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.19357-20363.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.19357-20363.Ar_EST_120301b_rep_c12013%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13656%7Crrp12-like.for.21547-22901.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.21547-22901.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.21547-22901.Ar_EST_120301b_c13656%7Crrp12-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8608%7Cnuc173-domain-containing.for.23818-25377.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.23818-25377.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.23818-25377.Ar_EST_120301b_c8608%7Cnuc173-domain-containing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9977%7Crrp12-like.for.24622-26076.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.24622-26076.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.24622-26076.Ar_EST_120301b_c9977%7Crrp12-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15839%7Clucilia.for.27768-29114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.27768-29114.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.27768-29114.Ar_EST_120301b_c15839%7Clucilia.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig969%7Cstructural.for.33495-35407.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.33495-35407.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.33495-35407.120301b_Contig969%7Cstructural.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8672%7Ccondensin.for.34640-36040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.34640-36040.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.34640-36040.Ar_EST_120301b_c8672%7Ccondensin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11535%7Ce3.for.39167-40542.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.39167-40542.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.39167-40542.Ar_EST_120301b_c11535%7Ce3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13262%7Cunnamed.for.39805-41097.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.39805-41097.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.39805-41097.Ar_EST_120301b_c13262%7Cunnamed.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11312%7Cpoly%28adp-ribose%29.for.40444-41924.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.40444-41924.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.40444-41924.Ar_EST_120301b_c11312%7Cpoly%28adp-ribose%29.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19596%7Chypothetical.for.42045-43366.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42045-43366.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42045-43366.Ar_EST_120301b_c19596%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7308%7Cunnamed.for.42244-43364.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42244-43364.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42244-43364.Ar_EST_120301b_rep_c7308%7Cunnamed.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig325%7Cregulatory.for.42802-44973.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42802-44973.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42802-44973.120301b_Contig325%7Cregulatory.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11048%7C26s.for.42818-43974.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42818-43974.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42818-43974.Ar_EST_120301b_rep_c11048%7C26s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7492%7Cconserved.for.45877-46991.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45877-46991.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45877-46991.Ar_EST_120301b_rep_c7492%7Cconserved.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7479%7Cagn_rnc.for.45989-47063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45989-47063.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45989-47063.Ar_EST_120301b_rep_c7479%7Cagn_rnc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7508%7Cagn_rnc.for.45857-46841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45857-46841.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45857-46841.Ar_EST_120301b_rep_c7508%7Cagn_rnc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7480%7Cagn_rnc.for.46091-47455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46091-47455.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46091-47455.Ar_EST_120301b_rep_c7480%7Cagn_rnc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7509%7Cmucin.for.45434-46641.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45434-46641.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45434-46641.Ar_EST_120301b_rep_c7509%7Cmucin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig982%7Cras-related.for.45341-46536.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45341-46536.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45341-46536.120301b_Contig982%7Cras-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig343%7Cson.for.45134-47099.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45134-47099.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45134-47099.120301b_Contig343%7Cson.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5597%7Ccre-clec-202.for.45109-46960.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45109-46960.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45109-46960.Ar_EST_120301b_rep_c5597%7Ccre-clec-202.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7743%7Ccapg.for.45109-46400.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45109-46400.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45109-46400.Ar_EST_120301b_rep_c7743%7Ccapg.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7494%7Chypothetical.for.46415-47555.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46415-47555.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46415-47555.Ar_EST_120301b_rep_c7494%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16710%7Cascaris.for.46415-47537.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46415-47537.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46415-47537.Ar_EST_120301b_rep_c16710%7Cascaris.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19414%7Clusgc1ng-rp-234_a03_02apr2007_031.for.46639-47581.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46639-47581.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46639-47581.Ar_EST_120301b_rep_c19414%7Clusgc1ng-rp-234_a03_02apr2007_031.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7511%7C454.for.45483-46453.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45483-46453.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45483-46453.Ar_EST_120301b_rep_c7511%7C454.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6388%7Cglycoside.for.45638-46638.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45638-46638.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45638-46638.Ar_EST_120301b_rep_c6388%7Cglycoside.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19937%7Cseverin.for.45116-46100.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45116-46100.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45116-46100.Ar_EST_120301b_rep_c19937%7Cseverin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7495%7Cagn_rnc.for.46158-47433.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46158-47433.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46158-47433.Ar_EST_120301b_rep_c7495%7Cagn_rnc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7483%7C---NA---.for.46372-47433.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46372-47433.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46372-47433.Ar_EST_120301b_rep_c7483%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5806%7Cagn_rnc.for.45932-46941.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45932-46941.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45932-46941.Ar_EST_120301b_rep_c5806%7Cagn_rnc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7496%7Cc08024b04sk.for.45501-46672.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45501-46672.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45501-46672.Ar_EST_120301b_rep_c7496%7Cc08024b04sk.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16396%7Cglycoprotein.for.45482-46646.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45482-46646.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45482-46646.Ar_EST_120301b_rep_c16396%7Cglycoprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13573%7Cconserved.for.45147-46240.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45147-46240.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45147-46240.Ar_EST_120301b_rep_c13573%7Cconserved.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20339%7Cprotein.for.45144-46424.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45144-46424.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45144-46424.Ar_EST_120301b_rep_c20339%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig316%7Cpf11-1.for.45115-47057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45115-47057.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45115-47057.120301b_Contig316%7Cpf11-1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7487%7Cagn_rnc.for.46182-47595.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46182-47595.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46182-47595.Ar_EST_120301b_rep_c7487%7Cagn_rnc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6183%7Cpf11-1.for.45491-47522.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45491-47522.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45491-47522.Ar_EST_120301b_rep_c6183%7Cpf11-1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14545%7Chypothetical.for.45965-47068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45965-47068.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45965-47068.Ar_EST_120301b_rep_c14545%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1387%7Cpf11-1.for.45128-47072.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45128-47072.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45128-47072.120301b_Contig1387%7Cpf11-1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7470%7Cdc961434.for.45674-46577.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45674-46577.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45674-46577.Ar_EST_120301b_rep_c7470%7Cdc961434.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14022%7Chypothetical.for.46393-47555.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46393-47555.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46393-47555.Ar_EST_120301b_rep_c14022%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7500%7Cagn_rnc.for.45877-46957.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45877-46957.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45877-46957.Ar_EST_120301b_rep_c7500%7Cagn_rnc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7489%7Cagn_rnc.for.45655-46926.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45655-46926.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45655-46926.Ar_EST_120301b_rep_c7489%7Cagn_rnc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7476%7Cagn_rnc.for.46159-47569.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46159-47569.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46159-47569.Ar_EST_120301b_rep_c7476%7Cagn_rnc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7112%7Clikely.for.45218-47099.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45218-47099.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45218-47099.Ar_EST_120301b_rep_c7112%7Clikely.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7490%7Cpf11-1.for.45848-47172.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45848-47172.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45848-47172.Ar_EST_120301b_rep_c7490%7Cpf11-1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7505%7Cserine.for.45942-47187.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45942-47187.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45942-47187.Ar_EST_120301b_rep_c7505%7Cserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7044%7Cbw637335.for.45144-46373.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45144-46373.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45144-46373.Ar_EST_120301b_rep_c7044%7Cbw637335.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4836%7Cpf11-1.for.45128-47522.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45128-47522.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45128-47522.Ar_EST_120301b_rep_c4836%7Cpf11-1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6893%7Cpf11-1.for.45110-47063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45110-47063.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45110-47063.Ar_EST_120301b_rep_c6893%7Cpf11-1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17766%7C60s.for.45811-47072.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45811-47072.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45811-47072.Ar_EST_120301b_rep_c17766%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4017%7Ccre-clec-202.for.45109-46943.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45109-46943.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45109-46943.Ar_EST_120301b_rep_c4017%7Ccre-clec-202.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7092%7Chypothetical.for.45110-46243.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45110-46243.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45110-46243.Ar_EST_120301b_rep_c7092%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20418%7Cdc981051.for.45137-46306.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45137-46306.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45137-46306.Ar_EST_120301b_rep_c20418%7Cdc981051.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4416%7Cmannose-1-phosphate.for.48178-50188.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.48178-50188.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.48178-50188.Ar_EST_120301b_rep_c4416%7Cmannose-1-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10906%7Cset.for.49734-51197.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.49734-51197.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.49734-51197.Ar_EST_120301b_c10906%7Cset.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16929%7C---NA---.for.51104-52524.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.51104-52524.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.51104-52524.Ar_EST_120301b_c16929%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1490%7Cagencourt_54728430.for.51937-53332.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.51937-53332.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.51937-53332.Ar_EST_120301b_c1490%7Cagencourt_54728430.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c990%7Ccaau.for.53479-54807.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.53479-54807.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.53479-54807.Ar_EST_120301b_c990%7Ccaau.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1347%7C---NA---.for.53147-54553.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.53147-54553.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.53147-54553.120301b_Contig1347%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5238%7C---NA---.for.53147-54491.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.53147-54491.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.53147-54491.Ar_EST_120301b_rep_c5238%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1370%7Cubiquitin.for.53182-54304.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.53182-54304.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.53182-54304.120301b_Contig1370%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c572%7Cfra0980.for.54258-55665.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.54258-55665.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.54258-55665.Ar_EST_120301b_c572%7Cfra0980.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c824%7C---NA---.for.54999-56346.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.54999-56346.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.54999-56346.Ar_EST_120301b_c824%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14096%7Cprotein.for.59864-61124.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59864-61124.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59864-61124.Ar_EST_120301b_c14096%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16701%7Celongation.for.63503-64957.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.63503-64957.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.63503-64957.Ar_EST_120301b_c16701%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14311%7Cmajor.for.65108-66195.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.65108-66195.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.65108-66195.Ar_EST_120301b_c14311%7Cmajor.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10866%7Cpiggybac.for.67346-69111.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.67346-69111.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.67346-69111.Ar_EST_120301b_c10866%7Cpiggybac.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8355%7Cpiggybac.for.67322-68937.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.67322-68937.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.67322-68937.Ar_EST_120301b_c8355%7Cpiggybac.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9544%7Cmlp2991.for.72162-73645.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.72162-73645.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.72162-73645.Ar_EST_120301b_c9544%7Cmlp2991.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10994%7Cct751907.for.75607-76433.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.75607-76433.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.75607-76433.Ar_EST_120301b_c10994%7Cct751907.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:33 now processing 0 total clusters:33 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:33 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 ...processing 0 of 22 ...processing 1 of 22 ...processing 2 of 22 ...processing 3 of 22 ...processing 4 of 22 ...processing 5 of 22 ...processing 6 of 22 ...processing 7 of 22 ...processing 8 of 22 ...processing 9 of 22 ...processing 10 of 22 ...processing 11 of 22 ...processing 12 of 22 ...processing 13 of 22 ...processing 14 of 22 ...processing 15 of 22 ...processing 16 of 22 ...processing 17 of 22 ...processing 18 of 22 ...processing 19 of 22 ...processing 20 of 22 ...processing 21 of 22 total clusters:33 now processing 0 total clusters:33 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:22 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:11 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:15 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:20 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:24 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:20 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:26 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:15 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:12 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:14 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084885%7Cgb%7CEFC38573%2E1%7C.for.1773-3681.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1773-3681.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1773-3681.gi%7C284084885%7Cgb%7CEFC38573%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085553%7Cgb%7CEFC39236%2E1%7C.for.7920-14466.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.7920-14466.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.7920-14466.gi%7C284085553%7Cgb%7CEFC39236%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094451%7Cgb%7CEFC48085%2E1%7C.for.7932-14460.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.7932-14460.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.7932-14460.gi%7C284094451%7Cgb%7CEFC48085%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084972%7Cgb%7CEFC38659%2E1%7C.for.16062-18301.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.16062-18301.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.16062-18301.gi%7C284084972%7Cgb%7CEFC38659%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089951%7Cgb%7CEFC43605%2E1%7C.for.16209-18235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.16209-18235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.16209-18235.gi%7C284089951%7Cgb%7CEFC43605%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096115%7Cgb%7CEFC49744%2E1%7C.for.17570-19460.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.17570-19460.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.17570-19460.gi%7C284096115%7Cgb%7CEFC49744%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096480%7Cgb%7CEFC50108%2E1%7C.for.19232-20352.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.19232-20352.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.19232-20352.gi%7C284096480%7Cgb%7CEFC50108%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096114%7Cgb%7CEFC49743%2E1%7C.for.31950-36420.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.31950-36420.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.31950-36420.gi%7C284096114%7Cgb%7CEFC49743%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084943%7Cgb%7CEFC38631%2E1%7C.for.31962-36417.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.31962-36417.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.31962-36417.gi%7C284084943%7Cgb%7CEFC38631%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091903%7Cgb%7CEFC45547%2E1%7C.for.37513-38519.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.37513-38519.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.37513-38519.gi%7C284091903%7Cgb%7CEFC45547%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096119%7Cgb%7CEFC49748%2E1%7C.for.40644-42565.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.40644-42565.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.40644-42565.gi%7C284096119%7Cgb%7CEFC49748%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092250%7Cgb%7CEFC45893%2E1%7C.for.43363-44942.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43363-44942.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43363-44942.gi%7C284092250%7Cgb%7CEFC45893%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082802%7Cgb%7CEFC36513%2E1%7C.for.43363-44861.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43363-44861.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43363-44861.gi%7C284082802%7Cgb%7CEFC36513%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083285%7Cgb%7CEFC36990%2E1%7C.for.43231-44915.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43231-44915.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43231-44915.gi%7C284083285%7Cgb%7CEFC36990%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086815%7Cgb%7CEFC40489%2E1%7C.for.42949-44954.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42949-44954.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42949-44954.gi%7C284086815%7Cgb%7CEFC40489%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095107%7Cgb%7CEFC48739%2E1%7C.for.43381-44933.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43381-44933.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43381-44933.gi%7C284095107%7Cgb%7CEFC48739%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092145%7Cgb%7CEFC45788%2E1%7C.for.43324-44894.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43324-44894.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43324-44894.gi%7C284092145%7Cgb%7CEFC45788%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086643%7Cgb%7CEFC40318%2E1%7C.for.43342-44903.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43342-44903.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43342-44903.gi%7C284086643%7Cgb%7CEFC40318%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090736%7Cgb%7CEFC44386%2E1%7C.for.43339-44951.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43339-44951.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43339-44951.gi%7C284090736%7Cgb%7CEFC44386%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089920%7Cgb%7CEFC43575%2E1%7C.for.43186-44918.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43186-44918.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43186-44918.gi%7C284089920%7Cgb%7CEFC43575%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089547%7Cgb%7CEFC43204%2E1%7C.for.43201-44921.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43201-44921.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43201-44921.gi%7C284089547%7Cgb%7CEFC43204%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084479%7Cgb%7CEFC38171%2E1%7C.for.48200-50161.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.48200-50161.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.48200-50161.gi%7C284084479%7Cgb%7CEFC38171%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097121%7Cgb%7CEFC50748%2E1%7C.for.48200-50161.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.48200-50161.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.48200-50161.gi%7C284097121%7Cgb%7CEFC50748%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095513%7Cgb%7CEFC49143%2E1%7C.for.59486-60759.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59486-60759.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59486-60759.gi%7C284095513%7Cgb%7CEFC49143%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091174%7Cgb%7CEFC44822%2E1%7C.for.59498-60747.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59498-60747.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59498-60747.gi%7C284091174%7Cgb%7CEFC44822%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096632%7Cgb%7CEFC50259%2E1%7C.for.59504-60747.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59504-60747.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59504-60747.gi%7C284096632%7Cgb%7CEFC50259%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096631%7Cgb%7CEFC50258%2E1%7C.for.56274-60438.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.56274-60438.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.56274-60438.gi%7C284096631%7Cgb%7CEFC50258%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091239%7Cgb%7CEFC44887%2E1%7C.for.59486-60744.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59486-60744.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59486-60744.gi%7C284091239%7Cgb%7CEFC44887%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087686%7Cgb%7CEFC41354%2E1%7C.for.56064-60891.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.56064-60891.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.56064-60891.gi%7C284087686%7Cgb%7CEFC41354%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089822%7Cgb%7CEFC43477%2E1%7C.for.62094-65123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.62094-65123.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.62094-65123.gi%7C284089822%7Cgb%7CEFC43477%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082936%7Cgb%7CEFC36645%2E1%7C.for.64707-66232.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.64707-66232.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.64707-66232.gi%7C284082936%7Cgb%7CEFC36645%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:11 now processing 0 total clusters:11 now processing 0 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:9 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:16 now processing 0 total clusters:16 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 ...processing 0 of 2 ...processing 1 of 2 total clusters:16 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 ...processing 0 of 19 ...processing 1 of 19 ...processing 2 of 19 ...processing 3 of 19 ...processing 4 of 19 ...processing 5 of 19 ...processing 6 of 19 ...processing 7 of 19 ...processing 8 of 19 ...processing 9 of 19 ...processing 10 of 19 ...processing 11 of 19 ...processing 12 of 19 ...processing 13 of 19 ...processing 14 of 19 ...processing 15 of 19 ...processing 16 of 19 ...processing 17 of 19 ...processing 18 of 19 total clusters:16 now processing 0 total clusters:16 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.274-1263.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.274-1263.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.274-1263.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.8848-9548.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.8848-9548.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.8848-9548.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.14966-16270.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.14966-16270.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.14966-16270.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.21746-22701.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.21746-22701.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.21746-22701.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.24017-25876.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.24017-25876.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.24017-25876.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.32149-36220.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.32149-36220.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.32149-36220.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.39366-40342.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.39366-40342.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.39366-40342.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.43001-44777.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.43001-44777.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.43001-44777.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.45867-47168.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.45867-47168.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.45867-47168.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.48367-49988.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.48367-49988.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.48367-49988.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.51249-53132.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.51249-53132.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.51249-53132.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.56263-60924.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.56263-60924.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.56263-60924.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.67521-68911.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.67521-68911.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.67521-68911.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.72361-73478.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.72361-73478.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.72361-73478.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.90-631.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.90-631.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.90-631.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.8089-14361.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.8089-14361.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.8089-14361.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.16083-19260.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.16083-19260.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.16083-19260.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.19431-20152.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.19431-20152.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.19431-20152.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.27967-28914.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.27967-28914.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.27967-28914.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.40004-43176.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.40004-43176.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.40004-43176.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.45295-47426.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.45295-47426.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.45295-47426.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.49931-50997.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.49931-50997.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.49931-50997.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.53346-56146.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.53346-56146.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.53346-56146.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.62293-66032.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.62293-66032.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.62293-66032.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C43 Length: 92164 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:2 current j:0 j_size:2 current j:1 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C43.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C43.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:5 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17092%7Cfp188883.for.3526-4473.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.3526-4473.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.3526-4473.Ar_EST_120301b_c17092%7Cfp188883.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13677%7Cccab.for.5252-6612.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.5252-6612.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.5252-6612.Ar_EST_120301b_c13677%7Cccab.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14518%7Cct749901.for.7990-9313.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.7990-9313.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.7990-9313.Ar_EST_120301b_c14518%7Cct749901.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9288%7Cam569745.for.7381-8837.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.7381-8837.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.7381-8837.Ar_EST_120301b_c9288%7Cam569745.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4141%7Cand.for.9566-11196.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.9566-11196.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.9566-11196.Ar_EST_120301b_rep_c4141%7Cand.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6063%7Cand.for.9750-11028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.9750-11028.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.9750-11028.Ar_EST_120301b_rep_c6063%7Cand.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15157%7Cfs534783.for.12578-13795.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.12578-13795.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.12578-13795.Ar_EST_120301b_c15157%7Cfs534783.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17200%7Ctetratricopeptide.for.13047-14232.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.13047-14232.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.13047-14232.Ar_EST_120301b_c17200%7Ctetratricopeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13584%7Cpinus.for.14744-15962.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.14744-15962.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.14744-15962.Ar_EST_120301b_c13584%7Cpinus.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3070%7C---NA---.for.14732-16014.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.14732-16014.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.14732-16014.Ar_EST_120301b_c3070%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9766%7Cperoxiredoxin.for.17496-18964.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.17496-18964.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.17496-18964.Ar_EST_120301b_c9766%7Cperoxiredoxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10584%7Ccytochrome.for.18605-19915.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.18605-19915.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.18605-19915.Ar_EST_120301b_c10584%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig463%7Calcohol.for.19343-21211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.19343-21211.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.19343-21211.120301b_Contig463%7Calcohol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4099%7Calcohol.for.19322-21212.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.19322-21212.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.19322-21212.Ar_EST_120301b_rep_c4099%7Calcohol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18166%7Ccopper.for.23025-24216.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.23025-24216.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.23025-24216.Ar_EST_120301b_c18166%7Ccopper.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9326%7Cabc.for.25002-26391.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.25002-26391.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.25002-26391.Ar_EST_120301b_c9326%7Cabc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12338%7Cabc.for.26196-27884.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26196-27884.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26196-27884.Ar_EST_120301b_c12338%7Cabc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7977%7Cprotein.for.28339-30585.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.28339-30585.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.28339-30585.Ar_EST_120301b_c7977%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13552%7Ccytochrome.for.30161-31786.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.30161-31786.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.30161-31786.Ar_EST_120301b_c13552%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1677%7Crhogef.for.33450-34814.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.33450-34814.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.33450-34814.Ar_EST_120301b_c1677%7Crhogef.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20340%7Cmembrane.for.32541-33655.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.32541-33655.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.32541-33655.Ar_EST_120301b_rep_c20340%7Cmembrane.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1340%7Crhogef.for.31943-34641.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.31943-34641.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.31943-34641.120301b_Contig1340%7Crhogef.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3406%7Cnucleoside-diphosphate-sugar.for.35037-36828.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.35037-36828.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.35037-36828.Ar_EST_120301b_c3406%7Cnucleoside-diphosphate-sugar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8532%7Cau287079.for.37076-38097.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.37076-38097.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.37076-38097.Ar_EST_120301b_c8532%7Cau287079.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12209%7Cacetyl-.for.38502-39630.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.38502-39630.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.38502-39630.Ar_EST_120301b_c12209%7Cacetyl-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18018%7C---NA---.for.39325-40402.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.39325-40402.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.39325-40402.Ar_EST_120301b_c18018%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12991%7Calpha-tubulin.for.40091-41311.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.40091-41311.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.40091-41311.Ar_EST_120301b_rep_c12991%7Calpha-tubulin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17425%7Crapamycin.for.44284-45658.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.44284-45658.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.44284-45658.Ar_EST_120301b_rep_c17425%7Crapamycin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16058%7Cserine.for.45035-46459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.45035-46459.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.45035-46459.Ar_EST_120301b_c16058%7Cserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2918%7Cphosphatidylinositol.for.46079-47673.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.46079-47673.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.46079-47673.Ar_EST_120301b_c2918%7Cphosphatidylinositol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18515%7Cprotein.for.47799-49079.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.47799-49079.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.47799-49079.Ar_EST_120301b_c18515%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12339%7Cphosphatidylinositol.for.48446-49831.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.48446-49831.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.48446-49831.Ar_EST_120301b_c12339%7Cphosphatidylinositol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10083%7Ctor.for.50097-52131.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.50097-52131.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.50097-52131.Ar_EST_120301b_c10083%7Ctor.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17125%7Cfk506.for.51445-52972.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.51445-52972.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.51445-52972.Ar_EST_120301b_c17125%7Cfk506.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c609%7Ctranslation.for.55264-57136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.55264-57136.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.55264-57136.Ar_EST_120301b_c609%7Ctranslation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16114%7Cpentein-type.for.56590-57910.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.56590-57910.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.56590-57910.Ar_EST_120301b_c16114%7Cpentein-type.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15590%7Cggdef.for.59052-60296.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.59052-60296.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.59052-60296.Ar_EST_120301b_c15590%7Cggdef.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11620%7Chypothetical.for.59484-60929.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.59484-60929.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.59484-60929.Ar_EST_120301b_c11620%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16515%7C---NA---.for.60825-62078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.60825-62078.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.60825-62078.Ar_EST_120301b_c16515%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4560%7Cmember.for.62938-64381.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.62938-64381.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.62938-64381.Ar_EST_120301b_rep_c4560%7Cmember.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20266%7Cdrug.for.61501-63752.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.61501-63752.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.61501-63752.Ar_EST_120301b_c20266%7Cdrug.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5804%7Cbeta-arrestin.for.64403-66155.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.64403-66155.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.64403-66155.Ar_EST_120301b_rep_c5804%7Cbeta-arrestin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6687%7Cpredicted.for.64370-65546.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.64370-65546.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.64370-65546.Ar_EST_120301b_rep_c6687%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4372%7Cbeta-arrestin.for.64168-66155.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.64168-66155.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.64168-66155.Ar_EST_120301b_rep_c4372%7Cbeta-arrestin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13910%7C---NA---.for.64304-65220.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.64304-65220.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.64304-65220.Ar_EST_120301b_rep_c13910%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2549%7Cthioredoxin.for.66566-68310.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.66566-68310.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.66566-68310.Ar_EST_120301b_c2549%7Cthioredoxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15315%7Crna-binding.for.67791-68961.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.67791-68961.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.67791-68961.Ar_EST_120301b_c15315%7Crna-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2976%7Crna-binding.for.68438-70469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.68438-70469.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.68438-70469.Ar_EST_120301b_c2976%7Crna-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3634%7Czz-type.for.70147-71611.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.70147-71611.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.70147-71611.Ar_EST_120301b_c3634%7Czz-type.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2887%7Cubiquitin-associated.for.70584-72038.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.70584-72038.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.70584-72038.Ar_EST_120301b_c2887%7Cubiquitin-associated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig323%7Ctubulin.for.73278-75377.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73278-75377.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73278-75377.120301b_Contig323%7Ctubulin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15599%7Cpopulus.for.74929-76348.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.74929-76348.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.74929-76348.Ar_EST_120301b_c15599%7Cpopulus.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7031%7Cheat.for.76336-77895.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.76336-77895.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.76336-77895.Ar_EST_120301b_rep_c7031%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16987%7Cflagellar.for.77326-78609.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.77326-78609.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.77326-78609.Ar_EST_120301b_c16987%7Cflagellar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9635%7Cgdp-man%3Aman.for.79655-81480.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.79655-81480.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.79655-81480.Ar_EST_120301b_c9635%7Cgdp-man%3Aman.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19551%7Caspargine-linked.for.80083-81464.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.80083-81464.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.80083-81464.Ar_EST_120301b_c19551%7Caspargine-linked.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1696%7Ctrna.for.81261-82761.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.81261-82761.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.81261-82761.Ar_EST_120301b_c1696%7Ctrna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7744%7Cprotein.for.81867-83835.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.81867-83835.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.81867-83835.Ar_EST_120301b_c7744%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18655%7Cmethyltransferase.for.82807-84315.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.82807-84315.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.82807-84315.Ar_EST_120301b_c18655%7Cmethyltransferase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19904%7Cmethyltransferase.for.82712-84249.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.82712-84249.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.82712-84249.Ar_EST_120301b_c19904%7Cmethyltransferase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig233%7Cphospholipase.for.86209-88251.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.86209-88251.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.86209-88251.120301b_Contig233%7Cphospholipase.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:40 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:38 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:38 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:38 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:30 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:49 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:38 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:31 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:40 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:41 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:36 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097056%7Cgb%7CEFC50683%2E1%7C.for.9746-11154.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.9746-11154.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.9746-11154.gi%7C284097056%7Cgb%7CEFC50683%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090825%7Cgb%7CEFC44475%2E1%7C.for.21982-23057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.21982-23057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.21982-23057.gi%7C284090825%7Cgb%7CEFC44475%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084884%7Cgb%7CEFC38572%2E1%7C.for.25245-27535.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.25245-27535.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.25245-27535.gi%7C284084884%7Cgb%7CEFC38572%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090115%7Cgb%7CEFC43768%2E1%7C.for.25005-27712.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.25005-27712.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.25005-27712.gi%7C284090115%7Cgb%7CEFC43768%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085735%7Cgb%7CEFC39417%2E1%7C.for.24999-27664.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.24999-27664.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.24999-27664.gi%7C284085735%7Cgb%7CEFC39417%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096910%7Cgb%7CEFC50537%2E1%7C.for.26056-27625.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26056-27625.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26056-27625.gi%7C284096910%7Cgb%7CEFC50537%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096078%7Cgb%7CEFC49707%2E1%7C.for.26047-27437.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26047-27437.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26047-27437.gi%7C284096078%7Cgb%7CEFC49707%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094270%7Cgb%7CEFC47905%2E1%7C.for.26059-27559.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26059-27559.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26059-27559.gi%7C284094270%7Cgb%7CEFC47905%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083704%7Cgb%7CEFC37404%2E1%7C.for.24999-27673.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.24999-27673.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.24999-27673.gi%7C284083704%7Cgb%7CEFC37404%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094259%7Cgb%7CEFC47894%2E1%7C.for.24999-27682.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.24999-27682.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.24999-27682.gi%7C284094259%7Cgb%7CEFC47894%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094721%7Cgb%7CEFC48354%2E1%7C.for.26065-27559.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26065-27559.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26065-27559.gi%7C284094721%7Cgb%7CEFC48354%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082506%7Cgb%7CEFC36223%2E1%7C.for.28324-29819.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.28324-29819.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.28324-29819.gi%7C284082506%7Cgb%7CEFC36223%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089855%7Cgb%7CEFC43510%2E1%7C.for.28264-30386.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.28264-30386.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.28264-30386.gi%7C284089855%7Cgb%7CEFC43510%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081402%7Cgb%7CEFC35430%2E1%7C.for.42347-43347.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.42347-43347.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.42347-43347.gi%7C284081402%7Cgb%7CEFC35430%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096798%7Cgb%7CEFC50425%2E1%7C.for.43208-44964.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.43208-44964.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.43208-44964.gi%7C284096798%7Cgb%7CEFC50425%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088248%7Cgb%7CEFC41913%2E1%7C.for.44214-52634.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.44214-52634.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.44214-52634.gi%7C284088248%7Cgb%7CEFC41913%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084309%7Cgb%7CEFC38003%2E1%7C.for.55818-57080.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.55818-57080.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.55818-57080.gi%7C284084309%7Cgb%7CEFC38003%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084448%7Cgb%7CEFC38141%2E1%7C.for.55818-57092.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.55818-57092.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.55818-57092.gi%7C284084448%7Cgb%7CEFC38141%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092108%7Cgb%7CEFC45751%2E1%7C.for.56577-58330.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.56577-58330.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.56577-58330.gi%7C284092108%7Cgb%7CEFC45751%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088691%7Cgb%7CEFC42353%2E1%7C.for.57943-58856.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.57943-58856.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.57943-58856.gi%7C284088691%7Cgb%7CEFC42353%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091203%7Cgb%7CEFC44851%2E1%7C.for.61596-63641.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.61596-63641.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.61596-63641.gi%7C284091203%7Cgb%7CEFC44851%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083474%7Cgb%7CEFC37177%2E1%7C.for.61605-63584.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.61605-63584.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.61605-63584.gi%7C284083474%7Cgb%7CEFC37177%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083969%7Cgb%7CEFC37667%2E1%7C.for.61889-63587.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.61889-63587.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.61889-63587.gi%7C284083969%7Cgb%7CEFC37667%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096866%7Cgb%7CEFC50493%2E1%7C.for.63133-64462.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63133-64462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63133-64462.gi%7C284096866%7Cgb%7CEFC50493%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093204%7Cgb%7CEFC46843%2E1%7C.for.63169-64438.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63169-64438.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63169-64438.gi%7C284093204%7Cgb%7CEFC46843%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095151%7Cgb%7CEFC48783%2E1%7C.for.63118-64262.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63118-64262.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63118-64262.gi%7C284095151%7Cgb%7CEFC48783%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095231%7Cgb%7CEFC48862%2E1%7C.for.62968-64462.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.62968-64462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.62968-64462.gi%7C284095231%7Cgb%7CEFC48862%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095060%7Cgb%7CEFC48692%2E1%7C.for.63139-64462.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63139-64462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63139-64462.gi%7C284095060%7Cgb%7CEFC48692%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085175%7Cgb%7CEFC38861%2E1%7C.for.63148-64262.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63148-64262.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63148-64262.gi%7C284085175%7Cgb%7CEFC38861%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081592%7Cgb%7CEFC35538%2E1%7C.for.63118-64214.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63118-64214.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63118-64214.gi%7C284081592%7Cgb%7CEFC35538%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087063%7Cgb%7CEFC40735%2E1%7C.for.63145-64462.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63145-64462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63145-64462.gi%7C284087063%7Cgb%7CEFC40735%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089507%7Cgb%7CEFC43164%2E1%7C.for.63169-64262.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63169-64262.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63169-64262.gi%7C284089507%7Cgb%7CEFC43164%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092547%7Cgb%7CEFC46189%2E1%7C.for.67167-68206.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.67167-68206.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.67167-68206.gi%7C284092547%7Cgb%7CEFC46189%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093081%7Cgb%7CEFC46720%2E1%7C.for.70141-71237.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.70141-71237.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.70141-71237.gi%7C284093081%7Cgb%7CEFC46720%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091177%7Cgb%7CEFC44825%2E1%7C.for.70081-72452.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.70081-72452.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.70081-72452.gi%7C284091177%7Cgb%7CEFC44825%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096878%7Cgb%7CEFC50505%2E1%7C.for.72364-73424.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.72364-73424.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.72364-73424.gi%7C284096878%7Cgb%7CEFC50505%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C464854%7Csp%7CP34108%2E1%7CTBB_NAEGR.for.73326-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.gi%7C464854%7Csp%7CP34108%2E1%7CTBB_NAEGR.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086940%7Cgb%7CEFC40613%2E1%7C.for.73335-75325.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73335-75325.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73335-75325.gi%7C284086940%7Cgb%7CEFC40613%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C9737%7Cemb%7CCAA78362%2E1%7C.for.73326-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.gi%7C9737%7Cemb%7CCAA78362%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086828%7Cgb%7CEFC40502%2E1%7C.for.73287-74890.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73287-74890.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73287-74890.gi%7C284086828%7Cgb%7CEFC40502%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082800%7Cgb%7CEFC36511%2E1%7C.for.73326-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.gi%7C284082800%7Cgb%7CEFC36511%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086082%7Cgb%7CEFC39761%2E1%7C.for.73326-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.gi%7C284086082%7Cgb%7CEFC39761%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091464%7Cgb%7CEFC45110%2E1%7C.for.73278-75409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73278-75409.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73278-75409.gi%7C284091464%7Cgb%7CEFC45110%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084286%7Cgb%7CEFC37980%2E1%7C.for.73347-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73347-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73347-75412.gi%7C284084286%7Cgb%7CEFC37980%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C15082214%7Cgb%7CAAK84066%2E1%7CAF401641_1.for.74148-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.74148-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.74148-75412.gi%7C15082214%7Cgb%7CAAK84066%2E1%7CAF401641_1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C829213%7Cemb%7CCAA56940%2E1%7C.for.73326-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.gi%7C829213%7Cemb%7CCAA56940%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083707%7Cgb%7CEFC37407%2E1%7C.for.73320-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73320-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73320-75412.gi%7C284083707%7Cgb%7CEFC37407%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083068%7Cgb%7CEFC36775%2E1%7C.for.73326-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.gi%7C284083068%7Cgb%7CEFC36775%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084695%7Cgb%7CEFC38385%2E1%7C.for.73320-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73320-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73320-75412.gi%7C284084695%7Cgb%7CEFC38385%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094548%7Cgb%7CEFC48182%2E1%7C.for.77239-78596.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.77239-78596.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.77239-78596.gi%7C284094548%7Cgb%7CEFC48182%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094208%7Cgb%7CEFC47843%2E1%7C.for.79553-81709.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.79553-81709.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.79553-81709.gi%7C284094208%7Cgb%7CEFC47843%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:14 now processing 0 total clusters:14 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:12 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:27 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:27 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:27 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.7580-9113.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.7580-9113.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.7580-9113.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.17695-18764.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.17695-18764.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.17695-18764.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.35236-36628.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.35236-36628.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.35236-36628.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.40264-41111.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.40264-41111.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.40264-41111.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.43407-44764.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.43407-44764.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.43407-44764.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.56776-58130.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.56776-58130.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.56776-58130.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.61024-63552.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.61024-63552.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.61024-63552.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.70280-72252.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.70280-72252.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.70280-72252.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.3725-4273.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.3725-4273.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.3725-4273.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.5451-6412.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.5451-6412.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.5451-6412.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.9846-10954.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.9846-10954.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.9846-10954.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.12777-14032.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.12777-14032.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.12777-14032.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.14931-15844.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.14931-15844.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.14931-15844.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.18804-21022.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.18804-21022.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.18804-21022.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.23224-24016.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.23224-24016.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.23224-24016.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.25198-27684.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.25198-27684.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.25198-27684.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.28463-31586.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.28463-31586.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.28463-31586.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.32142-34623.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.32142-34623.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.32142-34623.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.44413-52772.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.44413-52772.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.44413-52772.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.59251-60729.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.59251-60729.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.59251-60729.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.63132-64321.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.63132-64321.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.63132-64321.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.64367-65955.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.64367-65955.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.64367-65955.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.66765-70269.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.66765-70269.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.66765-70269.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.72563-73227.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.72563-73227.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.72563-73227.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.73477-76148.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.73477-76148.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.73477-76148.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.77438-78411.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.77438-78411.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.77438-78411.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.79752-84119.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.79752-84119.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.79752-84119.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.86408-88051.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.86408-88051.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.86408-88051.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output Maker is now finished!!! [saneash at milou2 re-run0]$ From carsonhh at gmail.com Fri Jan 17 11:55:38 2014 From: carsonhh at gmail.com (Carson Holt) Date: Fri, 17 Jan 2014 10:55:38 -0700 Subject: [maker-devel] Problem with re-annotation In-Reply-To: References: Message-ID: Could you send me these two files. I put the full path below based on your STDERR report. Also this log was from the original run having the issue, and not a new repeated attempt at that one, correct? First file ?> /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_re dundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_1 30708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1/theVoid.AR_HYBRID_130 113_TINTIN_EF2ON_C1/AR_HYBRID_130113_TINTIN_EF2ON_C1.abinit_masked.0.run0%2E hmm.snap Second file ?> /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_re dundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_1 30708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1/AR_HYBRID_130113_TINT IN_EF2ON_C1.gff Thanks, Carson From: Sanea Sheikh Date: Thursday, January 16, 2014 at 3:52 AM To: , Carson Holt Subject: Fwd: [maker-devel] Problem with re-annotation Hello Carson Here it is. Sanea On Tue, Jan 14, 2014 at 1:39 AM, Carson Holt wrote: > Hi Sanea, > > There are no snap calls in your results. It?s as if SNAP never even ran. Did > you capture STDERR from your second run? If so can you send it to me. I just > want to see if it even shows SNAP as having run in the progress reports. > > Thanks, > Carson > > From: Sanea Sheikh > Date: Monday, January 13, 2014 at 2:17 AM > To: > Subject: [maker-devel] Problem with re-annotation > > Hello > > I am using Maker to annotate a genome for which I only have EST data and some > protein data. I ran Maker once using this EST and protein data (est2genome=1, > protein2genome=1). I had the Maker output. I combined all the GFF files for > all the contigs. I used the combined GFF file to train SNAP which gave me a > .hmm file. Now I modified the Maker opts control file. I provided the hmm file > in snap_hmm. I set est2genome=0 and protein2genome=0. I ran Maker again > assuming that now I have trained the gene predictor and I would have better > annotations. But now the output file that I get does not have Maker > annotation. I have attached the control files and the output file for the > re-run so you can have a look and let me know what I am doing wrong in order > to re-annotate the genome using the output from the previous run. > > Sanea > _______________________________________________ maker-devel mailing list > maker-devel at box290.bluehost.comhttp://box290.bluehost.com/mailman/listinfo/mak > er-devel_yandell-lab.org -------------- next part -------------- An HTML attachment was scrubbed... URL: From carsonhh at gmail.com Fri Jan 17 15:34:44 2014 From: carsonhh at gmail.com (Carson Holt) Date: Fri, 17 Jan 2014 14:34:44 -0700 Subject: [maker-devel] Problem with re-annotation In-Reply-To: References: Message-ID: The snap reports are empty, as if SNAP is never calling any genes even though it runs. Could you try running with a different HMM bundled with SNAP? Even though it?s not the right species, I just want to see if it will produce output under different circumstances. ?Carson From: Sanea Sheikh Date: Friday, January 17, 2014 at 12:21 PM To: Carson Holt Cc: Subject: Re: [maker-devel] Problem with re-annotation Hi Here are the two files that you asked for. The log was from a repeated attempt but the same issue was still there. I have attached the output from the repeated attempt as well so you can have a look at that. Sanea On Fri, Jan 17, 2014 at 6:55 PM, Carson Holt wrote: > Could you send me these two files. I put the full path below based on your > STDERR report. Also this log was from the original run having the issue, and > not a new repeated attempt at that one, correct? > > > First file ?> > /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redu > ndant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_13070 > 8_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1/theVoid.AR_HYBRID_130113_TI > NTIN_EF2ON_C1/AR_HYBRID_130113_TINTIN_EF2ON_C1.abinit_masked.0.run0%2Ehmm.snap > > > Second file ?> > /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redu > ndant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_13070 > 8_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1/AR_HYBRID_130113_TINTIN_EF2 > ON_C1.gff > > > Thanks, > Carson > > > From: Sanea Sheikh > Date: Thursday, January 16, 2014 at 3:52 AM > To: , Carson Holt > Subject: Fwd: [maker-devel] Problem with re-annotation > > Hello Carson > Here it is. > Sanea > > On Tue, Jan 14, 2014 at 1:39 AM, Carson Holt wrote: >> Hi Sanea, >> >> There are no snap calls in your results. It?s as if SNAP never even ran. >> Did you capture STDERR from your second run? If so can you send it to me. I >> just want to see if it even shows SNAP as having run in the progress reports. >> >> Thanks, >> Carson >> >> From: Sanea Sheikh >> Date: Monday, January 13, 2014 at 2:17 AM >> To: >> Subject: [maker-devel] Problem with re-annotation >> >> Hello >> >> I am using Maker to annotate a genome for which I only have EST data and some >> protein data. I ran Maker once using this EST and protein data (est2genome=1, >> protein2genome=1). I had the Maker output. I combined all the GFF files for >> all the contigs. I used the combined GFF file to train SNAP which gave me a >> .hmm file. Now I modified the Maker opts control file. I provided the hmm >> file in snap_hmm. I set est2genome=0 and protein2genome=0. I ran Maker again >> assuming that now I have trained the gene predictor and I would have better >> annotations. But now the output file that I get does not have Maker >> annotation. I have attached the control files and the output file for the >> re-run so you can have a look and let me know what I am doing wrong in order >> to re-annotate the genome using the output from the previous run. >> >> Sanea >> _______________________________________________ maker-devel mailing list >> maker-devel at box290.bluehost.comhttp://box290.bluehost.com/mailman/listinfo/ma >> ker-devel_yandell-lab.org > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From mike.thon at gmail.com Fri Jan 17 23:27:07 2014 From: mike.thon at gmail.com (Michael Thon) Date: Sat, 18 Jan 2014 06:27:07 +0100 Subject: [maker-devel] another maker re-annotation question Message-ID: <4BC8D8CA-A150-415D-9985-A2F5E758FDA9@gmail.com> We would like to re-run maker, keeping our locus IDs from a previous run, if possible. We added the old maker annotation in maker_gff and set everything else in the re-annotation section to 0. We also set map_forward=1. The output has gene annotations but the locus IDs were not transferred. I did some searching in the mailing list and it seems that our old annotation should be in model_gff. In that case do we need to strip out all the non-gene model features (match_part, etc) or can we leave it as is? Mike From dence at genetics.utah.edu Sat Jan 18 00:47:02 2014 From: dence at genetics.utah.edu (Daniel Ence) Date: Sat, 18 Jan 2014 06:47:02 +0000 Subject: [maker-devel] another maker re-annotation question In-Reply-To: <4BC8D8CA-A150-415D-9985-A2F5E758FDA9@gmail.com> References: <4BC8D8CA-A150-415D-9985-A2F5E758FDA9@gmail.com> Message-ID: Hi Mike, I am pretty sure that you need to strip out everything else. Just keep the "gene", "transcript" and "exon" features. Thanks, Daniel Daniel Ence Graduate Student Eccles Institute of Human Genetics University of Utah 15 North 2030 East, Room 2100 Salt Lake City, UT 84112-5330 ________________________________________ From: maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of Michael Thon [mike.thon at gmail.com] Sent: Friday, January 17, 2014 10:27 PM To: MAKER Subject: [maker-devel] another maker re-annotation question We would like to re-run maker, keeping our locus IDs from a previous run, if possible. We added the old maker annotation in maker_gff and set everything else in the re-annotation section to 0. We also set map_forward=1. The output has gene annotations but the locus IDs were not transferred. I did some searching in the mailing list and it seems that our old annotation should be in model_gff. In that case do we need to strip out all the non-gene model features (match_part, etc) or can we leave it as is? Mike _______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org From saneasheikh at gmail.com Fri Jan 17 13:21:40 2014 From: saneasheikh at gmail.com (Sanea Sheikh) Date: Fri, 17 Jan 2014 20:21:40 +0100 Subject: [maker-devel] Problem with re-annotation In-Reply-To: References: Message-ID: Hi Here are the two files that you asked for. The log was from a repeated attempt but the same issue was still there. I have attached the output from the repeated attempt as well so you can have a look at that. Sanea On Fri, Jan 17, 2014 at 6:55 PM, Carson Holt wrote: > Could you send me these two files. I put the full path below based on > your STDERR report. Also this log was from the original run having the > issue, and not a new repeated attempt at that one, correct? > > > First file ?> > > /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1/theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/AR_HYBRID_130113_TINTIN_EF2ON_C1.abinit_masked.0.run0%2Ehmm.snap > > > Second file ?> > > /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1/ > AR_HYBRID_130113_TINTIN_EF2ON_C1.gff > > > Thanks, > Carson > > > From: Sanea Sheikh > Date: Thursday, January 16, 2014 at 3:52 AM > To: , Carson Holt > Subject: Fwd: [maker-devel] Problem with re-annotation > > Hello Carson > Here it is. > Sanea > > On Tue, Jan 14, 2014 at 1:39 AM, Carson Holt wrote: > >> Hi Sanea, >> >> There are no snap calls in your results. It?s as if SNAP never even ran. >> Did you capture STDERR from your second run? If so can you send it to me. >> I just want to see if it even shows SNAP as having run in the progress >> reports. >> >> Thanks, >> Carson >> >> From: Sanea Sheikh >> Date: Monday, January 13, 2014 at 2:17 AM >> To: >> Subject: [maker-devel] Problem with re-annotation >> >> Hello >> >> I am using Maker to annotate a genome for which I only have EST data and >> some protein data. I ran Maker once using this EST and protein data >> (est2genome=1, protein2genome=1). I had the Maker output. I combined all >> the GFF files for all the contigs. I used the combined GFF file to train >> SNAP which gave me a .hmm file. Now I modified the Maker opts control file. >> I provided the hmm file in snap_hmm. I set est2genome=0 and >> protein2genome=0. I ran Maker again assuming that now I have trained the >> gene predictor and I would have better annotations. But now the output file >> that I get does not have Maker annotation. I have attached the control >> files and the output file for the re-run so you can have a look and let me >> know what I am doing wrong in order to re-annotate the genome using the >> output from the previous run. >> >> Sanea >> _______________________________________________ maker-devel mailing list >> maker-devel at box290.bluehost.com >> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org >> > > > -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: run1_0.zip Type: application/zip Size: 2242291 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: AR_HYBRID_130113_TINTIN_EF2ON_C1.gff Type: application/octet-stream Size: 123835 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: AR_HYBRID_130113_TINTIN_EF2ON_C1.abinit_masked.0.run0%2Ehmm.snap Type: application/octet-stream Size: 75 bytes Desc: not available URL: From saneasheikh at gmail.com Sat Jan 18 01:19:26 2014 From: saneasheikh at gmail.com (Sanea Sheikh) Date: Sat, 18 Jan 2014 08:19:26 +0100 Subject: [maker-devel] Problem with re-annotation In-Reply-To: References: Message-ID: Hello Here are the files (test.zip) I got from running Maker again with another HMM. It clearly worked this time. I have attached my HMM (run0.hmm) from the previous run (that went wrong) as well. I can see why snap wasn't calling genes before based on this HMM but do you know why I got an HMM like that? Sanea On Fri, Jan 17, 2014 at 10:34 PM, Carson Holt wrote: > The snap reports are empty, as if SNAP is never calling any genes even > though it runs. Could you try running with a different HMM bundled with > SNAP? Even though it?s not the right species, I just want to see if it will > produce output under different circumstances. > > ?Carson > > > From: Sanea Sheikh > Date: Friday, January 17, 2014 at 12:21 PM > To: Carson Holt > Cc: > Subject: Re: [maker-devel] Problem with re-annotation > > Hi > > Here are the two files that you asked for. > > The log was from a repeated attempt but the same issue was still there. I > have attached the output from the repeated attempt as well so you can have > a look at that. > > Sanea > > > On Fri, Jan 17, 2014 at 6:55 PM, Carson Holt wrote: > >> Could you send me these two files. I put the full path below based on >> your STDERR report. Also this log was from the original run having the >> issue, and not a new repeated attempt at that one, correct? >> >> >> First file ?> >> >> /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1/theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/AR_HYBRID_130113_TINTIN_EF2ON_C1.abinit_masked.0.run0%2Ehmm.snap >> >> >> Second file ?> >> >> /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1/ >> AR_HYBRID_130113_TINTIN_EF2ON_C1.gff >> >> >> Thanks, >> Carson >> >> >> From: Sanea Sheikh >> Date: Thursday, January 16, 2014 at 3:52 AM >> To: , Carson Holt >> Subject: Fwd: [maker-devel] Problem with re-annotation >> >> Hello Carson >> Here it is. >> Sanea >> >> On Tue, Jan 14, 2014 at 1:39 AM, Carson Holt wrote: >> >>> Hi Sanea, >>> >>> There are no snap calls in your results. It?s as if SNAP never even >>> ran. Did you capture STDERR from your second run? If so can you send it >>> to me. I just want to see if it even shows SNAP as having run in the >>> progress reports. >>> >>> Thanks, >>> Carson >>> >>> From: Sanea Sheikh >>> Date: Monday, January 13, 2014 at 2:17 AM >>> To: >>> Subject: [maker-devel] Problem with re-annotation >>> >>> Hello >>> >>> I am using Maker to annotate a genome for which I only have EST data and >>> some protein data. I ran Maker once using this EST and protein data >>> (est2genome=1, protein2genome=1). I had the Maker output. I combined all >>> the GFF files for all the contigs. I used the combined GFF file to train >>> SNAP which gave me a .hmm file. Now I modified the Maker opts control file. >>> I provided the hmm file in snap_hmm. I set est2genome=0 and >>> protein2genome=0. I ran Maker again assuming that now I have trained the >>> gene predictor and I would have better annotations. But now the output file >>> that I get does not have Maker annotation. I have attached the control >>> files and the output file for the re-run so you can have a look and let me >>> know what I am doing wrong in order to re-annotate the genome using the >>> output from the previous run. >>> >>> Sanea >>> _______________________________________________ maker-devel mailing list >>> maker-devel at box290.bluehost.com >>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org >>> >> >> >> > -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: test.zip Type: application/zip Size: 2642437 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: run0.hmm Type: application/octet-stream Size: 43968 bytes Desc: not available URL: From carsonhh at gmail.com Sat Jan 18 11:49:31 2014 From: carsonhh at gmail.com (Carson Holt) Date: Sat, 18 Jan 2014 10:49:31 -0700 Subject: [maker-devel] Problem with re-annotation In-Reply-To: References: Message-ID: I?m not an expert at all the details in the raw HMM, but it looks like all your transition probabilities are 0. You need to regenerate the HMM. How many models were used to generate the original HMM? ?Carson From: Sanea Sheikh Date: Saturday, January 18, 2014 at 12:19 AM To: Carson Holt Cc: Subject: Re: [maker-devel] Problem with re-annotation Hello Here are the files (test.zip) I got from running Maker again with another HMM. It clearly worked this time. I have attached my HMM (run0.hmm) from the previous run (that went wrong) as well. I can see why snap wasn't calling genes before based on this HMM but do you know why I got an HMM like that? Sanea On Fri, Jan 17, 2014 at 10:34 PM, Carson Holt wrote: > The snap reports are empty, as if SNAP is never calling any genes even though > it runs. Could you try running with a different HMM bundled with SNAP? Even > though it?s not the right species, I just want to see if it will produce > output under different circumstances. > > ?Carson > > > From: Sanea Sheikh > Date: Friday, January 17, 2014 at 12:21 PM > To: Carson Holt > Cc: > Subject: Re: [maker-devel] Problem with re-annotation > > Hi > > Here are the two files that you asked for. > > The log was from a repeated attempt but the same issue was still there. I have > attached the output from the repeated attempt as well so you can have a look > at that. > > Sanea > > > On Fri, Jan 17, 2014 at 6:55 PM, Carson Holt wrote: >> Could you send me these two files. I put the full path below based on your >> STDERR report. Also this log was from the original run having the issue, and >> not a new repeated attempt at that one, correct? >> >> >> First file ?> >> /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_red >> undant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130 >> 708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1/theVoid.AR_HYBRID_130113 >> _TINTIN_EF2ON_C1/AR_HYBRID_130113_TINTIN_EF2ON_C1.abinit_masked.0.run0%2Ehmm. >> snap >> >> >> Second file ?> >> /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_red >> undant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130 >> 708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1/AR_HYBRID_130113_TINTIN_ >> EF2ON_C1.gff >> >> >> Thanks, >> Carson >> >> >> From: Sanea Sheikh >> Date: Thursday, January 16, 2014 at 3:52 AM >> To: , Carson Holt >> Subject: Fwd: [maker-devel] Problem with re-annotation >> >> Hello Carson >> Here it is. >> Sanea >> >> On Tue, Jan 14, 2014 at 1:39 AM, Carson Holt wrote: >>> Hi Sanea, >>> >>> There are no snap calls in your results. It?s as if SNAP never even ran. >>> Did you capture STDERR from your second run? If so can you send it to me. >>> I just want to see if it even shows SNAP as having run in the progress >>> reports. >>> >>> Thanks, >>> Carson >>> >>> From: Sanea Sheikh >>> Date: Monday, January 13, 2014 at 2:17 AM >>> To: >>> Subject: [maker-devel] Problem with re-annotation >>> >>> Hello >>> >>> I am using Maker to annotate a genome for which I only have EST data and >>> some protein data. I ran Maker once using this EST and protein data >>> (est2genome=1, protein2genome=1). I had the Maker output. I combined all the >>> GFF files for all the contigs. I used the combined GFF file to train SNAP >>> which gave me a .hmm file. Now I modified the Maker opts control file. I >>> provided the hmm file in snap_hmm. I set est2genome=0 and protein2genome=0. >>> I ran Maker again assuming that now I have trained the gene predictor and I >>> would have better annotations. But now the output file that I get does not >>> have Maker annotation. I have attached the control files and the output file >>> for the re-run so you can have a look and let me know what I am doing wrong >>> in order to re-annotate the genome using the output from the previous run. >>> >>> Sanea >>> _______________________________________________ maker-devel mailing list >>> maker-devel at box290.bluehost.comhttp://box290.bluehost.com/mailman/listinfo/m >>> aker-devel_yandell-lab.org >> >> > -------------- next part -------------- An HTML attachment was scrubbed... URL: From charlos9 at gmail.com Tue Jan 21 11:39:03 2014 From: charlos9 at gmail.com (carlos vargas) Date: Tue, 21 Jan 2014 18:39:03 +0100 Subject: [maker-devel] Problem installing maker In-Reply-To: References: Message-ID: Hi Barry, Thank you for you help. I got maker running, however when I try to install it with MPI support I face some issues. I installed MPICH2 and performed the test that comes with the package and it went smoothly, however when I try to install maker the following messages appear. Thank you in advance, Carlos ~/maker/src$ perl Build.PL MAKER supports distributed parallelization via MPI. Would you like to configure MAKER for MPI (This requires that you have an MPI client installed)? [N ]y Please specify the path to 'mpicc' on your system: [/usr/bin/mpicc ] /usr/bin/mpicc Please specify the path to the directory containing 'mpi.h': [/usr/include/mpi ] /usr/include/mpi Would you like to install the web interface to MAKER (MWAS) on this machine This requires that you be logged in as root or use sudo for './Build install'? [N ] N Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'MAKER' version '2.3' The file 'Build' has been created for you to finish installing MAKER. ============================================================================== STATUS MAKER 2.3 ============================================================================== PERL Dependencies: VERIFIED External Programs: VERIFIED External C Libraries: VERIFIED MPI SUPPORT: ENABLED MWAS Web Interface: DISABLED MAKER PACKAGE: CONFIGURATION OK Important Commands: ./Build installdeps #installs missing PERL dependencies ./Build installexes #installs all missing external programs ./Build install #installs MAKER ./Build status #Shows this status menu Other Commands: ./Build repeatmasker #installs RepeatMasker (asks for RepBase) ./Build blast #installs BLAST (NCBI BLAST+) ./Build exonerate #installs Exonerate (v2 on UNIX / v1 on Mac OSX) ./Build snap #installs SNAP ./Build augustus #installs Augustus ./Build apollo #installs Apollo ./Build gbrowse #installs GBrowse (must be root) ./Build jbrowse #installs JBrowse (MAKER copy, not web accecible) ./Build webapollo #installs WebApollo (use maker2wap to create DBs) ./Build mpich2 #installs MPICH2 (but manual install recommended) ~/maker/src$ ./Build install Configuring MAKER with MPI support Installing MAKER... Configuring MAKER with MPI support Subroutine dl_load_flags redefined at (eval 93) line 8. Installing /home/cvargas/maker/src/../perl/lib/MAKER/ConfigData.pm Skip /home/cvargas/maker/src/../perl/config-x86_64-linux-gnu-thread-multi-5.014002 (unchanged) On Mon, Jan 13, 2014 at 10:21 PM, Barry Moore wrote: > Hi Carlos, > > Did you run ./Build install? If not do that first and then you want to > run the copy of maker in ~/software/maker/bin/maker. > > B > > On Jan 13, 2014, at 1:00 PM, carlos vargas wrote: > > Hello, > > I have been trying to install maker but I've been facing several issues. > After installing all of the prerequisites I ran perl Build.PL and ./Build > install. No issues were detected. Afterwards I tried to test maker by > simply executing maker -h and got the following error: > > Can't locate MAKER/ConfigData.pm in @INC (@INC contains: > ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib > ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl > /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 > /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 > /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. > BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line > 42. > > I found a similar thread which suggested reinstalling (which I did) but I > still face the same issue. The full messages are below. > > > Thank you for your help! > > Carlos > > > ~/software/maker/src$ sudo perl Build.PL > > MAKER supports distributed parallelization via MPI. > Would you like to configure MAKER for MPI (This > requires that you have an MPI client installed)? [N ] > N > > Would you like to install the web interface to MAKER (MWAS) on this machine > This requires that you be logged in as root or use sudo for './Build > install'? [N ] > N > Created MYMETA.yml and MYMETA.json > Creating new 'Build' script for 'MAKER' version '2.3' > > > The file 'Build' has been created for you to finish installing MAKER. > > > > ============================================================================== > STATUS MAKER 2.3 > > ============================================================================== > PERL Dependencies: VERIFIED > External Programs: VERIFIED > External C Libraries: VERIFIED > MPI SUPPORT: DISABLED > MWAS Web Interface: DISABLED > MAKER PACKAGE: CONFIGURATION OK > > > Important Commands: > ./Build installdeps #installs missing PERL dependencies > ./Build installexes #installs all missing external programs > ./Build install #installs MAKER > ./Build status #Shows this status menu > > Other Commands: > ./Build repeatmasker #installs RepeatMasker (asks for RepBase) > ./Build blast #installs BLAST (NCBI BLAST+) > ./Build exonerate #installs Exonerate (v2 on UNIX / v1 on > Mac OSX) > ./Build snap #installs SNAP > ./Build augustus #installs Augustus > ./Build apollo #installs Apollo > ./Build gbrowse #installs GBrowse (must be root) > ./Build jbrowse #installs JBrowse (MAKER copy, not web > accecible) > ./Build webapollo #installs WebApollo (use maker2wap to > create DBs) > ./Build mpich2 #installs MPICH2 (but manual install > recommended) > > ~/software/maker/src$ sudo ./Build install > Building MAKER > Installing MAKER... > Building MAKER > Installing ~/software/maker/src/../perl/lib/MAKER/ConfigData.pm > > ~/software/maker/src$ maker -h > Can't locate MAKER/ConfigData.pm in @INC (@INC contains: > ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib > ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl > /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 > /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 > /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. > BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line > 42. > > > _______________________________________________ > maker-devel mailing list > maker-devel at box290.bluehost.com > http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org > > > Barry Moore > Research Scientist > Dept. of Human Genetics > University of Utah > Salt Lake City, UT 84112 > -------------------------------------------- > (801) 585-3543 > > > > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From dence at genetics.utah.edu Tue Jan 21 11:45:32 2014 From: dence at genetics.utah.edu (Daniel Ence) Date: Tue, 21 Jan 2014 17:45:32 +0000 Subject: [maker-devel] Problem installing maker In-Reply-To: References: , Message-ID: Hi Carlos, That message looks like maker installed correctly. Have you tried running it in MPI now? The command to use MPI for maker will look something like "mpiexec -n X maker" where X is the number of processors you want it to use. Thanks, Daniel Daniel Ence Graduate Student Eccles Institute of Human Genetics University of Utah 15 North 2030 East, Room 2100 Salt Lake City, UT 84112-5330 ________________________________ From: maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of carlos vargas [charlos9 at gmail.com] Sent: Tuesday, January 21, 2014 10:39 AM To: Barry Moore Cc: maker-devel at yandell-lab.org Subject: Re: [maker-devel] Problem installing maker Hi Barry, Thank you for you help. I got maker running, however when I try to install it with MPI support I face some issues. I installed MPICH2 and performed the test that comes with the package and it went smoothly, however when I try to install maker the following messages appear. Thank you in advance, Carlos ~/maker/src$ perl Build.PL MAKER supports distributed parallelization via MPI. Would you like to configure MAKER for MPI (This requires that you have an MPI client installed)? [N ]y Please specify the path to 'mpicc' on your system: [/usr/bin/mpicc ] /usr/bin/mpicc Please specify the path to the directory containing 'mpi.h': [/usr/include/mpi ] /usr/include/mpi Would you like to install the web interface to MAKER (MWAS) on this machine This requires that you be logged in as root or use sudo for './Build install'? [N ] N Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'MAKER' version '2.3' The file 'Build' has been created for you to finish installing MAKER. ============================================================================== STATUS MAKER 2.3 ============================================================================== PERL Dependencies: VERIFIED External Programs: VERIFIED External C Libraries: VERIFIED MPI SUPPORT: ENABLED MWAS Web Interface: DISABLED MAKER PACKAGE: CONFIGURATION OK Important Commands: ./Build installdeps #installs missing PERL dependencies ./Build installexes #installs all missing external programs ./Build install #installs MAKER ./Build status #Shows this status menu Other Commands: ./Build repeatmasker #installs RepeatMasker (asks for RepBase) ./Build blast #installs BLAST (NCBI BLAST+) ./Build exonerate #installs Exonerate (v2 on UNIX / v1 on Mac OSX) ./Build snap #installs SNAP ./Build augustus #installs Augustus ./Build apollo #installs Apollo ./Build gbrowse #installs GBrowse (must be root) ./Build jbrowse #installs JBrowse (MAKER copy, not web accecible) ./Build webapollo #installs WebApollo (use maker2wap to create DBs) ./Build mpich2 #installs MPICH2 (but manual install recommended) ~/maker/src$ ./Build install Configuring MAKER with MPI support Installing MAKER... Configuring MAKER with MPI support Subroutine dl_load_flags redefined at (eval 93) line 8. Installing /home/cvargas/maker/src/../perl/lib/MAKER/ConfigData.pm Skip /home/cvargas/maker/src/../perl/config-x86_64-linux-gnu-thread-multi-5.014002 (unchanged) On Mon, Jan 13, 2014 at 10:21 PM, Barry Moore > wrote: Hi Carlos, Did you run ./Build install? If not do that first and then you want to run the copy of maker in ~/software/maker/bin/maker. B On Jan 13, 2014, at 1:00 PM, carlos vargas wrote: Hello, I have been trying to install maker but I've been facing several issues. After installing all of the prerequisites I ran perl Build.PL and ./Build install. No issues were detected. Afterwards I tried to test maker by simply executing maker -h and got the following error: Can't locate MAKER/ConfigData.pm in @INC (@INC contains: ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42. I found a similar thread which suggested reinstalling (which I did) but I still face the same issue. The full messages are below. Thank you for your help! Carlos ~/software/maker/src$ sudo perl Build.PL MAKER supports distributed parallelization via MPI. Would you like to configure MAKER for MPI (This requires that you have an MPI client installed)? [N ] N Would you like to install the web interface to MAKER (MWAS) on this machine This requires that you be logged in as root or use sudo for './Build install'? [N ] N Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'MAKER' version '2.3' The file 'Build' has been created for you to finish installing MAKER. ============================================================================== STATUS MAKER 2.3 ============================================================================== PERL Dependencies: VERIFIED External Programs: VERIFIED External C Libraries: VERIFIED MPI SUPPORT: DISABLED MWAS Web Interface: DISABLED MAKER PACKAGE: CONFIGURATION OK Important Commands: ./Build installdeps #installs missing PERL dependencies ./Build installexes #installs all missing external programs ./Build install #installs MAKER ./Build status #Shows this status menu Other Commands: ./Build repeatmasker #installs RepeatMasker (asks for RepBase) ./Build blast #installs BLAST (NCBI BLAST+) ./Build exonerate #installs Exonerate (v2 on UNIX / v1 on Mac OSX) ./Build snap #installs SNAP ./Build augustus #installs Augustus ./Build apollo #installs Apollo ./Build gbrowse #installs GBrowse (must be root) ./Build jbrowse #installs JBrowse (MAKER copy, not web accecible) ./Build webapollo #installs WebApollo (use maker2wap to create DBs) ./Build mpich2 #installs MPICH2 (but manual install recommended) ~/software/maker/src$ sudo ./Build install Building MAKER Installing MAKER... Building MAKER Installing ~/software/maker/src/../perl/lib/MAKER/ConfigData.pm ~/software/maker/src$ maker -h Can't locate MAKER/ConfigData.pm in @INC (@INC contains: ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42. _______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org Barry Moore Research Scientist Dept. of Human Genetics University of Utah Salt Lake City, UT 84112 -------------------------------------------- (801) 585-3543 -------------- next part -------------- An HTML attachment was scrubbed... URL: From charlos9 at gmail.com Tue Jan 21 11:49:35 2014 From: charlos9 at gmail.com (carlos vargas) Date: Tue, 21 Jan 2014 18:49:35 +0100 Subject: [maker-devel] Problem installing maker In-Reply-To: References: Message-ID: Thank you very much for your quick reply! Sorry, I forgot to attach the error message. /gnmP05/Carlos/mpiannotate$ ~/mpich2-install/bin/mpiexec -n 4 ~/maker/bin/maker /usr/bin/perl: symbol lookup error: /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so: undefined symbol: mca_base_param_reg_int /usr/bin/perl: symbol lookup error: /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so: undefined symbol: mca_base_param_reg_int /usr/bin/perl: symbol lookup error: /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so: undefined symbol: mca_base_param_reg_int /usr/bin/perl: symbol lookup error: /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so: undefined symbol: mca_base_param_reg_int =================================================================================== = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES = EXIT CODE: 127 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES =================================================================================== On Tue, Jan 21, 2014 at 6:45 PM, Daniel Ence wrote: > Hi Carlos, That message looks like maker installed correctly. Have you > tried running it in MPI now? The command to use MPI for maker will look > something like "mpiexec -n X maker" where X is the number of processors you > want it to use. > > Thanks, > Daniel > > Daniel Ence > Graduate Student > Eccles Institute of Human Genetics > University of Utah > 15 North 2030 East, Room 2100 > Salt Lake City, UT 84112-5330 > ------------------------------ > *From:* maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of > carlos vargas [charlos9 at gmail.com] > *Sent:* Tuesday, January 21, 2014 10:39 AM > *To:* Barry Moore > *Cc:* maker-devel at yandell-lab.org > *Subject:* Re: [maker-devel] Problem installing maker > > Hi Barry, > > Thank you for you help. I got maker running, however when I try to > install it with MPI support I face some issues. I installed MPICH2 and > performed the test that comes with the package and it went smoothly, > however when I try to install maker the following messages appear. > > > Thank you in advance, > > Carlos > > ~/maker/src$ perl Build.PL > > MAKER supports distributed parallelization via MPI. > Would you like to configure MAKER for MPI (This > requires that you have an MPI client installed)? [N ]y > > Please specify the path to 'mpicc' on your system: [/usr/bin/mpicc ] > /usr/bin/mpicc > > Please specify the path to the directory containing 'mpi.h': > [/usr/include/mpi ] > /usr/include/mpi > > Would you like to install the web interface to MAKER (MWAS) on this > machine > This requires that you be logged in as root or use sudo for './Build > install'? [N ] > N > Created MYMETA.yml and MYMETA.json > Creating new 'Build' script for 'MAKER' version '2.3' > > > The file 'Build' has been created for you to finish installing MAKER. > > > > ============================================================================== > STATUS MAKER 2.3 > > ============================================================================== > PERL Dependencies: VERIFIED > External Programs: VERIFIED > External C Libraries: VERIFIED > MPI SUPPORT: ENABLED > MWAS Web Interface: DISABLED > MAKER PACKAGE: CONFIGURATION OK > > > Important Commands: > ./Build installdeps #installs missing PERL dependencies > ./Build installexes #installs all missing external programs > ./Build install #installs MAKER > ./Build status #Shows this status menu > > Other Commands: > ./Build repeatmasker #installs RepeatMasker (asks for RepBase) > ./Build blast #installs BLAST (NCBI BLAST+) > ./Build exonerate #installs Exonerate (v2 on UNIX / v1 on Mac OSX) > ./Build snap #installs SNAP > ./Build augustus #installs Augustus > ./Build apollo #installs Apollo > ./Build gbrowse #installs GBrowse (must be root) > ./Build jbrowse #installs JBrowse (MAKER copy, not web accecible) > ./Build webapollo #installs WebApollo (use maker2wap to create DBs) > ./Build mpich2 #installs MPICH2 (but manual install recommended) > ~/maker/src$ ./Build install > Configuring MAKER with MPI support > Installing MAKER... > Configuring MAKER with MPI support > Subroutine dl_load_flags redefined at (eval 93) line 8. > Installing /home/cvargas/maker/src/../perl/lib/MAKER/ConfigData.pm > Skip > /home/cvargas/maker/src/../perl/config-x86_64-linux-gnu-thread-multi-5.014002 > (unchanged) > > > > > On Mon, Jan 13, 2014 at 10:21 PM, Barry Moore wrote: > >> Hi Carlos, >> >> Did you run ./Build install? If not do that first and then you want to >> run the copy of maker in ~/software/maker/bin/maker. >> >> B >> >> On Jan 13, 2014, at 1:00 PM, carlos vargas wrote: >> >> Hello, >> >> I have been trying to install maker but I've been facing several >> issues. After installing all of the prerequisites I ran perl Build.PL and >> ./Build install. No issues were detected. Afterwards I tried to test maker >> by simply executing maker -h and got the following error: >> >> Can't locate MAKER/ConfigData.pm in @INC (@INC contains: >> ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib >> ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl >> /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 >> /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 >> /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. >> BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line >> 42. >> >> I found a similar thread which suggested reinstalling (which I did) but >> I still face the same issue. The full messages are below. >> >> >> Thank you for your help! >> >> Carlos >> >> >> ~/software/maker/src$ sudo perl Build.PL >> >> MAKER supports distributed parallelization via MPI. >> Would you like to configure MAKER for MPI (This >> requires that you have an MPI client installed)? [N ] >> N >> >> Would you like to install the web interface to MAKER (MWAS) on this >> machine >> This requires that you be logged in as root or use sudo for './Build >> install'? [N ] >> N >> Created MYMETA.yml and MYMETA.json >> Creating new 'Build' script for 'MAKER' version '2.3' >> >> >> The file 'Build' has been created for you to finish installing MAKER. >> >> >> >> ============================================================================== >> STATUS MAKER 2.3 >> >> ============================================================================== >> PERL Dependencies: VERIFIED >> External Programs: VERIFIED >> External C Libraries: VERIFIED >> MPI SUPPORT: DISABLED >> MWAS Web Interface: DISABLED >> MAKER PACKAGE: CONFIGURATION OK >> >> >> Important Commands: >> ./Build installdeps #installs missing PERL dependencies >> ./Build installexes #installs all missing external programs >> ./Build install #installs MAKER >> ./Build status #Shows this status menu >> >> Other Commands: >> ./Build repeatmasker #installs RepeatMasker (asks for RepBase) >> ./Build blast #installs BLAST (NCBI BLAST+) >> ./Build exonerate #installs Exonerate (v2 on UNIX / v1 on >> Mac OSX) >> ./Build snap #installs SNAP >> ./Build augustus #installs Augustus >> ./Build apollo #installs Apollo >> ./Build gbrowse #installs GBrowse (must be root) >> ./Build jbrowse #installs JBrowse (MAKER copy, not web >> accecible) >> ./Build webapollo #installs WebApollo (use maker2wap to >> create DBs) >> ./Build mpich2 #installs MPICH2 (but manual install >> recommended) >> >> ~/software/maker/src$ sudo ./Build install >> Building MAKER >> Installing MAKER... >> Building MAKER >> Installing ~/software/maker/src/../perl/lib/MAKER/ConfigData.pm >> >> ~/software/maker/src$ maker -h >> Can't locate MAKER/ConfigData.pm in @INC (@INC contains: >> ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib >> ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl >> /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 >> /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 >> /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. >> BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line >> 42. >> >> >> _______________________________________________ >> maker-devel mailing list >> maker-devel at box290.bluehost.com >> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org >> >> >> Barry Moore >> Research Scientist >> Dept. of Human Genetics >> University of Utah >> Salt Lake City, UT 84112 >> -------------------------------------------- >> (801) 585-3543 >> >> >> >> >> > -------------- next part -------------- An HTML attachment was scrubbed... URL: From carsonhh at gmail.com Tue Jan 21 11:55:10 2014 From: carsonhh at gmail.com (Carson Holt) Date: Tue, 21 Jan 2014 10:55:10 -0700 Subject: [maker-devel] Problem installing maker In-Reply-To: References: Message-ID: The error message says you are using OpenMPI and not MPICH2 ?> /usr/lib/openmpi/lib/openmpi To use OpenMPI set the following before installing maker and before running maker (best to just add it to your ~/.bash_profile) export LD_PRELOAD=/usr/lib/openmpi/lib/libmpi.so You will have to rerun the ?perl Build.PL? and ?./Build install? steps after running this command. Setting LD_PRELOAD is required for any program to use OpenMPI?s shared libraries. Thanks, Carosn From: carlos vargas Date: Tuesday, January 21, 2014 at 10:49 AM To: Daniel Ence Cc: "maker-devel at yandell-lab.org" Subject: Re: [maker-devel] Problem installing maker Thank you very much for your quick reply! Sorry, I forgot to attach the error message. /gnmP05/Carlos/mpiannotate$ ~/mpich2-install/bin/mpiexec -n 4 ~/maker/bin/maker /usr/bin/perl: symbol lookup error: /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so: undefined symbol: mca_base_param_reg_int /usr/bin/perl: symbol lookup error: /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so: undefined symbol: mca_base_param_reg_int /usr/bin/perl: symbol lookup error: /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so: undefined symbol: mca_base_param_reg_int /usr/bin/perl: symbol lookup error: /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so: undefined symbol: mca_base_param_reg_int ============================================================================ ======= = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES = EXIT CODE: 127 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES ============================================================================ ======= On Tue, Jan 21, 2014 at 6:45 PM, Daniel Ence wrote: > Hi Carlos, That message looks like maker installed correctly. Have you tried > running it in MPI now? The command to use MPI for maker will look something > like "mpiexec -n X maker" where X is the number of processors you want it to > use. > > Thanks, > Daniel > > Daniel Ence > Graduate Student > Eccles Institute of Human Genetics > University of Utah > 15 North 2030 East, Room 2100 > Salt Lake City, UT 84112-5330 > > From: maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of carlos > vargas [charlos9 at gmail.com] > Sent: Tuesday, January 21, 2014 10:39 AM > To: Barry Moore > Cc: maker-devel at yandell-lab.org > Subject: Re: [maker-devel] Problem installing maker > > Hi Barry, > > Thank you for you help. I got maker running, however when I try to install it > with MPI support I face some issues. I installed MPICH2 and performed the test > that comes with the package and it went smoothly, however when I try to > install maker the following messages appear. > > > Thank you in advance, > > Carlos > > ~/maker/src$ perl Build.PL > > MAKER supports distributed parallelization via MPI. > Would you like to configure MAKER for MPI (This > requires that you have an MPI client installed)? [N ]y > > Please specify the path to 'mpicc' on your system: [/usr/bin/mpicc ] > /usr/bin/mpicc > > Please specify the path to the directory containing 'mpi.h': [/usr/include/mpi > ] > /usr/include/mpi > > Would you like to install the web interface to MAKER (MWAS) on this machine > This requires that you be logged in as root or use sudo for './Build install'? > [N ] > N > Created MYMETA.yml and MYMETA.json > Creating new 'Build' script for 'MAKER' version '2.3' > > > The file 'Build' has been created for you to finish installing MAKER. > > > ============================================================================== > STATUS MAKER 2.3 > ============================================================================== > PERL Dependencies: VERIFIED > External Programs: VERIFIED > External C Libraries: VERIFIED > MPI SUPPORT: ENABLED > MWAS Web Interface: DISABLED > MAKER PACKAGE: CONFIGURATION OK > > > Important Commands: > ./Build installdeps#installs missing PERL dependencies > ./Build installexes#installs all missing external programs > ./Build install#installs MAKER > ./Build status#Shows this status menu > > Other Commands: > ./Build repeatmasker#installs RepeatMasker (asks for RepBase) > ./Build blast#installs BLAST (NCBI BLAST+) > ./Build exonerate#installs Exonerate (v2 on UNIX / v1 on Mac OSX) > ./Build snap#installs SNAP > ./Build augustus#installs Augustus > ./Build apollo#installs Apollo > ./Build gbrowse#installs GBrowse (must be root) > ./Build jbrowse#installs JBrowse (MAKER copy, not web accecible) > ./Build webapollo#installs WebApollo (use maker2wap to create DBs) > ./Build mpich2#installs MPICH2 (but manual install recommended) > ~/maker/src$ ./Build install > Configuring MAKER with MPI support > Installing MAKER... > Configuring MAKER with MPI support > Subroutine dl_load_flags redefined at (eval 93) line 8. > Installing /home/cvargas/maker/src/../perl/lib/MAKER/ConfigData.pm > Skip > /home/cvargas/maker/src/../perl/config-x86_64-linux-gnu-thread-multi-5.014002 > (unchanged) > > > > > On Mon, Jan 13, 2014 at 10:21 PM, Barry Moore wrote: >> Hi Carlos, >> >> Did you run ./Build install? If not do that first and then you want to run >> the copy of maker in ~/software/maker/bin/maker. >> >> B >> >> On Jan 13, 2014, at 1:00 PM, carlos vargas wrote: >> >>> Hello, >>> >>> I have been trying to install maker but I've been facing several issues. >>> After installing all of the prerequisites I ran perl Build.PL and ./Build >>> install. No issues were detected. Afterwards I tried to test maker by simply >>> executing maker -h and got the following error: >>> >>> Can't locate MAKER/ConfigData.pm in @INC (@INC contains: >>> ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib >>> ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl >>> /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 >>> /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 >>> /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. >>> BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42. >>> >>> I found a similar thread which suggested reinstalling (which I did) but I >>> still face the same issue. The full messages are below. >>> >>> >>> Thank you for your help! >>> >>> Carlos >>> >>> >>> ~/software/maker/src$ sudo perl Build.PL >>> >>> MAKER supports distributed parallelization via MPI. >>> Would you like to configure MAKER for MPI (This >>> requires that you have an MPI client installed)? [N ] >>> N >>> >>> Would you like to install the web interface to MAKER (MWAS) on this machine >>> This requires that you be logged in as root or use sudo for './Build >>> install'? [N ] >>> N >>> Created MYMETA.yml and MYMETA.json >>> Creating new 'Build' script for 'MAKER' version '2.3' >>> >>> >>> The file 'Build' has been created for you to finish installing MAKER. >>> >>> >>> ============================================================================ >>> == >>> STATUS MAKER 2.3 >>> ============================================================================ >>> == >>> PERL Dependencies: VERIFIED >>> External Programs: VERIFIED >>> External C Libraries: VERIFIED >>> MPI SUPPORT: DISABLED >>> MWAS Web Interface: DISABLED >>> MAKER PACKAGE: CONFIGURATION OK >>> >>> >>> Important Commands: >>> ./Build installdeps #installs missing PERL dependencies >>> ./Build installexes #installs all missing external programs >>> ./Build install #installs MAKER >>> ./Build status #Shows this status menu >>> >>> Other Commands: >>> ./Build repeatmasker #installs RepeatMasker (asks for RepBase) >>> ./Build blast #installs BLAST (NCBI BLAST+) >>> ./Build exonerate #installs Exonerate (v2 on UNIX / v1 on Mac >>> OSX) >>> ./Build snap #installs SNAP >>> ./Build augustus #installs Augustus >>> ./Build apollo #installs Apollo >>> ./Build gbrowse #installs GBrowse (must be root) >>> ./Build jbrowse #installs JBrowse (MAKER copy, not web >>> accecible) >>> ./Build webapollo #installs WebApollo (use maker2wap to create >>> DBs) >>> ./Build mpich2 #installs MPICH2 (but manual install >>> recommended) >>> >>> ~/software/maker/src$ sudo ./Build install >>> Building MAKER >>> Installing MAKER... >>> Building MAKER >>> Installing ~/software/maker/src/../perl/lib/MAKER/ConfigData.pm >>> >>> ~/software/maker/src$ maker -h >>> Can't locate MAKER/ConfigData.pm in @INC (@INC contains: >>> ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib >>> ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl >>> /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 >>> /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 >>> /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. >>> BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42. >>> >>> >>> _______________________________________________ >>> maker-devel mailing list >>> maker-devel at box290.bluehost.com >>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org >> >> Barry Moore >> Research Scientist >> Dept. of Human Genetics >> University of Utah >> Salt Lake City, UT 84112 >> -------------------------------------------- >> (801) 585-3543 >> >> >> >> > _______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org -------------- next part -------------- An HTML attachment was scrubbed... URL: From carsonhh at gmail.com Tue Jan 21 11:56:55 2014 From: carsonhh at gmail.com (Carson Holt) Date: Tue, 21 Jan 2014 10:56:55 -0700 Subject: [maker-devel] Problem installing maker In-Reply-To: References: Message-ID: FYI. You may be mixing your MPI configurations, by supplying some values from MPICH2 and others from OpenMPI. You will need to check your configurations. ?Carson From: Carson Holt Date: Tuesday, January 21, 2014 at 10:55 AM To: carlos vargas , Daniel Ence Cc: "maker-devel at yandell-lab.org" Subject: Re: [maker-devel] Problem installing maker The error message says you are using OpenMPI and not MPICH2 ?> /usr/lib/openmpi/lib/openmpi To use OpenMPI set the following before installing maker and before running maker (best to just add it to your ~/.bash_profile) export LD_PRELOAD=/usr/lib/openmpi/lib/libmpi.so You will have to rerun the ?perl Build.PL? and ?./Build install? steps after running this command. Setting LD_PRELOAD is required for any program to use OpenMPI?s shared libraries. Thanks, Carosn From: carlos vargas Date: Tuesday, January 21, 2014 at 10:49 AM To: Daniel Ence Cc: "maker-devel at yandell-lab.org" Subject: Re: [maker-devel] Problem installing maker Thank you very much for your quick reply! Sorry, I forgot to attach the error message. /gnmP05/Carlos/mpiannotate$ ~/mpich2-install/bin/mpiexec -n 4 ~/maker/bin/maker /usr/bin/perl: symbol lookup error: /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so: undefined symbol: mca_base_param_reg_int /usr/bin/perl: symbol lookup error: /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so: undefined symbol: mca_base_param_reg_int /usr/bin/perl: symbol lookup error: /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so: undefined symbol: mca_base_param_reg_int /usr/bin/perl: symbol lookup error: /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so: undefined symbol: mca_base_param_reg_int ============================================================================ ======= = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES = EXIT CODE: 127 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES ============================================================================ ======= On Tue, Jan 21, 2014 at 6:45 PM, Daniel Ence wrote: > Hi Carlos, That message looks like maker installed correctly. Have you tried > running it in MPI now? The command to use MPI for maker will look something > like "mpiexec -n X maker" where X is the number of processors you want it to > use. > > Thanks, > Daniel > > Daniel Ence > Graduate Student > Eccles Institute of Human Genetics > University of Utah > 15 North 2030 East, Room 2100 > Salt Lake City, UT 84112-5330 > > From: maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of carlos > vargas [charlos9 at gmail.com] > Sent: Tuesday, January 21, 2014 10:39 AM > To: Barry Moore > Cc: maker-devel at yandell-lab.org > Subject: Re: [maker-devel] Problem installing maker > > Hi Barry, > > Thank you for you help. I got maker running, however when I try to install it > with MPI support I face some issues. I installed MPICH2 and performed the test > that comes with the package and it went smoothly, however when I try to > install maker the following messages appear. > > > Thank you in advance, > > Carlos > > ~/maker/src$ perl Build.PL > > MAKER supports distributed parallelization via MPI. > Would you like to configure MAKER for MPI (This > requires that you have an MPI client installed)? [N ]y > > Please specify the path to 'mpicc' on your system: [/usr/bin/mpicc ] > /usr/bin/mpicc > > Please specify the path to the directory containing 'mpi.h': [/usr/include/mpi > ] > /usr/include/mpi > > Would you like to install the web interface to MAKER (MWAS) on this machine > This requires that you be logged in as root or use sudo for './Build install'? > [N ] > N > Created MYMETA.yml and MYMETA.json > Creating new 'Build' script for 'MAKER' version '2.3' > > > The file 'Build' has been created for you to finish installing MAKER. > > > ============================================================================== > STATUS MAKER 2.3 > ============================================================================== > PERL Dependencies: VERIFIED > External Programs: VERIFIED > External C Libraries: VERIFIED > MPI SUPPORT: ENABLED > MWAS Web Interface: DISABLED > MAKER PACKAGE: CONFIGURATION OK > > > Important Commands: > ./Build installdeps#installs missing PERL dependencies > ./Build installexes#installs all missing external programs > ./Build install#installs MAKER > ./Build status#Shows this status menu > > Other Commands: > ./Build repeatmasker#installs RepeatMasker (asks for RepBase) > ./Build blast#installs BLAST (NCBI BLAST+) > ./Build exonerate#installs Exonerate (v2 on UNIX / v1 on Mac OSX) > ./Build snap#installs SNAP > ./Build augustus#installs Augustus > ./Build apollo#installs Apollo > ./Build gbrowse#installs GBrowse (must be root) > ./Build jbrowse#installs JBrowse (MAKER copy, not web accecible) > ./Build webapollo#installs WebApollo (use maker2wap to create DBs) > ./Build mpich2#installs MPICH2 (but manual install recommended) > ~/maker/src$ ./Build install > Configuring MAKER with MPI support > Installing MAKER... > Configuring MAKER with MPI support > Subroutine dl_load_flags redefined at (eval 93) line 8. > Installing /home/cvargas/maker/src/../perl/lib/MAKER/ConfigData.pm > Skip > /home/cvargas/maker/src/../perl/config-x86_64-linux-gnu-thread-multi-5.014002 > (unchanged) > > > > > On Mon, Jan 13, 2014 at 10:21 PM, Barry Moore wrote: >> Hi Carlos, >> >> Did you run ./Build install? If not do that first and then you want to run >> the copy of maker in ~/software/maker/bin/maker. >> >> B >> >> On Jan 13, 2014, at 1:00 PM, carlos vargas wrote: >> >>> Hello, >>> >>> I have been trying to install maker but I've been facing several issues. >>> After installing all of the prerequisites I ran perl Build.PL and ./Build >>> install. No issues were detected. Afterwards I tried to test maker by simply >>> executing maker -h and got the following error: >>> >>> Can't locate MAKER/ConfigData.pm in @INC (@INC contains: >>> ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib >>> ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl >>> /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 >>> /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 >>> /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. >>> BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42. >>> >>> I found a similar thread which suggested reinstalling (which I did) but I >>> still face the same issue. The full messages are below. >>> >>> >>> Thank you for your help! >>> >>> Carlos >>> >>> >>> ~/software/maker/src$ sudo perl Build.PL >>> >>> MAKER supports distributed parallelization via MPI. >>> Would you like to configure MAKER for MPI (This >>> requires that you have an MPI client installed)? [N ] >>> N >>> >>> Would you like to install the web interface to MAKER (MWAS) on this machine >>> This requires that you be logged in as root or use sudo for './Build >>> install'? [N ] >>> N >>> Created MYMETA.yml and MYMETA.json >>> Creating new 'Build' script for 'MAKER' version '2.3' >>> >>> >>> The file 'Build' has been created for you to finish installing MAKER. >>> >>> >>> ============================================================================ >>> == >>> STATUS MAKER 2.3 >>> ============================================================================ >>> == >>> PERL Dependencies: VERIFIED >>> External Programs: VERIFIED >>> External C Libraries: VERIFIED >>> MPI SUPPORT: DISABLED >>> MWAS Web Interface: DISABLED >>> MAKER PACKAGE: CONFIGURATION OK >>> >>> >>> Important Commands: >>> ./Build installdeps #installs missing PERL dependencies >>> ./Build installexes #installs all missing external programs >>> ./Build install #installs MAKER >>> ./Build status #Shows this status menu >>> >>> Other Commands: >>> ./Build repeatmasker #installs RepeatMasker (asks for RepBase) >>> ./Build blast #installs BLAST (NCBI BLAST+) >>> ./Build exonerate #installs Exonerate (v2 on UNIX / v1 on Mac >>> OSX) >>> ./Build snap #installs SNAP >>> ./Build augustus #installs Augustus >>> ./Build apollo #installs Apollo >>> ./Build gbrowse #installs GBrowse (must be root) >>> ./Build jbrowse #installs JBrowse (MAKER copy, not web >>> accecible) >>> ./Build webapollo #installs WebApollo (use maker2wap to create >>> DBs) >>> ./Build mpich2 #installs MPICH2 (but manual install >>> recommended) >>> >>> ~/software/maker/src$ sudo ./Build install >>> Building MAKER >>> Installing MAKER... >>> Building MAKER >>> Installing ~/software/maker/src/../perl/lib/MAKER/ConfigData.pm >>> >>> ~/software/maker/src$ maker -h >>> Can't locate MAKER/ConfigData.pm in @INC (@INC contains: >>> ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib >>> ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl >>> /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 >>> /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 >>> /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. >>> BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42. >>> >>> >>> _______________________________________________ >>> maker-devel mailing list >>> maker-devel at box290.bluehost.com >>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org >> >> Barry Moore >> Research Scientist >> Dept. of Human Genetics >> University of Utah >> Salt Lake City, UT 84112 >> -------------------------------------------- >> (801) 585-3543 >> >> >> >> > _______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.comhttp://box290.bluehost.com/mailman/listinfo/m aker-devel_yandell-lab.org -------------- next part -------------- An HTML attachment was scrubbed... URL: From charlos9 at gmail.com Wed Jan 22 18:34:10 2014 From: charlos9 at gmail.com (carlos vargas) Date: Thu, 23 Jan 2014 01:34:10 +0100 Subject: [maker-devel] Problem before running ab-initio predictors Message-ID: Hello, I finally was able to install maker with mpi support, however now I see a new error which I wasn't seeing before. Both for mpiexec and single maker runs I observe the following error just after it finishes running exonerate. Thank you for your time! Carlos deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation cleaning clusters.... total clusters:1 now processing 0 cleaning clusters.... total clusters:1 now processing 0 annotating transcripts Making transcripts ...processing 0 of 1 ERROR: Not a valid predictor in auto_annoator::get_pred_shot at /home/cvargas/maker/bin/../lib/maker/auto_annotator.pm line 2155. maker::auto_annotator::get_pred_shot(FastaSeq=HASH(0x3eb6920), ">2973", "/gnmP05/Carlos/mpiannotatetest/longest.maker.output/longest_d"..., undef, HASH(0x3eeb9f8), 0, "trnascan", HASH(0x3fb1f80), runlog=HASH(0x3ec6e38), ...) called at /home/cvargas/maker/bin/../lib/maker/auto_annotator.pm line 1923 maker::auto_annotator::run_it(ARRAY(0x3fab4d0), "/gnmP05/Carlos/mpiannotatetest/longest.maker.output/longest_d"..., FastaSeq=HASH(0x3eb6920), FastaSeq=HASH(0x3ed42d0), ">2973", "trnascan", HASH(0x3fb1f80)) called at /home/cvargas/maker/bin/../lib/maker/ auto_annotator.pm line 920 maker::auto_annotator::annotate_trans(FastaSeq=HASH(0x3ed42d0), FastaSeq=HASH(0x3eb6920), ">2973", 2973, ARRAY(0x3e818f8), "/gnmP05/Carlos/mpiannotatetest/longest.maker.output/longest_d"..., HASH(0x3fb1f80), runlog=HASH(0x3ec6e38)) called at /home/cvargas/maker/bin/../lib/Process/MpiChunk.pm line 3775 Process::MpiChunk::__ANON__() called at /home/cvargas/maker/bin/../lib/Error.pm line 415 eval {...} called at /home/cvargas/maker/bin/../lib/Error.pm line 407 Error::subs::try(CODE(0x3eb6d58), HASH(0x3eb74b8)) called at /home/cvargas/maker/bin/../lib/Process/MpiChunk.pm line 4215 Process::MpiChunk::_go(Process::MpiChunk=HASH(0x3e90218), "run", HASH(0x3e81748), 1, 4) called at /home/cvargas/maker/bin/../lib/Process/MpiChunk.pm line 341 Process::MpiChunk::run(Process::MpiChunk=HASH(0x3e90218), 0) called at /home/cvargas/maker/bin/../lib/Process/MpiChunk.pm line 357 Process::MpiChunk::run_all(Process::MpiChunk=HASH(0x3e90218), 0) called at /home/cvargas/maker/bin/../lib/Process/MpiTiers.pm line 287 Process::MpiTiers::run_all(Process::MpiTiers=HASH(0x3ea34b8), 0) called at /home/cvargas/maker/bin/../lib/Process/MpiTiers.pm line 287 Process::MpiTiers::run_all(Process::MpiTiers=HASH(0x3e733e8), 0) called at /home/cvargas/maker/bin/maker line 670 --> rank=NA, hostname=Ritchie ERROR: Failed while annotating transcripts ERROR: Chunk failed at level:1, tier_type:4 FAILED CONTIG:2973 ERROR: Chunk failed at level:6, tier_type:0 FAILED CONTIG:2973 examining contents of the fasta file and run log -------------- next part -------------- An HTML attachment was scrubbed... URL: From Ambrose.Andongabo at rothamsted.ac.uk Thu Jan 23 05:19:50 2014 From: Ambrose.Andongabo at rothamsted.ac.uk (Ambrose Andongabo (RRes-Roth)) Date: Thu, 23 Jan 2014 11:19:50 +0000 Subject: [maker-devel] MAKER annotation and Trinity output Message-ID: Dear all, I am using the latest version of MAKER and I keep on getting this error message when I activate fgenesh gene predictor in the maker_opts.ctl file. It runs successfully when using SNAP, GeneMark and AUGUSTUS. If I do not provide my ESTs evidence in the form of Trinity output, the pipeline will run successfully using all the four gene predictors including fgenesh. I wonder if someone encountered such a problem before #--------- command -------------# Widget::fgenesh: /home/data/MAKER_2.30/maker/bin/../lib/Widget/fgenesh/fgenesh_wrap /home/data/mg_annotation/fgenesh/fgenesh /home/data/mg_annotation/fgenesh/Fusarium /tmp/maker_cAePfY/0/164_0.557-1163.Fusarium.auto_annotator.fgenesh.fasta -exon_table:/tmp/maker_cAePfY/0/164_0.557-1163.Fusarium.auto_annotator.xdef.fgenesh > /tmp/maker_cAePfY/0/164_0.557-1163.Fusarium.auto_annotator.fgenesh #-------------------------------# ERROR: FGENESH Failed ERROR: FgenesH failed --> rank=NA, hostname=vnc.rothamsted.ac.uk ERROR: Failed while annotating transcripts ERROR: Chunk failed at level:1, tier_type:4 FAILED CONTIG:contig_1 ERROR: Chunk failed at level:6, tier_type:0 FAILED CONTIG:contig_1 examining contents of the fasta file and run log I will be grateful for your contribution Thanks Ambrose -- This message has been scanned for viruses and dangerous content by MailScanner, and we believe but do not warrant that this e-mail and any attachments thereto do not contain any viruses. However, you are fully responsible for performing any virus scanning. -------------- next part -------------- An HTML attachment was scrubbed... URL: From carson.holt at genetics.utah.edu Thu Jan 23 09:54:05 2014 From: carson.holt at genetics.utah.edu (Carson Holt) Date: Thu, 23 Jan 2014 15:54:05 +0000 Subject: [maker-devel] regarding MAKER In-Reply-To: <979080620.2022.1390472597931.JavaMail.root@mail.icgeb.res.in> References: <765683564.2020.1390472529829.JavaMail.root@mail.icgeb.res.in> <979080620.2022.1390472597931.JavaMail.root@mail.icgeb.res.in> Message-ID: Hi Nadita, You appear to be using input files with spaces in their names. It?s best to avoid whitespace in file names for linux based programs, as they will not always be interpreted correctly. Thanks, Carson On 1/23/14, 3:23 AM, "Nandita Pasari" wrote: > >Sir, > >I am trying to run maker from bin. >I was successful in running the example data but as I proceeded to a >second run from the bin folder I am getting an error as follows: > > >STATUS: Parsing control files... >STATUS: Processing and indexing input FASTA files... >mv: target `435.maker.output/mpi_blastdb/te_proteins%2Efasta.mpi.10.0/' >is not a directory >mv: target `435.maker.output/mpi_blastdb/te_proteins%2Efasta.mpi.10/' is >not a directory >ERROR: SplitDB not created correctly > > at /home/shams/Downloads/maker/bin/../lib/GI.pm line 1116. > GI::split_db("/home/shams/Downloads/maker/data/te_proteins.fasta", >"protein", 10, "/home/shams/Downloads/maker/bin/contig >435.maker.output/mpi_b"..., "C") called at maker line 518 >--> rank=NA, hostname=shams-ThinkCentre-M90p > >How can this be rectified? > >Nandita Pasari >Pre Doctoral Fellow >Synthetic Biology and Biofuels Group >ICGEB >New Delhi > From nandita at icgeb.res.in Thu Jan 23 04:23:17 2014 From: nandita at icgeb.res.in (Nandita Pasari) Date: Thu, 23 Jan 2014 15:53:17 +0530 (IST) Subject: [maker-devel] regarding MAKER In-Reply-To: <765683564.2020.1390472529829.JavaMail.root@mail.icgeb.res.in> Message-ID: <979080620.2022.1390472597931.JavaMail.root@mail.icgeb.res.in> Sir, I am trying to run maker from bin. I was successful in running the example data but as I proceeded to a second run from the bin folder I am getting an error as follows: STATUS: Parsing control files... STATUS: Processing and indexing input FASTA files... mv: target `435.maker.output/mpi_blastdb/te_proteins%2Efasta.mpi.10.0/' is not a directory mv: target `435.maker.output/mpi_blastdb/te_proteins%2Efasta.mpi.10/' is not a directory ERROR: SplitDB not created correctly at /home/shams/Downloads/maker/bin/../lib/GI.pm line 1116. GI::split_db("/home/shams/Downloads/maker/data/te_proteins.fasta", "protein", 10, "/home/shams/Downloads/maker/bin/contig 435.maker.output/mpi_b"..., "C") called at maker line 518 --> rank=NA, hostname=shams-ThinkCentre-M90p How can this be rectified? Nandita Pasari Pre Doctoral Fellow Synthetic Biology and Biofuels Group ICGEB New Delhi From carsonhh at gmail.com Thu Jan 23 11:51:50 2014 From: carsonhh at gmail.com (Carson Holt) Date: Thu, 23 Jan 2014 10:51:50 -0700 Subject: [maker-devel] Problem before running ab-initio predictors In-Reply-To: References: Message-ID: Could you make sure trna=0 is set in the maker_opt.ctl file, and leave that off for the time being. It is a new feature that was added since 2.28, and may be a little buggy. I?ll try and replicate the error here. Could you send me a copy of your maker_opts.ctl file. For the mean time just turn off the trna option and you should be able to run, you can always run with trna=1 later (even by itself as a separate run) without loosing anything. Thanks, Carson From: carlos vargas Date: Wednesday, January 22, 2014 at 5:34 PM To: "maker-devel at yandell-lab.org" Subject: [maker-devel] Problem before running ab-initio predictors Hello, I finally was able to install maker with mpi support, however now I see a new error which I wasn't seeing before. Both for mpiexec and single maker runs I observe the following error just after it finishes running exonerate. Thank you for your time! Carlos deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation cleaning clusters.... total clusters:1 now processing 0 cleaning clusters.... total clusters:1 now processing 0 annotating transcripts Making transcripts ...processing 0 of 1 ERROR: Not a valid predictor in auto_annoator::get_pred_shot at /home/cvargas/maker/bin/../lib/maker/auto_annotator.pm line 2155. maker::auto_annotator::get_pred_shot(FastaSeq=HASH(0x3eb6920), ">2973", "/gnmP05/Carlos/mpiannotatetest/longest.maker.output/longest_d"..., undef, HASH(0x3eeb9f8), 0, "trnascan", HASH(0x3fb1f80), runlog=HASH(0x3ec6e38), ...) called at /home/cvargas/maker/bin/../lib/maker/auto_annotator.pm line 1923 maker::auto_annotator::run_it(ARRAY(0x3fab4d0), "/gnmP05/Carlos/mpiannotatetest/longest.maker.output/longest_d"..., FastaSeq=HASH(0x3eb6920), FastaSeq=HASH(0x3ed42d0), ">2973", "trnascan", HASH(0x3fb1f80)) called at /home/cvargas/maker/bin/../lib/maker/auto_annotator.pm line 920 maker::auto_annotator::annotate_trans(FastaSeq=HASH(0x3ed42d0), FastaSeq=HASH(0x3eb6920), ">2973", 2973, ARRAY(0x3e818f8), "/gnmP05/Carlos/mpiannotatetest/longest.maker.output/longest_d"..., HASH(0x3fb1f80), runlog=HASH(0x3ec6e38)) called at /home/cvargas/maker/bin/../lib/Process/MpiChunk.pm line 3775 Process::MpiChunk::__ANON__() called at /home/cvargas/maker/bin/../lib/Error.pm line 415 eval {...} called at /home/cvargas/maker/bin/../lib/Error.pm line 407 Error::subs::try(CODE(0x3eb6d58), HASH(0x3eb74b8)) called at /home/cvargas/maker/bin/../lib/Process/MpiChunk.pm line 4215 Process::MpiChunk::_go(Process::MpiChunk=HASH(0x3e90218), "run", HASH(0x3e81748), 1, 4) called at /home/cvargas/maker/bin/../lib/Process/MpiChunk.pm line 341 Process::MpiChunk::run(Process::MpiChunk=HASH(0x3e90218), 0) called at /home/cvargas/maker/bin/../lib/Process/MpiChunk.pm line 357 Process::MpiChunk::run_all(Process::MpiChunk=HASH(0x3e90218), 0) called at /home/cvargas/maker/bin/../lib/Process/MpiTiers.pm line 287 Process::MpiTiers::run_all(Process::MpiTiers=HASH(0x3ea34b8), 0) called at /home/cvargas/maker/bin/../lib/Process/MpiTiers.pm line 287 Process::MpiTiers::run_all(Process::MpiTiers=HASH(0x3e733e8), 0) called at /home/cvargas/maker/bin/maker line 670 --> rank=NA, hostname=Ritchie ERROR: Failed while annotating transcripts ERROR: Chunk failed at level:1, tier_type:4 FAILED CONTIG:2973 ERROR: Chunk failed at level:6, tier_type:0 FAILED CONTIG:2973 examining contents of the fasta file and run log _______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org -------------- next part -------------- An HTML attachment was scrubbed... URL: From carsonhh at gmail.com Fri Jan 24 12:32:08 2014 From: carsonhh at gmail.com (Carson Holt) Date: Fri, 24 Jan 2014 11:32:08 -0700 Subject: [maker-devel] MAKER annotation and Trinity output Message-ID: Hi Ambrose, It is likely caused by an issue with hints being generated for Fgenesh, I?ve attached an updated module to be placed here ?> .../maker/lib/Widget/fgenesh.pm. I will also integrate this into the MAKER download. Thanks, Carson From: "Ambrose Andongabo (RRes-Roth)" Date: Thursday, January 23, 2014 at 4:19 AM To: "maker-devel at yandell-lab.org" Subject: [maker-devel] MAKER annotation and Trinity output Dear all, I am using the latest version of MAKER and I keep on getting this error message when I activate fgenesh gene predictor in the maker_opts.ctl file. It runs successfully when using SNAP, GeneMark and AUGUSTUS. If I do not provide my ESTs evidence in the form of Trinity output, the pipeline will run successfully using all the four gene predictors including fgenesh. I wonder if someone encountered such a problem before #--------- command -------------# Widget::fgenesh: /home/data/MAKER_2.30/maker/bin/../lib/Widget/fgenesh/fgenesh_wrap /home/data/mg_annotation/fgenesh/fgenesh /home/data/mg_annotation/fgenesh/Fusarium /tmp/maker_cAePfY/0/164_0.557-1163.Fusarium.auto_annotator.fgenesh.fasta -exon_table:/tmp/maker_cAePfY/0/164_0.557-1163.Fusarium.auto_annotator.xdef. fgenesh > /tmp/maker_cAePfY/0/164_0.557-1163.Fusarium.auto_annotator.fgenesh #-------------------------------# ERROR: FGENESH Failed ERROR: FgenesH failed --> rank=NA, hostname=vnc.rothamsted.ac.uk ERROR: Failed while annotating transcripts ERROR: Chunk failed at level:1, tier_type:4 FAILED CONTIG:contig_1 ERROR: Chunk failed at level:6, tier_type:0 FAILED CONTIG:contig_1 examining contents of the fasta file and run log I will be grateful for your contribution Thanks Ambrose -- This message has been scanned for viruses and dangerous content by MailScanner , and we believe but do not warrant that this e-mail and any attachments thereto do not contain any viruses. However, you are fully responsible for performing any virus scanning. _______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: fgenesh.pm Type: text/x-perl-script Size: 19742 bytes Desc: not available URL: From Ambrose.Andongabo at rothamsted.ac.uk Mon Jan 27 04:44:24 2014 From: Ambrose.Andongabo at rothamsted.ac.uk (Ambrose Andongabo (RRes-Roth)) Date: Mon, 27 Jan 2014 10:44:24 +0000 Subject: [maker-devel] Trinity and fgenesh wrapper for MAKER Message-ID: Dear Carson, Many thanks for the quick fix to the fgenesh.pm perl module in MAKER. I ran the annotation over the weekend and obtained the desired results. Thanks Ambrose -- This message has been scanned for viruses and dangerous content by MailScanner, and we believe but do not warrant that this e-mail and any attachments thereto do not contain any viruses. However, you are fully responsible for performing any virus scanning. -------------- next part -------------- An HTML attachment was scrubbed... URL: From Michael.Li3 at AGR.GC.CA Mon Jan 27 10:17:29 2014 From: Michael.Li3 at AGR.GC.CA (Li, Michael) Date: Mon, 27 Jan 2014 16:17:29 +0000 Subject: [maker-devel] Transcriptome Assmeblies for Protein Evidence Message-ID: <229AF11430CC544B8987653593A750A98765E327@ONOTTAXES3.AGR.GC.CA> Hi everyone, I've been tasked to run MAKER on a genome that we have recently sequenced and assembled de novo. Along with the genome, the transcriptome has also been assembled using SOAPdenovo. I've been told that we've experimented with different kmers, but I'm not sure which kmer is ideal for use. One kmer assembly has the highest N50 for contigs, while another has the highest N50 for scaffolds, but it comes with a lot of gaps. Would gaps impact how MAKER handles evidence alignment or the overall annotation? Or would either work well with MAKER? Thanks in advance! Michael Li Co-op Student From carsonhh at gmail.com Mon Jan 27 10:22:57 2014 From: carsonhh at gmail.com (Carson Holt) Date: Mon, 27 Jan 2014 09:22:57 -0700 Subject: [maker-devel] Transcriptome Assmeblies for Protein Evidence Message-ID: You should use the scaffolds. Large gaps will not affect the annotation and are common in the scaffolds of all newly assembled genomes. Thanks, Carson On 1/27/14, 9:17 AM, "Li, Michael" wrote: >Hi everyone, > >I've been tasked to run MAKER on a genome that we have recently sequenced >and assembled de novo. Along with the genome, the transcriptome has also >been assembled using SOAPdenovo. I've been told that we've experimented >with different kmers, but I'm not sure which kmer is ideal for use. > >One kmer assembly has the highest N50 for contigs, while another has the >highest N50 for scaffolds, but it comes with a lot of gaps. > >Would gaps impact how MAKER handles evidence alignment or the overall >annotation? Or would either work well with MAKER? > >Thanks in advance! > >Michael Li >Co-op Student > >_______________________________________________ >maker-devel mailing list >maker-devel at box290.bluehost.com >http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org From carsonhh at gmail.com Mon Jan 27 11:27:28 2014 From: carsonhh at gmail.com (Carson Holt) Date: Mon, 27 Jan 2014 10:27:28 -0700 Subject: [maker-devel] Trinity and fgenesh wrapper for MAKER In-Reply-To: References: Message-ID: Thanks for letting me know. I?m glad it?s working. ?Carson From: "Ambrose Andongabo (RRes-Roth)" Date: Monday, January 27, 2014 at 3:44 AM To: Carson Holt , "maker-devel at yandell-lab.org" Subject: Trinity and fgenesh wrapper for MAKER Dear Carson, Many thanks for the quick fix to the fgenesh.pm perl module in MAKER. I ran the annotation over the weekend and obtained the desired results. Thanks Ambrose -- This message has been scanned for viruses and dangerous content by MailScanner , and we believe but do not warrant that this e-mail and any attachments thereto do not contain any viruses. However, you are fully responsible for performing any virus scanning. -------------- next part -------------- An HTML attachment was scrubbed... URL: From carson.holt at genetics.utah.edu Mon Jan 27 12:29:21 2014 From: carson.holt at genetics.utah.edu (Carson Holt) Date: Mon, 27 Jan 2014 18:29:21 +0000 Subject: [maker-devel] MAKER failing In-Reply-To: References: Message-ID: You need to supply the captured STDERR from your maker run. The cause of any failure will be printed to the screen Thanks, Carson From: Seth Munholland > Date: Monday, January 27, 2014 at 11:24 AM To: > Subject: MAKER failing Hello Everyone, I recently installed MAKER 2.28 and the installation went smoothly. When I ran it on my assembly the first time I didn't properly configure the CTL files and so genemark and snap were not run (I didn't supply hmm links). After correcting this and running MAKER again my log file consists of nothing but STARTED...FAILED. I don't know what files would be useful to attach to help figure out the problem, so I'm starting with the CTL.log files I used and the resultant master_datastore_index.log file. Any input would be greatly appreciated. Seth Munholland, B.Sc. Department of Biological Sciences Rm. 304 Biology Building University of Windsor 401 Sunset Ave. N9B 3P4 T: (519) 253-3000 Ext: 4755 -------------- next part -------------- An HTML attachment was scrubbed... URL: From munholl at uwindsor.ca Mon Jan 27 12:24:17 2014 From: munholl at uwindsor.ca (Seth Munholland) Date: Mon, 27 Jan 2014 13:24:17 -0500 Subject: [maker-devel] MAKER failing Message-ID: Hello Everyone, I recently installed MAKER 2.28 and the installation went smoothly. When I ran it on my assembly the first time I didn't properly configure the CTL files and so genemark and snap were not run (I didn't supply hmm links). After correcting this and running MAKER again my log file consists of nothing but STARTED...FAILED. I don't know what files would be useful to attach to help figure out the problem, so I'm starting with the CTL.log files I used and the resultant master_datastore_index.log file. Any input would be greatly appreciated. Seth Munholland, B.Sc. Department of Biological Sciences Rm. 304 Biology Building University of Windsor 401 Sunset Ave. N9B 3P4 T: (519) 253-3000 Ext: 4755 -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: maker_bopts.log Type: text/x-log Size: 1412 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: maker_exe.log Type: text/x-log Size: 1308 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: maker_opts.log Type: text/x-log Size: 4711 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: OAC_Rex_AllPathsLG_Scaffolds_master_datastore_index.log Type: text/x-log Size: 2434292 bytes Desc: not available URL: From sbrubaker at solazyme.com Mon Jan 27 13:27:41 2014 From: sbrubaker at solazyme.com (Shane Brubaker) Date: Mon, 27 Jan 2014 19:27:41 +0000 Subject: [maker-devel] Introduction Message-ID: <61D01ACB70C1E141A150BA9F586D5BFA50EFC711@EXCHANGE-MB01.internal.solazyme.com> Hello, I'd like to introduce you to Mike D'Eletto. He is developing an open-source deep functional annotation pipeline to run numerous downstream program on predicted genes. I was wondering if this could be something interesting to bundle with MAKER. I met a person, I forget their name, at PAG 2014 who was involved with MAKER, and we discussed it briefly. I think it could be a beneficial idea. Thanks! - Shane Brubaker -------------- next part -------------- An HTML attachment was scrubbed... URL: From bmoore at genetics.utah.edu Mon Jan 27 19:54:41 2014 From: bmoore at genetics.utah.edu (Barry Moore) Date: Tue, 28 Jan 2014 01:54:41 +0000 Subject: [maker-devel] Introduction In-Reply-To: <61D01ACB70C1E141A150BA9F586D5BFA50EFC711@EXCHANGE-MB01.internal.solazyme.com> References: <61D01ACB70C1E141A150BA9F586D5BFA50EFC711@EXCHANGE-MB01.internal.solazyme.com> Message-ID: <6D6E50E3-0FAD-4E49-A1CA-6650C035E964@genetics.utah.edu> Thanks Shane and hi Mike. Sounds cool - is there a link to the tool? B Barry Moore Research Scientist Dept. Human Genetics University of Utah On Jan 27, 2014, at 12:30 PM, "Shane Brubaker" > wrote: Hello, I?d like to introduce you to Mike D?Eletto. He is developing an open-source deep functional annotation pipeline to run numerous downstream program on predicted genes. I was wondering if this could be something interesting to bundle with MAKER. I met a person, I forget their name, at PAG 2014 who was involved with MAKER, and we discussed it briefly. I think it could be a beneficial idea. Thanks! - Shane Brubaker _______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org -------------- next part -------------- An HTML attachment was scrubbed... URL: From jcjb at cam.ac.uk Tue Jan 28 06:14:03 2014 From: jcjb at cam.ac.uk (Jenny Barna) Date: Tue, 28 Jan 2014 12:14:03 +0000 (GMT) Subject: [maker-devel] WARNING: Multiple MAKER processes... Message-ID: We have had maker since 2010. Maker 2.10 and 2.11 compiled with mpich2 were and still are working with mpi as far as I can tell. These have a binary called mpi_maker. I have kept the same mpich2 installed to try to make sure things stay working. It has been picked up by subsequent maker builds. It is mpich2-1.2.1p1 . I have seen the posting by Marc P. Hoeppner on 10/26/13 about 'WARNING: Multiple MAKER processes have been started in the same directory.' which is the same warning I have had. Trying all my previous installations I now see this is happening in all 2.2? distributions I have. Versions 2.10/2.11 are not doing this. It is happening with 2.2?/2.30p where no separate mpi_maker binary is made. Trying new mpich 3.0.4 as advised in the posting by Marc has not worked. It appears to build but fails at once with severe mpi errors. Tests included with that mpi distro worked. I am aware the maker WARNING behaviour is indicative of mpi types having become mixed but have not been able to correct. Jenny Barna | jcjb at cam.ac.uk Bioinformatics and Computational Biology | computing.bio.cam.ac.uk Dept of Biochemistry | +44 1223 333644 80 Tennis Court Road, Cambridge, CB2 1GA, UK From sbrubaker at solazyme.com Tue Jan 28 11:34:16 2014 From: sbrubaker at solazyme.com (Shane Brubaker) Date: Tue, 28 Jan 2014 17:34:16 +0000 Subject: [maker-devel] Introduction In-Reply-To: <6D6E50E3-0FAD-4E49-A1CA-6650C035E964@genetics.utah.edu> References: <61D01ACB70C1E141A150BA9F586D5BFA50EFC711@EXCHANGE-MB01.internal.solazyme.com> <6D6E50E3-0FAD-4E49-A1CA-6650C035E964@genetics.utah.edu> Message-ID: <61D01ACB70C1E141A150BA9F586D5BFA50EFCB79@EXCHANGE-MB01.internal.solazyme.com> He has not put it out yet but can send you a link once it's ready. :) From: Barry Moore [mailto:bmoore at genetics.utah.edu] Sent: Monday, January 27, 2014 5:55 PM To: Shane Brubaker Cc: maker-devel at yandell-lab.org; Mike D'Eletto (mikedeletto at gmail.com) Subject: Re: [maker-devel] Introduction Thanks Shane and hi Mike. Sounds cool - is there a link to the tool? B Barry Moore Research Scientist Dept. Human Genetics University of Utah On Jan 27, 2014, at 12:30 PM, "Shane Brubaker" > wrote: Hello, I'd like to introduce you to Mike D'Eletto. He is developing an open-source deep functional annotation pipeline to run numerous downstream program on predicted genes. I was wondering if this could be something interesting to bundle with MAKER. I met a person, I forget their name, at PAG 2014 who was involved with MAKER, and we discussed it briefly. I think it could be a beneficial idea. Thanks! - Shane Brubaker _______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org -------------- next part -------------- An HTML attachment was scrubbed... URL: From carsonhh at gmail.com Tue Jan 28 11:58:03 2014 From: carsonhh at gmail.com (Carson Holt) Date: Tue, 28 Jan 2014 10:58:03 -0700 Subject: [maker-devel] WARNING: Multiple MAKER processes... In-Reply-To: References: Message-ID: Hi Jenny, There are three locations that are key to running with MPI. 1. The location of mpicc 2. the location of mpi.h 3. the location of mpiexec These files are common to all MPI flavors, but are incompatible between MPI flavor and version. For example, if you use mpicc to compile with the wrong mpi.h, it will fail. If you compile and then try and execute with the wrong mpiexec, it will fail. So you need to make sure all 3 are coming from the same version when running maker or any MPI program. A common mistake is to just call mpiexec direct on the command line. Your system may in fact call the wrong mpiexec when you do that (use ?which mpiexec? to see which one is being called when you just type mpiexec). Also when configuring MAKER, manually review the path to mpicc and mpi.h given during the ?perl Build.PL? configuration step to make sure they are coming from the same version and flavor of MPI. Also there is no mpi_maker. The standard 'maker' command will now be MPI enabled if you say ?yes' to the 'configure for MPI' question during the 'perl Build.PL' step of the install. I just installed MPICH3 and ran MAKER on a test job. Here is what I did step-by-step ?> #first install MPICH3 wget http://www.mpich.org/static/downloads/3.0.4/mpich-3.0.4.tar.gz tar -zxvf mpich-3.0.4.tar.gz cd mpich-3.0.4 #note that I configure with shared libraries enabled *this is not the default!! #also set prefix to wherever you want it installed ./configure --enable-shared=yes --prefix=/usr/local/mpich3 make make install #now cofigure MAKER cd /usr/local/maker/src perl Build.PL #say yes to MPI question #give full path to mpicc ?> /usr/local/mpich3/bin/mpicc #give full path to mpi.h containing directory ?> /usr/local/mpich3/include ./Build ./Build install #test using full paths to executables /usr/local/mpich3/bin/mpiexec -n 3 /usr/local/maker/bin/maker In addition, use MAKER 2.30. It has the best MPI performance of any version of MAKER. Also you can use OpenMPI rather than MPICH if you choose. It actually scales better than MPICH. The main difference is that you must set LD_PRELOAD to the location of libmpi.so before even trying to install MAKER. It must also be set before running MAKER (or any program that uses OpenMPI's shared libraries), so it's best just to add it to your ~/.bash_profile. (i.e. export LD_PRELOAD=/usr/local/openmpi/lib/libmpi.so). Note however that having this set will cause errors for MPICH, so be careful if switching back and forth between MPI flavors. Thanks, Carson On 1/28/14, 5:14 AM, "Jenny Barna" wrote: > >We have had maker since 2010. Maker 2.10 and 2.11 compiled with mpich2 >were and still are working with mpi as far as I can tell. These have >a binary called mpi_maker. > >I have kept the same mpich2 installed to try to make sure things stay >working. It has been picked up by subsequent maker builds. >It is mpich2-1.2.1p1 . > >I have seen the posting by Marc P. Hoeppner on 10/26/13 about >'WARNING: Multiple MAKER processes have been started in the same >directory.' which is the same warning I have had. > >Trying all my previous installations I now see this is happening in all >2.2? distributions I have. Versions 2.10/2.11 are not doing this. >It is happening with 2.2?/2.30p where no separate mpi_maker binary is >made. > >Trying new mpich 3.0.4 as advised in the posting by Marc has not worked. >It appears to build but fails at once with severe mpi errors. Tests >included >with that mpi distro worked. > >I am aware the maker WARNING behaviour is indicative of mpi types having >become mixed but have not been able to correct. > > > >Jenny Barna | jcjb at cam.ac.uk >Bioinformatics and Computational Biology | computing.bio.cam.ac.uk >Dept of Biochemistry | +44 1223 333644 >80 Tennis Court Road, Cambridge, CB2 1GA, UK > > >_______________________________________________ >maker-devel mailing list >maker-devel at box290.bluehost.com >http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org From barry.utah at gmail.com Wed Jan 29 21:58:37 2014 From: barry.utah at gmail.com (Barry Moore) Date: Wed, 29 Jan 2014 20:58:37 -0700 Subject: [maker-devel] Genome Annotation Library (Version 0.2.2) Message-ID: The Sequence Ontology is please to announce the release of the Genome Annotation Library (GAL) Version 0.2.2. GAL is a library of Perl modules that makes working with sequence features in GFF3/GVF files straight forward and intuitive. GAL also provides numerous parser classes for converting other formats to GFF3 and makes writing new parsers easy. GAL takes advantage of the ontology based relationships captured in SO-based sequence feature data to allow users to easily traverse the relationships between features in a GFF3 file. In addition to the GAL programming library many scripts utilizing the library are included as well as several stand-alone scripts for working with GFF/GVF and other genomic dataset. Updates in this version include: -Adding bin/footprint script -Adding gal_indexer script -Adding bin/gene_CDS_footprint script -New CPAN style html docs for GAL -Updates to gtf2gff3 -Adding warnings when mrna.pm can not return CDS or protein sequence -Added progress counter to Storage::SQLite::load_files -Adding --template option to gff_tool -Adding templates/gff_tool_gvf_example2.tt -Adding gal_remove_transcripts and gal_gff_tool -Adding fix_gvf function to bin/gff_tool -Added --clean to gal_protein_genes -Adding GAL::Base::open_file For more information, to access the GAL docs and to download GAL code please visit: http://www.sequenceontology.org/software/GAL.html Barry Moore Research Scientist Dept. of Human Genetics Dept. of Biomedical Informatics University of Utah Salt Lake City, UT 84112 -------------------------------------------- (801) 585-3543 -------------- next part -------------- An HTML attachment was scrubbed... URL: From S.M.Schmidt at uva.nl Thu Jan 30 08:30:18 2014 From: S.M.Schmidt at uva.nl (Schmidt, Sarah) Date: Thu, 30 Jan 2014 14:30:18 +0000 Subject: [maker-devel] Maker fails to annotate large contigs Message-ID: Dear Carson, When running maker on my genome assembly (roughly 60 Mb), it keeps failing the largest contigs with either error: DIED RANK 3:4:0:3 DIED COUNT 2 or DIED RANK 4:4:0:0 DIED COUNT 1 DIED RANK 4 DIED COUNT 1. Do you know what might be the problem? I am using Maker 2.28 with MPI support. Thanks in advance, Sarah -------------- next part -------------- An HTML attachment was scrubbed... URL: From carsonhh at gmail.com Thu Jan 30 09:04:28 2014 From: carsonhh at gmail.com (Carson Holt) Date: Thu, 30 Jan 2014 08:04:28 -0700 Subject: [maker-devel] Maker fails to annotate large contigs Message-ID: What are the errors from the STDERR printed to screen? That will tell you the specifics of why it is failing. Redirect to a file to capture it and I can take a look as well. Note you may need to set a higher number of retries to get it to run again. Thanks, Carson From: "Schmidt, Sarah" Date: Thursday, January 30, 2014 at 7:30 AM To: "maker-devel at yandell-lab.org" Subject: [maker-devel] Maker fails to annotate large contigs Dear Carson, When running maker on my genome assembly (roughly 60 Mb), it keeps failing the largest contigs with either error: DIED RANK 3:4:0:3 DIED COUNT 2 or DIED RANK 4:4:0:0 DIED COUNT 1 DIED RANK 4 DIED COUNT 1. Do you know what might be the problem? I am using Maker 2.28 with MPI support. Thanks in advance, Sarah _______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org -------------- next part -------------- An HTML attachment was scrubbed... URL: From darasappan at gmail.com Thu Jan 30 12:18:48 2014 From: darasappan at gmail.com (dhivya arasappan) Date: Thu, 30 Jan 2014 12:18:48 -0600 Subject: [maker-devel] maker annotation with cufflinks output Message-ID: <516896DE-1ACB-460B-9842-90E12CB72343@gmail.com> Hello, I am trying to annotate a 200 mb plant genome for which I have a very good assembly. I tried to denovo assemble RNA-seq data using trinity and ran maker using my genome assembly and the trinity results. I did not get as many transcripts as expected, around 10,000 transcripts. So, I decided to try a different approach. I did a genome assisted assembly of the RNA-seq data using tophat/cufflinks. This pipeline generated 21,000 genes, 29,000 transcripts. I then ran maker using my genome assembly and the cufflinks result. I get much less number of transcripts as a result. If cufflinks found 29000 transcripts by mapping to the genome, I'm confused as to why maker is not finding the same. Any suggestions would be appreciated. Thanks Dhivya From dence at genetics.utah.edu Thu Jan 30 14:51:10 2014 From: dence at genetics.utah.edu (Daniel Ence) Date: Thu, 30 Jan 2014 20:51:10 +0000 Subject: [maker-devel] maker annotation with cufflinks output In-Reply-To: <516896DE-1ACB-460B-9842-90E12CB72343@gmail.com> References: <516896DE-1ACB-460B-9842-90E12CB72343@gmail.com> Message-ID: Hi Dhivya, I think there a few numbers that could be helpful to understand what's happening here. How many transcripts did Trinity assembly the RNA-seq data into? Also, you had 29,000 transcripts from cufflinks, but fewer from MAKER when you gave it the cufflinks data. How many transcripts did MAKER identify with the cufflinks data? Did you still get more than the 10,000 transcripts that you found with just the Trinity data? A key part of MAKER's approach to genome annotation that might be affecting it's performance is that it only annotates a gene where there is both evidence (like your RNA-seq data) and an ab-initio prediction. If a prediction is unsupported by the evidence, then MAKER won't annotate a gene and if evidence aligns where there's no prediction, MAKER won't annotate a gene either. What ab-initio predictors are you using and have they been trained specific genome? You can force MAKER to automatically promote evidence alignments to a gene model by setting the est2genome option to 1, but that will usually give you many false positives. Try rerunning it with either the Trinity data or the Cufflinks data and with est2genome set to 1, and let us know how that affects the MAKER results. Thanks, Daniel Daniel Ence Graduate Student Eccles Institute of Human Genetics University of Utah 15 North 2030 East, Room 2100 Salt Lake City, UT 84112-5330 ________________________________________ From: maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of dhivya arasappan [darasappan at gmail.com] Sent: Thursday, January 30, 2014 11:18 AM To: maker-devel at yandell-lab.org Subject: [maker-devel] maker annotation with cufflinks output Hello, I am trying to annotate a 200 mb plant genome for which I have a very good assembly. I tried to denovo assemble RNA-seq data using trinity and ran maker using my genome assembly and the trinity results. I did not get as many transcripts as expected, around 10,000 transcripts. So, I decided to try a different approach. I did a genome assisted assembly of the RNA-seq data using tophat/cufflinks. This pipeline generated 21,000 genes, 29,000 transcripts. I then ran maker using my genome assembly and the cufflinks result. I get much less number of transcripts as a result. If cufflinks found 29000 transcripts by mapping to the genome, I'm confused as to why maker is not finding the same. Any suggestions would be appreciated. Thanks Dhivya _______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org From darasappan at gmail.com Thu Jan 30 15:00:07 2014 From: darasappan at gmail.com (dhivya arasappan) Date: Thu, 30 Jan 2014 15:00:07 -0600 Subject: [maker-devel] maker annotation with cufflinks output Message-ID: <8B185515-42FE-4EB2-8275-FE090541E49B@gmail.com> Hello, I am trying to annotate a 200 mb plant genome for which I have a very good assembly. I tried to denovo assemble RNA-seq data using trinity and ran maker using my genome assembly and the trinity results. I did not get as many transcripts as expected, around 10,000 transcripts. So, I decided to try a different approach. I did a genome assisted assembly of the RNA-seq data using tophat/cufflinks. This pipeline generated 21,000 genes, 29,000 transcripts. I then ran maker using my genome assembly and the cufflinks result. I get much less number of transcripts as a result. If cufflinks found 29000 transcripts by mapping to the genome, I'm confused as to why maker is not finding the same. Any suggestions would be appreciated. Thanks Dhivya From carsonhh at gmail.com Thu Jan 30 15:14:53 2014 From: carsonhh at gmail.com (Carson Holt) Date: Thu, 30 Jan 2014 14:14:53 -0700 Subject: [maker-devel] maker annotation with cufflinks output In-Reply-To: References: <516896DE-1ACB-460B-9842-90E12CB72343@gmail.com> Message-ID: What you get back from cufflinks should not necessarily be considered a transcript count, and you should always expect the count given by cufflinks to be high relative to assembly methods like trinity (especially in plants). This is because repetitive elements, spurious alignments, and pseudogenes will all inflate the count because it is an alignment based method which can be more sensitive but will also generate a lot of false positives. Fortunately the false positives will mostly be singe exon results and will be filtered out by maker. Also your mRNA-seq data from cufflinks will contribute to hints that can generate genes in the absence of an ab-intio gene prediction, but if the gene finder doesn?t think the hints make sense it will ignore them. So a lot of cufflinks results that don?t make sense with respect to ORF etc., will fall into the category of being ignored. In addition, you should try running your pipeline through CEGMA (http://korflab.ucdavis.edu/datasets/cegma/) to identify the expected completeness of the genome. For example if a genome of 70% completeness then you only expect to recover 70% of the genes. I believe CEGMA can also be run online from the iPlant discovery environment and iPlant atmosphere images. Also make sure you are including proteins with your MAKER run, as not all genes will be expressed, so mRNAseq will only capture a portion of the genes and that portion can be as low as 50%. Thanks, Carson On 1/30/14, 1:51 PM, "Daniel Ence" wrote: >Hi Dhivya, > >I think there a few numbers that could be helpful to understand what's >happening here. > >How many transcripts did Trinity assembly the RNA-seq data into? Also, >you had 29,000 transcripts from cufflinks, but fewer from MAKER when you >gave it the cufflinks data. How many transcripts did MAKER identify with >the cufflinks data? Did you still get more than the 10,000 transcripts >that you found with just the Trinity data? > >A key part of MAKER's approach to genome annotation that might be >affecting it's performance is that it only annotates a gene where there >is both evidence (like your RNA-seq data) and an ab-initio prediction. If >a prediction is unsupported by the evidence, then MAKER won't annotate a >gene and if evidence aligns where there's no prediction, MAKER won't >annotate a gene either. What ab-initio predictors are you using and have >they been trained specific genome? > >You can force MAKER to automatically promote evidence alignments to a >gene model by setting the est2genome option to 1, but that will usually >give you many false positives. > >Try rerunning it with either the Trinity data or the Cufflinks data and >with est2genome set to 1, and let us know how that affects the MAKER >results. > >Thanks, >Daniel > >Daniel Ence >Graduate Student >Eccles Institute of Human Genetics >University of Utah >15 North 2030 East, Room 2100 >Salt Lake City, UT 84112-5330 >________________________________________ >From: maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of >dhivya arasappan [darasappan at gmail.com] >Sent: Thursday, January 30, 2014 11:18 AM >To: maker-devel at yandell-lab.org >Subject: [maker-devel] maker annotation with cufflinks output > >Hello, > >I am trying to annotate a 200 mb plant genome for which I have a very >good assembly. > >I tried to denovo assemble RNA-seq data using trinity and ran maker >using my genome assembly and the trinity results. I did not get as >many transcripts as expected, around 10,000 transcripts. > >So, I decided to try a different approach. I did a genome assisted >assembly of the RNA-seq data using tophat/cufflinks. This pipeline >generated 21,000 genes, 29,000 transcripts. I then ran maker using my >genome assembly and the cufflinks result. I get much less number of >transcripts as a result. > >If cufflinks found 29000 transcripts by mapping to the genome, I'm >confused as to why maker is not finding the same. > >Any suggestions would be appreciated. > >Thanks >Dhivya > > >_______________________________________________ >maker-devel mailing list >maker-devel at box290.bluehost.com >http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org > >_______________________________________________ >maker-devel mailing list >maker-devel at box290.bluehost.com >http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org From ranjani at uga.edu Thu Jan 30 18:59:56 2014 From: ranjani at uga.edu (Sivaranjani Namasivayam) Date: Fri, 31 Jan 2014 00:59:56 +0000 Subject: [maker-devel] maker annotation with cufflinks output In-Reply-To: References: <516896DE-1ACB-460B-9842-90E12CB72343@gmail.com> , Message-ID: Hi All, This is a problem I have been having for quite some time; maker predicts much lower number of genes or proteins than in my evidence RNA-seq transcripts. My genome is not repetitive and is atleast 90% complete. I tried setting est2genome to 1, but that still doesn't seem to increase the predicted gene set too much. If I input ~13000 genes(21000 transcripts) as evidence I get predictions of ~5000 genes(6000 transcripts). I ran MAKER again with the transcripts that didn't have a gene model predicted in the first run, and this time MAKER predicted gene models for ~20-30% of those transcripts. Is there anything that can be done to increase the predicted gene count? Thanks, Ranjani ________________________________________ From: maker-devel on behalf of Carson Holt Sent: Thursday, January 30, 2014 4:14 PM To: Daniel Ence; dhivya arasappan; maker-devel at yandell-lab.org Subject: Re: [maker-devel] maker annotation with cufflinks output What you get back from cufflinks should not necessarily be considered a transcript count, and you should always expect the count given by cufflinks to be high relative to assembly methods like trinity (especially in plants). This is because repetitive elements, spurious alignments, and pseudogenes will all inflate the count because it is an alignment based method which can be more sensitive but will also generate a lot of false positives. Fortunately the false positives will mostly be singe exon results and will be filtered out by maker. Also your mRNA-seq data from cufflinks will contribute to hints that can generate genes in the absence of an ab-intio gene prediction, but if the gene finder doesn?t think the hints make sense it will ignore them. So a lot of cufflinks results that don?t make sense with respect to ORF etc., will fall into the category of being ignored. In addition, you should try running your pipeline through CEGMA (http://korflab.ucdavis.edu/datasets/cegma/) to identify the expected completeness of the genome. For example if a genome of 70% completeness then you only expect to recover 70% of the genes. I believe CEGMA can also be run online from the iPlant discovery environment and iPlant atmosphere images. Also make sure you are including proteins with your MAKER run, as not all genes will be expressed, so mRNAseq will only capture a portion of the genes and that portion can be as low as 50%. Thanks, Carson On 1/30/14, 1:51 PM, "Daniel Ence" wrote: >Hi Dhivya, > >I think there a few numbers that could be helpful to understand what's >happening here. > >How many transcripts did Trinity assembly the RNA-seq data into? Also, >you had 29,000 transcripts from cufflinks, but fewer from MAKER when you >gave it the cufflinks data. How many transcripts did MAKER identify with >the cufflinks data? Did you still get more than the 10,000 transcripts >that you found with just the Trinity data? > >A key part of MAKER's approach to genome annotation that might be >affecting it's performance is that it only annotates a gene where there >is both evidence (like your RNA-seq data) and an ab-initio prediction. If >a prediction is unsupported by the evidence, then MAKER won't annotate a >gene and if evidence aligns where there's no prediction, MAKER won't >annotate a gene either. What ab-initio predictors are you using and have >they been trained specific genome? > >You can force MAKER to automatically promote evidence alignments to a >gene model by setting the est2genome option to 1, but that will usually >give you many false positives. > >Try rerunning it with either the Trinity data or the Cufflinks data and >with est2genome set to 1, and let us know how that affects the MAKER >results. > >Thanks, >Daniel > >Daniel Ence >Graduate Student >Eccles Institute of Human Genetics >University of Utah >15 North 2030 East, Room 2100 >Salt Lake City, UT 84112-5330 >________________________________________ >From: maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of >dhivya arasappan [darasappan at gmail.com] >Sent: Thursday, January 30, 2014 11:18 AM >To: maker-devel at yandell-lab.org >Subject: [maker-devel] maker annotation with cufflinks output > >Hello, > >I am trying to annotate a 200 mb plant genome for which I have a very >good assembly. > >I tried to denovo assemble RNA-seq data using trinity and ran maker >using my genome assembly and the trinity results. I did not get as >many transcripts as expected, around 10,000 transcripts. > >So, I decided to try a different approach. I did a genome assisted >assembly of the RNA-seq data using tophat/cufflinks. This pipeline >generated 21,000 genes, 29,000 transcripts. I then ran maker using my >genome assembly and the cufflinks result. I get much less number of >transcripts as a result. > >If cufflinks found 29000 transcripts by mapping to the genome, I'm >confused as to why maker is not finding the same. > >Any suggestions would be appreciated. > >Thanks >Dhivya > > >_______________________________________________ >maker-devel mailing list >maker-devel at box290.bluehost.com >http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org > >_______________________________________________ >maker-devel mailing list >maker-devel at box290.bluehost.com >http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org _______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org From carsonhh at gmail.com Fri Jan 31 01:20:40 2014 From: carsonhh at gmail.com (Carson Holt) Date: Fri, 31 Jan 2014 00:20:40 -0700 Subject: [maker-devel] maker annotation with cufflinks output In-Reply-To: References: <516896DE-1ACB-460B-9842-90E12CB72343@gmail.com> Message-ID: So just a few suggestions. If you are getting fewer genes than you expect, that is usually an indication that the evidence provided is insufficient, the gene predictors need to be retrained, the repeat masking is insufficient, or the assembly has problems. Here is more explanation on each point: 1. In addition to any mRNA/EST data, you should provided full proteomes from a minimum of two species as closely related as possible, and perhaps a comprehensive database such as UniProt/Swissprot. Note that based on experience the comprehensive database cannot substitute for a related species proteome, they can complement it, but not substitute for it. So you need to supply full proteomes from something. mRNA/EST data is not sufficient by itself, so make sure you have enough protein evidence. 2. All models are ultimately generated by the predictors (maker doesn?t generate these), so care should be taken to train the predictors as best as possible. Also train at least two predictors (SNAP and Augustus are recommended). If they are both well trained, then they will be in general concordance with one another. If they are not well trained, then each program will produce very different models. So visually inspecting their concordance can give you an idea of if they need to be retrained. 3. More often than not, poor predictor performance is actually the result of repeat related complications. Many genomes that at first may seem repeat poor may actually contain novel repeats that can affect the performance of the gene predictors. If you are getting fewer genes than you expect or ab initio models are not in concordance from two independent predictors, run something like RepeatScout to generate species specific libraries. This may seem minor, but I have seen predictions go from apparently random to textbook perfect just by producing a species specific library of novel repeats. 4. You can?t have gene models if you don?t have open reading frames to translate through. Also gene predictors need sequence upstream and downstream of genes to work correctly, so if contigs are too short they won?t be useful for prediction even if the sum of the contigs is large enough to encompass the whole genome. In general any contig smaller than 10kb is not annotatable, so you should aim for as high an N50 value as possible. Annotating a new genome is sort of like a moving target. No two organisms are alike, so you usually have to to identify what deficiencies exist based on preliminary runs and then correct for them in subsequent runs. Thanks, Carson On 1/30/14, 5:59 PM, "Sivaranjani Namasivayam" wrote: >Hi All, > >This is a problem I have been having for quite some time; maker predicts >much lower number of genes or proteins than in my evidence RNA-seq >transcripts. My genome is not repetitive and is atleast 90% complete. > >I tried setting est2genome to 1, but that still doesn't seem to increase >the predicted gene set too much. If I input ~13000 genes(21000 >transcripts) as evidence I get predictions of ~5000 genes(6000 >transcripts). >I ran MAKER again with the transcripts that didn't have a gene model >predicted in the first run, and this time MAKER predicted gene models for >~20-30% of those transcripts. > >Is there anything that can be done to increase the predicted gene count? > >Thanks, >Ranjani >________________________________________ >From: maker-devel on behalf of >Carson Holt >Sent: Thursday, January 30, 2014 4:14 PM >To: Daniel Ence; dhivya arasappan; maker-devel at yandell-lab.org >Subject: Re: [maker-devel] maker annotation with cufflinks output > >What you get back from cufflinks should not necessarily be considered a >transcript count, and you should always expect the count given by >cufflinks to be high relative to assembly methods like trinity (especially >in plants). This is because repetitive elements, spurious alignments, and >pseudogenes will all inflate the count because it is an alignment based >method which can be more sensitive but will also generate a lot of false >positives. Fortunately the false positives will mostly be singe exon >results and will be filtered out by maker. Also your mRNA-seq data from >cufflinks will contribute to hints that can generate genes in the absence >of an ab-intio gene prediction, but if the gene finder doesn?t think the >hints make sense it will ignore them. So a lot of cufflinks results that >don?t make sense with respect to ORF etc., will fall into the category of >being ignored. > >In addition, you should try running your pipeline through CEGMA >(http://korflab.ucdavis.edu/datasets/cegma/) to identify the expected >completeness of the genome. For example if a genome of 70% completeness >then you only expect to recover 70% of the genes. I believe CEGMA can also >be run online from the iPlant discovery environment and iPlant atmosphere >images. Also make sure you are including proteins with your MAKER run, >as not all genes will be expressed, so mRNAseq will only capture a portion >of the genes and that portion can be as low as 50%. > >Thanks, >Carson > > >On 1/30/14, 1:51 PM, "Daniel Ence" wrote: > >>Hi Dhivya, >> >>I think there a few numbers that could be helpful to understand what's >>happening here. >> >>How many transcripts did Trinity assembly the RNA-seq data into? Also, >>you had 29,000 transcripts from cufflinks, but fewer from MAKER when you >>gave it the cufflinks data. How many transcripts did MAKER identify with >>the cufflinks data? Did you still get more than the 10,000 transcripts >>that you found with just the Trinity data? >> >>A key part of MAKER's approach to genome annotation that might be >>affecting it's performance is that it only annotates a gene where there >>is both evidence (like your RNA-seq data) and an ab-initio prediction. If >>a prediction is unsupported by the evidence, then MAKER won't annotate a >>gene and if evidence aligns where there's no prediction, MAKER won't >>annotate a gene either. What ab-initio predictors are you using and have >>they been trained specific genome? >> >>You can force MAKER to automatically promote evidence alignments to a >>gene model by setting the est2genome option to 1, but that will usually >>give you many false positives. >> >>Try rerunning it with either the Trinity data or the Cufflinks data and >>with est2genome set to 1, and let us know how that affects the MAKER >>results. >> >>Thanks, >>Daniel >> >>Daniel Ence >>Graduate Student >>Eccles Institute of Human Genetics >>University of Utah >>15 North 2030 East, Room 2100 >>Salt Lake City, UT 84112-5330 >>________________________________________ >>From: maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of >>dhivya arasappan [darasappan at gmail.com] >>Sent: Thursday, January 30, 2014 11:18 AM >>To: maker-devel at yandell-lab.org >>Subject: [maker-devel] maker annotation with cufflinks output >> >>Hello, >> >>I am trying to annotate a 200 mb plant genome for which I have a very >>good assembly. >> >>I tried to denovo assemble RNA-seq data using trinity and ran maker >>using my genome assembly and the trinity results. I did not get as >>many transcripts as expected, around 10,000 transcripts. >> >>So, I decided to try a different approach. I did a genome assisted >>assembly of the RNA-seq data using tophat/cufflinks. This pipeline >>generated 21,000 genes, 29,000 transcripts. I then ran maker using my >>genome assembly and the cufflinks result. I get much less number of >>transcripts as a result. >> >>If cufflinks found 29000 transcripts by mapping to the genome, I'm >>confused as to why maker is not finding the same. >> >>Any suggestions would be appreciated. >> >>Thanks >>Dhivya >> >> >>_______________________________________________ >>maker-devel mailing list >>maker-devel at box290.bluehost.com >>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org >> >>_______________________________________________ >>maker-devel mailing list >>maker-devel at box290.bluehost.com >>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org > > > >_______________________________________________ >maker-devel mailing list >maker-devel at box290.bluehost.com >http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org From darasappan at gmail.com Thu Jan 30 15:22:14 2014 From: darasappan at gmail.com (dhivya arasappan) Date: Thu, 30 Jan 2014 15:22:14 -0600 Subject: [maker-devel] maker annotation with cufflinks output In-Reply-To: References: <516896DE-1ACB-460B-9842-90E12CB72343@gmail.com> Message-ID: <3D1D5626-3130-4C4A-B808-FE2366A42048@gmail.com> Thank you for this information. Our server is currently down, so I'm unable to get you all the statistics you've asked for. Once the server is back up, I'll email again with more numbers But I can tell you that I did run cegma first and got around 92% completeness (full genes) and 98% completeness (partial genes). This is why I'm even more puzzled by maker results. Thanks again Dhivya On Jan 30, 2014, at 3:14 PM, Carson Holt wrote: > What you get back from cufflinks should not necessarily be > considered a > transcript count, and you should always expect the count given by > cufflinks to be high relative to assembly methods like trinity > (especially > in plants). This is because repetitive elements, spurious > alignments, and > pseudogenes will all inflate the count because it is an alignment > based > method which can be more sensitive but will also generate a lot of > false > positives. Fortunately the false positives will mostly be singe exon > results and will be filtered out by maker. Also your mRNA-seq data > from > cufflinks will contribute to hints that can generate genes in the > absence > of an ab-intio gene prediction, but if the gene finder doesn?t think > the > hints make sense it will ignore them. So a lot of cufflinks results > that > don?t make sense with respect to ORF etc., will fall into the > category of > being ignored. > > In addition, you should try running your pipeline through CEGMA > (http://korflab.ucdavis.edu/datasets/cegma/) to identify the expected > completeness of the genome. For example if a genome of 70% > completeness > then you only expect to recover 70% of the genes. I believe CEGMA > can also > be run online from the iPlant discovery environment and iPlant > atmosphere > images. Also make sure you are including proteins with your MAKER > run, > as not all genes will be expressed, so mRNAseq will only capture a > portion > of the genes and that portion can be as low as 50%. > > Thanks, > Carson > > > On 1/30/14, 1:51 PM, "Daniel Ence" wrote: > >> Hi Dhivya, >> >> I think there a few numbers that could be helpful to understand >> what's >> happening here. >> >> How many transcripts did Trinity assembly the RNA-seq data into? >> Also, >> you had 29,000 transcripts from cufflinks, but fewer from MAKER >> when you >> gave it the cufflinks data. How many transcripts did MAKER identify >> with >> the cufflinks data? Did you still get more than the 10,000 >> transcripts >> that you found with just the Trinity data? >> >> A key part of MAKER's approach to genome annotation that might be >> affecting it's performance is that it only annotates a gene where >> there >> is both evidence (like your RNA-seq data) and an ab-initio >> prediction. If >> a prediction is unsupported by the evidence, then MAKER won't >> annotate a >> gene and if evidence aligns where there's no prediction, MAKER won't >> annotate a gene either. What ab-initio predictors are you using and >> have >> they been trained specific genome? >> >> You can force MAKER to automatically promote evidence alignments to a >> gene model by setting the est2genome option to 1, but that will >> usually >> give you many false positives. >> >> Try rerunning it with either the Trinity data or the Cufflinks data >> and >> with est2genome set to 1, and let us know how that affects the MAKER >> results. >> >> Thanks, >> Daniel >> >> Daniel Ence >> Graduate Student >> Eccles Institute of Human Genetics >> University of Utah >> 15 North 2030 East, Room 2100 >> Salt Lake City, UT 84112-5330 >> ________________________________________ >> From: maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of >> dhivya arasappan [darasappan at gmail.com] >> Sent: Thursday, January 30, 2014 11:18 AM >> To: maker-devel at yandell-lab.org >> Subject: [maker-devel] maker annotation with cufflinks output >> >> Hello, >> >> I am trying to annotate a 200 mb plant genome for which I have a very >> good assembly. >> >> I tried to denovo assemble RNA-seq data using trinity and ran maker >> using my genome assembly and the trinity results. I did not get as >> many transcripts as expected, around 10,000 transcripts. >> >> So, I decided to try a different approach. I did a genome assisted >> assembly of the RNA-seq data using tophat/cufflinks. This pipeline >> generated 21,000 genes, 29,000 transcripts. I then ran maker using >> my >> genome assembly and the cufflinks result. I get much less number of >> transcripts as a result. >> >> If cufflinks found 29000 transcripts by mapping to the genome, I'm >> confused as to why maker is not finding the same. >> >> Any suggestions would be appreciated. >> >> Thanks >> Dhivya >> >> >> _______________________________________________ >> maker-devel mailing list >> maker-devel at box290.bluehost.com >> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org >> >> _______________________________________________ >> maker-devel mailing list >> maker-devel at box290.bluehost.com >> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org > > From sujaikumar at gmail.com Fri Jan 31 02:39:26 2014 From: sujaikumar at gmail.com (Sujai) Date: Fri, 31 Jan 2014 08:39:26 +0000 Subject: [maker-devel] maker annotation with cufflinks output In-Reply-To: References: <516896DE-1ACB-460B-9842-90E12CB72343@gmail.com> Message-ID: Many thanks, Carson - for this fabulous post describing general principles. You've hinted at some of these tips in other posts, but it's great to have them in one place. Thanks especially for the kinds of things that make a big difference (point 3 below). More such tips always welcome! Best wishes, and thanks for an amazing piece of kit. - Sujai On 31 January 2014 07:20, Carson Holt wrote: > So just a few suggestions. If you are getting fewer genes than you expect, > that is usually an indication that the evidence provided is insufficient, > the gene predictors need to be retrained, the repeat masking is > insufficient, or the assembly has problems. > > Here is more explanation on each point: > > 1. In addition to any mRNA/EST data, you should provided full proteomes > from a minimum of two species as closely related as possible, and perhaps > a comprehensive database such as UniProt/Swissprot. Note that based on > experience the comprehensive database cannot substitute for a related > species proteome, they can complement it, but not substitute for it. So > you need to supply full proteomes from something. mRNA/EST data is not > sufficient by itself, so make sure you have enough protein evidence. > > 2. All models are ultimately generated by the predictors (maker doesn't > generate these), so care should be taken to train the predictors as best > as possible. Also train at least two predictors (SNAP and Augustus are > recommended). If they are both well trained, then they will be in general > concordance with one another. If they are not well trained, then each > program will produce very different models. So visually inspecting their > concordance can give you an idea of if they need to be retrained. > > 3. More often than not, poor predictor performance is actually the result > of repeat related complications. Many genomes that at first may seem > repeat poor may actually contain novel repeats that can affect the > performance of the gene predictors. If you are getting fewer genes than > you expect or ab initio models are not in concordance from two independent > predictors, run something like RepeatScout to generate species specific > libraries. This may seem minor, but I have seen predictions go from > apparently random to textbook perfect just by producing a species specific > library of novel repeats. > > 4. You can't have gene models if you don't have open reading frames to > translate through. Also gene predictors need sequence upstream and > downstream of genes to work correctly, so if contigs are too short they > won't be useful for prediction even if the sum of the contigs is large > enough to encompass the whole genome. In general any contig smaller than > 10kb is not annotatable, so you should aim for as high an N50 value as > possible. > > > Annotating a new genome is sort of like a moving target. No two organisms > are alike, so you usually have to to identify what deficiencies exist > based on preliminary runs and then correct for them in subsequent runs. > > Thanks, > Carson > > > > On 1/30/14, 5:59 PM, "Sivaranjani Namasivayam" wrote: > >>Hi All, >> >>This is a problem I have been having for quite some time; maker predicts >>much lower number of genes or proteins than in my evidence RNA-seq >>transcripts. My genome is not repetitive and is atleast 90% complete. >> >>I tried setting est2genome to 1, but that still doesn't seem to increase >>the predicted gene set too much. If I input ~13000 genes(21000 >>transcripts) as evidence I get predictions of ~5000 genes(6000 >>transcripts). >>I ran MAKER again with the transcripts that didn't have a gene model >>predicted in the first run, and this time MAKER predicted gene models for >>~20-30% of those transcripts. >> >>Is there anything that can be done to increase the predicted gene count? >> >>Thanks, >>Ranjani >>________________________________________ >>From: maker-devel on behalf of >>Carson Holt >>Sent: Thursday, January 30, 2014 4:14 PM >>To: Daniel Ence; dhivya arasappan; maker-devel at yandell-lab.org >>Subject: Re: [maker-devel] maker annotation with cufflinks output >> >>What you get back from cufflinks should not necessarily be considered a >>transcript count, and you should always expect the count given by >>cufflinks to be high relative to assembly methods like trinity (especially >>in plants). This is because repetitive elements, spurious alignments, and >>pseudogenes will all inflate the count because it is an alignment based >>method which can be more sensitive but will also generate a lot of false >>positives. Fortunately the false positives will mostly be singe exon >>results and will be filtered out by maker. Also your mRNA-seq data from >>cufflinks will contribute to hints that can generate genes in the absence >>of an ab-intio gene prediction, but if the gene finder doesn't think the >>hints make sense it will ignore them. So a lot of cufflinks results that >>don't make sense with respect to ORF etc., will fall into the category of >>being ignored. >> >>In addition, you should try running your pipeline through CEGMA >>(http://korflab.ucdavis.edu/datasets/cegma/) to identify the expected >>completeness of the genome. For example if a genome of 70% completeness >>then you only expect to recover 70% of the genes. I believe CEGMA can also >>be run online from the iPlant discovery environment and iPlant atmosphere >>images. Also make sure you are including proteins with your MAKER run, >>as not all genes will be expressed, so mRNAseq will only capture a portion >>of the genes and that portion can be as low as 50%. >> >>Thanks, >>Carson >> >> >>On 1/30/14, 1:51 PM, "Daniel Ence" wrote: >> >>>Hi Dhivya, >>> >>>I think there a few numbers that could be helpful to understand what's >>>happening here. >>> >>>How many transcripts did Trinity assembly the RNA-seq data into? Also, >>>you had 29,000 transcripts from cufflinks, but fewer from MAKER when you >>>gave it the cufflinks data. How many transcripts did MAKER identify with >>>the cufflinks data? Did you still get more than the 10,000 transcripts >>>that you found with just the Trinity data? >>> >>>A key part of MAKER's approach to genome annotation that might be >>>affecting it's performance is that it only annotates a gene where there >>>is both evidence (like your RNA-seq data) and an ab-initio prediction. If >>>a prediction is unsupported by the evidence, then MAKER won't annotate a >>>gene and if evidence aligns where there's no prediction, MAKER won't >>>annotate a gene either. What ab-initio predictors are you using and have >>>they been trained specific genome? >>> >>>You can force MAKER to automatically promote evidence alignments to a >>>gene model by setting the est2genome option to 1, but that will usually >>>give you many false positives. >>> >>>Try rerunning it with either the Trinity data or the Cufflinks data and >>>with est2genome set to 1, and let us know how that affects the MAKER >>>results. >>> >>>Thanks, >>>Daniel >>> >>>Daniel Ence >>>Graduate Student >>>Eccles Institute of Human Genetics >>>University of Utah >>>15 North 2030 East, Room 2100 >>>Salt Lake City, UT 84112-5330 >>>________________________________________ >>>From: maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of >>>dhivya arasappan [darasappan at gmail.com] >>>Sent: Thursday, January 30, 2014 11:18 AM >>>To: maker-devel at yandell-lab.org >>>Subject: [maker-devel] maker annotation with cufflinks output >>> >>>Hello, >>> >>>I am trying to annotate a 200 mb plant genome for which I have a very >>>good assembly. >>> >>>I tried to denovo assemble RNA-seq data using trinity and ran maker >>>using my genome assembly and the trinity results. I did not get as >>>many transcripts as expected, around 10,000 transcripts. >>> >>>So, I decided to try a different approach. I did a genome assisted >>>assembly of the RNA-seq data using tophat/cufflinks. This pipeline >>>generated 21,000 genes, 29,000 transcripts. I then ran maker using my >>>genome assembly and the cufflinks result. I get much less number of >>>transcripts as a result. >>> >>>If cufflinks found 29000 transcripts by mapping to the genome, I'm >>>confused as to why maker is not finding the same. >>> >>>Any suggestions would be appreciated. >>> >>>Thanks >>>Dhivya >>> >>> >>>_______________________________________________ >>>maker-devel mailing list >>>maker-devel at box290.bluehost.com >>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org >>> >>>_______________________________________________ >>>maker-devel mailing list >>>maker-devel at box290.bluehost.com >>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org >> >> >> >>_______________________________________________ >>maker-devel mailing list >>maker-devel at box290.bluehost.com >>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org > > > > _______________________________________________ > maker-devel mailing list > maker-devel at box290.bluehost.com > http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org From sbrubaker at solazyme.com Wed Jan 8 11:10:30 2014 From: sbrubaker at solazyme.com (Shane Brubaker) Date: Wed, 8 Jan 2014 18:10:30 +0000 Subject: [maker-devel] Plastid annotation Message-ID: <61D01ACB70C1E141A150BA9F586D5BFA50EF7ADE@EXCHANGE-MB01.internal.solazyme.com> Hi, we are embarking on a project to annotate several plastids. We want to do all the work in-house though (i.e. we don't want to use a web service) and we would like to use MAKER if possible. As you know the plastid is essentially bacterial, so I get the impression that it would not be appropriate to use Augustus or SNAP on it, is that correct? Is it possible instead to use Glimmer within MAKER? I was wondering if anyone has suggestions on 1) how to use MAKER with organellar genomes and 2) other general organellar annotation piplelines that people have found useful (and useable) that are downloadable to a local installation. Thanks, Shane Brubaker -------------- next part -------------- An HTML attachment was scrubbed... URL: From michael.s.campbell1 at gmail.com Wed Jan 8 13:51:03 2014 From: michael.s.campbell1 at gmail.com (Michael Campbell) Date: Wed, 8 Jan 2014 13:51:03 -0700 Subject: [maker-devel] FW: extract repeats from maker output In-Reply-To: <7A60AB257EFF2B48B1F4C814817EA05365EDC871@mxb2.hg.genetics.utah.edu> References: <7A60AB257EFF2B48B1F4C814817EA05365EDC871@mxb2.hg.genetics.utah.edu> Message-ID: Hi Stefan, MAKER does write the repeatmasker output to the final gff3 file. However, to save space and prevent redundancy in the case of nested or overlapping repeats the repeat regions are collapsed and named after the longest repeat contributing to the repeat region. This means that the portion of the genome being masked is easy to calculate, but the length of the masked regions reported in the MAKER output will non always represent the length of individual repetitive elements. To get the true length distribution you could run repeat masker on the genome outside of MAKER or look for the repeatmasker output in the void directories in the datastore for each scaffold. Also make sure that you are using the most recent version of MAKER. There was one recent bug fix that affected the repeatmaksker output that was written to the gff3 file that resulted, in some cases, in an underestimation of the portion of the genome that was masked prior to annotation. I've copied this to the MAKER dev list just in case anyone else has additional insights. Mike > > Dear Mark Yandell, > > I wanted to ask if it's possible to extract a file with all repeats found > from the maker output? > > I would like to see how much of the genome is repeats and check their > lengths distribution. > > All the best, > Stefan Prost > > > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From dence at genetics.utah.edu Wed Jan 8 16:44:10 2014 From: dence at genetics.utah.edu (Daniel Ence) Date: Wed, 8 Jan 2014 23:44:10 +0000 Subject: [maker-devel] Plastid annotation In-Reply-To: <61D01ACB70C1E141A150BA9F586D5BFA50EF7ADE@EXCHANGE-MB01.internal.solazyme.com> References: <61D01ACB70C1E141A150BA9F586D5BFA50EF7ADE@EXCHANGE-MB01.internal.solazyme.com> Message-ID: Hi Shane, I'm not familiar with anyone using MAKER to annotate organellar genomes. My guess is that there might be a more specialized pipeline for this purpose. Glimmer isn't integrated into MAKER, but if you can get a gff3 file from it, you can pass those predictions to MAKER. The only difference between passing predictions and running it within MAKER is that MAKER will generate and pass "hints" based on the blast alignments to its internal predictors. MAKER can't do that with predictions generated externally. Thanks, Daniel Daniel Ence Graduate Student Eccles Institute of Human Genetics University of Utah 15 North 2030 East, Room 2100 Salt Lake City, UT 84112-5330 ________________________________ From: maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of Shane Brubaker [sbrubaker at solazyme.com] Sent: Wednesday, January 08, 2014 11:10 AM To: maker-devel at yandell-lab.org Cc: Aren Ewing Subject: [maker-devel] Plastid annotation Hi, we are embarking on a project to annotate several plastids. We want to do all the work in-house though (i.e. we don?t want to use a web service) and we would like to use MAKER if possible. As you know the plastid is essentially bacterial, so I get the impression that it would not be appropriate to use Augustus or SNAP on it, is that correct? Is it possible instead to use Glimmer within MAKER? I was wondering if anyone has suggestions on 1) how to use MAKER with organellar genomes and 2) other general organellar annotation piplelines that people have found useful (and useable) that are downloadable to a local installation. Thanks, Shane Brubaker -------------- next part -------------- An HTML attachment was scrubbed... URL: From sbrubaker at solazyme.com Wed Jan 8 16:47:30 2014 From: sbrubaker at solazyme.com (Shane Brubaker) Date: Wed, 8 Jan 2014 23:47:30 +0000 Subject: [maker-devel] Plastid annotation In-Reply-To: References: <61D01ACB70C1E141A150BA9F586D5BFA50EF7ADE@EXCHANGE-MB01.internal.solazyme.com> Message-ID: <61D01ACB70C1E141A150BA9F586D5BFA50EF7E00@EXCHANGE-MB01.internal.solazyme.com> Thanks very much for the information! From: Daniel Ence [mailto:dence at genetics.utah.edu] Sent: Wednesday, January 08, 2014 3:44 PM To: Shane Brubaker; maker-devel at yandell-lab.org Cc: Aren Ewing Subject: RE: Plastid annotation Hi Shane, I'm not familiar with anyone using MAKER to annotate organellar genomes. My guess is that there might be a more specialized pipeline for this purpose. Glimmer isn't integrated into MAKER, but if you can get a gff3 file from it, you can pass those predictions to MAKER. The only difference between passing predictions and running it within MAKER is that MAKER will generate and pass "hints" based on the blast alignments to its internal predictors. MAKER can't do that with predictions generated externally. Thanks, Daniel Daniel Ence Graduate Student Eccles Institute of Human Genetics University of Utah 15 North 2030 East, Room 2100 Salt Lake City, UT 84112-5330 ________________________________ From: maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of Shane Brubaker [sbrubaker at solazyme.com] Sent: Wednesday, January 08, 2014 11:10 AM To: maker-devel at yandell-lab.org Cc: Aren Ewing Subject: [maker-devel] Plastid annotation Hi, we are embarking on a project to annotate several plastids. We want to do all the work in-house though (i.e. we don't want to use a web service) and we would like to use MAKER if possible. As you know the plastid is essentially bacterial, so I get the impression that it would not be appropriate to use Augustus or SNAP on it, is that correct? Is it possible instead to use Glimmer within MAKER? I was wondering if anyone has suggestions on 1) how to use MAKER with organellar genomes and 2) other general organellar annotation piplelines that people have found useful (and useable) that are downloadable to a local installation. Thanks, Shane Brubaker -------------- next part -------------- An HTML attachment was scrubbed... URL: From amelia.ireland at gmod.org Thu Jan 9 14:15:03 2014 From: amelia.ireland at gmod.org (Amelia Ireland) Date: Thu, 9 Jan 2014 13:15:03 -0800 Subject: [maker-devel] GMOD in San Diego: PAG XXII and GMOD meeting Message-ID: Greetings, GMODders! If you're going to be in San Diego for PAG next week, we've put together a guide to the GMOD sessions at PAG, as well as a selection of content from GMOD users. You can find it on the GMOD website at http://gmod.org/wiki/PAG Please come along to the GMOD sessions and poster and introduce yourself and your project -- we would love to hear what you're doing with GMOD software! If you want to come to the GMOD Community Meeting on Jan 16 and 17, there is still time to register, but please do so ASAP. The agenda and registration link are on the wiki: http://gmod.org/wiki/Jan_2014_GMOD_Meeting Thanks! -- Amelia Ireland GMOD Community Support Generic Model Organism Database project http://gmod.org || @gmodproject -------------- next part -------------- An HTML attachment was scrubbed... URL: From mikael.durling at slu.se Fri Jan 10 02:48:49 2014 From: mikael.durling at slu.se (=?iso-8859-1?Q?Mikael_Brandstr=F6m_Durling?=) Date: Fri, 10 Jan 2014 09:48:49 +0000 Subject: [maker-devel] ncRNA support in maker Message-ID: Hi Carson and other maker developers, I was reading the source code of the latest maker release and noted several references to ncRNAs, snoscan and trnascan. Can these be incorporated into the normal annotation workflow? If so, are there any instructions available for that? best regards, Mikael Durling -------------- next part -------------- A non-text attachment was scrubbed... Name: signature.asc Type: application/pgp-signature Size: 496 bytes Desc: Message signed with OpenPGP using GPGMail URL: From carsonhh at gmail.com Fri Jan 10 14:03:25 2014 From: carsonhh at gmail.com (Carson Holt) Date: Fri, 10 Jan 2014 14:03:25 -0700 Subject: [maker-devel] ncRNA support in maker Message-ID: Hi Mikael, The options are part of the new MAKER-P integration (http://www.plantphysiol.org/content/early/2013/12/06/pp.113.230144.abstrac t). Additional documentation/tutorials will be forthcoming - probably in a nice wiki page as part of the upcoming GMOD Malaysia courses in February or alternatively with the annual GMOD summer school. The tRNA option is easy enough to turn on (just set trna=1 in the maker_opts.ctl file). Thanks, Carson On 1/10/14, 2:48 AM, "Mikael Brandstr?m Durling" wrote: >Hi Carson and other maker developers, > >I was reading the source code of the latest maker release and noted >several references to ncRNAs, snoscan and trnascan. Can these be >incorporated into the normal annotation workflow? If so, are there any >instructions available for that? > >best regards, >Mikael Durling >_______________________________________________ >maker-devel mailing list >maker-devel at box290.bluehost.com >http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org From saneasheikh at gmail.com Mon Jan 13 02:17:25 2014 From: saneasheikh at gmail.com (Sanea Sheikh) Date: Mon, 13 Jan 2014 10:17:25 +0100 Subject: [maker-devel] Problem with re-annotation Message-ID: Hello I am using Maker to annotate a genome for which I only have EST data and some protein data. I ran Maker once using this EST and protein data (est2genome=1, protein2genome=1). I had the Maker output. I combined all the GFF files for all the contigs. I used the combined GFF file to train SNAP which gave me a .hmm file. Now I modified the Maker opts control file. I provided the hmm file in snap_hmm. I set est2genome=0 and protein2genome=0. I ran Maker again assuming that now I have trained the gene predictor and I would have better annotations. But now the output file that I get does not have Maker annotation. I have attached the control files and the output file for the re-run so you can have a look and let me know what I am doing wrong in order to re-annotate the genome using the output from the previous run. Sanea -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: concatenated_gff_run1.gff Type: application/octet-stream Size: 8158525 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: Run1maker_opts.ctl Type: application/octet-stream Size: 4683 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: Run2maker_opts.ctl Type: application/octet-stream Size: 4748 bytes Desc: not available URL: From charlos9 at gmail.com Mon Jan 13 13:00:12 2014 From: charlos9 at gmail.com (carlos vargas) Date: Mon, 13 Jan 2014 21:00:12 +0100 Subject: [maker-devel] Problem installing maker Message-ID: Hello, I have been trying to install maker but I've been facing several issues. After installing all of the prerequisites I ran perl Build.PL and ./Build install. No issues were detected. Afterwards I tried to test maker by simply executing maker -h and got the following error: Can't locate MAKER/ConfigData.pm in @INC (@INC contains: ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42. I found a similar thread which suggested reinstalling (which I did) but I still face the same issue. The full messages are below. Thank you for your help! Carlos ~/software/maker/src$ sudo perl Build.PL MAKER supports distributed parallelization via MPI. Would you like to configure MAKER for MPI (This requires that you have an MPI client installed)? [N ] N Would you like to install the web interface to MAKER (MWAS) on this machine This requires that you be logged in as root or use sudo for './Build install'? [N ] N Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'MAKER' version '2.3' The file 'Build' has been created for you to finish installing MAKER. ============================================================================== STATUS MAKER 2.3 ============================================================================== PERL Dependencies: VERIFIED External Programs: VERIFIED External C Libraries: VERIFIED MPI SUPPORT: DISABLED MWAS Web Interface: DISABLED MAKER PACKAGE: CONFIGURATION OK Important Commands: ./Build installdeps #installs missing PERL dependencies ./Build installexes #installs all missing external programs ./Build install #installs MAKER ./Build status #Shows this status menu Other Commands: ./Build repeatmasker #installs RepeatMasker (asks for RepBase) ./Build blast #installs BLAST (NCBI BLAST+) ./Build exonerate #installs Exonerate (v2 on UNIX / v1 on Mac OSX) ./Build snap #installs SNAP ./Build augustus #installs Augustus ./Build apollo #installs Apollo ./Build gbrowse #installs GBrowse (must be root) ./Build jbrowse #installs JBrowse (MAKER copy, not web accecible) ./Build webapollo #installs WebApollo (use maker2wap to create DBs) ./Build mpich2 #installs MPICH2 (but manual install recommended) ~/software/maker/src$ sudo ./Build install Building MAKER Installing MAKER... Building MAKER Installing ~/software/maker/src/../perl/lib/MAKER/ConfigData.pm ~/software/maker/src$ maker -h Can't locate MAKER/ConfigData.pm in @INC (@INC contains: ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42. -------------- next part -------------- An HTML attachment was scrubbed... URL: From carsonhh at gmail.com Mon Jan 13 13:06:13 2014 From: carsonhh at gmail.com (Carson Holt) Date: Mon, 13 Jan 2014 12:06:13 -0800 Subject: [maker-devel] Problem installing maker In-Reply-To: References: Message-ID: You are running maker from .../maker/src/bin/. That is just the source code. The scripts for execution will be in .../maker/bin/ after installation. You need to use those. Thanks, Carson > On Jan 13, 2014, at 12:00 PM, carlos vargas wrote: > > Hello, > > I have been trying to install maker but I've been facing several issues. After installing all of the prerequisites I ran perl Build.PL and ./Build install. No issues were detected. Afterwards I tried to test maker by simply executing maker -h and got the following error: > > Can't locate MAKER/ConfigData.pm in @INC (@INC contains: ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. > BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42. > > I found a similar thread which suggested reinstalling (which I did) but I still face the same issue. The full messages are below. > > > Thank you for your help! > > Carlos > > > ~/software/maker/src$ sudo perl Build.PL > > MAKER supports distributed parallelization via MPI. > Would you like to configure MAKER for MPI (This > requires that you have an MPI client installed)? [N ] > N > > Would you like to install the web interface to MAKER (MWAS) on this machine > This requires that you be logged in as root or use sudo for './Build install'? [N ] > N > Created MYMETA.yml and MYMETA.json > Creating new 'Build' script for 'MAKER' version '2.3' > > > The file 'Build' has been created for you to finish installing MAKER. > > > ============================================================================== > STATUS MAKER 2.3 > ============================================================================== > PERL Dependencies: VERIFIED > External Programs: VERIFIED > External C Libraries: VERIFIED > MPI SUPPORT: DISABLED > MWAS Web Interface: DISABLED > MAKER PACKAGE: CONFIGURATION OK > > > Important Commands: > ./Build installdeps #installs missing PERL dependencies > ./Build installexes #installs all missing external programs > ./Build install #installs MAKER > ./Build status #Shows this status menu > > Other Commands: > ./Build repeatmasker #installs RepeatMasker (asks for RepBase) > ./Build blast #installs BLAST (NCBI BLAST+) > ./Build exonerate #installs Exonerate (v2 on UNIX / v1 on Mac OSX) > ./Build snap #installs SNAP > ./Build augustus #installs Augustus > ./Build apollo #installs Apollo > ./Build gbrowse #installs GBrowse (must be root) > ./Build jbrowse #installs JBrowse (MAKER copy, not web accecible) > ./Build webapollo #installs WebApollo (use maker2wap to create DBs) > ./Build mpich2 #installs MPICH2 (but manual install recommended) > > ~/software/maker/src$ sudo ./Build install > Building MAKER > Installing MAKER... > Building MAKER > Installing ~/software/maker/src/../perl/lib/MAKER/ConfigData.pm > > ~/software/maker/src$ maker -h > Can't locate MAKER/ConfigData.pm in @INC (@INC contains: ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. > BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42. > > > _______________________________________________ > maker-devel mailing list > maker-devel at box290.bluehost.com > http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org From barry.utah at gmail.com Mon Jan 13 14:21:22 2014 From: barry.utah at gmail.com (Barry Moore) Date: Mon, 13 Jan 2014 14:21:22 -0700 Subject: [maker-devel] Problem installing maker In-Reply-To: References: Message-ID: Hi Carlos, Did you run ./Build install? If not do that first and then you want to run the copy of maker in ~/software/maker/bin/maker. B On Jan 13, 2014, at 1:00 PM, carlos vargas wrote: > Hello, > > I have been trying to install maker but I've been facing several issues. After installing all of the prerequisites I ran perl Build.PL and ./Build install. No issues were detected. Afterwards I tried to test maker by simply executing maker -h and got the following error: > > Can't locate MAKER/ConfigData.pm in @INC (@INC contains: ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. > BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42. > > I found a similar thread which suggested reinstalling (which I did) but I still face the same issue. The full messages are below. > > > Thank you for your help! > > Carlos > > > ~/software/maker/src$ sudo perl Build.PL > > MAKER supports distributed parallelization via MPI. > Would you like to configure MAKER for MPI (This > requires that you have an MPI client installed)? [N ] > N > > Would you like to install the web interface to MAKER (MWAS) on this machine > This requires that you be logged in as root or use sudo for './Build install'? [N ] > N > Created MYMETA.yml and MYMETA.json > Creating new 'Build' script for 'MAKER' version '2.3' > > > The file 'Build' has been created for you to finish installing MAKER. > > > ============================================================================== > STATUS MAKER 2.3 > ============================================================================== > PERL Dependencies: VERIFIED > External Programs: VERIFIED > External C Libraries: VERIFIED > MPI SUPPORT: DISABLED > MWAS Web Interface: DISABLED > MAKER PACKAGE: CONFIGURATION OK > > > Important Commands: > ./Build installdeps #installs missing PERL dependencies > ./Build installexes #installs all missing external programs > ./Build install #installs MAKER > ./Build status #Shows this status menu > > Other Commands: > ./Build repeatmasker #installs RepeatMasker (asks for RepBase) > ./Build blast #installs BLAST (NCBI BLAST+) > ./Build exonerate #installs Exonerate (v2 on UNIX / v1 on Mac OSX) > ./Build snap #installs SNAP > ./Build augustus #installs Augustus > ./Build apollo #installs Apollo > ./Build gbrowse #installs GBrowse (must be root) > ./Build jbrowse #installs JBrowse (MAKER copy, not web accecible) > ./Build webapollo #installs WebApollo (use maker2wap to create DBs) > ./Build mpich2 #installs MPICH2 (but manual install recommended) > > ~/software/maker/src$ sudo ./Build install > Building MAKER > Installing MAKER... > Building MAKER > Installing ~/software/maker/src/../perl/lib/MAKER/ConfigData.pm > > ~/software/maker/src$ maker -h > Can't locate MAKER/ConfigData.pm in @INC (@INC contains: ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. > BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42. > > > _______________________________________________ > maker-devel mailing list > maker-devel at box290.bluehost.com > http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org Barry Moore Research Scientist Dept. of Human Genetics University of Utah Salt Lake City, UT 84112 -------------------------------------------- (801) 585-3543 -------------- next part -------------- An HTML attachment was scrubbed... URL: From carsonhh at gmail.com Mon Jan 13 17:39:19 2014 From: carsonhh at gmail.com (Carson Holt) Date: Mon, 13 Jan 2014 17:39:19 -0700 Subject: [maker-devel] Problem with re-annotation In-Reply-To: References: Message-ID: Hi Sanea, There are no snap calls in your results. It?s as if SNAP never even ran. Did you capture STDERR from your second run? If so can you send it to me. I just want to see if it even shows SNAP as having run in the progress reports. Thanks, Carson From: Sanea Sheikh Date: Monday, January 13, 2014 at 2:17 AM To: Subject: [maker-devel] Problem with re-annotation Hello I am using Maker to annotate a genome for which I only have EST data and some protein data. I ran Maker once using this EST and protein data (est2genome=1, protein2genome=1). I had the Maker output. I combined all the GFF files for all the contigs. I used the combined GFF file to train SNAP which gave me a .hmm file. Now I modified the Maker opts control file. I provided the hmm file in snap_hmm. I set est2genome=0 and protein2genome=0. I ran Maker again assuming that now I have trained the gene predictor and I would have better annotations. But now the output file that I get does not have Maker annotation. I have attached the control files and the output file for the re-run so you can have a look and let me know what I am doing wrong in order to re-annotate the genome using the output from the previous run. Sanea _______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org -------------- next part -------------- An HTML attachment was scrubbed... URL: From carson.holt at genetics.utah.edu Tue Jan 14 11:14:00 2014 From: carson.holt at genetics.utah.edu (Carson Holt) Date: Tue, 14 Jan 2014 18:14:00 +0000 Subject: [maker-devel] Issues regarding maker In-Reply-To: <7A60AB257EFF2B48B1F4C814817EA05365EE0D6E@mxb2.hg.genetics.utah.edu> References: <1766640308.998.1389701368895.JavaMail.root@mail.icgeb.res.in> <7A60AB257EFF2B48B1F4C814817EA05365EE0D6E@mxb2.hg.genetics.utah.edu> Message-ID: Hi Nandita, Check that you do not have an error like an extra space or character when you add it to your PATH. Also you must either ?source? the modified ./bashrc or restart your terminal for changes to the PATH environmental variable to take effect. You can check the contents of your active PATH variable by doing 'echo $PATH' on the command line. Also check that you finished the installation procedure. If so the 'maker' script should be in the .../maker/bin/ directory. Make sure it is there, and make sure it is the .../maker/bin/ directory and not the .../maker/ or .../maker/src/ directory that you added to the PATH. Thanks, Carson On 1/14/14, 7:22 AM, "Mark Yandell" wrote: > > >Mark Yandell >Professor of Human Genetics >H.A. & Edna Benning Presidential Endowed Chair >Eccles Institute of Human Genetics >University of Utah >15 North 2030 East, Room 2100 >Salt Lake City, UT 84112-5330 >ph:801-587-7707 > >________________________________________ >From: Nandita Pasari [nandita at icgeb.res.in] >Sent: Tuesday, January 14, 2014 5:09 AM >To: Mark Yandell >Subject: Issues regarding maker > >Respected Sir, > >I have been trying to install maker and the configuration it is showing >on installation is ok. >when I type maker -h it shows > > >"No command 'maker' found, did you mean: > Command 'wmaker' from package 'wmaker-common' (universe) > Command 'makeg' from package 'xutils-dev' (main) > Command 'make' from package 'make' (main) > maker: command not found" > >Also I have set the path in nano ./bashrc profile still it is not running. >Can you please help me out. > > >Nandita Pasari >Pre Doctoral Fellow >Synthetic Biology and Biofuels Group >ICGEB >New Delhi From amelia.ireland at gmod.org Tue Jan 14 13:55:20 2014 From: amelia.ireland at gmod.org (Amelia Ireland) Date: Tue, 14 Jan 2014 12:55:20 -0800 Subject: [maker-devel] GMOD Malaysia 2014 Message-ID: GMOD is pleased to announce GMOD Malaysia, a three-day training course to be held in Kuala Lumpur, Malaysia, on February 26-28, 2014. http://gmod.org/wiki/GMOD_Malaysia_2014 GMOD Malaysia offers an introduction to, and training in, the bioinformatics software offered by the Generic Model Organism Database project. Over three days, participants will learn about GMOD's free, open-source tools for visualising, storing, and disseminating genetic and genomic data. These include: - Galaxy analysis pipeline - GBrowse and JBrowse genome browsers - InterMine data warehouse - MAKER and MAKER-P genome annotation pipelines - Tripal website generator and database interface - Chado database schema Instruction is by experienced instructors and developers with deep knowledge of the tools and their applications. By the end of the course, participants will have hands-on experience of setting up and using core components needed for a modern genomics project. Application deadline: 12 February 2014. For more information, and to apply, please visit the website: http://gmod.org/wiki/GMOD_Malaysia_2014 Please spread the word to anyone who may be interested! GMOD Malaysia 2014 is made possible by the extremely generous support of National Evolutionary Synthesis Center (NESCent, http://nescent.org) and the NESCent Ambassador program. NESCent promotes the synthesis of information, concepts and knowledge to address significant, emerging, or novel questions in evolutionary science and its applications; it supports research and education across disciplinary, institutional, geographic, and demographic boundaries. The NESCent Ambassador Program is NESCent?s primary international outreach program, and is supported by a three-year grant from the NSF. GMOD is very grateful to be a beneficiary of this generous program. Thanks! -- Amelia Ireland GMOD Community Support Generic Model Organism Database project http://gmod.org || @gmodproject -------------- next part -------------- An HTML attachment was scrubbed... URL: From prakhar_aaidu16 at hotmail.com Wed Jan 15 23:12:24 2014 From: prakhar_aaidu16 at hotmail.com (PRAKHAR gaur) Date: Thu, 16 Jan 2014 11:42:24 +0530 Subject: [maker-devel] Maker Virtual Machine Image Message-ID: Hello, I am having multiple dependency related and library version issues installing Maker 2.28 on Debian 7 So would like to ask if there is a easy way out?Is there a vm image with Maker available for download from somewhere? I know about the AWS ami used for 2103 GMOD Maker Tutorial, ami-ea661f83. But wanted to use the vm locally, which is not possible with AWS ami's. Any help / pointer in right direction is appreciated. Regards,--Prakhar GaurSenior Research FellowMicrobiology @ Indian Agriculture Research InstituteNew Delhi, IN. -------------- next part -------------- An HTML attachment was scrubbed... URL: From prakhar_aaidu16 at hotmail.com Wed Jan 15 23:43:23 2014 From: prakhar_aaidu16 at hotmail.com (PRAKHAR gaur) Date: Thu, 16 Jan 2014 12:13:23 +0530 Subject: [maker-devel] Maker Virtual Machine Image In-Reply-To: References: , Message-ID: Hello Dan, The sample is a Prokaryotic genome, assembly size is greater than 6Mbp (rules out Web-Maker) Maker 2.30 is beta release hence did not try it out, will do that now. I have installed Maker before and its not a trivial task, hence the question about Virtual Machine. Since I am already struggling with installing Prokka and DIYA. If a virtual machine is available it would save ~ 3 days time, otherwise I will install from bottom up! Regards,--Prakhar GaurSenior Research FellowMicrobiology @ Indian Agriculture Research InstituteNew Delhi, IN. From: ddvanderpool at gmail.com Subject: Re: [maker-devel] Maker Virtual Machine Image Date: Wed, 15 Jan 2014 23:17:30 -0700 To: prakhar_aaidu16 at hotmail.com Hello Prakhar, Is there a reason you have not tried installing 2.30? I have it running on Debian 7 and it was fairly straight forward. Additionally, the multithreading speeds everything up so that I can annotate several smaller eukaryote genomes in one day. which dependencies and libraries are the problem? Dan VanderpoolUniversity of MontanaMcCutcheon LabHealth Sciences 304Missoula, MT 59812Office: 406-243-6106ddvanderpool at gmail.com On Jan 15, 2014, at 11:12 PM, PRAKHAR gaur wrote:Hello, I am having multiple dependency related and library version issues installing Maker 2.28 on Debian 7 So would like to ask if there is a easy way out?Is there a vm image with Maker available for download from somewhere? I know about the AWS ami used for 2103 GMOD Maker Tutorial, ami-ea661f83. But wanted to use the vm locally, which is not possible with AWS ami's. Any help / pointer in right direction is appreciated. Regards,--Prakhar GaurSenior Research FellowMicrobiology @ Indian Agriculture Research InstituteNew Delhi, IN._______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org -------------- next part -------------- An HTML attachment was scrubbed... URL: From barry.utah at gmail.com Thu Jan 16 07:16:18 2014 From: barry.utah at gmail.com (Barry Moore) Date: Thu, 16 Jan 2014 07:16:18 -0700 Subject: [maker-devel] Maker Virtual Machine Image In-Reply-To: References: Message-ID: Hi Prakar, We don't regularly create VMs of MAKER, but if you can give us some details on the install issues and well help you sort through them and fix any problems that you may have uncovered. Barry On Jan 15, 2014, at 11:12 PM, PRAKHAR gaur wrote: > Hello, > > I am having multiple dependency related and library version issues installing Maker 2.28 on Debian 7 > > So would like to ask if there is a easy way out? > Is there a vm image with Maker available for download from somewhere? > > I know about the AWS ami used for 2103 GMOD Maker Tutorial, ami-ea661f83. > > But wanted to use the vm locally, which is not possible with AWS ami's. > > Any help / pointer in right direction is appreciated. > > Regards, > -- > Prakhar Gaur > Senior Research Fellow > Microbiology @ Indian Agriculture Research Institute > New Delhi, IN. > _______________________________________________ > maker-devel mailing list > maker-devel at box290.bluehost.com > http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org Barry Moore Research Scientist Dept. of Human Genetics University of Utah Salt Lake City, UT 84112 -------------------------------------------- (801) 585-3543 -------------- next part -------------- An HTML attachment was scrubbed... URL: From saneasheikh at gmail.com Thu Jan 16 03:52:29 2014 From: saneasheikh at gmail.com (Sanea Sheikh) Date: Thu, 16 Jan 2014 11:52:29 +0100 Subject: [maker-devel] Fwd: Problem with re-annotation In-Reply-To: References: Message-ID: Hello Carson Here it is. Sanea On Tue, Jan 14, 2014 at 1:39 AM, Carson Holt wrote: > Hi Sanea, > > There are no snap calls in your results. It?s as if SNAP never even ran. > Did you capture STDERR from your second run? If so can you send it to me. > I just want to see if it even shows SNAP as having run in the progress > reports. > > Thanks, > Carson > > From: Sanea Sheikh > Date: Monday, January 13, 2014 at 2:17 AM > To: > Subject: [maker-devel] Problem with re-annotation > > Hello > > I am using Maker to annotate a genome for which I only have EST data and > some protein data. I ran Maker once using this EST and protein data > (est2genome=1, protein2genome=1). I had the Maker output. I combined all > the GFF files for all the contigs. I used the combined GFF file to train > SNAP which gave me a .hmm file. Now I modified the Maker opts control file. > I provided the hmm file in snap_hmm. I set est2genome=0 and > protein2genome=0. I ran Maker again assuming that now I have trained the > gene predictor and I would have better annotations. But now the output file > that I get does not have Maker annotation. I have attached the control > files and the output file for the re-run so you can have a look and let me > know what I am doing wrong in order to re-annotate the genome using the > output from the previous run. > > Sanea > _______________________________________________ maker-devel mailing list > maker-devel at box290.bluehost.com > http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org > -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- [saneash at milou2 re-run0]$ module load bioinfo-tools [saneash at milou2 re-run0]$ module load maker/2.28 [saneash at milou2 re-run0]$ maker STATUS: Parsing control files... STATUS: Processing and indexing input FASTA files... STATUS: Setting up database for any GFF3 input... A data structure will be created for you at: /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore To access files for individual sequences use the datastore index: /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_master_datastore_index.log STATUS: Now running MAKER... examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C1 Length: 58489 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0 -pa 1 #-------------------------------# doing blastx repeats formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:4 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:4 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:4 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:4 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:4 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:1 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:5 current j:0 j_size:5 current j:1 j_size:5 current j:2 j_size:5 current j:3 j_size:5 current j:4 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C1.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C1.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11053%7Crhogap.for.4526-6082.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.4526-6082.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.4526-6082.Ar_EST_120301b_c11053%7Crhogap.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c268%7Crhogap.for.5511-6995.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.5511-6995.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.5511-6995.Ar_EST_120301b_c268%7Crhogap.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2803%7Cprotein.for.6572-8321.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.6572-8321.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.6572-8321.Ar_EST_120301b_c2803%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18685%7C5.for.10389-12250.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.10389-12250.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.10389-12250.Ar_EST_120301b_c18685%7C5.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20527%7C5.for.11857-13265.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.11857-13265.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.11857-13265.Ar_EST_120301b_c20527%7C5.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c607%7C---NA---.for.12934-14282.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.12934-14282.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.12934-14282.Ar_EST_120301b_c607%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10671%7Cn-acylethanolamine-hydrolyzing.for.13964-15360.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.13964-15360.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.13964-15360.Ar_EST_120301b_c10671%7Cn-acylethanolamine-hydrolyzing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17817%7C26s.for.14494-15869.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.14494-15869.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.14494-15869.Ar_EST_120301b_c17817%7C26s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2291%7Cautophagy.for.15736-17754.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.15736-17754.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.15736-17754.Ar_EST_120301b_c2291%7Cautophagy.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17723%7Ccci.for.17326-18646.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.17326-18646.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.17326-18646.Ar_EST_120301b_c17723%7Ccci.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13159%7Cair9.for.19436-20822.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.19436-20822.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.19436-20822.Ar_EST_120301b_c13159%7Cair9.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11534%7Cair9.for.20126-21431.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.20126-21431.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.20126-21431.Ar_EST_120301b_c11534%7Cair9.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15074%7Cair9.for.20452-21494.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.20452-21494.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.20452-21494.Ar_EST_120301b_c15074%7Cair9.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1253%7Cf-box.for.22970-24212.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.22970-24212.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.22970-24212.Ar_EST_120301b_c1253%7Cf-box.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17132%7Calkylated.for.24491-25995.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.24491-25995.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.24491-25995.Ar_EST_120301b_c17132%7Calkylated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9069%7Cam193219.for.31057-32071.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.31057-32071.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.31057-32071.Ar_EST_120301b_c9069%7Cam193219.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10823%7Ccr05-c1-100-012-f08-.for.33886-35415.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.33886-35415.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.33886-35415.Ar_EST_120301b_c10823%7Ccr05-c1-100-012-f08-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c930%7Cprotein.for.38557-40055.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.38557-40055.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.38557-40055.Ar_EST_120301b_c930%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18260%7Cunq127-.for.40476-41781.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.40476-41781.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.40476-41781.Ar_EST_120301b_c18260%7Cunq127-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2552%7Cprotein.for.48234-49551.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.48234-49551.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.48234-49551.Ar_EST_120301b_c2552%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2497%7Cprotein.for.48058-49397.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.48058-49397.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.48058-49397.Ar_EST_120301b_c2497%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1789%7Cprotein.for.48205-49551.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.48205-49551.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.48205-49551.Ar_EST_120301b_c1789%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18050%7Ccto.for.49972-51260.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.49972-51260.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.49972-51260.Ar_EST_120301b_c18050%7Ccto.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9640%7Cmethyltransferase.for.51502-53111.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.51502-53111.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.51502-53111.Ar_EST_120301b_c9640%7Cmethyltransferase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17917%7Ccht.for.52335-53662.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.52335-53662.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.52335-53662.Ar_EST_120301b_c17917%7Ccht.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16986%7Cvcdc13845.for.55765-57091.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.55765-57091.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.55765-57091.Ar_EST_120301b_c16986%7Cvcdc13845.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 flattening EST clusters doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:36 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:40 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:35 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:65 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:45 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:50 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:34 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:50 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:39 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:30 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088766%7Cgb%7CEFC42427%2E1%7C.for.4953-6967.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.4953-6967.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.4953-6967.gi%7C284088766%7Cgb%7CEFC42427%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083894%7Cgb%7CEFC37592%2E1%7C.for.6309-7884.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.6309-7884.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.6309-7884.gi%7C284083894%7Cgb%7CEFC37592%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089795%7Cgb%7CEFC43450%2E1%7C.for.6219-8277.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.6219-8277.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.6219-8277.gi%7C284089795%7Cgb%7CEFC43450%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097098%7Cgb%7CEFC50725%2E1%7C.for.15836-17505.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.15836-17505.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.15836-17505.gi%7C284097098%7Cgb%7CEFC50725%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095290%7Cgb%7CEFC48921%2E1%7C.for.24561-26053.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.24561-26053.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.24561-26053.gi%7C284095290%7Cgb%7CEFC48921%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085158%7Cgb%7CEFC38844%2E1%7C.for.25336-26753.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.25336-26753.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.25336-26753.gi%7C284085158%7Cgb%7CEFC38844%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096842%7Cgb%7CEFC50469%2E1%7C.for.26367-28540.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.26367-28540.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.26367-28540.gi%7C284096842%7Cgb%7CEFC50469%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081501%7Cgb%7CEFC35480%2E1%7C.for.38104-39098.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.38104-39098.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.38104-39098.gi%7C284081501%7Cgb%7CEFC35480%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085657%7Cgb%7CEFC39339%2E1%7C.for.38104-39098.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.38104-39098.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.38104-39098.gi%7C284085657%7Cgb%7CEFC39339%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.for.41924-44025.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41924-44025.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41924-44025.gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090673%7Cgb%7CEFC44323%2E1%7C.for.41960-43878.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41960-43878.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41960-43878.gi%7C284090673%7Cgb%7CEFC44323%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.for.41960-43902.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41960-43902.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41960-43902.gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094023%7Cgb%7CEFC47658%2E1%7C.for.41957-44109.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41957-44109.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41957-44109.gi%7C284094023%7Cgb%7CEFC47658%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.for.41954-43965.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41954-43965.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41954-43965.gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C464854%7Csp%7CP34108%2E1%7CTBB_NAEGR.for.45443-47597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.gi%7C464854%7Csp%7CP34108%2E1%7CTBB_NAEGR.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086940%7Cgb%7CEFC40613%2E1%7C.for.45578-47603.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45578-47603.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45578-47603.gi%7C284086940%7Cgb%7CEFC40613%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C9737%7Cemb%7CCAA78362%2E1%7C.for.45443-47597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.gi%7C9737%7Cemb%7CCAA78362%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082800%7Cgb%7CEFC36511%2E1%7C.for.45443-47597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.gi%7C284082800%7Cgb%7CEFC36511%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086082%7Cgb%7CEFC39761%2E1%7C.for.45443-47597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.gi%7C284086082%7Cgb%7CEFC39761%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091464%7Cgb%7CEFC45110%2E1%7C.for.45440-47621.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45440-47621.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45440-47621.gi%7C284091464%7Cgb%7CEFC45110%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C15082214%7Cgb%7CAAK84066%2E1%7CAF401641_1.for.45443-46787.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-46787.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-46787.gi%7C15082214%7Cgb%7CAAK84066%2E1%7CAF401641_1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093591%7Cgb%7CEFC47228%2E1%7C.for.45440-47594.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45440-47594.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45440-47594.gi%7C284093591%7Cgb%7CEFC47228%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091812%7Cgb%7CEFC45457%2E1%7C.for.45443-47639.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47639.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47639.gi%7C284091812%7Cgb%7CEFC45457%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C829213%7Cemb%7CCAA56940%2E1%7C.for.45443-47597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.gi%7C829213%7Cemb%7CCAA56940%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083707%7Cgb%7CEFC37407%2E1%7C.for.45449-47648.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45449-47648.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45449-47648.gi%7C284083707%7Cgb%7CEFC37407%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084695%7Cgb%7CEFC38385%2E1%7C.for.45443-47597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.gi%7C284084695%7Cgb%7CEFC38385%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083068%7Cgb%7CEFC36775%2E1%7C.for.45443-47597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.gi%7C284083068%7Cgb%7CEFC36775%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096574%7Cgb%7CEFC50202%2E1%7C.for.48315-49510.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.48315-49510.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.48315-49510.gi%7C284096574%7Cgb%7CEFC50202%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:8 now processing 0 total clusters:8 now processing 0 total clusters:8 now processing 0 total clusters:8 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:8 now processing 0 ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:8 now processing 0 total clusters:8 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:8 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:7 now processing 0 ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:14 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:14 now processing 0 total clusters:14 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.4725-6795.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.4725-6795.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.4725-6795.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.10588-12055.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.10588-12055.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.10588-12055.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.12056-13157.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.12056-13157.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.12056-13157.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.15926-18446.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.15926-18446.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.15926-18446.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.23065-23889.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.23065-23889.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.23065-23889.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.24690-25853.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.24690-25853.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.24690-25853.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.26566-28340.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.26566-28340.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.26566-28340.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.38273-38898.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.38273-38898.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.38273-38898.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.40672-41581.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.40672-41581.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.40672-41581.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.45639-47448.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.45639-47448.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.45639-47448.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.48257-49356.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.48257-49356.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.48257-49356.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.50171-51071.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.50171-51071.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.50171-51071.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.55964-56891.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.55964-56891.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.55964-56891.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.6418-8217.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.6418-8217.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.6418-8217.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.13131-14082.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.13131-14082.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.13131-14082.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.14163-15160.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.14163-15160.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.14163-15160.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.19635-21294.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.19635-21294.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.19635-21294.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.23268-24019.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.23268-24019.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.23268-24019.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.25535-26553.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.25535-26553.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.25535-26553.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.31256-31871.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.31256-31871.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.31256-31871.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.34085-35224.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.34085-35224.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.34085-35224.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.51701-53462.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.51701-53462.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.51701-53462.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C2 Length: 117277 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:103 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:75 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:71 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:65 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:81 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:94 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:87 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:81 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:73 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:80 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C2.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C2.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c507%7Chypothetical.for.1-1394.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.1-1394.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.1-1394.Ar_EST_120301b_c507%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14990%7C---NA---.for.640-1498.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.640-1498.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.640-1498.Ar_EST_120301b_c14990%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5131%7CsT7aVVM011J17071.for.761-2391.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.761-2391.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.761-2391.Ar_EST_120301b_rep_c5131%7CsT7aVVM011J17071.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig47%7Ctransmembrane.for.6436-8329.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.6436-8329.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.6436-8329.120301b_Contig47%7Ctransmembrane.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14084%7Cunnamed.for.7758-9064.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.7758-9064.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.7758-9064.Ar_EST_120301b_c14084%7Cunnamed.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9225%7Ctransmembrane.for.8330-9700.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.8330-9700.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.8330-9700.Ar_EST_120301b_c9225%7Ctransmembrane.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14631%7Chydra.for.8696-9907.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.8696-9907.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.8696-9907.Ar_EST_120301b_c14631%7Chydra.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3024%7Cudp-glucose.for.9676-11591.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.9676-11591.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.9676-11591.Ar_EST_120301b_c3024%7Cudp-glucose.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig990%7Cmitochondrial.for.10856-12335.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.10856-12335.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.10856-12335.120301b_Contig990%7Cmitochondrial.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1211%7Cgcn5-related.for.11805-13456.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.11805-13456.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.11805-13456.Ar_EST_120301b_c1211%7Cgcn5-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16722%7Cct752454.for.13015-14306.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.13015-14306.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.13015-14306.Ar_EST_120301b_c16722%7Cct752454.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig224%7Cprotein.for.15919-17709.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.15919-17709.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.15919-17709.120301b_Contig224%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3881%7Cprotein.for.16047-17501.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.16047-17501.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.16047-17501.Ar_EST_120301b_c3881%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2433%7Cgpgc_est03437.for.17128-18491.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.17128-18491.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.17128-18491.Ar_EST_120301b_c2433%7Cgpgc_est03437.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13343%7Cdioscorea.for.17305-18618.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.17305-18618.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.17305-18618.Ar_EST_120301b_c13343%7Cdioscorea.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11728%7Cpiggybac-derived.for.18145-19476.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.18145-19476.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.18145-19476.Ar_EST_120301b_c11728%7Cpiggybac-derived.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8045%7Chypothetical.for.22621-24232.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.22621-24232.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.22621-24232.Ar_EST_120301b_c8045%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12485%7Ch019c03.for.22501-23565.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.22501-23565.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.22501-23565.Ar_EST_120301b_c12485%7Ch019c03.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16884%7Cheat-shocked.for.24359-25393.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.24359-25393.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.24359-25393.Ar_EST_120301b_c16884%7Cheat-shocked.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5131%7CsT7aVVM011J17071.for.25415-26610.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.25415-26610.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.25415-26610.Ar_EST_120301b_rep_c5131%7CsT7aVVM011J17071.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19746%7Cglycoside.for.26440-27757.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.26440-27757.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.26440-27757.Ar_EST_120301b_c19746%7Cglycoside.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig676%7Cglycoside.for.26298-28164.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.26298-28164.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.26298-28164.120301b_Contig676%7Cglycoside.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13860%7Cprotein.for.32010-33342.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.32010-33342.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.32010-33342.Ar_EST_120301b_c13860%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c199%7Cinterferon-related.for.33113-34832.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.33113-34832.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.33113-34832.Ar_EST_120301b_c199%7Cinterferon-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig826%7Cintegral.for.34950-37418.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.34950-37418.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.34950-37418.120301b_Contig826%7Cintegral.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3644%7Crasgef.for.40362-42405.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.40362-42405.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.40362-42405.Ar_EST_120301b_c3644%7Crasgef.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2583%7Crasgef.for.39147-41164.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.39147-41164.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.39147-41164.Ar_EST_120301b_c2583%7Crasgef.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12768%7Crasgef.for.41845-43175.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.41845-43175.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.41845-43175.Ar_EST_120301b_c12768%7Crasgef.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16000%7Cprotein.for.42497-43802.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.42497-43802.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.42497-43802.Ar_EST_120301b_c16000%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12166%7Cdedicator.for.43827-45754.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.43827-45754.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.43827-45754.Ar_EST_120301b_c12166%7Cdedicator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12629%7Cpeptidyl-prolyl.for.46674-48006.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46674-48006.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46674-48006.Ar_EST_120301b_c12629%7Cpeptidyl-prolyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4714%7Crac.for.50959-53161.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.50959-53161.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.50959-53161.Ar_EST_120301b_rep_c4714%7Crac.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11446%7C40s.for.51193-52314.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51193-52314.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51193-52314.Ar_EST_120301b_rep_c11446%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7175%7Crac-beta.for.51491-53136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51491-53136.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51491-53136.Ar_EST_120301b_rep_c7175%7Crac-beta.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17186%7Cprotein.for.52528-54217.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52528-54217.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52528-54217.Ar_EST_120301b_c17186%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17524%7Ccto.for.59145-60473.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.59145-60473.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.59145-60473.Ar_EST_120301b_c17524%7Ccto.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c989%7Cprotease.for.60132-61476.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.60132-61476.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.60132-61476.Ar_EST_120301b_c989%7Cprotease.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7983%7Cendonuclease.for.60911-62507.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.60911-62507.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.60911-62507.Ar_EST_120301b_c7983%7Cendonuclease.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20027%7Cgtp-binding.for.62798-64102.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.62798-64102.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.62798-64102.Ar_EST_120301b_c20027%7Cgtp-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18683%7Cg-protein.for.62454-63870.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.62454-63870.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.62454-63870.Ar_EST_120301b_c18683%7Cg-protein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16992%7Cnovel.for.63760-65049.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.63760-65049.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.63760-65049.Ar_EST_120301b_c16992%7Cnovel.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10583%7Clipase.for.68765-70207.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.68765-70207.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.68765-70207.Ar_EST_120301b_c10583%7Clipase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11588%7C---NA---.for.69933-71292.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.69933-71292.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.69933-71292.Ar_EST_120301b_c11588%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1963%7Cprotein.for.70510-71966.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.70510-71966.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.70510-71966.Ar_EST_120301b_c1963%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20347%7Cpeptidase.for.74316-75861.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.74316-75861.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.74316-75861.Ar_EST_120301b_c20347%7Cpeptidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20105%7Cserine.for.73290-75800.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.73290-75800.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.73290-75800.Ar_EST_120301b_c20105%7Cserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13314%7Ckaan-.for.76588-77926.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.76588-77926.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.76588-77926.Ar_EST_120301b_c13314%7Ckaan-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17187%7Cljna722tf.for.78662-79915.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.78662-79915.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.78662-79915.Ar_EST_120301b_c17187%7Cljna722tf.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14075%7Cipt.for.80654-82283.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.80654-82283.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.80654-82283.Ar_EST_120301b_c14075%7Cipt.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2151%7Cegf-like.for.80564-82712.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.80564-82712.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.80564-82712.Ar_EST_120301b_c2151%7Cegf-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15871%7Cgm-r1089.for.81864-83119.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.81864-83119.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.81864-83119.Ar_EST_120301b_c15871%7Cgm-r1089.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3019%7Crcc1.for.82360-83500.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.82360-83500.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.82360-83500.Ar_EST_120301b_c3019%7Crcc1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18457%7Cregulator.for.82761-84301.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.82761-84301.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.82761-84301.Ar_EST_120301b_c18457%7Cregulator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2002%7Cmitochondrial.for.84168-85833.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.84168-85833.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.84168-85833.Ar_EST_120301b_c2002%7Cmitochondrial.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16158%7Cthioredoxin.for.86999-88287.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.86999-88287.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.86999-88287.Ar_EST_120301b_c16158%7Cthioredoxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10238%7Ccto.for.88444-90125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.88444-90125.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.88444-90125.Ar_EST_120301b_c10238%7Ccto.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c525%7Ctranscription.for.89357-91075.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.89357-91075.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.89357-91075.Ar_EST_120301b_c525%7Ctranscription.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10630%7Cpredicted.for.90701-91993.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.90701-91993.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.90701-91993.Ar_EST_120301b_c10630%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3446%7Cwd.for.94044-95698.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.94044-95698.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.94044-95698.Ar_EST_120301b_c3446%7Cwd.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2740%7Cbromodomain.for.95217-96781.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.95217-96781.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.95217-96781.Ar_EST_120301b_c2740%7Cbromodomain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14182%7Cwd40.for.95143-96256.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.95143-96256.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.95143-96256.Ar_EST_120301b_c14182%7Cwd40.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2955%7Cwd.for.96139-98603.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.96139-98603.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.96139-98603.Ar_EST_120301b_c2955%7Cwd.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15897%7Cwd.for.96376-97474.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.96376-97474.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.96376-97474.Ar_EST_120301b_c15897%7Cwd.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1239%7C---NA---.for.98316-99620.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.98316-99620.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.98316-99620.Ar_EST_120301b_c1239%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1149%7Cbeta-galactosidase.for.101237-104546.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.101237-104546.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.101237-104546.Ar_EST_120301b_c1149%7Cbeta-galactosidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18482%7C---NA---.for.103754-105055.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.103754-105055.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.103754-105055.Ar_EST_120301b_c18482%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17585%7Csuppressor.for.104275-105642.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.104275-105642.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.104275-105642.Ar_EST_120301b_c17585%7Csuppressor.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9748%7Cphytanoyl-.for.105274-106624.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.105274-106624.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.105274-106624.Ar_EST_120301b_c9748%7Cphytanoyl-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16625%7Cixodes.for.108291-109796.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.108291-109796.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.108291-109796.Ar_EST_120301b_c16625%7Cixodes.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig957%7Cprolyl.for.111713-113469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.111713-113469.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.111713-113469.120301b_Contig957%7Cprolyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c341%7Cprolyl.for.112916-114615.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.112916-114615.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.112916-114615.Ar_EST_120301b_c341%7Cprolyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19609%7C60s.for.114043-115231.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.114043-115231.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.114043-115231.Ar_EST_120301b_rep_c19609%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c363%7Cprotein.for.115090-116629.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.115090-116629.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.115090-116629.Ar_EST_120301b_c363%7Cprotein.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:52 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:52 now processing 0 total clusters:52 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:52 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:52 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:72 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:65 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:74 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:81 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:70 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:73 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:60 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:72 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:77 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:58 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094603%7Cgb%7CEFC48237%2E1%7C.for.9805-11564.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.9805-11564.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.9805-11564.gi%7C284094603%7Cgb%7CEFC48237%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083050%7Cgb%7CEFC36758%2E1%7C.for.16040-17692.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.16040-17692.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.16040-17692.gi%7C284083050%7Cgb%7CEFC36758%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096069%7Cgb%7CEFC49698%2E1%7C.for.16040-17659.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.16040-17659.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.16040-17659.gi%7C284096069%7Cgb%7CEFC49698%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091333%7Cgb%7CEFC44980%2E1%7C.for.27718-29412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.27718-29412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.27718-29412.gi%7C284091333%7Cgb%7CEFC44980%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089590%7Cgb%7CEFC43247%2E1%7C.for.39144-41128.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.39144-41128.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.39144-41128.gi%7C284089590%7Cgb%7CEFC43247%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089589%7Cgb%7CEFC43246%2E1%7C.for.39144-41128.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.39144-41128.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.39144-41128.gi%7C284089589%7Cgb%7CEFC43246%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081155%7Cgb%7CEFC35313%2E1%7C.for.46491-47770.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47770.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47770.gi%7C284081155%7Cgb%7CEFC35313%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092983%7Cgb%7CEFC46623%2E1%7C.for.46491-47770.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47770.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47770.gi%7C284092983%7Cgb%7CEFC46623%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093592%7Cgb%7CEFC47229%2E1%7C.for.46503-47767.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46503-47767.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46503-47767.gi%7C284093592%7Cgb%7CEFC47229%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089692%7Cgb%7CEFC43348%2E1%7C.for.46503-47779.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46503-47779.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46503-47779.gi%7C284089692%7Cgb%7CEFC43348%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088464%7Cgb%7CEFC42127%2E1%7C.for.46491-47770.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47770.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47770.gi%7C284088464%7Cgb%7CEFC42127%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094883%7Cgb%7CEFC48516%2E1%7C.for.46497-47776.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46497-47776.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46497-47776.gi%7C284094883%7Cgb%7CEFC48516%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095464%7Cgb%7CEFC49095%2E1%7C.for.46491-47767.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47767.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47767.gi%7C284095464%7Cgb%7CEFC49095%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090503%7Cgb%7CEFC44154%2E1%7C.for.46491-47770.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47770.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47770.gi%7C284090503%7Cgb%7CEFC44154%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086458%7Cgb%7CEFC40134%2E1%7C.for.46491-47773.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47773.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47773.gi%7C284086458%7Cgb%7CEFC40134%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094068%7Cgb%7CEFC47703%2E1%7C.for.51383-53046.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51383-53046.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51383-53046.gi%7C284094068%7Cgb%7CEFC47703%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094875%7Cgb%7CEFC48508%2E1%7C.for.50957-53136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.50957-53136.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.50957-53136.gi%7C284094875%7Cgb%7CEFC48508%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094832%7Cgb%7CEFC48465%2E1%7C.for.50972-53136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.50972-53136.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.50972-53136.gi%7C284094832%7Cgb%7CEFC48465%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088361%7Cgb%7CEFC42025%2E1%7C.for.51365-53046.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51365-53046.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51365-53046.gi%7C284088361%7Cgb%7CEFC42025%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090070%7Cgb%7CEFC43724%2E1%7C.for.51362-53094.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51362-53094.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51362-53094.gi%7C284090070%7Cgb%7CEFC43724%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085317%7Cgb%7CEFC39002%2E1%7C.for.52410-54205.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52410-54205.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52410-54205.gi%7C284085317%7Cgb%7CEFC39002%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081068%7Cgb%7CEFC35282%2E1%7C.for.52797-54004.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52797-54004.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52797-54004.gi%7C284081068%7Cgb%7CEFC35282%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.for.52776-53791.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52776-53791.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52776-53791.gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091625%7Cgb%7CEFC45271%2E1%7C.for.52410-54199.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52410-54199.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52410-54199.gi%7C284091625%7Cgb%7CEFC45271%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096422%7Cgb%7CEFC50050%2E1%7C.for.52410-54208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52410-54208.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52410-54208.gi%7C284096422%7Cgb%7CEFC50050%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097050%7Cgb%7CEFC50677%2E1%7C.for.52416-54202.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52416-54202.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52416-54202.gi%7C284097050%7Cgb%7CEFC50677%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090562%7Cgb%7CEFC44213%2E1%7C.for.66633-67624.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66633-67624.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66633-67624.gi%7C284090562%7Cgb%7CEFC44213%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092309%7Cgb%7CEFC45952%2E1%7C.for.66693-67995.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66693-67995.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66693-67995.gi%7C284092309%7Cgb%7CEFC45952%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090708%7Cgb%7CEFC44358%2E1%7C.for.66516-67624.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66516-67624.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66516-67624.gi%7C284090708%7Cgb%7CEFC44358%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093840%7Cgb%7CEFC47476%2E1%7C.for.66690-67615.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66690-67615.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66690-67615.gi%7C284093840%7Cgb%7CEFC47476%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081311%7Cgb%7CEFC35385%2E1%7C.for.66618-67624.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66618-67624.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66618-67624.gi%7C284081311%7Cgb%7CEFC35385%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082866%7Cgb%7CEFC36576%2E1%7C.for.70396-71585.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.70396-71585.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.70396-71585.gi%7C284082866%7Cgb%7CEFC36576%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082849%7Cgb%7CEFC36560%2E1%7C.for.73129-75157.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.73129-75157.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.73129-75157.gi%7C284082849%7Cgb%7CEFC36560%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.for.80650-81731.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.80650-81731.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.80650-81731.gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089151%7Cgb%7CEFC42810%2E1%7C.for.87117-88275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.87117-88275.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.87117-88275.gi%7C284089151%7Cgb%7CEFC42810%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095219%7Cgb%7CEFC48850%2E1%7C.for.111697-114629.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.111697-114629.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.111697-114629.gi%7C284095219%7Cgb%7CEFC48850%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086650%7Cgb%7CEFC40325%2E1%7C.for.115979-117015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.115979-117015.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.115979-117015.gi%7C284086650%7Cgb%7CEFC40325%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:9 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:9 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:7 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:7 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:26 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.954-2217.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.954-2217.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.954-2217.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.9875-14112.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.9875-14112.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.9875-14112.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.16118-18418.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.16118-18418.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.16118-18418.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.22820-24032.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.22820-24032.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.22820-24032.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.51156-52963.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.51156-52963.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.51156-52963.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.59344-62307.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.59344-62307.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.59344-62307.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.68964-70007.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.68964-70007.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.68964-70007.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.70132-71766.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.70132-71766.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.70132-71766.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.76787-77726.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.76787-77726.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.76787-77726.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.78861-79715.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.78861-79715.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.78861-79715.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.84367-85636.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.84367-85636.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.84367-85636.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.94243-98403.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.94243-98403.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.94243-98403.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.98513-99420.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.98513-99420.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.98513-99420.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.101436-105465.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.101436-105465.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.101436-105465.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.105473-106424.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.105473-106424.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.105473-106424.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.115289-116429.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.115289-116429.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.115289-116429.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.6631-9707.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.6631-9707.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.6631-9707.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.26497-27964.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.26497-27964.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.26497-27964.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.32196-33142.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.32196-33142.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.32196-33142.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.35149-37218.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.35149-37218.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.35149-37218.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.39346-43602.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.39346-43602.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.39346-43602.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.44026-45564.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.44026-45564.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.44026-45564.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.46690-47806.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.46690-47806.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.46690-47806.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.52615-54017.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.52615-54017.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.52615-54017.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.62650-64855.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.62650-64855.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.62650-64855.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.66715-67795.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.66715-67795.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.66715-67795.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.73328-75726.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.73328-75726.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.73328-75726.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.80763-84101.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.80763-84101.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.80763-84101.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.87198-88087.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.87198-88087.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.87198-88087.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.88643-90875.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.88643-90875.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.88643-90875.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.90900-91793.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.90900-91793.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.90900-91793.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.108490-109596.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.108490-109596.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.108490-109596.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.111879-114429.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.111879-114429.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.111879-114429.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.116098-116885.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.116098-116885.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.116098-116885.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C4 Length: 65381 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C4.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C4.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10892%7C0082817.for.1-1025.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.1-1025.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.1-1025.Ar_EST_120301b_c10892%7C0082817.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12497%7Cpl08003b1g07.for.464-1964.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.464-1964.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.464-1964.Ar_EST_120301b_c12497%7Cpl08003b1g07.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9064%7Chypothetical.for.1180-2583.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.1180-2583.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.1180-2583.Ar_EST_120301b_c9064%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14018%7Cui-s-gu1-aee-p-13-0-.for.2150-3327.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.2150-3327.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.2150-3327.Ar_EST_120301b_c14018%7Cui-s-gu1-aee-p-13-0-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16392%7Ctm2.for.3881-5011.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3881-5011.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3881-5011.Ar_EST_120301b_rep_c16392%7Ctm2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18540%7Cpredicted.for.4013-5052.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.4013-5052.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.4013-5052.Ar_EST_120301b_rep_c18540%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19988%7Ctm2.for.4002-4998.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.4002-4998.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.4002-4998.Ar_EST_120301b_rep_c19988%7Ctm2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17214%7Ctm2.for.3986-5028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3986-5028.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3986-5028.Ar_EST_120301b_rep_c17214%7Ctm2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15650%7Cpredicted.for.3969-4990.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3969-4990.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3969-4990.Ar_EST_120301b_rep_c15650%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7924%7Cpredicted.for.3983-5062.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3983-5062.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3983-5062.Ar_EST_120301b_rep_c7924%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6312%7Cribosomal.for.3930-4999.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3930-4999.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3930-4999.Ar_EST_120301b_rep_c6312%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4538%7Ctm2.for.3881-5023.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3881-5023.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3881-5023.Ar_EST_120301b_rep_c4538%7Ctm2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13709%7Cintegrator.for.6912-8195.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.6912-8195.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.6912-8195.Ar_EST_120301b_c13709%7Cintegrator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9675%7Cculex.for.9178-10584.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.9178-10584.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.9178-10584.Ar_EST_120301b_c9675%7Cculex.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c257%7Cqg_abcdi.for.9988-11249.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.9988-11249.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.9988-11249.Ar_EST_120301b_c257%7Cqg_abcdi.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8616%7Cclp.for.16774-18142.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.16774-18142.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.16774-18142.Ar_EST_120301b_rep_c8616%7Cclp.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c673%7Ccathepsin.for.22385-24283.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.22385-24283.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.22385-24283.Ar_EST_120301b_c673%7Ccathepsin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16839%7Cn-acetylglucosaminyl-phosphatidylinositol.for.24238-25543.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.24238-25543.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.24238-25543.Ar_EST_120301b_c16839%7Cn-acetylglucosaminyl-phosphatidylinositol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13622%7Cpredicted.for.27404-28719.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.27404-28719.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.27404-28719.Ar_EST_120301b_c13622%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3407%7Cabc.for.28182-30134.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.28182-30134.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.28182-30134.Ar_EST_120301b_c3407%7Cabc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13324%7Cpeptidase.for.29844-31104.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.29844-31104.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.29844-31104.Ar_EST_120301b_c13324%7Cpeptidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17579%7Ccafy.for.30948-32538.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.30948-32538.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.30948-32538.Ar_EST_120301b_c17579%7Ccafy.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17883%7Cme1-0071p-a159-f12-.for.32347-33734.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.32347-33734.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.32347-33734.Ar_EST_120301b_c17883%7Cme1-0071p-a159-f12-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c321%7Crho.for.33136-34435.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.33136-34435.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.33136-34435.Ar_EST_120301b_c321%7Crho.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1291%7Cgolgin.for.33807-35294.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.33807-35294.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.33807-35294.120301b_Contig1291%7Cgolgin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8512%7Crho.for.34096-36128.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.34096-36128.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.34096-36128.Ar_EST_120301b_c8512%7Crho.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4149%7Ccathepsin.for.36731-38881.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.36731-38881.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.36731-38881.Ar_EST_120301b_rep_c4149%7Ccathepsin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13879%7Ccathepsin.for.36811-38313.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.36811-38313.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.36811-38313.Ar_EST_120301b_rep_c13879%7Ccathepsin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig493%7Cgut.for.37440-38856.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.37440-38856.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.37440-38856.120301b_Contig493%7Cgut.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19441%7C40s.for.37322-38430.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.37322-38430.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.37322-38430.Ar_EST_120301b_rep_c19441%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6027%7Ccysteine.for.36676-38177.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.36676-38177.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.36676-38177.Ar_EST_120301b_rep_c6027%7Ccysteine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10144%7Ccathepsin.for.37675-38749.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.37675-38749.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.37675-38749.Ar_EST_120301b_rep_c10144%7Ccathepsin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12182%7Cdigestive.for.36933-38320.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.36933-38320.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.36933-38320.Ar_EST_120301b_rep_c12182%7Cdigestive.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1163%7Cprotein.for.40718-42567.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.40718-42567.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.40718-42567.120301b_Contig1163%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c335%7Cglucosamine-6-phosphate.for.42267-44759.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.42267-44759.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.42267-44759.Ar_EST_120301b_c335%7Cglucosamine-6-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13169%7Cglucosamine-6-phosphate.for.42266-43240.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.42266-43240.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.42266-43240.Ar_EST_120301b_c13169%7Cglucosamine-6-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12559%7Cendocytosis.for.45717-47004.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.45717-47004.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.45717-47004.Ar_EST_120301b_c12559%7Cendocytosis.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4411%7Cfyve-type.for.46516-48423.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.46516-48423.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.46516-48423.Ar_EST_120301b_rep_c4411%7Cfyve-type.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13558%7Ccomm.for.50698-52032.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.50698-52032.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.50698-52032.Ar_EST_120301b_c13558%7Ccomm.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15742%7Ctrna.for.52178-53369.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.52178-53369.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.52178-53369.Ar_EST_120301b_c15742%7Ctrna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16117%7Csmall.for.53247-54540.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.53247-54540.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.53247-54540.Ar_EST_120301b_c16117%7Csmall.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17565%7Cconserved.for.63969-65310.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.63969-65310.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.63969-65310.Ar_EST_120301b_c17565%7Cconserved.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:36 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:36 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:42 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:48 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:46 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:50 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:42 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:31 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090220%7Cgb%7CEFC43873%2E1%7C.for.18520-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18520-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18520-19886.gi%7C284090220%7Cgb%7CEFC43873%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085812%7Cgb%7CEFC39493%2E1%7C.for.18466-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18466-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18466-19886.gi%7C284085812%7Cgb%7CEFC39493%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095573%7Cgb%7CEFC49203%2E1%7C.for.18523-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18523-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18523-19886.gi%7C284095573%7Cgb%7CEFC49203%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092862%7Cgb%7CEFC46502%2E1%7C.for.18535-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18535-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18535-19886.gi%7C284092862%7Cgb%7CEFC46502%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090872%7Cgb%7CEFC44522%2E1%7C.for.18538-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18538-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18538-19886.gi%7C284090872%7Cgb%7CEFC44522%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081627%7Cgb%7CEFC35562%2E1%7C.for.18802-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18802-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18802-19886.gi%7C284081627%7Cgb%7CEFC35562%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095689%7Cgb%7CEFC49319%2E1%7C.for.18511-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18511-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18511-19886.gi%7C284095689%7Cgb%7CEFC49319%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090598%7Cgb%7CEFC44249%2E1%7C.for.18508-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18508-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18508-19886.gi%7C284090598%7Cgb%7CEFC44249%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092337%7Cgb%7CEFC45979%2E1%7C.for.18523-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18523-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18523-19886.gi%7C284092337%7Cgb%7CEFC45979%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087750%7Cgb%7CEFC41418%2E1%7C.for.18466-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18466-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18466-19886.gi%7C284087750%7Cgb%7CEFC41418%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097171%7Cgb%7CEFC50798%2E1%7C.for.18511-19877.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18511-19877.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18511-19877.gi%7C284097171%7Cgb%7CEFC50798%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096980%7Cgb%7CEFC50607%2E1%7C.for.18523-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18523-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18523-19886.gi%7C284096980%7Cgb%7CEFC50607%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082060%7Cgb%7CEFC35846%2E1%7C.for.18706-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18706-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18706-19886.gi%7C284082060%7Cgb%7CEFC35846%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089921%7Cgb%7CEFC43576%2E1%7C.for.18469-19655.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18469-19655.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18469-19655.gi%7C284089921%7Cgb%7CEFC43576%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090604%7Cgb%7CEFC44255%2E1%7C.for.18511-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18511-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18511-19886.gi%7C284090604%7Cgb%7CEFC44255%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093718%7Cgb%7CEFC47355%2E1%7C.for.18505-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18505-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18505-19886.gi%7C284093718%7Cgb%7CEFC47355%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087888%7Cgb%7CEFC41555%2E1%7C.for.18511-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18511-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18511-19886.gi%7C284087888%7Cgb%7CEFC41555%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080970%7Cgb%7CEFC35250%2E1%7C.for.23211-24283.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.23211-24283.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.23211-24283.gi%7C284080970%7Cgb%7CEFC35250%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091231%7Cgb%7CEFC44879%2E1%7C.for.22743-24259.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.22743-24259.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.22743-24259.gi%7C284091231%7Cgb%7CEFC44879%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096232%7Cgb%7CEFC49860%2E1%7C.for.24093-26257.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.24093-26257.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.24093-26257.gi%7C284096232%7Cgb%7CEFC49860%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090699%7Cgb%7CEFC44349%2E1%7C.for.27429-30997.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.27429-30997.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.27429-30997.gi%7C284090699%7Cgb%7CEFC44349%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095545%7Cgb%7CEFC49175%2E1%7C.for.28112-31000.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.28112-31000.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.28112-31000.gi%7C284095545%7Cgb%7CEFC49175%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082178%7Cgb%7CEFC35938%2E1%7C.for.38304-39589.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.38304-39589.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.38304-39589.gi%7C284082178%7Cgb%7CEFC35938%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087427%7Cgb%7CEFC41097%2E1%7C.for.38304-39589.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.38304-39589.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.38304-39589.gi%7C284087427%7Cgb%7CEFC41097%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092869%7Cgb%7CEFC46509%2E1%7C.for.40475-43005.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.40475-43005.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.40475-43005.gi%7C284092869%7Cgb%7CEFC46509%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094373%7Cgb%7CEFC48007%2E1%7C.for.41096-42963.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.41096-42963.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.41096-42963.gi%7C284094373%7Cgb%7CEFC48007%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096359%7Cgb%7CEFC49987%2E1%7C.for.42289-45022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.42289-45022.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.42289-45022.gi%7C284096359%7Cgb%7CEFC49987%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090005%7Cgb%7CEFC43659%2E1%7C.for.46531-48269.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.46531-48269.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.46531-48269.gi%7C284090005%7Cgb%7CEFC43659%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087223%7Cgb%7CEFC40894%2E1%7C.for.50687-52053.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.50687-52053.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.50687-52053.gi%7C284087223%7Cgb%7CEFC40894%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080992%7Cgb%7CEFC35256%2E1%7C.for.53422-54539.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.53422-54539.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.53422-54539.gi%7C284080992%7Cgb%7CEFC35256%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.55918-58235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55918-58235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55918-58235.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.for.55918-58208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55918-58208.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55918-58208.gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.for.55927-58211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55927-58211.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55927-58211.gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.for.55918-57080.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55918-57080.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55918-57080.gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.for.55963-57080.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55963-57080.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55963-57080.gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.for.55930-57101.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55930-57101.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55930-57101.gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.for.55918-58214.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55918-58214.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55918-58214.gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.for.55843-58235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55843-58235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55843-58235.gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090146%7Cgb%7CEFC43799%2E1%7C.for.55921-58211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55921-58211.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55921-58211.gi%7C284090146%7Cgb%7CEFC43799%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.for.55927-58559.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55927-58559.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55927-58559.gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.for.55873-58295.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55873-58295.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55873-58295.gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.for.55870-58211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55870-58211.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55870-58211.gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.for.55798-58208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55798-58208.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55798-58208.gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.for.55996-56951.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55996-56951.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55996-56951.gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086531%7Cgb%7CEFC40207%2E1%7C.for.55927-57146.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55927-57146.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55927-57146.gi%7C284086531%7Cgb%7CEFC40207%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.for.55834-58217.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55834-58217.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55834-58217.gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090143%7Cgb%7CEFC43796%2E1%7C.for.55921-58211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55921-58211.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55921-58211.gi%7C284090143%7Cgb%7CEFC43796%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.for.55930-58211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55930-58211.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55930-58211.gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080808%7Cgb%7CEFC35194%2E1%7C.for.55927-57038.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55927-57038.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55927-57038.gi%7C284080808%7Cgb%7CEFC35194%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.for.55963-57038.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55963-57038.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55963-57038.gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:11 now processing 0 total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:11 now processing 0 ...processing 0 of 17 ...processing 1 of 17 ...processing 2 of 17 ...processing 3 of 17 ...processing 4 of 17 ...processing 5 of 17 ...processing 6 of 17 ...processing 7 of 17 ...processing 8 of 17 ...processing 9 of 17 ...processing 10 of 17 ...processing 11 of 17 ...processing 12 of 17 ...processing 13 of 17 ...processing 14 of 17 ...processing 15 of 17 ...processing 16 of 17 total clusters:11 now processing 0 total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 total clusters:11 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 15 ...processing 1 of 15 ...processing 2 of 15 ...processing 3 of 15 ...processing 4 of 15 ...processing 5 of 15 ...processing 6 of 15 ...processing 7 of 15 ...processing 8 of 15 ...processing 9 of 15 ...processing 10 of 15 ...processing 11 of 15 ...processing 12 of 15 ...processing 13 of 15 ...processing 14 of 15 total clusters:7 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:7 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:15 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.0-825.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.0-825.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.0-825.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.2349-3127.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.2349-3127.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.2349-3127.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.4180-4964.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.4180-4964.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.4180-4964.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.7111-7995.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.7111-7995.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.7111-7995.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.9366-11049.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.9366-11049.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.9366-11049.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.24292-26057.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.24292-26057.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.24292-26057.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.27603-30800.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.27603-30800.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.27603-30800.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.36875-38681.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.36875-38681.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.36875-38681.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.40674-42805.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.40674-42805.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.40674-42805.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.50886-51853.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.50886-51853.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.50886-51853.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.53433-54340.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.53433-54340.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.53433-54340.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.56120-58359.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.56120-58359.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.56120-58359.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.64168-65110.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.64168-65110.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.64168-65110.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.4080-4900.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.4080-4900.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.4080-4900.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.18665-19754.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.18665-19754.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.18665-19754.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.22584-24083.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.22584-24083.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.22584-24083.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.30043-30904.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.30043-30904.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.30043-30904.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.31147-32360.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.31147-32360.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.31147-32360.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.33335-35934.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.33335-35934.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.33335-35934.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.38503-39487.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.38503-39487.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.38503-39487.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.42465-44822.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.42465-44822.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.42465-44822.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.45910-48232.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.45910-48232.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.45910-48232.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.52377-53169.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.52377-53169.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.52377-53169.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C5 Length: 131745 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:1 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:4 current j:0 j_size:4 current j:1 j_size:4 current j:2 j_size:4 current j:3 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C5.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C5.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:3 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4927%7Ccoatomer.for.1750-4580.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.1750-4580.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.1750-4580.Ar_EST_120301b_rep_c4927%7Ccoatomer.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c219%7Ccoatomer.for.1117-5675.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.1117-5675.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.1117-5675.Ar_EST_120301b_c219%7Ccoatomer.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5068%7Cprotein.for.999-2306.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.999-2306.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.999-2306.Ar_EST_120301b_rep_c5068%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1870%7Cshort-chain.for.7529-8815.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.7529-8815.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.7529-8815.Ar_EST_120301b_c1870%7Cshort-chain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13983%7Cglycerate.for.9016-10532.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9016-10532.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9016-10532.Ar_EST_120301b_c13983%7Cglycerate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2872%7Cglycerate.for.9011-10422.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9011-10422.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9011-10422.Ar_EST_120301b_c2872%7Cglycerate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1884%7Crho.for.9854-11280.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9854-11280.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9854-11280.Ar_EST_120301b_c1884%7Crho.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18292%7C---NA---.for.11079-12444.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.11079-12444.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.11079-12444.Ar_EST_120301b_c18292%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9251%7Cadenylate.for.11875-13224.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.11875-13224.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.11875-13224.Ar_EST_120301b_c9251%7Cadenylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1113%7Cprotein.for.15259-17252.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.15259-17252.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.15259-17252.120301b_Contig1113%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10689%7Cendonuclease.for.16859-18277.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.16859-18277.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.16859-18277.Ar_EST_120301b_c10689%7Cendonuclease.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11369%7Cphospholipase.for.21668-22878.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.21668-22878.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.21668-22878.Ar_EST_120301b_c11369%7Cphospholipase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18303%7Chypothetical.for.23197-24457.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.23197-24457.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.23197-24457.Ar_EST_120301b_c18303%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig495%7Cprotein.for.26089-27731.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.26089-27731.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.26089-27731.120301b_Contig495%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c738%7Chypothetical.for.25998-27627.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.25998-27627.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.25998-27627.Ar_EST_120301b_c738%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16831%7C---NA---.for.26248-27437.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.26248-27437.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.26248-27437.Ar_EST_120301b_c16831%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3170%7Crna-binding.for.29265-30841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.29265-30841.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.29265-30841.Ar_EST_120301b_c3170%7Crna-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18861%7Csplicing.for.30193-31519.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.30193-31519.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.30193-31519.Ar_EST_120301b_c18861%7Csplicing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18342%7Cehahb38tr.for.31682-32618.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.31682-32618.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.31682-32618.Ar_EST_120301b_rep_c18342%7Cehahb38tr.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig330%7Cactin.for.31093-33168.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.31093-33168.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.31093-33168.120301b_Contig330%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19138%7Chypothetical.for.33677-35187.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.33677-35187.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.33677-35187.Ar_EST_120301b_c19138%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9985%7Clipase.for.33305-34844.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.33305-34844.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.33305-34844.Ar_EST_120301b_c9985%7Clipase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16685%7Ctranslation.for.35667-37110.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.35667-37110.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.35667-37110.Ar_EST_120301b_c16685%7Ctranslation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20389%7Csepticolysin.for.36823-38079.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.36823-38079.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.36823-38079.Ar_EST_120301b_rep_c20389%7Csepticolysin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7158%7Csepticolysin.for.36723-38078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.36723-38078.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.36723-38078.Ar_EST_120301b_rep_c7158%7Csepticolysin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1100%7Csepticolysin.for.36741-38079.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.36741-38079.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.36741-38079.120301b_Contig1100%7Csepticolysin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12800%7Cserine.for.39700-41118.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.39700-41118.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.39700-41118.Ar_EST_120301b_c12800%7Cserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12672%7Cserine.for.40155-41467.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.40155-41467.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.40155-41467.Ar_EST_120301b_c12672%7Cserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14883%7C0156836.for.41198-42449.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.41198-42449.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.41198-42449.Ar_EST_120301b_c14883%7C0156836.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c576%7Cpeptidase.for.42583-44087.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.42583-44087.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.42583-44087.Ar_EST_120301b_c576%7Cpeptidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14550%7Crcc1.for.46429-47518.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.46429-47518.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.46429-47518.Ar_EST_120301b_c14550%7Crcc1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3172%7Cpelecinus.for.48613-50486.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.48613-50486.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.48613-50486.Ar_EST_120301b_c3172%7Cpelecinus.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig705%7Cprobable.for.49720-51442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.49720-51442.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.49720-51442.120301b_Contig705%7Cprobable.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17286%7C1112934329288.for.50896-52235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.50896-52235.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.50896-52235.Ar_EST_120301b_c17286%7C1112934329288.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1584%7Cmyosin.for.51678-53058.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.51678-53058.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.51678-53058.Ar_EST_120301b_c1584%7Cmyosin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18785%7Criboflavin.for.52842-53791.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.52842-53791.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.52842-53791.Ar_EST_120301b_rep_c18785%7Criboflavin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19995%7Criboflavin.for.52637-53860.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.52637-53860.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.52637-53860.Ar_EST_120301b_c19995%7Criboflavin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9495%7Cperoxisome.for.53340-55004.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.53340-55004.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.53340-55004.Ar_EST_120301b_c9495%7Cperoxisome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14%7Cfk506-binding.for.54242-56219.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.54242-56219.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.54242-56219.Ar_EST_120301b_c14%7Cfk506-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17894%7Cbg01.for.57293-58491.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.57293-58491.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.57293-58491.Ar_EST_120301b_c17894%7Cbg01.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2318%7Chermansky-pudlak.for.58366-59946.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.58366-59946.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.58366-59946.Ar_EST_120301b_c2318%7Chermansky-pudlak.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13264%7Cphysarum04582.for.60446-61409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.60446-61409.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.60446-61409.Ar_EST_120301b_c13264%7Cphysarum04582.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig569%7Ctrehalose-6-phosphate.for.60904-62620.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.60904-62620.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.60904-62620.120301b_Contig569%7Ctrehalose-6-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1192%7Chypothetical.for.74768-76995.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.74768-76995.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.74768-76995.120301b_Contig1192%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c940%7C1445745_5_c15_062.for.76417-77860.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.76417-77860.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.76417-77860.Ar_EST_120301b_c940%7C1445745_5_c15_062.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19216%7Ctg.for.77340-78465.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.77340-78465.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.77340-78465.Ar_EST_120301b_rep_c19216%7Ctg.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8441%7Cankyrin.for.78567-80270.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.78567-80270.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.78567-80270.Ar_EST_120301b_c8441%7Cankyrin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3062%7Cnacht.for.78319-79781.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.78319-79781.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.78319-79781.Ar_EST_120301b_c3062%7Cnacht.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig922%7Cthioredoxin.for.81853-83382.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.81853-83382.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.81853-83382.120301b_Contig922%7Cthioredoxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1406%7Chx129285.for.81417-82703.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.81417-82703.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.81417-82703.Ar_EST_120301b_c1406%7Chx129285.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c884%7Ccci.for.83640-85075.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.83640-85075.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.83640-85075.Ar_EST_120301b_c884%7Ccci.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3232%7Csimilarity.for.82705-84656.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.82705-84656.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.82705-84656.Ar_EST_120301b_c3232%7Csimilarity.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15594%7Csimilarity.for.83031-84107.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.83031-84107.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.83031-84107.Ar_EST_120301b_c15594%7Csimilarity.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10733%7C---NA---.for.84023-85289.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.84023-85289.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.84023-85289.Ar_EST_120301b_c10733%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig164%7Cmisexpression.for.86591-88318.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.86591-88318.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.86591-88318.120301b_Contig164%7Cmisexpression.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2393%7Chypothetical.for.86080-87393.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.86080-87393.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.86080-87393.Ar_EST_120301b_c2393%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3126%7Cprotein.for.87842-89519.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.87842-89519.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.87842-89519.Ar_EST_120301b_c3126%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12848%7Caldo.for.89750-91167.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.89750-91167.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.89750-91167.Ar_EST_120301b_c12848%7Caldo.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1669%7C%28aldo.for.89843-91300.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.89843-91300.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.89843-91300.Ar_EST_120301b_c1669%7C%28aldo.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9784%7Chypothetical.for.90835-92394.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.90835-92394.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.90835-92394.Ar_EST_120301b_c9784%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1376%7Cpredicted.for.92016-93662.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.92016-93662.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.92016-93662.120301b_Contig1376%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19862%7Cicpl20102_cw46_f06.for.92623-93606.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.92623-93606.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.92623-93606.Ar_EST_120301b_c19862%7Cicpl20102_cw46_f06.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1340%7C---NA---.for.93186-94487.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.93186-94487.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.93186-94487.Ar_EST_120301b_c1340%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1082%7C---NA---.for.94235-95710.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.94235-95710.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.94235-95710.Ar_EST_120301b_c1082%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig308%7Cnad.for.95110-97107.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.95110-97107.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.95110-97107.120301b_Contig308%7Cnad.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14271%7Crna.for.101533-102830.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.101533-102830.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.101533-102830.Ar_EST_120301b_c14271%7Crna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15637%7Chypothetical.for.103277-104452.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.103277-104452.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.103277-104452.Ar_EST_120301b_c15637%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16787%7Ccchu.for.103813-105125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.103813-105125.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.103813-105125.Ar_EST_120301b_c16787%7Ccchu.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1482%7C30s.for.104418-105784.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.104418-105784.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.104418-105784.Ar_EST_120301b_c1482%7C30s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1205%7Cmdf180_4-28dpi_hb383.for.105373-106697.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.105373-106697.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.105373-106697.Ar_EST_120301b_c1205%7Cmdf180_4-28dpi_hb383.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c938%7Cduo.for.105969-107823.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.105969-107823.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.105969-107823.Ar_EST_120301b_c938%7Cduo.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10147%7C---NA---.for.107361-108436.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.107361-108436.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.107361-108436.Ar_EST_120301b_c10147%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17005%7Cfp072159.for.108422-109291.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.108422-109291.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.108422-109291.Ar_EST_120301b_c17005%7Cfp072159.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12429%7Csubunit.for.108615-109926.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.108615-109926.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.108615-109926.Ar_EST_120301b_c12429%7Csubunit.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10392%7Canolis.for.109947-111462.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.109947-111462.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.109947-111462.Ar_EST_120301b_c10392%7Canolis.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16466%7Cxre.for.114425-115636.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.114425-115636.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.114425-115636.Ar_EST_120301b_c16466%7Cxre.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c196%7Cankyrin.for.113280-115250.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.113280-115250.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.113280-115250.Ar_EST_120301b_c196%7Cankyrin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11093%7Cdomain-containing.for.115928-117488.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.115928-117488.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.115928-117488.Ar_EST_120301b_c11093%7Cdomain-containing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11883%7Cfq355161.for.118590-120174.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.118590-120174.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.118590-120174.Ar_EST_120301b_c11883%7Cfq355161.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15305%7Cccif.for.120353-121637.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.120353-121637.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.120353-121637.Ar_EST_120301b_c15305%7Cccif.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8899%7Csumo.for.120923-122601.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.120923-122601.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.120923-122601.Ar_EST_120301b_c8899%7Csumo.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5398%7Cgadus.for.123283-124857.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.123283-124857.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.123283-124857.Ar_EST_120301b_rep_c5398%7Cgadus.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c594%7Ccbxu.for.122875-124833.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.122875-124833.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.122875-124833.Ar_EST_120301b_c594%7Ccbxu.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9877%7Cubiquitin-activating.for.126067-128042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.126067-128042.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.126067-128042.Ar_EST_120301b_c9877%7Cubiquitin-activating.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:60 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:60 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:60 now processing 0 total clusters:60 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:60 now processing 0 total clusters:60 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:60 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:60 now processing 0 total clusters:60 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:60 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:53 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:51 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:62 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:70 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:68 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:69 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:61 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:69 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:72 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:44 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092746%7Cgb%7CEFC46387%2E1%7C.for.1013-5621.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.1013-5621.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.1013-5621.gi%7C284092746%7Cgb%7CEFC46387%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083683%7Cgb%7CEFC37384%2E1%7C.for.5064-6702.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.5064-6702.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.5064-6702.gi%7C284083683%7Cgb%7CEFC37384%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088407%7Cgb%7CEFC42071%2E1%7C.for.8543-10559.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.8543-10559.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.8543-10559.gi%7C284088407%7Cgb%7CEFC42071%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085812%7Cgb%7CEFC39493%2E1%7C.for.9874-11247.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11247.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11247.gi%7C284085812%7Cgb%7CEFC39493%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090220%7Cgb%7CEFC43873%2E1%7C.for.9862-11235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9862-11235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9862-11235.gi%7C284090220%7Cgb%7CEFC43873%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095573%7Cgb%7CEFC49203%2E1%7C.for.9877-11238.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9877-11238.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9877-11238.gi%7C284095573%7Cgb%7CEFC49203%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083905%7Cgb%7CEFC37603%2E1%7C.for.9853-11214.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9853-11214.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9853-11214.gi%7C284083905%7Cgb%7CEFC37603%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092862%7Cgb%7CEFC46502%2E1%7C.for.9874-11241.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11241.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11241.gi%7C284092862%7Cgb%7CEFC46502%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089636%7Cgb%7CEFC43292%2E1%7C.for.9874-11250.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11250.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11250.gi%7C284089636%7Cgb%7CEFC43292%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081627%7Cgb%7CEFC35562%2E1%7C.for.9874-10892.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-10892.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-10892.gi%7C284081627%7Cgb%7CEFC35562%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093011%7Cgb%7CEFC46651%2E1%7C.for.9877-11235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9877-11235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9877-11235.gi%7C284093011%7Cgb%7CEFC46651%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090598%7Cgb%7CEFC44249%2E1%7C.for.9868-11235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9868-11235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9868-11235.gi%7C284090598%7Cgb%7CEFC44249%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093381%7Cgb%7CEFC47019%2E1%7C.for.9865-11244.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9865-11244.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9865-11244.gi%7C284093381%7Cgb%7CEFC47019%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087750%7Cgb%7CEFC41418%2E1%7C.for.9874-11241.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11241.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11241.gi%7C284087750%7Cgb%7CEFC41418%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097171%7Cgb%7CEFC50798%2E1%7C.for.9955-11235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9955-11235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9955-11235.gi%7C284097171%7Cgb%7CEFC50798%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084253%7Cgb%7CEFC37948%2E1%7C.for.9874-11247.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11247.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11247.gi%7C284084253%7Cgb%7CEFC37948%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082060%7Cgb%7CEFC35846%2E1%7C.for.9874-11082.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11082.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11082.gi%7C284082060%7Cgb%7CEFC35846%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089921%7Cgb%7CEFC43576%2E1%7C.for.10142-11211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.10142-11211.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.10142-11211.gi%7C284089921%7Cgb%7CEFC43576%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081289%7Cgb%7CEFC35375%2E1%7C.for.9874-11247.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11247.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11247.gi%7C284081289%7Cgb%7CEFC35375%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087888%7Cgb%7CEFC41555%2E1%7C.for.9868-11307.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9868-11307.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9868-11307.gi%7C284087888%7Cgb%7CEFC41555%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090604%7Cgb%7CEFC44255%2E1%7C.for.9874-11235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11235.gi%7C284090604%7Cgb%7CEFC44255%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093718%7Cgb%7CEFC47355%2E1%7C.for.9868-11235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9868-11235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9868-11235.gi%7C284093718%7Cgb%7CEFC47355%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092603%7Cgb%7CEFC46244%2E1%7C.for.9952-11253.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9952-11253.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9952-11253.gi%7C284092603%7Cgb%7CEFC46244%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095901%7Cgb%7CEFC49530%2E1%7C.for.15309-17452.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.15309-17452.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.15309-17452.gi%7C284095901%7Cgb%7CEFC49530%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.for.18476-19500.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18476-19500.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18476-19500.gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083993%7Cgb%7CEFC37690%2E1%7C.for.18125-19958.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18125-19958.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18125-19958.gi%7C284083993%7Cgb%7CEFC37690%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094055%7Cgb%7CEFC47690%2E1%7C.for.18263-19883.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18263-19883.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18263-19883.gi%7C284094055%7Cgb%7CEFC47690%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090579%7Cgb%7CEFC44230%2E1%7C.for.18263-19865.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18263-19865.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18263-19865.gi%7C284090579%7Cgb%7CEFC44230%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081402%7Cgb%7CEFC35430%2E1%7C.for.18428-19476.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18428-19476.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18428-19476.gi%7C284081402%7Cgb%7CEFC35430%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090447%7Cgb%7CEFC44099%2E1%7C.for.18257-19922.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18257-19922.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18257-19922.gi%7C284090447%7Cgb%7CEFC44099%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092196%7Cgb%7CEFC45839%2E1%7C.for.18269-19883.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18269-19883.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18269-19883.gi%7C284092196%7Cgb%7CEFC45839%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089069%7Cgb%7CEFC42729%2E1%7C.for.18263-19922.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18263-19922.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18263-19922.gi%7C284089069%7Cgb%7CEFC42729%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090909%7Cgb%7CEFC44558%2E1%7C.for.18458-19509.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18458-19509.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18458-19509.gi%7C284090909%7Cgb%7CEFC44558%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089047%7Cgb%7CEFC42707%2E1%7C.for.18263-19919.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18263-19919.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18263-19919.gi%7C284089047%7Cgb%7CEFC42707%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083998%7Cgb%7CEFC37695%2E1%7C.for.18269-19865.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18269-19865.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18269-19865.gi%7C284083998%7Cgb%7CEFC37695%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090070%7Cgb%7CEFC43724%2E1%7C.for.18380-19865.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18380-19865.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18380-19865.gi%7C284090070%7Cgb%7CEFC43724%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093175%7Cgb%7CEFC46814%2E1%7C.for.21409-23737.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.21409-23737.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.21409-23737.gi%7C284093175%7Cgb%7CEFC46814%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091296%7Cgb%7CEFC44943%2E1%7C.for.29978-31002.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.29978-31002.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.29978-31002.gi%7C284091296%7Cgb%7CEFC44943%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094539%7Cgb%7CEFC48173%2E1%7C.for.32411-34593.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.32411-34593.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.32411-34593.gi%7C284094539%7Cgb%7CEFC48173%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082502%7Cgb%7CEFC36219%2E1%7C.for.34706-36121.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.34706-36121.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.34706-36121.gi%7C284082502%7Cgb%7CEFC36219%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085459%7Cgb%7CEFC39143%2E1%7C.for.35447-37131.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.35447-37131.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.35447-37131.gi%7C284085459%7Cgb%7CEFC39143%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086511%7Cgb%7CEFC40187%2E1%7C.for.39688-41618.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.39688-41618.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.39688-41618.gi%7C284086511%7Cgb%7CEFC40187%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091530%7Cgb%7CEFC45176%2E1%7C.for.39691-41822.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.39691-41822.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.39691-41822.gi%7C284091530%7Cgb%7CEFC45176%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083230%7Cgb%7CEFC36935%2E1%7C.for.39673-41822.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.39673-41822.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.39673-41822.gi%7C284083230%7Cgb%7CEFC36935%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089725%7Cgb%7CEFC43381%2E1%7C.for.49693-51284.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.49693-51284.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.49693-51284.gi%7C284089725%7Cgb%7CEFC43381%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097201%7Cgb%7CEFC50828%2E1%7C.for.52586-53864.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.52586-53864.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.52586-53864.gi%7C284097201%7Cgb%7CEFC50828%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081386%7Cgb%7CEFC35420%2E1%7C.for.55094-56238.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55094-56238.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55094-56238.gi%7C284081386%7Cgb%7CEFC35420%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097061%7Cgb%7CEFC50688%2E1%7C.for.55097-56157.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55097-56157.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55097-56157.gi%7C284097061%7Cgb%7CEFC50688%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095747%7Cgb%7CEFC49377%2E1%7C.for.55097-56211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55097-56211.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55097-56211.gi%7C284095747%7Cgb%7CEFC49377%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088080%7Cgb%7CEFC41746%2E1%7C.for.55097-56232.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55097-56232.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55097-56232.gi%7C284088080%7Cgb%7CEFC41746%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092504%7Cgb%7CEFC46146%2E1%7C.for.55103-56157.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55103-56157.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55103-56157.gi%7C284092504%7Cgb%7CEFC46146%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090684%7Cgb%7CEFC44334%2E1%7C.for.55094-56238.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55094-56238.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55094-56238.gi%7C284090684%7Cgb%7CEFC44334%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087392%7Cgb%7CEFC41062%2E1%7C.for.58401-60770.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.58401-60770.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.58401-60770.gi%7C284087392%7Cgb%7CEFC41062%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089364%7Cgb%7CEFC43022%2E1%7C.for.60972-62488.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.60972-62488.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.60972-62488.gi%7C284089364%7Cgb%7CEFC43022%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081650%7Cgb%7CEFC35573%2E1%7C.for.62355-63987.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.62355-63987.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.62355-63987.gi%7C284081650%7Cgb%7CEFC35573%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091868%7Cgb%7CEFC45513%2E1%7C.for.62271-63430.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.62271-63430.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.62271-63430.gi%7C284091868%7Cgb%7CEFC45513%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082307%7Cgb%7CEFC36042%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284082307%7Cgb%7CEFC36042%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093856%7Cgb%7CEFC47492%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284093856%7Cgb%7CEFC47492%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085911%7Cgb%7CEFC39591%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284085911%7Cgb%7CEFC39591%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085981%7Cgb%7CEFC39661%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284085981%7Cgb%7CEFC39661%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087491%7Cgb%7CEFC41160%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284087491%7Cgb%7CEFC41160%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093843%7Cgb%7CEFC47479%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284093843%7Cgb%7CEFC47479%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095026%7Cgb%7CEFC48658%2E1%7C.for.71509-72458.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72458.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72458.gi%7C284095026%7Cgb%7CEFC48658%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090245%7Cgb%7CEFC43898%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284090245%7Cgb%7CEFC43898%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087527%7Cgb%7CEFC41196%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284087527%7Cgb%7CEFC41196%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083958%7Cgb%7CEFC37656%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284083958%7Cgb%7CEFC37656%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095626%7Cgb%7CEFC49256%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284095626%7Cgb%7CEFC49256%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089356%7Cgb%7CEFC43014%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284089356%7Cgb%7CEFC43014%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085878%7Cgb%7CEFC39558%2E1%7C.for.78714-80903.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.78714-80903.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.78714-80903.gi%7C284085878%7Cgb%7CEFC39558%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093226%7Cgb%7CEFC46865%2E1%7C.for.80969-83266.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.80969-83266.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.80969-83266.gi%7C284093226%7Cgb%7CEFC46865%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091245%7Cgb%7CEFC44893%2E1%7C.for.82819-84356.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.82819-84356.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.82819-84356.gi%7C284091245%7Cgb%7CEFC44893%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C11466181%7Cref%7CNP_066504%2E1%7C.for.104625-105715.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.104625-105715.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.104625-105715.gi%7C11466181%7Cref%7CNP_066504%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C10444216%7Cgb%7CAAG17782%2E1%7CAF288092_7.for.104625-105715.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.104625-105715.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.104625-105715.gi%7C10444216%7Cgb%7CAAG17782%2E1%7CAF288092_7.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096956%7Cgb%7CEFC50583%2E1%7C.for.104946-106012.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.104946-106012.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.104946-106012.gi%7C284096956%7Cgb%7CEFC50583%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084495%7Cgb%7CEFC38187%2E1%7C.for.117674-118960.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.117674-118960.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.117674-118960.gi%7C284084495%7Cgb%7CEFC38187%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088316%7Cgb%7CEFC41980%2E1%7C.for.124126-128091.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.124126-128091.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.124126-128091.gi%7C284088316%7Cgb%7CEFC41980%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:20 now processing 0 ...processing 0 of 18 ...processing 1 of 18 ...processing 2 of 18 ...processing 3 of 18 ...processing 4 of 18 ...processing 5 of 18 ...processing 6 of 18 ...processing 7 of 18 ...processing 8 of 18 ...processing 9 of 18 ...processing 10 of 18 ...processing 11 of 18 ...processing 12 of 18 ...processing 13 of 18 ...processing 14 of 18 ...processing 15 of 18 ...processing 16 of 18 ...processing 17 of 18 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:20 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:20 now processing 0 ...processing 0 of 12 ...processing 1 of 12 ...processing 2 of 12 ...processing 3 of 12 ...processing 4 of 12 ...processing 5 of 12 ...processing 6 of 12 ...processing 7 of 12 ...processing 8 of 12 ...processing 9 of 12 ...processing 10 of 12 ...processing 11 of 12 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:12 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 12 ...processing 1 of 12 ...processing 2 of 12 ...processing 3 of 12 ...processing 4 of 12 ...processing 5 of 12 ...processing 6 of 12 ...processing 7 of 12 ...processing 8 of 12 ...processing 9 of 12 ...processing 10 of 12 ...processing 11 of 12 total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:12 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 10 ...processing 1 of 10 ...processing 2 of 10 ...processing 3 of 10 ...processing 4 of 10 ...processing 5 of 10 ...processing 6 of 10 ...processing 7 of 10 ...processing 8 of 10 ...processing 9 of 10 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:24 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:24 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:24 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:24 now processing 0 total clusters:24 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:24 now processing 0 total clusters:24 now processing 0 total clusters:24 now processing 0 total clusters:24 now processing 0 total clusters:24 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:24 now processing 0 total clusters:24 now processing 0 total clusters:24 now processing 0 total clusters:24 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:24 now processing 0 total clusters:24 now processing 0 total clusters:24 now processing 0 total clusters:24 now processing 0 total clusters:24 now processing 0 total clusters:24 now processing 0 total clusters:24 now processing 0 total clusters:24 now processing 0 total clusters:24 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:24 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.7728-8620.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.7728-8620.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.7728-8620.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.10049-13027.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.10049-13027.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.10049-13027.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.15458-18087.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.15458-18087.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.15458-18087.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.21608-23537.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.21608-23537.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.21608-23537.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.26197-27427.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.26197-27427.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.26197-27427.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.29461-32968.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.29461-32968.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.29461-32968.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.36922-37878.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.36922-37878.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.36922-37878.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.39872-42249.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.39872-42249.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.39872-42249.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.42782-43887.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.42782-43887.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.42782-43887.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.46614-47318.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.46614-47318.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.46614-47318.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.48812-50286.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.48812-50286.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.48812-50286.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.51095-52858.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.51095-52858.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.51095-52858.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.53539-54804.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.53539-54804.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.53539-54804.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.57492-58310.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.57492-58310.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.57492-58310.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.60645-61220.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.60645-61220.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.60645-61220.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.62470-63787.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.62470-63787.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.62470-63787.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.71310-72258.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.71310-72258.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.71310-72258.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.74962-76795.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.74962-76795.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.74962-76795.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.78518-80070.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.78518-80070.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.78518-80070.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.81168-83182.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.81168-83182.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.81168-83182.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.86279-89319.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.86279-89319.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.86279-89319.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.89946-92194.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.89946-92194.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.89946-92194.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.101732-105584.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.101732-105584.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.101732-105584.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.108814-109726.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.108814-109726.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.108814-109726.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.110146-111262.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.110146-111262.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.110146-111262.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.116127-117288.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.116127-117288.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.116127-117288.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.118717-119974.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.118717-119974.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.118717-119974.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.120552-121441.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.120552-121441.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.120552-121441.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.123067-127891.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.123067-127891.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.123067-127891.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.1198-5475.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.1198-5475.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.1198-5475.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.8742-10359.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.8742-10359.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.8742-10359.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.18324-19758.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.18324-19758.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.18324-19758.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.23392-24257.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.23392-24257.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.23392-24257.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.33498-36931.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.33498-36931.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.33498-36931.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.49892-51242.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.49892-51242.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.49892-51242.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.52785-53664.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.52785-53664.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.52785-53664.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.54441-56032.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.54441-56032.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.54441-56032.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.58565-60570.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.58565-60570.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.58565-60570.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.61171-62288.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.61171-62288.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.61171-62288.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.76614-77660.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.76614-77660.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.76614-77660.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/40_0.82904-85103.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/40_0.82904-85103.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/40_0.82904-85103.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/41_0.93385-94287.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/41_0.93385-94287.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/41_0.93385-94287.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/42_0.94429-96907.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/42_0.94429-96907.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/42_0.94429-96907.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/43_0.105145-108236.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/43_0.105145-108236.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/43_0.105145-108236.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/44_0.113479-115436.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/44_0.113479-115436.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/44_0.113479-115436.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/45_0.121122-122453.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/45_0.121122-122453.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/45_0.121122-122453.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C6 Length: 122113 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:3 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:3 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:2 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:2 current j:0 j_size:2 current j:1 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C6.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C6.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9097%7Cendothelin-converting.for.123-1393.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.123-1393.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.123-1393.Ar_EST_120301b_c9097%7Cendothelin-converting.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1238%7Cchromosome.for.803-3026.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.803-3026.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.803-3026.Ar_EST_120301b_c1238%7Cchromosome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c561%7Chypothetical.for.2254-3973.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.2254-3973.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.2254-3973.Ar_EST_120301b_c561%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7092%7Chypothetical.for.2313-3425.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.2313-3425.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.2313-3425.Ar_EST_120301b_rep_c7092%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8999%7C---NA---.for.7519-9225.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.7519-9225.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.7519-9225.Ar_EST_120301b_c8999%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13174%7Cadp-ribosylation.for.15703-16832.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.15703-16832.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.15703-16832.Ar_EST_120301b_rep_c13174%7Cadp-ribosylation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1689%7Cvacuolar.for.15336-16737.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.15336-16737.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.15336-16737.Ar_EST_120301b_c1689%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9681%7Cvacuolar.for.15970-17826.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.15970-17826.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.15970-17826.Ar_EST_120301b_c9681%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14346%7Cvacuolar.for.17201-18217.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.17201-18217.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.17201-18217.Ar_EST_120301b_c14346%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3137%7Cdelta-1-pyrroline-5-carboxylate.for.19234-20841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.19234-20841.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.19234-20841.Ar_EST_120301b_c3137%7Cdelta-1-pyrroline-5-carboxylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18750%7Cdelta-1-pyrroline-5-carboxylate.for.19121-20728.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.19121-20728.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.19121-20728.Ar_EST_120301b_c18750%7Cdelta-1-pyrroline-5-carboxylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2477%7Cdelta-1-pyrroline-5-carboxylate.for.18215-20376.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.18215-20376.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.18215-20376.Ar_EST_120301b_c2477%7Cdelta-1-pyrroline-5-carboxylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19978%7Cdihydrolipoamide.for.21846-23160.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.21846-23160.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.21846-23160.Ar_EST_120301b_c19978%7Cdihydrolipoamide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig128%7Cdihydrolipoamide.for.20387-22977.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.20387-22977.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.20387-22977.120301b_Contig128%7Cdihydrolipoamide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8416%7Ctwo-component.for.22663-23931.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.22663-23931.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.22663-23931.Ar_EST_120301b_c8416%7Ctwo-component.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1919%7Csurface.for.24471-26129.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.24471-26129.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.24471-26129.Ar_EST_120301b_c1919%7Csurface.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17688%7Calpha-galactosidase.for.26917-28272.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.26917-28272.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.26917-28272.Ar_EST_120301b_c17688%7Calpha-galactosidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2981%7Cras.for.37609-39072.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.37609-39072.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.37609-39072.Ar_EST_120301b_c2981%7Cras.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11131%7Cras.for.36977-38575.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.36977-38575.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.36977-38575.Ar_EST_120301b_c11131%7Cras.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3153%7Cras.for.36079-37994.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.36079-37994.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.36079-37994.Ar_EST_120301b_c3153%7Cras.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2631%7Crasgef.for.38082-39579.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.38082-39579.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.38082-39579.Ar_EST_120301b_c2631%7Crasgef.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11259%7Chypothetical.for.39486-40750.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.39486-40750.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.39486-40750.Ar_EST_120301b_c11259%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14312%7Cmitochondrial.for.41003-42418.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.41003-42418.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.41003-42418.Ar_EST_120301b_c14312%7Cmitochondrial.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18904%7Cembryof101113a3.for.42698-44071.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.42698-44071.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.42698-44071.Ar_EST_120301b_rep_c18904%7Cembryof101113a3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16334%7Ccazo.for.45899-46844.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45899-46844.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45899-46844.Ar_EST_120301b_rep_c16334%7Ccazo.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig486%7Cmitochondrial.for.45155-47138.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45155-47138.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45155-47138.120301b_Contig486%7Cmitochondrial.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19473%7Ctrans-2-enoyl-.for.45838-46890.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45838-46890.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45838-46890.Ar_EST_120301b_c19473%7Ctrans-2-enoyl-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19766%7Ctrans-2-enoyl-.for.45298-46431.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45298-46431.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45298-46431.Ar_EST_120301b_rep_c19766%7Ctrans-2-enoyl-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13758%7Csuperoxide.for.46353-47705.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.46353-47705.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.46353-47705.Ar_EST_120301b_c13758%7Csuperoxide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15340%7C---NA---.for.48138-49353.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.48138-49353.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.48138-49353.Ar_EST_120301b_c15340%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12253%7Ccell.for.50027-51427.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.50027-51427.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.50027-51427.Ar_EST_120301b_c12253%7Ccell.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3614%7Ctryptophan.for.51706-53464.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.51706-53464.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.51706-53464.Ar_EST_120301b_c3614%7Ctryptophan.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3246%7Cbp441934.for.53432-54894.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.53432-54894.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.53432-54894.Ar_EST_120301b_c3246%7Cbp441934.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1844%7Cprotein.for.53045-54578.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.53045-54578.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.53045-54578.Ar_EST_120301b_c1844%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13342%7C---NA---.for.54901-55868.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.54901-55868.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.54901-55868.Ar_EST_120301b_c13342%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17156%7Ckiaa1052.for.55079-56460.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.55079-56460.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.55079-56460.Ar_EST_120301b_c17156%7Ckiaa1052.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12715%7Cfq318461.for.62217-63618.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.62217-63618.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.62217-63618.Ar_EST_120301b_c12715%7Cfq318461.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15940%7Cconserved.for.63630-65002.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.63630-65002.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.63630-65002.Ar_EST_120301b_c15940%7Cconserved.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1362%7C---NA---.for.64492-65876.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.64492-65876.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.64492-65876.Ar_EST_120301b_c1362%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15949%7C---NA---.for.68482-69658.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.68482-69658.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.68482-69658.Ar_EST_120301b_rep_c15949%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2106%7Cklhrrc001_12-e02.for.68183-69812.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.68183-69812.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.68183-69812.Ar_EST_120301b_c2106%7Cklhrrc001_12-e02.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15340%7C---NA---.for.73015-74155.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.73015-74155.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.73015-74155.Ar_EST_120301b_c15340%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20087%7Cprag-.for.74208-75368.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.74208-75368.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.74208-75368.Ar_EST_120301b_rep_c20087%7Cprag-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4808%7Cprag-.for.74191-75388.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.74191-75388.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.74191-75388.Ar_EST_120301b_rep_c4808%7Cprag-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8841%7Cag2_p7_l13_m13r.for.79972-81811.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.79972-81811.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.79972-81811.Ar_EST_120301b_c8841%7Cag2_p7_l13_m13r.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4471%7Cshort-chain.for.81454-83106.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.81454-83106.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.81454-83106.Ar_EST_120301b_rep_c4471%7Cshort-chain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5840%7Cshort-chain.for.81555-83050.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.81555-83050.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.81555-83050.Ar_EST_120301b_rep_c5840%7Cshort-chain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10307%7Cshort-chain.for.81484-82721.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.81484-82721.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.81484-82721.Ar_EST_120301b_rep_c10307%7Cshort-chain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig656%7Carmadillo.for.91033-93810.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.91033-93810.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.91033-93810.120301b_Contig656%7Carmadillo.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7896%7Cprotein.for.93047-95284.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.93047-95284.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.93047-95284.Ar_EST_120301b_c7896%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14083%7Chypothetical.for.97265-98467.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.97265-98467.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.97265-98467.Ar_EST_120301b_c14083%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14686%7Chypothetical.for.97297-98350.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.97297-98350.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.97297-98350.Ar_EST_120301b_c14686%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2116%7Chat.for.97324-98663.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.97324-98663.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.97324-98663.Ar_EST_120301b_c2116%7Chat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15340%7C---NA---.for.98833-100062.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.98833-100062.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.98833-100062.Ar_EST_120301b_c15340%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4652%7Catp-dependent.for.99963-102250.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.99963-102250.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.99963-102250.Ar_EST_120301b_rep_c4652%7Catp-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14242%7Catp.for.100109-101104.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.100109-101104.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.100109-101104.Ar_EST_120301b_c14242%7Catp.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12029%7Cpirin-related.for.102587-103992.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.102587-103992.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.102587-103992.Ar_EST_120301b_c12029%7Cpirin-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8398%7Cnadh.for.103646-104832.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.103646-104832.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.103646-104832.Ar_EST_120301b_rep_c8398%7Cnadh.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c775%7Cnadh.for.103680-104925.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.103680-104925.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.103680-104925.Ar_EST_120301b_c775%7Cnadh.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16811%7Cprotein.for.104900-106748.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.104900-106748.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.104900-106748.Ar_EST_120301b_c16811%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig532%7Cdnaj.for.108502-110436.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108502-110436.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108502-110436.120301b_Contig532%7Cdnaj.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5627%7Cdnaj.for.108299-110431.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108299-110431.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108299-110431.Ar_EST_120301b_rep_c5627%7Cdnaj.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6751%7Cdnaj.for.108406-110044.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108406-110044.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108406-110044.Ar_EST_120301b_rep_c6751%7Cdnaj.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19114%7Cccih.for.110438-111717.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.110438-111717.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.110438-111717.Ar_EST_120301b_c19114%7Cccih.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8278%7Ccomplex.for.110596-111614.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.110596-111614.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.110596-111614.Ar_EST_120301b_c8278%7Ccomplex.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16738%7Cprotein.for.111320-112663.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.111320-112663.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.111320-112663.Ar_EST_120301b_c16738%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4485%7Clate.for.121338-122113.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.121338-122113.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.121338-122113.Ar_EST_120301b_rep_c4485%7Clate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6023%7Chypothetical.for.121423-122113.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.121423-122113.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.121423-122113.Ar_EST_120301b_rep_c6023%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12513%7Cantifreeze.for.121306-122113.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.121306-122113.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.121306-122113.Ar_EST_120301b_rep_c12513%7Cantifreeze.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:71 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:53 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:58 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:78 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:59 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:72 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:67 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:66 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:50 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088158%7Cgb%7CEFC41823%2E1%7C.for.2365-4055.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.2365-4055.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.2365-4055.gi%7C284088158%7Cgb%7CEFC41823%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088143%7Cgb%7CEFC41808%2E1%7C.for.3371-6960.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.3371-6960.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.3371-6960.gi%7C284088143%7Cgb%7CEFC41808%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088065%7Cgb%7CEFC41731%2E1%7C.for.15266-18233.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.15266-18233.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.15266-18233.gi%7C284088065%7Cgb%7CEFC41731%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088066%7Cgb%7CEFC41732%2E1%7C.for.17441-18522.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.17441-18522.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.17441-18522.gi%7C284088066%7Cgb%7CEFC41732%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092276%7Cgb%7CEFC45919%2E1%7C.for.18360-20850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.18360-20850.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.18360-20850.gi%7C284092276%7Cgb%7CEFC45919%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094295%7Cgb%7CEFC47929%2E1%7C.for.20588-23148.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.20588-23148.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.20588-23148.gi%7C284094295%7Cgb%7CEFC47929%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094355%7Cgb%7CEFC47989%2E1%7C.for.20627-22068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.20627-22068.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.20627-22068.gi%7C284094355%7Cgb%7CEFC47989%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094493%7Cgb%7CEFC48127%2E1%7C.for.20579-23154.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.20579-23154.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.20579-23154.gi%7C284094493%7Cgb%7CEFC48127%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084633%7Cgb%7CEFC38324%2E1%7C.for.36113-38819.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.36113-38819.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.36113-38819.gi%7C284084633%7Cgb%7CEFC38324%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097160%7Cgb%7CEFC50787%2E1%7C.for.41048-43365.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.41048-43365.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.41048-43365.gi%7C284097160%7Cgb%7CEFC50787%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083887%7Cgb%7CEFC37585%2E1%7C.for.43995-45841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.43995-45841.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.43995-45841.gi%7C284083887%7Cgb%7CEFC37585%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088044%7Cgb%7CEFC41710%2E1%7C.for.45165-46912.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45165-46912.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45165-46912.gi%7C284088044%7Cgb%7CEFC41710%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083596%7Cgb%7CEFC37298%2E1%7C.for.46621-48068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.46621-48068.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.46621-48068.gi%7C284083596%7Cgb%7CEFC37298%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083542%7Cgb%7CEFC37244%2E1%7C.for.46621-48068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.46621-48068.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.46621-48068.gi%7C284083542%7Cgb%7CEFC37244%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085466%7Cgb%7CEFC39150%2E1%7C.for.51890-53804.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.51890-53804.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.51890-53804.gi%7C284085466%7Cgb%7CEFC39150%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088022%7Cgb%7CEFC41688%2E1%7C.for.55217-58498.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.55217-58498.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.55217-58498.gi%7C284088022%7Cgb%7CEFC41688%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094068%7Cgb%7CEFC47703%2E1%7C.for.57841-59500.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57841-59500.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57841-59500.gi%7C284094068%7Cgb%7CEFC47703%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093385%7Cgb%7CEFC47023%2E1%7C.for.58206-59248.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58206-59248.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58206-59248.gi%7C284093385%7Cgb%7CEFC47023%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091587%7Cgb%7CEFC45233%2E1%7C.for.58254-59266.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58254-59266.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58254-59266.gi%7C284091587%7Cgb%7CEFC45233%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093143%7Cgb%7CEFC46782%2E1%7C.for.57859-59518.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57859-59518.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57859-59518.gi%7C284093143%7Cgb%7CEFC46782%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085317%7Cgb%7CEFC39002%2E1%7C.for.58215-59287.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58215-59287.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58215-59287.gi%7C284085317%7Cgb%7CEFC39002%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.for.58239-59248.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58239-59248.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58239-59248.gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094136%7Cgb%7CEFC47771%2E1%7C.for.58200-59290.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58200-59290.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58200-59290.gi%7C284094136%7Cgb%7CEFC47771%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089231%7Cgb%7CEFC42890%2E1%7C.for.57859-59515.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57859-59515.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57859-59515.gi%7C284089231%7Cgb%7CEFC42890%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083993%7Cgb%7CEFC37690%2E1%7C.for.57853-59518.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57853-59518.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57853-59518.gi%7C284083993%7Cgb%7CEFC37690%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092366%7Cgb%7CEFC46008%2E1%7C.for.57856-59488.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57856-59488.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57856-59488.gi%7C284092366%7Cgb%7CEFC46008%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094875%7Cgb%7CEFC48508%2E1%7C.for.57856-59518.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57856-59518.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57856-59518.gi%7C284094875%7Cgb%7CEFC48508%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094163%7Cgb%7CEFC47798%2E1%7C.for.58227-59203.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58227-59203.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58227-59203.gi%7C284094163%7Cgb%7CEFC47798%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085986%7Cgb%7CEFC39666%2E1%7C.for.57838-59518.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57838-59518.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57838-59518.gi%7C284085986%7Cgb%7CEFC39666%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094832%7Cgb%7CEFC48465%2E1%7C.for.57856-59599.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57856-59599.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57856-59599.gi%7C284094832%7Cgb%7CEFC48465%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088361%7Cgb%7CEFC42025%2E1%7C.for.57841-59518.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57841-59518.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57841-59518.gi%7C284088361%7Cgb%7CEFC42025%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097221%7Cgb%7CEFC50848%2E1%7C.for.60697-61847.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.60697-61847.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.60697-61847.gi%7C284097221%7Cgb%7CEFC50848%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094035%7Cgb%7CEFC47670%2E1%7C.for.67414-68339.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.67414-68339.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.67414-68339.gi%7C284094035%7Cgb%7CEFC47670%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093439%7Cgb%7CEFC47077%2E1%7C.for.67289-68478.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.67289-68478.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.67289-68478.gi%7C284093439%7Cgb%7CEFC47077%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085372%7Cgb%7CEFC39056%2E1%7C.for.73551-74923.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.73551-74923.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.73551-74923.gi%7C284085372%7Cgb%7CEFC39056%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.75922-77087.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77087.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77087.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.for.75925-77141.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77141.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77141.gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.for.75922-77129.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77129.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77129.gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.for.75916-77078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75916-77078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75916-77078.gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.for.75928-77075.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75928-77075.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75928-77075.gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085992%7Cgb%7CEFC39672%2E1%7C.for.75850-77639.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75850-77639.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75850-77639.gi%7C284085992%7Cgb%7CEFC39672%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.for.75925-77453.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77453.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77453.gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.for.75931-77072.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75931-77072.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75931-77072.gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094669%7Cgb%7CEFC48302%2E1%7C.for.75925-77129.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77129.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77129.gi%7C284094669%7Cgb%7CEFC48302%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084257%7Cgb%7CEFC37951%2E1%7C.for.75928-77915.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75928-77915.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75928-77915.gi%7C284084257%7Cgb%7CEFC37951%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.for.75901-77078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75901-77078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75901-77078.gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.for.75892-77078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75892-77078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75892-77078.gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.for.75874-77078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75874-77078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75874-77078.gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090289%7Cgb%7CEFC43941%2E1%7C.for.75877-77117.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75877-77117.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75877-77117.gi%7C284090289%7Cgb%7CEFC43941%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.for.75922-77237.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77237.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77237.gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090138%7Cgb%7CEFC43791%2E1%7C.for.75919-77417.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75919-77417.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75919-77417.gi%7C284090138%7Cgb%7CEFC43791%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.for.75925-77075.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77075.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77075.gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082687%7Cgb%7CEFC36400%2E1%7C.for.75901-77087.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75901-77087.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75901-77087.gi%7C284082687%7Cgb%7CEFC36400%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.for.75922-77087.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77087.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77087.gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093864%7Cgb%7CEFC47500%2E1%7C.for.75916-77162.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75916-77162.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75916-77162.gi%7C284093864%7Cgb%7CEFC47500%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091293%7Cgb%7CEFC44940%2E1%7C.for.75916-77120.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75916-77120.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75916-77120.gi%7C284091293%7Cgb%7CEFC44940%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.for.75925-77108.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77108.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77108.gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097003%7Cgb%7CEFC50630%2E1%7C.for.75883-77078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75883-77078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75883-77078.gi%7C284097003%7Cgb%7CEFC50630%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.for.75835-77141.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75835-77141.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75835-77141.gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.for.75880-77120.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75880-77120.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75880-77120.gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.for.75925-77129.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77129.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77129.gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086956%7Cgb%7CEFC40629%2E1%7C.for.75817-77225.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75817-77225.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75817-77225.gi%7C284086956%7Cgb%7CEFC40629%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090146%7Cgb%7CEFC43799%2E1%7C.for.75817-77162.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75817-77162.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75817-77162.gi%7C284090146%7Cgb%7CEFC43799%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082747%7Cgb%7CEFC36459%2E1%7C.for.75907-77084.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75907-77084.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75907-77084.gi%7C284082747%7Cgb%7CEFC36459%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097002%7Cgb%7CEFC50629%2E1%7C.for.75907-77108.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75907-77108.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75907-77108.gi%7C284097002%7Cgb%7CEFC50629%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.for.75922-77195.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77195.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77195.gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.for.75745-77108.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75745-77108.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75745-77108.gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.for.75835-77150.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75835-77150.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75835-77150.gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.for.75922-77126.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77126.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77126.gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087408%7Cgb%7CEFC41078%2E1%7C.for.75922-77078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77078.gi%7C284087408%7Cgb%7CEFC41078%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.for.75919-77162.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75919-77162.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75919-77162.gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.for.75913-77195.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75913-77195.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75913-77195.gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.for.75922-77135.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77135.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77135.gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.for.76000-77069.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.76000-77069.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.76000-77069.gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092204%7Cgb%7CEFC45847%2E1%7C.for.75856-77078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75856-77078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75856-77078.gi%7C284092204%7Cgb%7CEFC45847%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090154%7Cgb%7CEFC43807%2E1%7C.for.75817-77147.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75817-77147.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75817-77147.gi%7C284090154%7Cgb%7CEFC43807%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.for.75928-77132.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75928-77132.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75928-77132.gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082694%7Cgb%7CEFC36407%2E1%7C.for.75922-77162.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77162.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77162.gi%7C284082694%7Cgb%7CEFC36407%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.for.75574-77138.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75574-77138.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75574-77138.gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090243%7Cgb%7CEFC43896%2E1%7C.for.75895-77156.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75895-77156.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75895-77156.gi%7C284090243%7Cgb%7CEFC43896%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085724%7Cgb%7CEFC39406%2E1%7C.for.75922-77267.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77267.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77267.gi%7C284085724%7Cgb%7CEFC39406%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.for.75913-77078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75913-77078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75913-77078.gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092203%7Cgb%7CEFC45846%2E1%7C.for.75925-77102.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77102.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77102.gi%7C284092203%7Cgb%7CEFC45846%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.for.75931-77159.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75931-77159.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75931-77159.gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090143%7Cgb%7CEFC43796%2E1%7C.for.75817-77237.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75817-77237.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75817-77237.gi%7C284090143%7Cgb%7CEFC43796%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.for.75931-77408.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75931-77408.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75931-77408.gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096176%7Cgb%7CEFC49805%2E1%7C.for.75916-77168.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75916-77168.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75916-77168.gi%7C284096176%7Cgb%7CEFC49805%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085350%7Cgb%7CEFC39035%2E1%7C.for.75922-77111.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77111.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77111.gi%7C284085350%7Cgb%7CEFC39035%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087676%7Cgb%7CEFC41344%2E1%7C.for.75685-77141.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75685-77141.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75685-77141.gi%7C284087676%7Cgb%7CEFC41344%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.for.75922-77051.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77051.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77051.gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085335%7Cgb%7CEFC39020%2E1%7C.for.81508-83189.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.81508-83189.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.81508-83189.gi%7C284085335%7Cgb%7CEFC39020%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096729%7Cgb%7CEFC50356%2E1%7C.for.90990-95305.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.90990-95305.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.90990-95305.gi%7C284096729%7Cgb%7CEFC50356%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092459%7Cgb%7CEFC46101%2E1%7C.for.95606-96932.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.95606-96932.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.95606-96932.gi%7C284092459%7Cgb%7CEFC46101%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096805%7Cgb%7CEFC50432%2E1%7C.for.100142-102232.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.100142-102232.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.100142-102232.gi%7C284096805%7Cgb%7CEFC50432%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082010%7Cgb%7CEFC35809%2E1%7C.for.100359-101497.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.100359-101497.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.100359-101497.gi%7C284082010%7Cgb%7CEFC35809%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089472%7Cgb%7CEFC43129%2E1%7C.for.102769-104123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.102769-104123.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.102769-104123.gi%7C284089472%7Cgb%7CEFC43129%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086520%7Cgb%7CEFC40196%2E1%7C.for.102769-104123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.102769-104123.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.102769-104123.gi%7C284086520%7Cgb%7CEFC40196%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091621%7Cgb%7CEFC45267%2E1%7C.for.103802-104936.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.103802-104936.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.103802-104936.gi%7C284091621%7Cgb%7CEFC45267%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087655%7Cgb%7CEFC41323%2E1%7C.for.108344-109338.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108344-109338.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108344-109338.gi%7C284087655%7Cgb%7CEFC41323%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094750%7Cgb%7CEFC48383%2E1%7C.for.108338-109371.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108338-109371.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108338-109371.gi%7C284094750%7Cgb%7CEFC48383%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096189%7Cgb%7CEFC49818%2E1%7C.for.108344-109335.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108344-109335.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108344-109335.gi%7C284096189%7Cgb%7CEFC49818%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087657%7Cgb%7CEFC41325%2E1%7C.for.108344-109332.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108344-109332.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108344-109332.gi%7C284087657%7Cgb%7CEFC41325%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097268%7Cgb%7CEFC50895%2E1%7C.for.108329-109263.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108329-109263.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108329-109263.gi%7C284097268%7Cgb%7CEFC50895%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096576%7Cgb%7CEFC50204%2E1%7C.for.108338-110424.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108338-110424.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108338-110424.gi%7C284096576%7Cgb%7CEFC50204%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 10 ...processing 1 of 10 ...processing 2 of 10 ...processing 3 of 10 ...processing 4 of 10 ...processing 5 of 10 ...processing 6 of 10 ...processing 7 of 10 ...processing 8 of 10 ...processing 9 of 10 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:21 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:21 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:21 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.322-3855.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.322-3855.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.322-3855.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.18414-22960.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.18414-22960.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.18414-22960.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.39685-40550.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.39685-40550.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.39685-40550.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.51811-53604.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.51811-53604.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.51811-53604.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.58040-59318.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.58040-59318.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.58040-59318.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.63829-65696.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.63829-65696.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.63829-65696.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.68382-69612.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.68382-69612.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.68382-69612.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.73154-75180.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.73154-75180.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.73154-75180.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.76115-77208.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.76115-77208.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.76115-77208.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.80171-82989.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.80171-82989.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.80171-82989.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.95805-96732.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.95805-96732.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.95805-96732.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.97430-98476.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.97430-98476.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.97430-98476.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.99032-99862.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.99032-99862.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.99032-99862.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.100162-102050.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.100162-102050.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.100162-102050.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.108498-110231.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.108498-110231.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.108498-110231.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.3570-6760.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.3570-6760.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.3570-6760.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.7718-9025.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.7718-9025.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.7718-9025.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.15465-18322.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.15465-18322.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.15465-18322.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.22851-23731.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.22851-23731.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.22851-23731.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.24670-25942.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.24670-25942.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.24670-25942.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.27116-28077.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.27116-28077.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.27116-28077.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.36278-38872.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.36278-38872.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.36278-38872.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.41202-43976.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.41202-43976.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.41202-43976.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.45364-47868.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.45364-47868.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.45364-47868.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.48329-49159.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.48329-49159.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.48329-49159.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.50226-51227.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.50226-51227.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.50226-51227.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.53242-54694.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.53242-54694.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.53242-54694.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.55100-56260.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.55100-56260.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.55100-56260.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.62416-63418.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.62416-63418.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.62416-63418.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.67488-68278.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.67488-68278.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.67488-68278.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.91189-95105.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.91189-95105.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.91189-95105.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.102786-104736.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.102786-104736.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.102786-104736.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.110637-111517.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.110637-111517.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.110637-111517.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.111519-112463.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.111519-112463.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.111519-112463.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C7 Length: 134939 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:55 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:38 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:33 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:53 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:43 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:56 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:37 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:44 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:53 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:40 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:10 current j:0 j_size:10 current j:1 j_size:10 current j:2 j_size:10 current j:3 j_size:10 current j:4 j_size:10 current j:5 j_size:10 current j:6 j_size:10 current j:7 j_size:10 current j:8 j_size:10 current j:9 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C7.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C7.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:13 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:6 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4485%7Clate.for.48-1639.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.48-1639.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.48-1639.Ar_EST_120301b_rep_c4485%7Clate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6023%7Chypothetical.for.133-1450.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.133-1450.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.133-1450.Ar_EST_120301b_rep_c6023%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12513%7Cantifreeze.for.16-1223.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.16-1223.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.16-1223.Ar_EST_120301b_rep_c12513%7Cantifreeze.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5923%7Cubiquitin.for.9-1509.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.9-1509.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.9-1509.Ar_EST_120301b_rep_c5923%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16388%7Crr1bs47tf.for.3291-4350.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.3291-4350.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.3291-4350.Ar_EST_120301b_c16388%7Crr1bs47tf.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11420%7Cc-4.for.12132-13718.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.12132-13718.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.12132-13718.Ar_EST_120301b_rep_c11420%7Cc-4.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6787%7Cc-4.for.11988-13571.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.11988-13571.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.11988-13571.Ar_EST_120301b_rep_c6787%7Cc-4.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11905%7Calpha.for.28565-29972.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.28565-29972.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.28565-29972.Ar_EST_120301b_c11905%7Calpha.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13284%7Cvacuolar.for.41047-42400.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.41047-42400.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.41047-42400.Ar_EST_120301b_c13284%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1689%7Cvacuolar.for.41819-43964.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.41819-43964.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.41819-43964.Ar_EST_120301b_c1689%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10762%7Cvacuolar.for.41624-42922.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.41624-42922.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.41624-42922.Ar_EST_120301b_c10762%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1374%7Cbase.for.45520-46917.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.45520-46917.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.45520-46917.Ar_EST_120301b_c1374%7Cbase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14203%7Cprotein.for.47262-48388.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.47262-48388.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.47262-48388.Ar_EST_120301b_c14203%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9392%7Calpha.for.49898-51378.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.49898-51378.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.49898-51378.Ar_EST_120301b_c9392%7Calpha.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1168%7Cprobable.for.55493-56901.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.55493-56901.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.55493-56901.Ar_EST_120301b_c1168%7Cprobable.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12300%7Cp-type.for.54632-56292.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54632-56292.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54632-56292.Ar_EST_120301b_c12300%7Cp-type.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13768%7Cp-type.for.56376-58077.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.56376-58077.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.56376-58077.Ar_EST_120301b_c13768%7Cp-type.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1093%7Cbiotinidase.for.57625-59775.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.57625-59775.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.57625-59775.120301b_Contig1093%7Cbiotinidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13105%7Cchloride.for.60848-62090.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.60848-62090.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.60848-62090.Ar_EST_120301b_c13105%7Cchloride.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11503%7Cchloride.for.61480-62910.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.61480-62910.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.61480-62910.Ar_EST_120301b_c11503%7Cchloride.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10696%7Cdynein.for.63572-64525.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.63572-64525.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.63572-64525.Ar_EST_120301b_c10696%7Cdynein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14804%7Cbp072254.for.69102-70291.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.69102-70291.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.69102-70291.Ar_EST_120301b_c14804%7Cbp072254.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3050%7Cviral.for.69616-71615.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.69616-71615.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.69616-71615.Ar_EST_120301b_c3050%7Cviral.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1063%7Cpredicted.for.70835-72329.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.70835-72329.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.70835-72329.Ar_EST_120301b_c1063%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2507%7C---NA---.for.71805-73298.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.71805-73298.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.71805-73298.Ar_EST_120301b_c2507%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c217%7Cprotein.for.80145-81818.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.80145-81818.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.80145-81818.Ar_EST_120301b_c217%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9172%7Cprotein.for.81335-83480.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.81335-83480.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.81335-83480.Ar_EST_120301b_c9172%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17870%7Ct-cell.for.89208-90299.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.89208-90299.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.89208-90299.Ar_EST_120301b_c17870%7Ct-cell.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11765%7Csolanesyl.for.92442-93928.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.92442-93928.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.92442-93928.Ar_EST_120301b_c11765%7Csolanesyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2548%7Cprotein-tyrosine.for.96640-97650.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.96640-97650.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.96640-97650.Ar_EST_120301b_c2548%7Cprotein-tyrosine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20445%7Cpyridine.for.97523-98612.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.97523-98612.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.97523-98612.Ar_EST_120301b_rep_c20445%7Cpyridine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c129%7Cnadh.for.97314-99592.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.97314-99592.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.97314-99592.Ar_EST_120301b_c129%7Cnadh.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19430%7Ctim50p.for.99275-100655.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.99275-100655.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.99275-100655.Ar_EST_120301b_c19430%7Ctim50p.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9578%7Ctim50p.for.99070-100422.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.99070-100422.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.99070-100422.Ar_EST_120301b_c9578%7Ctim50p.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3058%7Cprotein.for.100740-102763.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.100740-102763.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.100740-102763.Ar_EST_120301b_c3058%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12267%7Cat3g52930-like.for.102247-103458.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.102247-103458.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.102247-103458.Ar_EST_120301b_c12267%7Cat3g52930-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3718%7Cdienelactone.for.103910-105498.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.103910-105498.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.103910-105498.Ar_EST_120301b_c3718%7Cdienelactone.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20209%7Cribosomal.for.106394-107638.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106394-107638.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106394-107638.Ar_EST_120301b_rep_c20209%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3985%7C40s.for.105944-107655.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.105944-107655.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.105944-107655.Ar_EST_120301b_c3985%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5446%7Cribosomal.for.106398-107634.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106398-107634.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106398-107634.Ar_EST_120301b_rep_c5446%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18562%7C40s.for.106159-107137.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106159-107137.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106159-107137.Ar_EST_120301b_c18562%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6169%7C40s.for.105976-107196.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.105976-107196.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.105976-107196.Ar_EST_120301b_rep_c6169%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4920%7C40s.for.106100-107215.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106100-107215.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106100-107215.Ar_EST_120301b_rep_c4920%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6109%7C40s.for.106031-107257.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106031-107257.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106031-107257.Ar_EST_120301b_rep_c6109%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c785%7C5.for.109154-110971.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.109154-110971.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.109154-110971.Ar_EST_120301b_c785%7C5.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12153%7Cpredicted.for.110571-111898.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.110571-111898.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.110571-111898.Ar_EST_120301b_c12153%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12867%7C---NA---.for.122238-124136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.122238-124136.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.122238-124136.Ar_EST_120301b_c12867%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2650%7Cconserved.for.125607-127233.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.125607-127233.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.125607-127233.Ar_EST_120301b_c2650%7Cconserved.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2689%7Cnitella_74953_lrc40900_c.for.129843-131563.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.129843-131563.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.129843-131563.Ar_EST_120301b_c2689%7Cnitella_74953_lrc40900_c.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9169%7Cring.for.129877-133148.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.129877-133148.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.129877-133148.Ar_EST_120301b_c9169%7Cring.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12191%7Ccls_c.for.129992-133148.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.129992-133148.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.129992-133148.Ar_EST_120301b_c12191%7Ccls_c.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:30 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:30 now processing 0 total clusters:30 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:30 now processing 0 total clusters:30 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:30 now processing 0 total clusters:30 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:30 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:30 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:30 now processing 0 total clusters:30 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:30 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:29 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:42 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:42 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:57 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:48 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:38 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:38 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:47 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:33 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:32 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083691%7Cgb%7CEFC37392%2E1%7C.for.12012-13671.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.12012-13671.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.12012-13671.gi%7C284083691%7Cgb%7CEFC37392%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096883%7Cgb%7CEFC50510%2E1%7C.for.12012-13644.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.12012-13644.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.12012-13644.gi%7C284096883%7Cgb%7CEFC50510%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089652%7Cgb%7CEFC43308%2E1%7C.for.28293-29887.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.28293-29887.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.28293-29887.gi%7C284089652%7Cgb%7CEFC43308%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084087%7Cgb%7CEFC37783%2E1%7C.for.30299-33450.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33450.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33450.gi%7C284084087%7Cgb%7CEFC37783%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082474%7Cgb%7CEFC36192%2E1%7C.for.30299-33114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33114.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33114.gi%7C284082474%7Cgb%7CEFC36192%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082092%7Cgb%7CEFC35872%2E1%7C.for.30299-33114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33114.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33114.gi%7C284082092%7Cgb%7CEFC35872%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085337%7Cgb%7CEFC39022%2E1%7C.for.30350-33114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30350-33114.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30350-33114.gi%7C284085337%7Cgb%7CEFC39022%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083266%7Cgb%7CEFC36971%2E1%7C.for.30299-33114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33114.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33114.gi%7C284083266%7Cgb%7CEFC36971%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083922%7Cgb%7CEFC37620%2E1%7C.for.30440-33144.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30440-33144.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30440-33144.gi%7C284083922%7Cgb%7CEFC37620%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089683%7Cgb%7CEFC43339%2E1%7C.for.30443-33114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30443-33114.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30443-33114.gi%7C284089683%7Cgb%7CEFC43339%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082314%7Cgb%7CEFC36048%2E1%7C.for.30299-33114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33114.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33114.gi%7C284082314%7Cgb%7CEFC36048%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093921%7Cgb%7CEFC47557%2E1%7C.for.30299-33183.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33183.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33183.gi%7C284093921%7Cgb%7CEFC47557%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082806%7Cgb%7CEFC36517%2E1%7C.for.30443-33066.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30443-33066.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30443-33066.gi%7C284082806%7Cgb%7CEFC36517%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082136%7Cgb%7CEFC35906%2E1%7C.for.30299-33183.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33183.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33183.gi%7C284082136%7Cgb%7CEFC35906%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085875%7Cgb%7CEFC39555%2E1%7C.for.30440-33108.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30440-33108.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30440-33108.gi%7C284085875%7Cgb%7CEFC39555%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080810%7Cgb%7CEFC35195%2E1%7C.for.30419-32517.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30419-32517.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30419-32517.gi%7C284080810%7Cgb%7CEFC35195%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090094%7Cgb%7CEFC43748%2E1%7C.for.34017-35008.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.34017-35008.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.34017-35008.gi%7C284090094%7Cgb%7CEFC43748%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088066%7Cgb%7CEFC41732%2E1%7C.for.40616-41691.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.40616-41691.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.40616-41691.gi%7C284088066%7Cgb%7CEFC41732%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088065%7Cgb%7CEFC41731%2E1%7C.for.40911-43775.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.40911-43775.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.40911-43775.gi%7C284088065%7Cgb%7CEFC41731%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089788%7Cgb%7CEFC43443%2E1%7C.for.54064-58018.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54064-58018.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54064-58018.gi%7C284089788%7Cgb%7CEFC43443%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088559%7Cgb%7CEFC42222%2E1%7C.for.54067-57919.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57919.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57919.gi%7C284088559%7Cgb%7CEFC42222%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092821%7Cgb%7CEFC46461%2E1%7C.for.54040-58018.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54040-58018.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54040-58018.gi%7C284092821%7Cgb%7CEFC46461%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083022%7Cgb%7CEFC36730%2E1%7C.for.54067-57955.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57955.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57955.gi%7C284083022%7Cgb%7CEFC36730%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093552%7Cgb%7CEFC47189%2E1%7C.for.54067-57922.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57922.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57922.gi%7C284093552%7Cgb%7CEFC47189%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085695%7Cgb%7CEFC39377%2E1%7C.for.54067-57922.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57922.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57922.gi%7C284085695%7Cgb%7CEFC39377%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085694%7Cgb%7CEFC39376%2E1%7C.for.54067-57922.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57922.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57922.gi%7C284085694%7Cgb%7CEFC39376%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082133%7Cgb%7CEFC35904%2E1%7C.for.56298-57955.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.56298-57955.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.56298-57955.gi%7C284082133%7Cgb%7CEFC35904%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091674%7Cgb%7CEFC45319%2E1%7C.for.65466-67930.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.65466-67930.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.65466-67930.gi%7C284091674%7Cgb%7CEFC45319%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091345%7Cgb%7CEFC44992%2E1%7C.for.67823-69659.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.67823-69659.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.67823-69659.gi%7C284091345%7Cgb%7CEFC44992%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093228%7Cgb%7CEFC46867%2E1%7C.for.67832-69371.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.67832-69371.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.67832-69371.gi%7C284093228%7Cgb%7CEFC46867%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090440%7Cgb%7CEFC44092%2E1%7C.for.81166-83419.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.81166-83419.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.81166-83419.gi%7C284090440%7Cgb%7CEFC44092%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095446%7Cgb%7CEFC49077%2E1%7C.for.81166-83413.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.81166-83413.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.81166-83413.gi%7C284095446%7Cgb%7CEFC49077%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095286%7Cgb%7CEFC48917%2E1%7C.for.81169-83440.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.81169-83440.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.81169-83440.gi%7C284095286%7Cgb%7CEFC48917%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.86027-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89034.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.for.86030-89022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89022.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89022.gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.for.86030-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.for.86033-89028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86033-89028.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86033-89028.gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.for.86027-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89034.gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.for.85979-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.85979-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.85979-89034.gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090673%7Cgb%7CEFC44323%2E1%7C.for.86069-88737.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86069-88737.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86069-88737.gi%7C284090673%7Cgb%7CEFC44323%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094669%7Cgb%7CEFC48302%2E1%7C.for.86030-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.gi%7C284094669%7Cgb%7CEFC48302%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.for.86036-89439.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89439.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89439.gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.for.86012-89022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86012-89022.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86012-89022.gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.for.86030-88998.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-88998.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-88998.gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.for.86027-89037.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89037.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89037.gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.for.86030-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090138%7Cgb%7CEFC43791%2E1%7C.for.86015-89466.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86015-89466.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86015-89466.gi%7C284090138%7Cgb%7CEFC43791%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.for.86027-89064.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89064.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89064.gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.for.86027-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89034.gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.for.86042-89022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86042-89022.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86042-89022.gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.for.86036-89028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89028.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89028.gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093864%7Cgb%7CEFC47500%2E1%7C.for.86030-89424.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89424.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89424.gi%7C284093864%7Cgb%7CEFC47500%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.for.86030-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091293%7Cgb%7CEFC44940%2E1%7C.for.86021-89028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86021-89028.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86021-89028.gi%7C284091293%7Cgb%7CEFC44940%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097003%7Cgb%7CEFC50630%2E1%7C.for.86036-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89034.gi%7C284097003%7Cgb%7CEFC50630%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.for.85994-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.85994-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.85994-89034.gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.for.86030-89037.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89037.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89037.gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090146%7Cgb%7CEFC43799%2E1%7C.for.86024-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86024-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86024-89034.gi%7C284090146%7Cgb%7CEFC43799%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088717%7Cgb%7CEFC42379%2E1%7C.for.86030-89028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89028.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89028.gi%7C284088717%7Cgb%7CEFC42379%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.for.85871-89097.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.85871-89097.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.85871-89097.gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.for.86021-89061.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86021-89061.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86021-89061.gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.for.86015-89097.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86015-89097.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86015-89097.gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.for.86033-89082.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86033-89082.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86033-89082.gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.for.86024-89061.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86024-89061.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86024-89061.gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.for.86024-89052.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86024-89052.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86024-89052.gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084506%7Cgb%7CEFC38198%2E1%7C.for.86036-89049.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89049.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89049.gi%7C284084506%7Cgb%7CEFC38198%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096530%7Cgb%7CEFC50158%2E1%7C.for.86051-89022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86051-89022.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86051-89022.gi%7C284096530%7Cgb%7CEFC50158%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.for.86033-89043.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86033-89043.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86033-89043.gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.for.86225-88791.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86225-88791.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86225-88791.gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086531%7Cgb%7CEFC40207%2E1%7C.for.86030-89439.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89439.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89439.gi%7C284086531%7Cgb%7CEFC40207%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090243%7Cgb%7CEFC43896%2E1%7C.for.86030-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.gi%7C284090243%7Cgb%7CEFC43896%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.for.86030-89487.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89487.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89487.gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.for.86036-89022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89022.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89022.gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.for.86063-89115.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86063-89115.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86063-89115.gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.for.86063-89037.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86063-89037.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86063-89037.gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091599%7Cgb%7CEFC45245%2E1%7C.for.86069-89040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86069-89040.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86069-89040.gi%7C284091599%7Cgb%7CEFC45245%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085299%7Cgb%7CEFC38984%2E1%7C.for.86027-89025.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89025.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89025.gi%7C284085299%7Cgb%7CEFC38984%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084169%7Cgb%7CEFC37864%2E1%7C.for.92442-94214.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.92442-94214.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.92442-94214.gi%7C284084169%7Cgb%7CEFC37864%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093150%7Cgb%7CEFC46789%2E1%7C.for.96856-97871.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.96856-97871.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.96856-97871.gi%7C284093150%7Cgb%7CEFC46789%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086033%7Cgb%7CEFC39712%2E1%7C.for.97180-99460.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.97180-99460.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.97180-99460.gi%7C284086033%7Cgb%7CEFC39712%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097005%7Cgb%7CEFC50632%2E1%7C.for.99012-100303.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.99012-100303.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.99012-100303.gi%7C284097005%7Cgb%7CEFC50632%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094875%7Cgb%7CEFC48508%2E1%7C.for.100822-102855.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.100822-102855.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.100822-102855.gi%7C284094875%7Cgb%7CEFC48508%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090837%7Cgb%7CEFC44487%2E1%7C.for.101080-102267.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.101080-102267.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.101080-102267.gi%7C284090837%7Cgb%7CEFC44487%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087994%7Cgb%7CEFC41660%2E1%7C.for.106048-107651.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106048-107651.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106048-107651.gi%7C284087994%7Cgb%7CEFC41660%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:16 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:16 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:16 now processing 0 total clusters:16 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:13 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 ...processing 0 of 25 ...processing 1 of 25 ...processing 2 of 25 ...processing 3 of 25 ...processing 4 of 25 ...processing 5 of 25 ...processing 6 of 25 ...processing 7 of 25 ...processing 8 of 25 ...processing 9 of 25 ...processing 10 of 25 ...processing 11 of 25 ...processing 12 of 25 ...processing 13 of 25 ...processing 14 of 25 ...processing 15 of 25 ...processing 16 of 25 ...processing 17 of 25 ...processing 18 of 25 ...processing 19 of 25 ...trimming the rest total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:21 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:21 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 20 ...processing 1 of 20 ...processing 2 of 20 ...processing 3 of 20 ...processing 4 of 20 ...processing 5 of 20 ...processing 6 of 20 ...processing 7 of 20 ...processing 8 of 20 ...processing 9 of 20 ...processing 10 of 20 ...processing 11 of 20 ...processing 12 of 20 ...processing 13 of 20 ...processing 14 of 20 ...processing 15 of 20 ...processing 16 of 20 ...processing 17 of 20 ...processing 18 of 20 ...processing 19 of 20 ...trimming the rest ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:14 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.237-1449.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.237-1449.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.237-1449.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.3490-4150.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.3490-4150.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.3490-4150.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.12187-13518.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.12187-13518.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.12187-13518.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.30498-32914.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.30498-32914.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.30498-32914.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.40815-43764.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.40815-43764.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.40815-43764.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.45719-46717.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.45719-46717.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.45719-46717.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.54239-57877.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.54239-57877.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.54239-57877.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.65665-67730.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.65665-67730.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.65665-67730.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.69301-72129.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.69301-72129.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.69301-72129.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.86214-88915.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.86214-88915.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.86214-88915.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.92599-94014.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.92599-94014.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.92599-94014.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.96839-97671.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.96839-97671.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.96839-97671.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.100939-102655.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.100939-102655.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.100939-102655.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.109353-111698.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.109353-111698.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.109353-111698.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.434-1250.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.434-1250.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.434-1250.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.28492-29772.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.28492-29772.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.28492-29772.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.34216-34808.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.34216-34808.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.34216-34808.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.50087-51178.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.50087-51178.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.50087-51178.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.57824-59575.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.57824-59575.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.57824-59575.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.61045-61947.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.61045-61947.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.61045-61947.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.72004-73098.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.72004-73098.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.72004-73098.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.81365-83280.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.81365-83280.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.81365-83280.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.89359-90195.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.89359-90195.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.89359-90195.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.97379-100462.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.97379-100462.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.97379-100462.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.104109-105298.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.104109-105298.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.104109-105298.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.106175-107451.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.106175-107451.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.106175-107451.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C8 Length: 71281 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:3 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:5 current j:0 j_size:5 current j:1 j_size:5 current j:2 j_size:5 current j:3 j_size:5 current j:4 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C8.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C8.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11569%7Crna-binding.for.1136-2408.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.1136-2408.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.1136-2408.Ar_EST_120301b_c11569%7Crna-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1047%7Cdual.for.5428-7005.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.5428-7005.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.5428-7005.120301b_Contig1047%7Cdual.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9703%7Cwd40.for.7390-8926.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.7390-8926.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.7390-8926.Ar_EST_120301b_c9703%7Cwd40.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig523%7Cmetaxin.for.9216-10932.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.9216-10932.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.9216-10932.120301b_Contig523%7Cmetaxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14860%7Cmetaxin-3.for.9823-11135.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.9823-11135.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.9823-11135.Ar_EST_120301b_c14860%7Cmetaxin-3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17966%7Cmitogen-activated.for.10560-12367.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.10560-12367.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.10560-12367.Ar_EST_120301b_c17966%7Cmitogen-activated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11899%7Cmix.for.12967-14078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.12967-14078.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.12967-14078.Ar_EST_120301b_c11899%7Cmix.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14282%7C---NA---.for.13676-14878.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.13676-14878.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.13676-14878.Ar_EST_120301b_c14282%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3639%7C0298671.for.14112-16868.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.14112-16868.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.14112-16868.Ar_EST_120301b_c3639%7C0298671.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8179%7Cnormalized.for.16113-17345.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.16113-17345.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.16113-17345.Ar_EST_120301b_rep_c8179%7Cnormalized.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2878%7Cacyloxyacyl.for.18765-20718.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.18765-20718.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.18765-20718.Ar_EST_120301b_c2878%7Cacyloxyacyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig944%7Cmitochondrial.for.20293-21752.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.20293-21752.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.20293-21752.120301b_Contig944%7Cmitochondrial.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14537%7C---NA---.for.25006-25909.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.25006-25909.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.25006-25909.Ar_EST_120301b_c14537%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig939%7Cacid.for.24454-25816.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.24454-25816.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.24454-25816.120301b_Contig939%7Cacid.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c944%7Cest_lsaa_evv_1238232.for.26963-28583.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.26963-28583.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.26963-28583.Ar_EST_120301b_c944%7Cest_lsaa_evv_1238232.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14759%7C---NA---.for.29307-30510.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.29307-30510.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.29307-30510.Ar_EST_120301b_c14759%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12291%7Cest03036.for.28979-30318.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.28979-30318.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.28979-30318.Ar_EST_120301b_c12291%7Cest03036.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16855%7Cankyrin.for.32668-33901.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.32668-33901.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.32668-33901.Ar_EST_120301b_c16855%7Cankyrin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2487%7Ccawz.for.36801-38241.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.36801-38241.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.36801-38241.Ar_EST_120301b_c2487%7Ccawz.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9594%7Cy1842_erwct.for.39726-41093.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.39726-41093.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.39726-41093.Ar_EST_120301b_c9594%7Cy1842_erwct.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4074%7Cpredicted.for.44695-46110.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.44695-46110.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.44695-46110.Ar_EST_120301b_rep_c4074%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12747%7C---NA---.for.44884-46065.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.44884-46065.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.44884-46065.Ar_EST_120301b_rep_c12747%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17783%7Cadenylate.for.45407-46440.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.45407-46440.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.45407-46440.Ar_EST_120301b_rep_c17783%7Cadenylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5659%7Cadenylate.for.45408-46915.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.45408-46915.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.45408-46915.Ar_EST_120301b_rep_c5659%7Cadenylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4208%7Cadenylate.for.45358-46915.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.45358-46915.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.45358-46915.Ar_EST_120301b_rep_c4208%7Cadenylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c897%7C3.for.48834-50442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.48834-50442.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.48834-50442.Ar_EST_120301b_c897%7C3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c535%7Cubiquitin-specific.for.52735-53854.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.52735-53854.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.52735-53854.Ar_EST_120301b_c535%7Cubiquitin-specific.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c876%7Cprotein.for.51138-54171.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.51138-54171.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.51138-54171.Ar_EST_120301b_c876%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19537%7Cubiquitin-specific.for.51261-52540.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.51261-52540.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.51261-52540.Ar_EST_120301b_rep_c19537%7Cubiquitin-specific.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6146%7Cprotein.for.54235-55373.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54235-55373.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54235-55373.Ar_EST_120301b_rep_c6146%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig907%7Cubiquitin-conjugating.for.54109-55392.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54109-55392.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54109-55392.120301b_Contig907%7Cubiquitin-conjugating.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1366%7Cphospholipid-transporting.for.55948-58049.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55948-58049.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55948-58049.120301b_Contig1366%7Cphospholipid-transporting.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c820%7Caminophospholipid.for.57236-58683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.57236-58683.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.57236-58683.Ar_EST_120301b_c820%7Caminophospholipid.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18642%7Cprotein.for.55305-57062.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55305-57062.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55305-57062.Ar_EST_120301b_c18642%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1892%7Cprobable.for.54733-56157.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54733-56157.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54733-56157.Ar_EST_120301b_c1892%7Cprobable.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10313%7Cphospholipid-transporting.for.58014-59073.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.58014-59073.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.58014-59073.Ar_EST_120301b_c10313%7Cphospholipid-transporting.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15133%7Cpredicted.for.60971-62209.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.60971-62209.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.60971-62209.Ar_EST_120301b_c15133%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3416%7Cprotein.for.65768-67717.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.65768-67717.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.65768-67717.Ar_EST_120301b_c3416%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11057%7Cupf0061.for.66140-67643.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.66140-67643.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.66140-67643.Ar_EST_120301b_c11057%7Cupf0061.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20360%7Cacid.for.68216-69457.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68216-69457.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68216-69457.Ar_EST_120301b_rep_c20360%7Cacid.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12404%7Cacid.for.68179-69815.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68179-69815.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68179-69815.Ar_EST_120301b_rep_c12404%7Cacid.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig348%7Cacid.for.68030-69951.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68030-69951.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68030-69951.120301b_Contig348%7Cacid.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6228%7Ceri1.for.69349-70801.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.69349-70801.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.69349-70801.Ar_EST_120301b_rep_c6228%7Ceri1.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:35 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:34 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:34 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:40 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:38 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:27 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:33 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:29 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:33 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085834%7Cgb%7CEFC39515%2E1%7C.for.575-2502.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.575-2502.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.575-2502.gi%7C284085834%7Cgb%7CEFC39515%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C18033042%7Cgb%7CAAL56965%2E1%7CAF322049_1.for.3535-5826.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3535-5826.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3535-5826.gi%7C18033042%7Cgb%7CAAL56965%2E1%7CAF322049_1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094205%7Cgb%7CEFC47840%2E1%7C.for.3427-5844.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3427-5844.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3427-5844.gi%7C284094205%7Cgb%7CEFC47840%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083921%7Cgb%7CEFC37619%2E1%7C.for.3427-5808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3427-5808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3427-5808.gi%7C284083921%7Cgb%7CEFC37619%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094210%7Cgb%7CEFC47845%2E1%7C.for.3439-5862.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3439-5862.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3439-5862.gi%7C284094210%7Cgb%7CEFC47845%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089748%7Cgb%7CEFC43404%2E1%7C.for.3415-5961.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3415-5961.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3415-5961.gi%7C284089748%7Cgb%7CEFC43404%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095071%7Cgb%7CEFC48703%2E1%7C.for.6332-7440.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.6332-7440.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.6332-7440.gi%7C284095071%7Cgb%7CEFC48703%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083404%7Cgb%7CEFC37108%2E1%7C.for.7147-8987.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.7147-8987.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.7147-8987.gi%7C284083404%7Cgb%7CEFC37108%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089145%7Cgb%7CEFC42804%2E1%7C.for.10634-12660.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.10634-12660.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.10634-12660.gi%7C284089145%7Cgb%7CEFC42804%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095262%7Cgb%7CEFC48893%2E1%7C.for.11987-13041.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11987-13041.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11987-13041.gi%7C284095262%7Cgb%7CEFC48893%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091315%7Cgb%7CEFC44962%2E1%7C.for.11954-13208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11954-13208.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11954-13208.gi%7C284091315%7Cgb%7CEFC44962%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090821%7Cgb%7CEFC44471%2E1%7C.for.11948-13199.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11948-13199.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11948-13199.gi%7C284090821%7Cgb%7CEFC44471%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090721%7Cgb%7CEFC44371%2E1%7C.for.12086-13205.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.12086-13205.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.12086-13205.gi%7C284090721%7Cgb%7CEFC44371%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094778%7Cgb%7CEFC48411%2E1%7C.for.12038-13029.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.12038-13029.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.12038-13029.gi%7C284094778%7Cgb%7CEFC48411%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089020%7Cgb%7CEFC42680%2E1%7C.for.11930-13208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13208.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13208.gi%7C284089020%7Cgb%7CEFC42680%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094435%7Cgb%7CEFC48069%2E1%7C.for.11930-13041.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13041.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13041.gi%7C284094435%7Cgb%7CEFC48069%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084285%7Cgb%7CEFC37979%2E1%7C.for.11930-13208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13208.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13208.gi%7C284084285%7Cgb%7CEFC37979%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085637%7Cgb%7CEFC39319%2E1%7C.for.11930-13041.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13041.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13041.gi%7C284085637%7Cgb%7CEFC39319%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090223%7Cgb%7CEFC43876%2E1%7C.for.11948-13044.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11948-13044.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11948-13044.gi%7C284090223%7Cgb%7CEFC43876%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089016%7Cgb%7CEFC42676%2E1%7C.for.11951-13041.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11951-13041.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11951-13041.gi%7C284089016%7Cgb%7CEFC42676%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087164%7Cgb%7CEFC40836%2E1%7C.for.11939-13017.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11939-13017.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11939-13017.gi%7C284087164%7Cgb%7CEFC40836%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093747%7Cgb%7CEFC47384%2E1%7C.for.11930-13107.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13107.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13107.gi%7C284093747%7Cgb%7CEFC47384%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096426%7Cgb%7CEFC50054%2E1%7C.for.12095-13199.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.12095-13199.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.12095-13199.gi%7C284096426%7Cgb%7CEFC50054%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089587%7Cgb%7CEFC43244%2E1%7C.for.18781-20717.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.18781-20717.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.18781-20717.gi%7C284089587%7Cgb%7CEFC43244%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085037%7Cgb%7CEFC38724%2E1%7C.for.19961-21784.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.19961-21784.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.19961-21784.gi%7C284085037%7Cgb%7CEFC38724%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083566%7Cgb%7CEFC37268%2E1%7C.for.22837-24732.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.22837-24732.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.22837-24732.gi%7C284083566%7Cgb%7CEFC37268%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089709%7Cgb%7CEFC43365%2E1%7C.for.24184-25881.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.24184-25881.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.24184-25881.gi%7C284089709%7Cgb%7CEFC43365%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093351%7Cgb%7CEFC46989%2E1%7C.for.34683-36673.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.34683-36673.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.34683-36673.gi%7C284093351%7Cgb%7CEFC46989%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084118%7Cgb%7CEFC37814%2E1%7C.for.44305-45479.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.44305-45479.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.44305-45479.gi%7C284084118%7Cgb%7CEFC37814%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085702%7Cgb%7CEFC39384%2E1%7C.for.45412-46883.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.45412-46883.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.45412-46883.gi%7C284085702%7Cgb%7CEFC39384%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085662%7Cgb%7CEFC39344%2E1%7C.for.46121-48984.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.46121-48984.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.46121-48984.gi%7C284085662%7Cgb%7CEFC39344%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090469%7Cgb%7CEFC44121%2E1%7C.for.51128-54445.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.51128-54445.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.51128-54445.gi%7C284090469%7Cgb%7CEFC44121%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091315%7Cgb%7CEFC44962%2E1%7C.for.54190-55421.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54190-55421.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54190-55421.gi%7C284091315%7Cgb%7CEFC44962%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090821%7Cgb%7CEFC44471%2E1%7C.for.54184-55409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54184-55409.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54184-55409.gi%7C284090821%7Cgb%7CEFC44471%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089020%7Cgb%7CEFC42680%2E1%7C.for.54163-55403.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54163-55403.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54163-55403.gi%7C284089020%7Cgb%7CEFC42680%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094435%7Cgb%7CEFC48069%2E1%7C.for.54166-55394.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54166-55394.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54166-55394.gi%7C284094435%7Cgb%7CEFC48069%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084285%7Cgb%7CEFC37979%2E1%7C.for.54166-55403.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54166-55403.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54166-55403.gi%7C284084285%7Cgb%7CEFC37979%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085637%7Cgb%7CEFC39319%2E1%7C.for.54166-55391.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54166-55391.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54166-55391.gi%7C284085637%7Cgb%7CEFC39319%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090223%7Cgb%7CEFC43876%2E1%7C.for.54184-55418.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54184-55418.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54184-55418.gi%7C284090223%7Cgb%7CEFC43876%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093747%7Cgb%7CEFC47384%2E1%7C.for.54166-55400.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54166-55400.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54166-55400.gi%7C284093747%7Cgb%7CEFC47384%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096426%7Cgb%7CEFC50054%2E1%7C.for.54334-55418.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54334-55418.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54334-55418.gi%7C284096426%7Cgb%7CEFC50054%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089788%7Cgb%7CEFC43443%2E1%7C.for.55055-59474.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55055-59474.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55055-59474.gi%7C284089788%7Cgb%7CEFC43443%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092821%7Cgb%7CEFC46461%2E1%7C.for.54815-59459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54815-59459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54815-59459.gi%7C284092821%7Cgb%7CEFC46461%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083022%7Cgb%7CEFC36730%2E1%7C.for.55181-59459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55181-59459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55181-59459.gi%7C284083022%7Cgb%7CEFC36730%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093552%7Cgb%7CEFC47189%2E1%7C.for.55133-59459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55133-59459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55133-59459.gi%7C284093552%7Cgb%7CEFC47189%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085695%7Cgb%7CEFC39377%2E1%7C.for.54833-59474.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54833-59474.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54833-59474.gi%7C284085695%7Cgb%7CEFC39377%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082133%7Cgb%7CEFC35904%2E1%7C.for.55181-56826.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55181-56826.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55181-56826.gi%7C284082133%7Cgb%7CEFC35904%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085871%7Cgb%7CEFC39552%2E1%7C.for.68157-69939.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68157-69939.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68157-69939.gi%7C284085871%7Cgb%7CEFC39552%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084771%7Cgb%7CEFC38460%2E1%7C.for.68157-69939.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68157-69939.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68157-69939.gi%7C284084771%7Cgb%7CEFC38460%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088755%7Cgb%7CEFC42417%2E1%7C.for.68157-69939.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68157-69939.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68157-69939.gi%7C284088755%7Cgb%7CEFC42417%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089891%7Cgb%7CEFC43546%2E1%7C.for.68157-69939.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68157-69939.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68157-69939.gi%7C284089891%7Cgb%7CEFC43546%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096470%7Cgb%7CEFC50098%2E1%7C.for.69373-70748.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.69373-70748.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.69373-70748.gi%7C284096470%7Cgb%7CEFC50098%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092674%7Cgb%7CEFC46315%2E1%7C.for.69373-70766.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.69373-70766.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.69373-70766.gi%7C284092674%7Cgb%7CEFC46315%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:17 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:17 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:10 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:10 now processing 0 total clusters:10 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:10 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:13 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:13 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:13 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.3614-7246.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.3614-7246.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.3614-7246.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.9990-12460.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.9990-12460.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.9990-12460.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.13126-13878.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.13126-13878.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.13126-13878.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.16310-17234.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.16310-17234.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.16310-17234.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.18964-20518.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.18964-20518.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.18964-20518.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.24383-25709.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.24383-25709.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.24383-25709.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.29178-30310.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.29178-30310.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.29178-30310.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.32867-33701.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.32867-33701.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.32867-33701.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.34864-36473.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.34864-36473.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.34864-36473.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.39925-40893.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.39925-40893.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.39925-40893.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.44894-46715.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.44894-46715.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.44894-46715.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.61156-62009.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.61156-62009.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.61156-62009.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.68225-70601.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.68225-70601.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.68225-70601.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.774-2302.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.774-2302.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.774-2302.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.7589-8726.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.7589-8726.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.7589-8726.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.12129-13008.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.12129-13008.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.12129-13008.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.20160-21584.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.20160-21584.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.20160-21584.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.27162-28383.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.27162-28383.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.27162-28383.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.37000-38041.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.37000-38041.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.37000-38041.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.44504-45279.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.44504-45279.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.44504-45279.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.46320-48784.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.46320-48784.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.46320-48784.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.49033-50262.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.49033-50262.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.49033-50262.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.51327-54245.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.51327-54245.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.51327-54245.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.54308-59274.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.54308-59274.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.54308-59274.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.65959-67517.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.65959-67517.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.65959-67517.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C9 Length: 143137 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:54 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:66 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:41 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:64 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:58 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:64 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:49 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:63 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:57 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:57 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:6 current j:0 j_size:6 current j:1 j_size:6 current j:2 j_size:6 current j:3 j_size:6 current j:4 j_size:6 current j:5 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C9.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C9.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:10 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:10 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:4 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2247%7Cm7g%285.for.2328-3644.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.2328-3644.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.2328-3644.Ar_EST_120301b_c2247%7Cm7g%285.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1181%7Cglutaminase.for.3456-5008.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.3456-5008.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.3456-5008.Ar_EST_120301b_c1181%7Cglutaminase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17708%7Ccalcium-dependent.for.4667-5932.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.4667-5932.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.4667-5932.Ar_EST_120301b_c17708%7Ccalcium-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18654%7Chistone.for.7274-8455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7274-8455.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7274-8455.Ar_EST_120301b_rep_c18654%7Chistone.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20047%7Chistone.for.7291-8488.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7291-8488.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7291-8488.Ar_EST_120301b_rep_c20047%7Chistone.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15057%7Chypothetical.for.8269-9793.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.8269-9793.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.8269-9793.Ar_EST_120301b_c15057%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11519%7Ccarboxylesterase.for.15701-17156.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.15701-17156.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.15701-17156.Ar_EST_120301b_c11519%7Ccarboxylesterase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12514%7Cic0aaa79dd02rm1.for.20388-21618.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.20388-21618.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.20388-21618.Ar_EST_120301b_c12514%7Cic0aaa79dd02rm1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c122%7Cprotein.for.23727-25878.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.23727-25878.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.23727-25878.Ar_EST_120301b_c122%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig707%7Cstructure.for.23281-25022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.23281-25022.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.23281-25022.120301b_Contig707%7Cstructure.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig744%7Cvesicle.for.27994-29515.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.27994-29515.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.27994-29515.120301b_Contig744%7Cvesicle.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1993%7Ccof-like.for.30494-31813.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.30494-31813.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.30494-31813.Ar_EST_120301b_c1993%7Ccof-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11129%7Csl_.for.34342-35297.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.34342-35297.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.34342-35297.Ar_EST_120301b_rep_c11129%7Csl_.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17985%7Cheat.for.35244-36515.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35244-36515.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35244-36515.Ar_EST_120301b_c17985%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18115%7C---NA---.for.38253-39152.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.38253-39152.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.38253-39152.Ar_EST_120301b_c18115%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10295%7Cgh_hypt_01-01-10r_h06_.for.43281-44143.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.43281-44143.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.43281-44143.Ar_EST_120301b_c10295%7Cgh_hypt_01-01-10r_h06_.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5908%7Cest154.for.44564-45707.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44564-45707.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44564-45707.Ar_EST_120301b_rep_c5908%7Cest154.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17536%7Cace00011780.for.44608-45707.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44608-45707.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44608-45707.Ar_EST_120301b_rep_c17536%7Cace00011780.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19922%7Csbay-f90.for.45128-46080.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.45128-46080.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.45128-46080.Ar_EST_120301b_rep_c19922%7Csbay-f90.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18817%7Ccdn38p0008e01.for.44704-45722.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44704-45722.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44704-45722.Ar_EST_120301b_rep_c18817%7Ccdn38p0008e01.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13131%7Clucilia.for.44577-45900.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44577-45900.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44577-45900.Ar_EST_120301b_rep_c13131%7Clucilia.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7193%7Csoybean.for.44565-45685.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44565-45685.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44565-45685.Ar_EST_120301b_rep_c7193%7Csoybean.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig645%7Ccytochrome.for.44685-46267.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44685-46267.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44685-46267.120301b_Contig645%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7085%7Cfq079731.for.44762-45838.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44762-45838.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44762-45838.Ar_EST_120301b_rep_c7085%7Cfq079731.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig637%7Cest154.for.44568-45722.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44568-45722.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44568-45722.120301b_Contig637%7Cest154.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7059%7Cfp515931.for.44757-46264.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44757-46264.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44757-46264.Ar_EST_120301b_rep_c7059%7Cfp515931.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig630%7Chypothetical.for.44687-45807.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44687-45807.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44687-45807.120301b_Contig630%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17959%7Cms1-0010t-d100-c05-.for.45973-46909.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.45973-46909.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.45973-46909.Ar_EST_120301b_c17959%7Cms1-0010t-d100-c05-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13118%7C---NA---.for.46737-48076.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.46737-48076.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.46737-48076.Ar_EST_120301b_c13118%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19997%7Cendonuclease.for.49277-50751.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.49277-50751.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.49277-50751.Ar_EST_120301b_c19997%7Cendonuclease.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7711%7Cendonuclease.for.49011-50427.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.49011-50427.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.49011-50427.Ar_EST_120301b_c7711%7Cendonuclease.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1977%7Cendonuclease.for.49186-50532.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.49186-50532.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.49186-50532.Ar_EST_120301b_c1977%7Cendonuclease.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18660%7Cendonuclease.for.49180-50761.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.49180-50761.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.49180-50761.Ar_EST_120301b_c18660%7Cendonuclease.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14465%7Cpredicted.for.61002-62245.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.61002-62245.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.61002-62245.Ar_EST_120301b_c14465%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20376%7Cprotein.for.67849-70497.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.67849-70497.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.67849-70497.Ar_EST_120301b_c20376%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15791%7Cmoobi53tf.for.71085-72566.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.71085-72566.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.71085-72566.Ar_EST_120301b_c15791%7Cmoobi53tf.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12677%7Cmulti-sensor.for.76311-78090.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.76311-78090.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.76311-78090.Ar_EST_120301b_c12677%7Cmulti-sensor.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3335%7Caerobic.for.77895-79314.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.77895-79314.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.77895-79314.Ar_EST_120301b_c3335%7Caerobic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9381%7Chistidine.for.78583-79990.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.78583-79990.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.78583-79990.Ar_EST_120301b_c9381%7Chistidine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8780%7Cccgo.for.83976-85494.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.83976-85494.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.83976-85494.Ar_EST_120301b_c8780%7Cccgo.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10994%7Cct751907.for.87695-88589.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.87695-88589.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.87695-88589.Ar_EST_120301b_c10994%7Cct751907.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18336%7C---NA---.for.95445-96809.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.95445-96809.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.95445-96809.Ar_EST_120301b_c18336%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4188%7Chistone.for.101375-103374.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.101375-103374.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.101375-103374.Ar_EST_120301b_rep_c4188%7Chistone.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5666%7Cc-terminal.for.101564-103377.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.101564-103377.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.101564-103377.Ar_EST_120301b_rep_c5666%7Cc-terminal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19411%7C60s.for.101822-102850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.101822-102850.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.101822-102850.Ar_EST_120301b_rep_c19411%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15541%7Ctyrosyl-trna.for.104055-105009.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.104055-105009.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.104055-105009.Ar_EST_120301b_rep_c15541%7Ctyrosyl-trna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2608%7Ccarboxypeptidase.for.102704-105003.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.102704-105003.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.102704-105003.Ar_EST_120301b_c2608%7Ccarboxypeptidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19821%7Cprotein.for.104883-106741.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.104883-106741.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.104883-106741.Ar_EST_120301b_c19821%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8714%7Cfs351607.for.107515-109235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.107515-109235.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.107515-109235.Ar_EST_120301b_c8714%7Cfs351607.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1151%7Cprotein.for.109075-110229.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.109075-110229.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.109075-110229.Ar_EST_120301b_c1151%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8321%7Chypothetical.for.113081-114435.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.113081-114435.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.113081-114435.Ar_EST_120301b_c8321%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18042%7Cmembrane-associated.for.114907-116209.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.114907-116209.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.114907-116209.Ar_EST_120301b_c18042%7Cmembrane-associated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9130%7Chypothetical.for.122599-123971.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.122599-123971.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.122599-123971.Ar_EST_120301b_rep_c9130%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3158%7Catp-dependent.for.130435-132491.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.130435-132491.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.130435-132491.Ar_EST_120301b_c3158%7Catp-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16159%7Cpentapeptide.for.127438-128733.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.127438-128733.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.127438-128733.Ar_EST_120301b_c16159%7Cpentapeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17324%7Cdeah-box.for.129804-131312.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.129804-131312.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.129804-131312.Ar_EST_120301b_c17324%7Cdeah-box.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13668%7Cpentapeptide.for.126833-134289.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.126833-134289.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.126833-134289.Ar_EST_120301b_c13668%7Cpentapeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18239%7Cprotein.for.134008-135254.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.134008-135254.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.134008-135254.Ar_EST_120301b_c18239%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14682%7Cfy377012.for.134325-135441.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.134325-135441.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.134325-135441.Ar_EST_120301b_c14682%7Cfy377012.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1054%7Creverse.for.137097-139562.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.137097-139562.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.137097-139562.120301b_Contig1054%7Creverse.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig87%7Creverse.for.137443-141840.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.137443-141840.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.137443-141840.120301b_Contig87%7Creverse.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1127%7Csite-specific.for.138478-140457.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.138478-140457.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.138478-140457.Ar_EST_120301b_c1127%7Csite-specific.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11365%7C---NA---.for.140516-141818.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.140516-141818.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.140516-141818.Ar_EST_120301b_c11365%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1151%7Cprotein.for.139510-140849.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.139510-140849.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.139510-140849.Ar_EST_120301b_c1151%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15418%7C0173437.for.141397-142458.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.141397-142458.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.141397-142458.Ar_EST_120301b_c15418%7C0173437.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1468%7Cfy881664.for.141888-143137.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.141888-143137.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.141888-143137.Ar_EST_120301b_c1468%7Cfy881664.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17518%7C1098310.for.141666-143078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.141666-143078.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.141666-143078.Ar_EST_120301b_c17518%7C1098310.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:35 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:35 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:34 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:29 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:40 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:54 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:41 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:53 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:55 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:34 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:30 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096617%7Cgb%7CEFC50245%2E1%7C.for.3766-5632.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.3766-5632.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.3766-5632.gi%7C284096617%7Cgb%7CEFC50245%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085117%7Cgb%7CEFC38803%2E1%7C.for.7281-8482.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7281-8482.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7281-8482.gi%7C284085117%7Cgb%7CEFC38803%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094028%7Cgb%7CEFC47663%2E1%7C.for.7281-8437.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7281-8437.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7281-8437.gi%7C284094028%7Cgb%7CEFC47663%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096335%7Cgb%7CEFC49963%2E1%7C.for.7281-8476.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7281-8476.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7281-8476.gi%7C284096335%7Cgb%7CEFC49963%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083146%7Cgb%7CEFC36852%2E1%7C.for.7272-8479.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7272-8479.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7272-8479.gi%7C284083146%7Cgb%7CEFC36852%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096073%7Cgb%7CEFC49702%2E1%7C.for.7272-8479.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7272-8479.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7272-8479.gi%7C284096073%7Cgb%7CEFC49702%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083449%7Cgb%7CEFC37152%2E1%7C.for.7275-8479.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7275-8479.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7275-8479.gi%7C284083449%7Cgb%7CEFC37152%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090015%7Cgb%7CEFC43669%2E1%7C.for.7518-8467.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7518-8467.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7518-8467.gi%7C284090015%7Cgb%7CEFC43669%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088656%7Cgb%7CEFC42318%2E1%7C.for.7272-8479.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7272-8479.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7272-8479.gi%7C284088656%7Cgb%7CEFC42318%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082495%7Cgb%7CEFC36212%2E1%7C.for.16753-17813.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.16753-17813.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.16753-17813.gi%7C284082495%7Cgb%7CEFC36212%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085727%7Cgb%7CEFC39409%2E1%7C.for.23366-25512.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.23366-25512.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.23366-25512.gi%7C284085727%7Cgb%7CEFC39409%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081155%7Cgb%7CEFC35313%2E1%7C.for.31897-33191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33191.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33191.gi%7C284081155%7Cgb%7CEFC35313%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092983%7Cgb%7CEFC46623%2E1%7C.for.31897-33191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33191.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33191.gi%7C284092983%7Cgb%7CEFC46623%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096875%7Cgb%7CEFC50502%2E1%7C.for.31933-33185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31933-33185.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31933-33185.gi%7C284096875%7Cgb%7CEFC50502%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090267%7Cgb%7CEFC43920%2E1%7C.for.31891-33125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31891-33125.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31891-33125.gi%7C284090267%7Cgb%7CEFC43920%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093592%7Cgb%7CEFC47229%2E1%7C.for.31933-33155.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31933-33155.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31933-33155.gi%7C284093592%7Cgb%7CEFC47229%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089692%7Cgb%7CEFC43348%2E1%7C.for.31933-33176.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31933-33176.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31933-33176.gi%7C284089692%7Cgb%7CEFC43348%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093109%7Cgb%7CEFC46748%2E1%7C.for.31933-33137.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31933-33137.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31933-33137.gi%7C284093109%7Cgb%7CEFC46748%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088464%7Cgb%7CEFC42127%2E1%7C.for.31885-33191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31885-33191.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31885-33191.gi%7C284088464%7Cgb%7CEFC42127%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085514%7Cgb%7CEFC39197%2E1%7C.for.31897-33185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33185.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33185.gi%7C284085514%7Cgb%7CEFC39197%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094883%7Cgb%7CEFC48516%2E1%7C.for.31897-33185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33185.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33185.gi%7C284094883%7Cgb%7CEFC48516%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095464%7Cgb%7CEFC49095%2E1%7C.for.31888-33191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31888-33191.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31888-33191.gi%7C284095464%7Cgb%7CEFC49095%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086458%7Cgb%7CEFC40134%2E1%7C.for.31879-33191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31879-33191.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31879-33191.gi%7C284086458%7Cgb%7CEFC40134%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090503%7Cgb%7CEFC44154%2E1%7C.for.31897-33191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33191.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33191.gi%7C284090503%7Cgb%7CEFC44154%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087655%7Cgb%7CEFC41323%2E1%7C.for.35179-36215.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35179-36215.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35179-36215.gi%7C284087655%7Cgb%7CEFC41323%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094750%7Cgb%7CEFC48383%2E1%7C.for.35182-36185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35182-36185.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35182-36185.gi%7C284094750%7Cgb%7CEFC48383%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093665%7Cgb%7CEFC47302%2E1%7C.for.35185-36215.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35185-36215.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35185-36215.gi%7C284093665%7Cgb%7CEFC47302%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083002%7Cgb%7CEFC36710%2E1%7C.for.35167-36194.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35167-36194.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35167-36194.gi%7C284083002%7Cgb%7CEFC36710%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096189%7Cgb%7CEFC49818%2E1%7C.for.35200-36185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35200-36185.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35200-36185.gi%7C284096189%7Cgb%7CEFC49818%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097268%7Cgb%7CEFC50895%2E1%7C.for.35194-36119.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35194-36119.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35194-36119.gi%7C284097268%7Cgb%7CEFC50895%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087657%7Cgb%7CEFC41325%2E1%7C.for.35194-36185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35194-36185.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35194-36185.gi%7C284087657%7Cgb%7CEFC41325%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.53623-54797.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.53623-54797.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.53623-54797.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080808%7Cgb%7CEFC35194%2E1%7C.for.53641-54773.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.53641-54773.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.53641-54773.gi%7C284080808%7Cgb%7CEFC35194%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088718%7Cgb%7CEFC42380%2E1%7C.for.97321-99173.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.97321-99173.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.97321-99173.gi%7C284088718%7Cgb%7CEFC42380%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088128%7Cgb%7CEFC41793%2E1%7C.for.102638-105144.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.102638-105144.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.102638-105144.gi%7C284088128%7Cgb%7CEFC41793%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087793%7Cgb%7CEFC41460%2E1%7C.for.122538-123964.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.122538-123964.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.122538-123964.gi%7C284087793%7Cgb%7CEFC41460%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091622%7Cgb%7CEFC45268%2E1%7C.for.127758-128797.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.127758-128797.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.127758-128797.gi%7C284091622%7Cgb%7CEFC45268%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092450%7Cgb%7CEFC46092%2E1%7C.for.129955-132404.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.129955-132404.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.129955-132404.gi%7C284092450%7Cgb%7CEFC46092%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092967%7Cgb%7CEFC46607%2E1%7C.for.130477-132494.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.130477-132494.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.130477-132494.gi%7C284092967%7Cgb%7CEFC46607%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095326%7Cgb%7CEFC48957%2E1%7C.for.130348-132413.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.130348-132413.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.130348-132413.gi%7C284095326%7Cgb%7CEFC48957%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:10 now processing 0 total clusters:10 now processing 0 ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:10 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:10 now processing 0 total clusters:10 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:10 now processing 0 total clusters:10 now processing 0 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 12 ...processing 1 of 12 ...processing 2 of 12 ...processing 3 of 12 ...processing 4 of 12 ...processing 5 of 12 ...processing 6 of 12 ...processing 7 of 12 ...processing 8 of 12 ...processing 9 of 12 ...processing 10 of 12 ...processing 11 of 12 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:9 now processing 0 total clusters:9 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:20 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:20 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:20 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:20 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:20 now processing 0 total clusters:20 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.2527-3444.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.2527-3444.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.2527-3444.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.20587-21452.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.20587-21452.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.20587-21452.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.23565-25687.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.23565-25687.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.23565-25687.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.32078-32991.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.32078-32991.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.32078-32991.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.35393-36315.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.35393-36315.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.35393-36315.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.44759-45610.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.44759-45610.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.44759-45610.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.49353-50561.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.49353-50561.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.49353-50561.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.76510-79797.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.76510-79797.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.76510-79797.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.84168-85294.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.84168-85294.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.84168-85294.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.95633-96616.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.95633-96616.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.95633-96616.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.101574-103179.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.101574-103179.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.101574-103179.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.115045-116020.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.115045-116020.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.115045-116020.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.122667-123801.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.122667-123801.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.122667-123801.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.129957-132294.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.129957-132294.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.129957-132294.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.137252-141129.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.137252-141129.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.137252-141129.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.141596-142878.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.141596-142878.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.141596-142878.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.3655-5732.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.3655-5732.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.3655-5732.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.7392-8353.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.7392-8353.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.7392-8353.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.8468-9593.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.8468-9593.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.8468-9593.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.15900-16956.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.15900-16956.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.15900-16956.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.30678-31613.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.30678-31613.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.30678-31613.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.44776-46068.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.44776-46068.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.44776-46068.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.46936-47876.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.46936-47876.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.46936-47876.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.61201-62045.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.61201-62045.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.61201-62045.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.68048-70359.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.68048-70359.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.68048-70359.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.71228-72366.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.71228-72366.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.71228-72366.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.97520-98973.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.97520-98973.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.97520-98973.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.102837-104944.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.102837-104944.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.102837-104944.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.105082-106541.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.105082-106541.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.105082-106541.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.127632-128597.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.127632-128597.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.127632-128597.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.134207-135054.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.134207-135054.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.134207-135054.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.140715-141618.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.140715-141618.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.140715-141618.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C10 Length: 41445 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C10.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C10.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7990%7C%3Ap.for.1-1325.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.1-1325.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.1-1325.Ar_EST_120301b_c7990%7C%3Ap.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20004%7Crr3c854jq.for.1-895.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.1-895.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.1-895.Ar_EST_120301b_c20004%7Crr3c854jq.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15326%7Cccts.for.3101-4431.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.3101-4431.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.3101-4431.Ar_EST_120301b_c15326%7Cccts.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10775%7Csjs.for.4244-5630.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.4244-5630.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.4244-5630.Ar_EST_120301b_c10775%7Csjs.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18609%7Ctim-barrel.for.4880-6450.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.4880-6450.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.4880-6450.Ar_EST_120301b_c18609%7Ctim-barrel.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14489%7Cround.for.8011-9359.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.8011-9359.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.8011-9359.Ar_EST_120301b_c14489%7Cround.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5030%7Cthaumatin-like.for.13925-15433.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.13925-15433.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.13925-15433.Ar_EST_120301b_rep_c5030%7Cthaumatin-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11177%7C---NA---.for.14867-16020.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.14867-16020.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.14867-16020.Ar_EST_120301b_c11177%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3649%7Cthaumatin-like.for.14119-16160.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.14119-16160.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.14119-16160.Ar_EST_120301b_c3649%7Cthaumatin-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5431%7Cthaumatin-like.for.13925-15654.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.13925-15654.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.13925-15654.Ar_EST_120301b_rep_c5431%7Cthaumatin-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17044%7Cdiphthamide.for.16149-17668.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.16149-17668.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.16149-17668.Ar_EST_120301b_c17044%7Cdiphthamide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c438%7Cpredicted.for.18557-20020.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.18557-20020.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.18557-20020.Ar_EST_120301b_c438%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig292%7Cpredicted.for.20140-22013.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.20140-22013.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.20140-22013.120301b_Contig292%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15990%7Cpredicted.for.20407-21603.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.20407-21603.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.20407-21603.Ar_EST_120301b_c15990%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig108%7Cprotein.for.23629-25513.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.23629-25513.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.23629-25513.120301b_Contig108%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1336%7Cprotein.for.23583-25036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.23583-25036.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.23583-25036.Ar_EST_120301b_c1336%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12861%7Couter.for.26766-28223.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.26766-28223.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.26766-28223.Ar_EST_120301b_c12861%7Couter.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8318%7Corigin.for.33442-35248.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.33442-35248.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.33442-35248.Ar_EST_120301b_c8318%7Corigin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15788%7Cprotein.for.35397-36741.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.35397-36741.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.35397-36741.Ar_EST_120301b_c15788%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15057%7Chypothetical.for.37196-38399.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.37196-38399.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.37196-38399.Ar_EST_120301b_c15057%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13382%7Cankyrin.for.38547-39913.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.38547-39913.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.38547-39913.Ar_EST_120301b_c13382%7Cankyrin.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:4 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:5 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090147%7Cgb%7CEFC43800%2E1%7C.for.11234-13175.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.11234-13175.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.11234-13175.gi%7C284090147%7Cgb%7CEFC43800%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090178%7Cgb%7CEFC43831%2E1%7C.for.18566-20543.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.18566-20543.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.18566-20543.gi%7C284090178%7Cgb%7CEFC43831%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084450%7Cgb%7CEFC38143%2E1%7C.for.23716-25578.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.23716-25578.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.23716-25578.gi%7C284084450%7Cgb%7CEFC38143%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087263%7Cgb%7CEFC40934%2E1%7C.for.23716-25578.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.23716-25578.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.23716-25578.gi%7C284087263%7Cgb%7CEFC40934%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093311%7Cgb%7CEFC46949%2E1%7C.for.31780-34157.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.31780-34157.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.31780-34157.gi%7C284093311%7Cgb%7CEFC46949%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095584%7Cgb%7CEFC49214%2E1%7C.for.31780-34052.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.31780-34052.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.31780-34052.gi%7C284095584%7Cgb%7CEFC49214%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086204%7Cgb%7CEFC39882%2E1%7C.for.35715-36694.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.35715-36694.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.35715-36694.gi%7C284086204%7Cgb%7CEFC39882%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088638%7Cgb%7CEFC42300%2E1%7C.for.35605-36721.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.35605-36721.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.35605-36721.gi%7C284088638%7Cgb%7CEFC42300%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:2 now processing 0 total clusters:2 now processing 0 ...processing 0 of 2 ...processing 1 of 2 cleaning clusters.... total clusters:2 now processing 0 total clusters:2 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:5 now processing 0 total clusters:5 now processing 0 total clusters:5 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:5 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:5 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.0-1125.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.0-1125.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.0-1125.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.3300-4231.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.3300-4231.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.3300-4231.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.4443-5430.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.4443-5430.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.4443-5430.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.14124-15960.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.14124-15960.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.14124-15960.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.16348-17526.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.16348-17526.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.16348-17526.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.18756-21813.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.18756-21813.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.18756-21813.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.23782-25313.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.23782-25313.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.23782-25313.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.26965-28023.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.26965-28023.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.26965-28023.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.33641-35048.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.33641-35048.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.33641-35048.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.35596-36541.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.35596-36541.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.35596-36541.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.5079-6250.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.5079-6250.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.5079-6250.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.8210-9159.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.8210-9159.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.8210-9159.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.15066-15820.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.15066-15820.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.15066-15820.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.31979-33957.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.31979-33957.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.31979-33957.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C11 Length: 25661 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C11.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C11.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12658%7Csurface.for.11183-12467.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.11183-12467.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.11183-12467.Ar_EST_120301b_c12658%7Csurface.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17333%7C---NA---.for.12804-13730.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.12804-13730.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.12804-13730.Ar_EST_120301b_c17333%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1625%7Cpredicted.for.13250-14650.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.13250-14650.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.13250-14650.Ar_EST_120301b_c1625%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10919%7Chistone.for.13946-15700.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.13946-15700.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.13946-15700.Ar_EST_120301b_c10919%7Chistone.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9390%7Cniemann-pick.for.23587-25127.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.23587-25127.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.23587-25127.Ar_EST_120301b_c9390%7Cniemann-pick.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c579%7Cpatched.for.24367-25661.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.24367-25661.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.24367-25661.Ar_EST_120301b_c579%7Cpatched.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2814%7Cniemann-pick.for.23796-25595.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.23796-25595.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.23796-25595.Ar_EST_120301b_c2814%7Cniemann-pick.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:4 now processing 0 total clusters:4 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:4 now processing 0 total clusters:4 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:14 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:14 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:22 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:37 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:19 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:19 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:19 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:25 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:18 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:10 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.335-2502.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.335-2502.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.335-2502.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.for.539-2493.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.539-2493.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.539-2493.gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.for.512-2502.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.512-2502.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.512-2502.gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085983%7Cgb%7CEFC39663%2E1%7C.for.551-2454.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2454.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2454.gi%7C284085983%7Cgb%7CEFC39663%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.for.521-2502.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.521-2502.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.521-2502.gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085992%7Cgb%7CEFC39672%2E1%7C.for.161-2502.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.161-2502.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.161-2502.gi%7C284085992%7Cgb%7CEFC39672%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.for.557-2670.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.557-2670.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.557-2670.gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.for.671-2022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.671-2022.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.671-2022.gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088147%7Cgb%7CEFC41812%2E1%7C.for.554-2562.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.554-2562.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.554-2562.gi%7C284088147%7Cgb%7CEFC41812%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.for.548-2502.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2502.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2502.gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.for.548-2511.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2511.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2511.gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.for.524-2553.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.524-2553.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.524-2553.gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.for.539-2508.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.539-2508.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.539-2508.gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082687%7Cgb%7CEFC36400%2E1%7C.for.551-2505.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2505.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2505.gi%7C284082687%7Cgb%7CEFC36400%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.for.512-2505.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.512-2505.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.512-2505.gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085285%7Cgb%7CEFC38970%2E1%7C.for.551-2406.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2406.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2406.gi%7C284085285%7Cgb%7CEFC38970%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.for.548-2511.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2511.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2511.gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.for.551-2493.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2493.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2493.gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088717%7Cgb%7CEFC42379%2E1%7C.for.551-2475.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2475.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2475.gi%7C284088717%7Cgb%7CEFC42379%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097002%7Cgb%7CEFC50629%2E1%7C.for.548-2499.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2499.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2499.gi%7C284097002%7Cgb%7CEFC50629%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081579%7Cgb%7CEFC35529%2E1%7C.for.551-2472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2472.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2472.gi%7C284081579%7Cgb%7CEFC35529%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.for.545-2508.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.545-2508.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.545-2508.gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.for.548-2472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2472.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2472.gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.for.506-2481.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.506-2481.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.506-2481.gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.for.551-2484.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2484.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2484.gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.for.494-2511.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.494-2511.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.494-2511.gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.for.452-2454.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.452-2454.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.452-2454.gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.for.548-2493.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2493.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2493.gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.for.668-2457.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.668-2457.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.668-2457.gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.for.479-2472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.479-2472.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.479-2472.gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092203%7Cgb%7CEFC45846%2E1%7C.for.536-2511.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.536-2511.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.536-2511.gi%7C284092203%7Cgb%7CEFC45846%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.for.488-2541.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.488-2541.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.488-2541.gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095044%7Cgb%7CEFC48676%2E1%7C.for.542-2475.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.542-2475.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.542-2475.gi%7C284095044%7Cgb%7CEFC48676%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083967%7Cgb%7CEFC37665%2E1%7C.for.530-2553.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.530-2553.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.530-2553.gi%7C284083967%7Cgb%7CEFC37665%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087857%7Cgb%7CEFC41524%2E1%7C.for.548-2511.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2511.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2511.gi%7C284087857%7Cgb%7CEFC41524%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.for.584-2448.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.584-2448.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.584-2448.gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084868%7Cgb%7CEFC38556%2E1%7C.for.17759-19557.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.17759-19557.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.17759-19557.gi%7C284084868%7Cgb%7CEFC38556%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096986%7Cgb%7CEFC50613%2E1%7C.for.19699-21620.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.19699-21620.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.19699-21620.gi%7C284096986%7Cgb%7CEFC50613%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085045%7Cgb%7CEFC38732%2E1%7C.for.23527-25661.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.23527-25661.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.23527-25661.gi%7C284085045%7Cgb%7CEFC38732%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:3 now processing 0 total clusters:3 now processing 0 total clusters:3 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:3 now processing 0 total clusters:3 now processing 0 total clusters:3 now processing 0 ...processing 0 of 32 ...processing 1 of 32 ...processing 2 of 32 ...processing 3 of 32 ...processing 4 of 32 ...processing 5 of 32 ...processing 6 of 32 ...processing 7 of 32 ...processing 8 of 32 ...processing 9 of 32 ...processing 10 of 32 ...processing 11 of 32 ...processing 12 of 32 ...processing 13 of 32 ...processing 14 of 32 ...processing 15 of 32 ...processing 16 of 32 ...processing 17 of 32 ...processing 18 of 32 ...processing 19 of 32 ...processing 20 of 32 ...trimming the rest flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:3 now processing 0 total clusters:3 now processing 0 total clusters:3 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:3 now processing 0 ...processing 0 of 20 ...processing 1 of 20 ...processing 2 of 20 ...processing 3 of 20 ...processing 4 of 20 ...processing 5 of 20 ...processing 6 of 20 ...processing 7 of 20 ...processing 8 of 20 ...processing 9 of 20 ...processing 10 of 20 ...processing 11 of 20 ...processing 12 of 20 ...processing 13 of 20 ...processing 14 of 20 ...processing 15 of 20 ...processing 16 of 20 ...processing 17 of 20 ...processing 18 of 20 ...processing 19 of 20 ...trimming the rest ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:3 now processing 0 total clusters:3 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.11382-12267.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.11382-12267.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.11382-12267.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.19898-21420.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.19898-21420.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.19898-21420.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.23726-25661.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.23726-25661.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.23726-25661.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.651-2335.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.651-2335.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.651-2335.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.13449-15575.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.13449-15575.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.13449-15575.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C12 Length: 151965 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:4 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:1 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:5 current j:0 j_size:5 current j:1 j_size:5 current j:2 j_size:5 current j:3 j_size:5 current j:4 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C12.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C12.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:10 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:4 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c728%7C600592206f1.for.1-1027.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.1-1027.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.1-1027.Ar_EST_120301b_c728%7C600592206f1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20258%7Cfq662406.for.1273-3642.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.1273-3642.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.1273-3642.Ar_EST_120301b_c20258%7Cfq662406.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11238%7Cwith.for.3899-5314.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.3899-5314.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.3899-5314.Ar_EST_120301b_c11238%7Cwith.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig287%7Cwith.for.4446-6729.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.4446-6729.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.4446-6729.120301b_Contig287%7Cwith.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4923%7Cconserved.for.5017-6047.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.5017-6047.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.5017-6047.Ar_EST_120301b_rep_c4923%7Cconserved.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c378%7Ccbnf.for.6989-8771.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.6989-8771.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.6989-8771.Ar_EST_120301b_c378%7Ccbnf.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3189%7Cdiaphanous-related.for.7781-9843.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.7781-9843.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.7781-9843.Ar_EST_120301b_c3189%7Cdiaphanous-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1550%7Cdiaphanous-related.for.9665-11058.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.9665-11058.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.9665-11058.Ar_EST_120301b_c1550%7Cdiaphanous-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11195%7Cmagnesium.for.24231-25451.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.24231-25451.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.24231-25451.Ar_EST_120301b_c11195%7Cmagnesium.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18198%7Creplication.for.26279-27668.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.26279-27668.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.26279-27668.Ar_EST_120301b_c18198%7Creplication.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18234%7Cham.for.26021-27411.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.26021-27411.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.26021-27411.Ar_EST_120301b_c18234%7Cham.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13712%7Creplication.for.27060-28313.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.27060-28313.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.27060-28313.Ar_EST_120301b_c13712%7Creplication.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9222%7Creplication.for.28102-29380.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.28102-29380.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.28102-29380.Ar_EST_120301b_c9222%7Creplication.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c527%7CPREDICTED%3A.for.28874-30302.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.28874-30302.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.28874-30302.Ar_EST_120301b_c527%7CPREDICTED%3A.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1382%7Cprotein.for.30821-32102.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.30821-32102.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.30821-32102.Ar_EST_120301b_c1382%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c651%7C40s.for.32109-34724.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.32109-34724.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.32109-34724.Ar_EST_120301b_c651%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15484%7C---NA---.for.32165-33345.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.32165-33345.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.32165-33345.Ar_EST_120301b_c15484%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4119%7Cmhck.for.36707-38256.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.36707-38256.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.36707-38256.Ar_EST_120301b_rep_c4119%7Cmhck.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10138%7Cmhck.for.37169-38246.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.37169-38246.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.37169-38246.Ar_EST_120301b_rep_c10138%7Cmhck.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15620%7Cmhck.for.37202-38226.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.37202-38226.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.37202-38226.Ar_EST_120301b_rep_c15620%7Cmhck.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5645%7Cmhck.for.36710-38207.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.36710-38207.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.36710-38207.Ar_EST_120301b_rep_c5645%7Cmhck.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1100%7Chypothetical.for.38822-40252.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.38822-40252.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.38822-40252.Ar_EST_120301b_c1100%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1316%7Cpeptide.for.40496-42494.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.40496-42494.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.40496-42494.Ar_EST_120301b_c1316%7Cpeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8577%7Cpeptide.for.41083-42501.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.41083-42501.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.41083-42501.Ar_EST_120301b_c8577%7Cpeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11844%7Csymbiotic.for.45845-47323.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.45845-47323.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.45845-47323.Ar_EST_120301b_c11844%7Csymbiotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18328%7Chypothetical.for.47200-48548.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.47200-48548.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.47200-48548.Ar_EST_120301b_c18328%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15267%7C---NA---.for.48658-49505.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.48658-49505.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.48658-49505.Ar_EST_120301b_c15267%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9869%7Ccell.for.51245-52959.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.51245-52959.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.51245-52959.Ar_EST_120301b_c9869%7Ccell.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17405%7Ccell.for.52390-53708.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.52390-53708.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.52390-53708.Ar_EST_120301b_c17405%7Ccell.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2712%7Cprotein.for.53486-55207.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.53486-55207.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.53486-55207.Ar_EST_120301b_c2712%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2244%7Cphosphomannomutase.for.54527-56081.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.54527-56081.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.54527-56081.Ar_EST_120301b_c2244%7Cphosphomannomutase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12102%7C---NA---.for.55329-56645.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.55329-56645.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.55329-56645.Ar_EST_120301b_c12102%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig305%7C78.for.59657-62478.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59657-62478.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59657-62478.120301b_Contig305%7C78.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20111%7Cgtp-binding.for.60232-61394.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.60232-61394.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.60232-61394.Ar_EST_120301b_rep_c20111%7Cgtp-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12799%7Cheat.for.59885-61210.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59885-61210.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59885-61210.Ar_EST_120301b_rep_c12799%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5590%7Cglucose.for.59659-61634.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59659-61634.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59659-61634.Ar_EST_120301b_rep_c5590%7Cglucose.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5697%7Cluminal.for.60638-62264.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.60638-62264.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.60638-62264.Ar_EST_120301b_rep_c5697%7Cluminal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c730%7Cpeptidyl-prolyl.for.62422-63765.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62422-63765.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62422-63765.Ar_EST_120301b_c730%7Cpeptidyl-prolyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16254%7Cbx752014.for.68805-70068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.68805-70068.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.68805-70068.Ar_EST_120301b_c16254%7Cbx752014.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2267%7C3-hydroxyacyl-.for.74154-75649.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.74154-75649.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.74154-75649.Ar_EST_120301b_c2267%7C3-hydroxyacyl-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10600%7Cshort-chain.for.74398-75478.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.74398-75478.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.74398-75478.Ar_EST_120301b_c10600%7Cshort-chain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11679%7C---NA---.for.76004-77182.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.76004-77182.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.76004-77182.Ar_EST_120301b_c11679%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4144%7Czinc.for.77468-79097.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.77468-79097.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.77468-79097.Ar_EST_120301b_rep_c4144%7Czinc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5140%7Cnotch.for.77764-79199.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.77764-79199.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.77764-79199.Ar_EST_120301b_rep_c5140%7Cnotch.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11995%7Csensitivity.for.78617-80004.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.78617-80004.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.78617-80004.Ar_EST_120301b_c11995%7Csensitivity.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18400%7Cprotein.for.83478-84841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.83478-84841.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.83478-84841.Ar_EST_120301b_c18400%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14469%7Cprotein.for.84247-85627.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.84247-85627.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.84247-85627.Ar_EST_120301b_c14469%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3303%7Cmolybdenum.for.91771-93085.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.91771-93085.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.91771-93085.Ar_EST_120301b_c3303%7Cmolybdenum.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig225%7Cmolybdenum.for.90117-92666.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.90117-92666.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.90117-92666.120301b_Contig225%7Cmolybdenum.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10477%7Cpa-phosphatase.for.93514-95251.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.93514-95251.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.93514-95251.Ar_EST_120301b_c10477%7Cpa-phosphatase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9955%7Cmeloidogyne.for.93697-94715.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.93697-94715.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.93697-94715.Ar_EST_120301b_c9955%7Cmeloidogyne.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11581%7Cprotein.for.94100-95577.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.94100-95577.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.94100-95577.Ar_EST_120301b_c11581%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19576%7Cfusca.for.94823-96350.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.94823-96350.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.94823-96350.Ar_EST_120301b_rep_c19576%7Cfusca.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig170%7Cprotein.for.94827-96951.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.94827-96951.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.94827-96951.120301b_Contig170%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7131%7Cferrichrome.for.96302-97853.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96302-97853.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96302-97853.Ar_EST_120301b_rep_c7131%7Cferrichrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13182%7C---NA---.for.96455-97783.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96455-97783.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96455-97783.Ar_EST_120301b_rep_c13182%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c6331%7Ccu619418.for.96329-97526.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96329-97526.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96329-97526.Ar_EST_120301b_c6331%7Ccu619418.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig502%7Cferrichrome.for.96303-97897.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96303-97897.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96303-97897.120301b_Contig502%7Cferrichrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9400%7Cmus06-.for.96344-97727.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96344-97727.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96344-97727.Ar_EST_120301b_rep_c9400%7Cmus06-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12703%7Cdisulfide.for.96546-97781.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96546-97781.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96546-97781.Ar_EST_120301b_rep_c12703%7Cdisulfide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5321%7C-.for.96317-97706.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96317-97706.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96317-97706.Ar_EST_120301b_rep_c5321%7C-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11637%7Ccczb.for.96273-97722.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96273-97722.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96273-97722.Ar_EST_120301b_rep_c11637%7Ccczb.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15753%7Coligopeptide.for.96409-97810.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96409-97810.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96409-97810.Ar_EST_120301b_rep_c15753%7Coligopeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5757%7Cdisulfide.for.96700-97781.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96700-97781.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96700-97781.Ar_EST_120301b_rep_c5757%7Cdisulfide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13003%7Ce3.for.96709-97781.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96709-97781.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96709-97781.Ar_EST_120301b_rep_c13003%7Ce3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6679%7C9787.for.96302-97783.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96302-97783.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96302-97783.Ar_EST_120301b_rep_c6679%7C9787.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12673%7Cubiquitin-protein.for.96641-97769.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96641-97769.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96641-97769.Ar_EST_120301b_rep_c12673%7Cubiquitin-protein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4609%7Cprotein.for.96302-97810.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96302-97810.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96302-97810.Ar_EST_120301b_rep_c4609%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15179%7C---NA---.for.96524-97715.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96524-97715.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96524-97715.Ar_EST_120301b_rep_c15179%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14025%7C---NA---.for.98770-99965.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.98770-99965.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.98770-99965.Ar_EST_120301b_c14025%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig23%7Cprotein.for.100923-102492.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.100923-102492.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.100923-102492.120301b_Contig23%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15597%7Cgpgc_est01533.for.102951-104268.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.102951-104268.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.102951-104268.Ar_EST_120301b_c15597%7Cgpgc_est01533.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14029%7Ccbwo.for.103484-104861.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.103484-104861.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.103484-104861.Ar_EST_120301b_c14029%7Ccbwo.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1391%7Cmonothiol.for.105135-106412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105135-106412.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105135-106412.Ar_EST_120301b_c1391%7Cmonothiol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11256%7Cbipolar.for.107074-109113.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.107074-109113.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.107074-109113.Ar_EST_120301b_c11256%7Cbipolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10687%7C---NA---.for.108374-109747.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.108374-109747.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.108374-109747.Ar_EST_120301b_c10687%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11166%7Cphosphatidylethanolamine.for.110002-111393.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.110002-111393.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.110002-111393.Ar_EST_120301b_c11166%7Cphosphatidylethanolamine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15500%7Cphosphatidylethanolaminen-methyltransferase-lik.for.110586-111697.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.110586-111697.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.110586-111697.Ar_EST_120301b_c15500%7Cphosphatidylethanolaminen-methyltransferase-lik.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig910%7Cphosphatidylethanolaminen-methyltransferase-lik.for.111061-112546.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.111061-112546.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.111061-112546.120301b_Contig910%7Cphosphatidylethanolaminen-methyltransferase-lik.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig127%7Csh3.for.113661-115293.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.113661-115293.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.113661-115293.120301b_Contig127%7Csh3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig422%7Csh3.for.114866-116880.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.114866-116880.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.114866-116880.120301b_Contig422%7Csh3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7745%7Cdedicator.for.116151-118278.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.116151-118278.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.116151-118278.Ar_EST_120301b_c7745%7Cdedicator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8510%7Ctranscription.for.118339-119509.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.118339-119509.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.118339-119509.Ar_EST_120301b_rep_c8510%7Ctranscription.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1228%7Cdedicator.for.117330-119916.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.117330-119916.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.117330-119916.120301b_Contig1228%7Cdedicator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18015%7Cinosine-uridine.for.119625-120965.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.119625-120965.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.119625-120965.Ar_EST_120301b_c18015%7Cinosine-uridine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2577%7Cprotein.for.124415-126298.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.124415-126298.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.124415-126298.Ar_EST_120301b_c2577%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9484%7C1533272.for.125735-126997.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.125735-126997.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.125735-126997.Ar_EST_120301b_c9484%7C1533272.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8218%7Cprotein.for.126743-128790.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.126743-128790.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.126743-128790.Ar_EST_120301b_c8218%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13412%7C---NA---.for.128342-129516.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.128342-129516.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.128342-129516.Ar_EST_120301b_c13412%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19599%7Chec.for.129431-130776.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.129431-130776.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.129431-130776.Ar_EST_120301b_c19599%7Chec.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8962%7Cchromosome.for.129082-130441.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.129082-130441.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.129082-130441.Ar_EST_120301b_c8962%7Cchromosome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2192%7Cphosphatidic.for.135132-136930.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.135132-136930.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.135132-136930.Ar_EST_120301b_c2192%7Cphosphatidic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15138%7Clib4217-068-r1-k1-b1.for.136433-137418.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.136433-137418.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.136433-137418.Ar_EST_120301b_c15138%7Clib4217-068-r1-k1-b1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15263%7C---NA---.for.136631-137561.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.136631-137561.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.136631-137561.Ar_EST_120301b_rep_c15263%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2905%7C---NA---.for.137181-139024.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.137181-139024.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.137181-139024.Ar_EST_120301b_c2905%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig48%7C---NA---.for.138537-140647.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.138537-140647.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.138537-140647.120301b_Contig48%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16578%7Csigmae.for.149378-151076.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.149378-151076.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.149378-151076.Ar_EST_120301b_c16578%7Csigmae.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17410%7Ctetratricopeptide.for.150544-151872.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.150544-151872.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.150544-151872.Ar_EST_120301b_c17410%7Ctetratricopeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18065%7Ctetratricopeptide.for.150570-151821.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.150570-151821.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.150570-151821.Ar_EST_120301b_c18065%7Ctetratricopeptide.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:46 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:43 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:50 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:46 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:26 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:40 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:48 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:36 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093495%7Cgb%7CEFC47133%2E1%7C.for.3581-5384.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.3581-5384.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.3581-5384.gi%7C284093495%7Cgb%7CEFC47133%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090291%7Cgb%7CEFC43943%2E1%7C.for.4015-5161.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.4015-5161.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.4015-5161.gi%7C284090291%7Cgb%7CEFC43943%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084873%7Cgb%7CEFC38561%2E1%7C.for.4027-5218.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.4027-5218.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.4027-5218.gi%7C284084873%7Cgb%7CEFC38561%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097132%7Cgb%7CEFC50759%2E1%7C.for.4027-5155.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.4027-5155.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.4027-5155.gi%7C284097132%7Cgb%7CEFC50759%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091842%7Cgb%7CEFC45487%2E1%7C.for.24248-26025.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.24248-26025.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.24248-26025.gi%7C284091842%7Cgb%7CEFC45487%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092123%7Cgb%7CEFC45766%2E1%7C.for.26817-29382.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.26817-29382.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.26817-29382.gi%7C284092123%7Cgb%7CEFC45766%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083554%7Cgb%7CEFC37256%2E1%7C.for.29087-30486.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.29087-30486.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.29087-30486.gi%7C284083554%7Cgb%7CEFC37256%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084643%7Cgb%7CEFC38333%2E1%7C.for.49616-50949.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.49616-50949.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.49616-50949.gi%7C284084643%7Cgb%7CEFC38333%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C1705642%7Csp%7CP53441%2E1%7CCATR_NAEGR.for.49616-50949.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.49616-50949.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.49616-50949.gi%7C1705642%7Csp%7CP53441%2E1%7CCATR_NAEGR.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C972963%7Cgb%7CAAA75032%2E1%7C.for.49616-50949.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.49616-50949.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.49616-50949.gi%7C972963%7Cgb%7CAAA75032%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091881%7Cgb%7CEFC45525%2E1%7C.for.49598-50883.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.49598-50883.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.49598-50883.gi%7C284091881%7Cgb%7CEFC45525%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086029%7Cgb%7CEFC39708%2E1%7C.for.53762-55182.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.53762-55182.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.53762-55182.gi%7C284086029%7Cgb%7CEFC39708%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094206%7Cgb%7CEFC47841%2E1%7C.for.54553-56087.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.54553-56087.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.54553-56087.gi%7C284094206%7Cgb%7CEFC47841%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092821%7Cgb%7CEFC46461%2E1%7C.for.55858-60224.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.55858-60224.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.55858-60224.gi%7C284092821%7Cgb%7CEFC46461%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083022%7Cgb%7CEFC36730%2E1%7C.for.56017-60167.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.56017-60167.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.56017-60167.gi%7C284083022%7Cgb%7CEFC36730%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093552%7Cgb%7CEFC47189%2E1%7C.for.55819-60119.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.55819-60119.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.55819-60119.gi%7C284093552%7Cgb%7CEFC47189%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085695%7Cgb%7CEFC39377%2E1%7C.for.55768-60191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.55768-60191.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.55768-60191.gi%7C284085695%7Cgb%7CEFC39377%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082133%7Cgb%7CEFC35904%2E1%7C.for.56092-57512.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.56092-57512.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.56092-57512.gi%7C284082133%7Cgb%7CEFC35904%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091446%7Cgb%7CEFC45093%2E1%7C.for.59738-62358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59738-62358.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59738-62358.gi%7C284091446%7Cgb%7CEFC45093%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094819%7Cgb%7CEFC48452%2E1%7C.for.59918-62361.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59918-62361.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59918-62361.gi%7C284094819%7Cgb%7CEFC48452%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084267%7Cgb%7CEFC37961%2E1%7C.for.59996-62367.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59996-62367.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59996-62367.gi%7C284084267%7Cgb%7CEFC37961%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092327%7Cgb%7CEFC45969%2E1%7C.for.59813-62445.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59813-62445.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59813-62445.gi%7C284092327%7Cgb%7CEFC45969%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084526%7Cgb%7CEFC38218%2E1%7C.for.59685-62454.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59685-62454.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59685-62454.gi%7C284084526%7Cgb%7CEFC38218%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082776%7Cgb%7CEFC36488%2E1%7C.for.59762-62358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59762-62358.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59762-62358.gi%7C284082776%7Cgb%7CEFC36488%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085272%7Cgb%7CEFC38957%2E1%7C.for.59762-62358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59762-62358.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59762-62358.gi%7C284085272%7Cgb%7CEFC38957%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085885%7Cgb%7CEFC39565%2E1%7C.for.59762-62358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59762-62358.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59762-62358.gi%7C284085885%7Cgb%7CEFC39565%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085240%7Cgb%7CEFC38925%2E1%7C.for.59762-62358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59762-62358.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59762-62358.gi%7C284085240%7Cgb%7CEFC38925%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C33694258%7Cgb%7CAAQ24867%2E1%7C.for.59726-62358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59726-62358.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59726-62358.gi%7C33694258%7Cgb%7CAAQ24867%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089387%7Cgb%7CEFC43045%2E1%7C.for.59726-62358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59726-62358.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59726-62358.gi%7C284089387%7Cgb%7CEFC43045%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081155%7Cgb%7CEFC35313%2E1%7C.for.62542-63800.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62542-63800.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62542-63800.gi%7C284081155%7Cgb%7CEFC35313%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092983%7Cgb%7CEFC46623%2E1%7C.for.62542-63800.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62542-63800.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62542-63800.gi%7C284092983%7Cgb%7CEFC46623%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085514%7Cgb%7CEFC39197%2E1%7C.for.62548-63833.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62548-63833.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62548-63833.gi%7C284085514%7Cgb%7CEFC39197%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088464%7Cgb%7CEFC42127%2E1%7C.for.62728-63800.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62728-63800.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62728-63800.gi%7C284088464%7Cgb%7CEFC42127%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094883%7Cgb%7CEFC48516%2E1%7C.for.62734-63803.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62734-63803.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62734-63803.gi%7C284094883%7Cgb%7CEFC48516%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086458%7Cgb%7CEFC40134%2E1%7C.for.62734-63800.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62734-63800.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62734-63800.gi%7C284086458%7Cgb%7CEFC40134%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089438%7Cgb%7CEFC43095%2E1%7C.for.74105-75710.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.74105-75710.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.74105-75710.gi%7C284089438%7Cgb%7CEFC43095%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089747%7Cgb%7CEFC43403%2E1%7C.for.82024-83787.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82024-83787.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82024-83787.gi%7C284089747%7Cgb%7CEFC43403%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088991%7Cgb%7CEFC42651%2E1%7C.for.82054-84055.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82054-84055.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82054-84055.gi%7C284088991%7Cgb%7CEFC42651%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092256%7Cgb%7CEFC45899%2E1%7C.for.82090-83787.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82090-83787.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82090-83787.gi%7C284092256%7Cgb%7CEFC45899%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081561%7Cgb%7CEFC35518%2E1%7C.for.82084-83787.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82084-83787.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82084-83787.gi%7C284081561%7Cgb%7CEFC35518%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082242%7Cgb%7CEFC35988%2E1%7C.for.82117-83787.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82117-83787.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82117-83787.gi%7C284082242%7Cgb%7CEFC35988%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094373%7Cgb%7CEFC48007%2E1%7C.for.82021-83802.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82021-83802.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82021-83802.gi%7C284094373%7Cgb%7CEFC48007%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087115%7Cgb%7CEFC40787%2E1%7C.for.82018-83766.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82018-83766.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82018-83766.gi%7C284087115%7Cgb%7CEFC40787%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087025%7Cgb%7CEFC40697%2E1%7C.for.82018-83781.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82018-83781.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82018-83781.gi%7C284087025%7Cgb%7CEFC40697%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093068%7Cgb%7CEFC46707%2E1%7C.for.82087-84040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82087-84040.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82087-84040.gi%7C284093068%7Cgb%7CEFC46707%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091439%7Cgb%7CEFC45086%2E1%7C.for.82030-83805.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82030-83805.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82030-83805.gi%7C284091439%7Cgb%7CEFC45086%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088654%7Cgb%7CEFC42316%2E1%7C.for.82084-83787.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82084-83787.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82084-83787.gi%7C284088654%7Cgb%7CEFC42316%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090654%7Cgb%7CEFC44305%2E1%7C.for.80395-84052.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.80395-84052.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.80395-84052.gi%7C284090654%7Cgb%7CEFC44305%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096156%7Cgb%7CEFC49785%2E1%7C.for.82108-83763.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82108-83763.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82108-83763.gi%7C284096156%7Cgb%7CEFC49785%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093767%7Cgb%7CEFC47404%2E1%7C.for.82003-83778.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82003-83778.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82003-83778.gi%7C284093767%7Cgb%7CEFC47404%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086663%7Cgb%7CEFC40338%2E1%7C.for.85626-86563.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.85626-86563.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.85626-86563.gi%7C284086663%7Cgb%7CEFC40338%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084726%7Cgb%7CEFC38415%2E1%7C.for.90734-91704.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.90734-91704.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.90734-91704.gi%7C284084726%7Cgb%7CEFC38415%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088468%7Cgb%7CEFC42131%2E1%7C.for.92844-94195.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.92844-94195.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.92844-94195.gi%7C284088468%7Cgb%7CEFC42131%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086633%7Cgb%7CEFC40308%2E1%7C.for.94814-96942.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.94814-96942.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.94814-96942.gi%7C284086633%7Cgb%7CEFC40308%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096908%7Cgb%7CEFC50535%2E1%7C.for.105234-106381.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105234-106381.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105234-106381.gi%7C284096908%7Cgb%7CEFC50535%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089747%7Cgb%7CEFC43403%2E1%7C.for.105883-107777.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105883-107777.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105883-107777.gi%7C284089747%7Cgb%7CEFC43403%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082242%7Cgb%7CEFC35988%2E1%7C.for.106003-107663.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.106003-107663.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.106003-107663.gi%7C284082242%7Cgb%7CEFC35988%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094373%7Cgb%7CEFC48007%2E1%7C.for.105853-107771.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105853-107771.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105853-107771.gi%7C284094373%7Cgb%7CEFC48007%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093549%7Cgb%7CEFC47186%2E1%7C.for.105874-108389.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105874-108389.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105874-108389.gi%7C284093549%7Cgb%7CEFC47186%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091439%7Cgb%7CEFC45086%2E1%7C.for.105874-107756.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105874-107756.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105874-107756.gi%7C284091439%7Cgb%7CEFC45086%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085654%7Cgb%7CEFC39336%2E1%7C.for.105868-107768.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105868-107768.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105868-107768.gi%7C284085654%7Cgb%7CEFC39336%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088654%7Cgb%7CEFC42316%2E1%7C.for.105982-107687.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105982-107687.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105982-107687.gi%7C284088654%7Cgb%7CEFC42316%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084300%7Cgb%7CEFC37994%2E1%7C.for.109953-112547.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.109953-112547.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.109953-112547.gi%7C284084300%7Cgb%7CEFC37994%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093284%7Cgb%7CEFC46922%2E1%7C.for.113649-119929.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.113649-119929.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.113649-119929.gi%7C284093284%7Cgb%7CEFC46922%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092928%7Cgb%7CEFC46568%2E1%7C.for.147396-149152.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.147396-149152.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.147396-149152.gi%7C284092928%7Cgb%7CEFC46568%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:18 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:18 now processing 0 ...processing 0 of 11 ...processing 1 of 11 ...processing 2 of 11 ...processing 3 of 11 ...processing 4 of 11 ...processing 5 of 11 ...processing 6 of 11 ...processing 7 of 11 ...processing 8 of 11 ...processing 9 of 11 ...processing 10 of 11 total clusters:18 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:18 now processing 0 total clusters:18 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:16 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:16 now processing 0 ...processing 0 of 11 ...processing 1 of 11 ...processing 2 of 11 ...processing 3 of 11 ...processing 4 of 11 ...processing 5 of 11 ...processing 6 of 11 ...processing 7 of 11 ...processing 8 of 11 ...processing 9 of 11 ...processing 10 of 11 total clusters:16 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:16 now processing 0 total clusters:16 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:16 now processing 0 total clusters:16 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:25 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:25 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.1472-3444.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.1472-3444.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.1472-3444.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.3780-6529.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.3780-6529.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.3780-6529.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.7980-10858.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.7980-10858.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.7980-10858.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.24430-25871.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.24430-25871.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.24430-25871.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.26082-29425.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.26082-29425.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.26082-29425.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.40695-42306.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.40695-42306.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.40695-42306.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.46044-47123.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.46044-47123.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.46044-47123.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.53685-55887.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.53685-55887.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.53685-55887.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.76160-76982.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.76160-76982.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.76160-76982.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.77639-79020.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.77639-79020.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.77639-79020.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.83677-85427.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.83677-85427.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.83677-85427.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.90316-92885.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.90316-92885.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.90316-92885.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.93043-95377.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.93043-95377.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.93043-95377.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.103150-104661.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.103150-104661.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.103150-104661.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.105334-109562.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.105334-109562.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.105334-109562.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.113848-119729.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.113848-119729.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.113848-119729.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.119765-120770.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.119765-120770.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.119765-120770.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.124614-126828.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.124614-126828.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.124614-126828.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.126942-129316.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.126942-129316.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.126942-129316.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.135331-136730.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.135331-136730.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.135331-136730.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.147595-150876.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.147595-150876.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.147595-150876.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.0-827.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.0-827.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.0-827.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.29073-30289.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.29073-30289.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.29073-30289.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.31020-31920.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.31020-31920.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.31020-31920.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.32362-33211.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.32362-33211.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.32362-33211.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.36906-38056.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.36906-38056.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.36906-38056.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.47399-48348.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.47399-48348.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.47399-48348.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.49797-50749.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.49797-50749.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.49797-50749.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.51444-53529.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.51444-53529.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.51444-53529.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.55528-62278.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.55528-62278.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.55528-62278.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.62621-63668.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.62621-63668.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.62621-63668.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.69004-69868.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.69004-69868.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.69004-69868.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.74304-75510.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.74304-75510.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.74304-75510.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.78816-79874.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.78816-79874.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.78816-79874.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.80594-83855.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.80594-83855.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.80594-83855.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.95013-97791.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.95013-97791.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.95013-97791.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.101122-102292.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.101122-102292.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.101122-102292.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.110152-112347.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.110152-112347.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.110152-112347.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.129281-130576.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.129281-130576.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.129281-130576.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.136620-137227.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.136620-137227.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.136620-137227.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/40_0.137380-140447.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/40_0.137380-140447.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/40_0.137380-140447.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/41_0.150743-151676.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/41_0.150743-151676.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/41_0.150743-151676.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C13 Length: 94253 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:3 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:1 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C13.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C13.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3661%7Cddb1-.for.1745-3537.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.1745-3537.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.1745-3537.Ar_EST_120301b_c3661%7Cddb1-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig808%7Carv1-like.for.2831-4363.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.2831-4363.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.2831-4363.120301b_Contig808%7Carv1-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18040%7Chydra.for.8499-9557.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.8499-9557.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.8499-9557.Ar_EST_120301b_c18040%7Chydra.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9342%7Cheat.for.12830-13893.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.12830-13893.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.12830-13893.Ar_EST_120301b_c9342%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12165%7Capoptosis.for.13946-15307.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.13946-15307.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.13946-15307.Ar_EST_120301b_c12165%7Capoptosis.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1412%7Cprotein.for.15657-17513.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.15657-17513.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.15657-17513.Ar_EST_120301b_c1412%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17790%7Ceimeria.for.16740-18028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.16740-18028.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.16740-18028.Ar_EST_120301b_c17790%7Ceimeria.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15312%7Cpredicted.for.17459-19020.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.17459-19020.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.17459-19020.Ar_EST_120301b_c15312%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1936%7Cbeta-catenin-like.for.20721-22008.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.20721-22008.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.20721-22008.Ar_EST_120301b_c1936%7Cbeta-catenin-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16537%7C---NA---.for.21351-22641.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.21351-22641.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.21351-22641.Ar_EST_120301b_c16537%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15992%7C---NA---.for.22668-23828.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.22668-23828.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.22668-23828.Ar_EST_120301b_c15992%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14531%7Chfmidgut6l20.for.23049-24066.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.23049-24066.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.23049-24066.Ar_EST_120301b_c14531%7Chfmidgut6l20.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20424%7Cserine.for.24027-26914.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24027-26914.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24027-26914.Ar_EST_120301b_c20424%7Cserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15621%7C---NA---.for.26261-27545.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.26261-27545.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.26261-27545.Ar_EST_120301b_c15621%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1943%7Cunnamed.for.26952-28306.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.26952-28306.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.26952-28306.Ar_EST_120301b_c1943%7Cunnamed.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3269%7Cvacuolar.for.30273-32149.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.30273-32149.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.30273-32149.Ar_EST_120301b_c3269%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig152%7Cpredicted.for.31784-33714.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.31784-33714.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.31784-33714.120301b_Contig152%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2300%7Cpolysaccharide.for.32622-34650.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.32622-34650.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.32622-34650.Ar_EST_120301b_c2300%7Cpolysaccharide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig777%7Cpredicted.for.34309-36092.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.34309-36092.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.34309-36092.120301b_Contig777%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig734%7Cnucleolar.for.37670-39974.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.37670-39974.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.37670-39974.120301b_Contig734%7Cnucleolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14475%7Cnucleolar.for.38061-39162.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.38061-39162.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.38061-39162.Ar_EST_120301b_c14475%7Cnucleolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10418%7Cdna.for.40207-41624.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.40207-41624.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.40207-41624.Ar_EST_120301b_c10418%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3221%7Cdna.for.41131-43095.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.41131-43095.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.41131-43095.Ar_EST_120301b_c3221%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6645%7Csmall.for.42492-44013.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.42492-44013.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.42492-44013.Ar_EST_120301b_rep_c6645%7Csmall.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6374%7Csmall.for.42392-44097.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.42392-44097.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.42392-44097.Ar_EST_120301b_rep_c6374%7Csmall.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5931%7Cg.for.44474-45483.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.44474-45483.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.44474-45483.Ar_EST_120301b_rep_c5931%7Cg.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4250%7Cg.for.43755-45604.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43755-45604.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43755-45604.Ar_EST_120301b_rep_c4250%7Cg.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1287%7Cbeta.for.45114-47502.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.45114-47502.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.45114-47502.120301b_Contig1287%7Cbeta.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14505%7C---NA---.for.46909-47898.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.46909-47898.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.46909-47898.Ar_EST_120301b_c14505%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8556%7Cglucose.for.49309-50844.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.49309-50844.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.49309-50844.Ar_EST_120301b_c8556%7Cglucose.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18986%7Ctrna.for.49922-51161.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.49922-51161.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.49922-51161.Ar_EST_120301b_c18986%7Ctrna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15011%7Cc-myc-binding.for.50825-51971.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.50825-51971.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.50825-51971.Ar_EST_120301b_c15011%7Cc-myc-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16329%7Cp-type.for.54519-56067.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.54519-56067.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.54519-56067.Ar_EST_120301b_c16329%7Cp-type.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig987%7Cdomain.for.55418-56940.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.55418-56940.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.55418-56940.120301b_Contig987%7Cdomain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c399%7Cp-type.for.57171-58500.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.57171-58500.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.57171-58500.Ar_EST_120301b_c399%7Cp-type.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8892%7Ctransmembrane.for.57005-58272.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.57005-58272.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.57005-58272.Ar_EST_120301b_c8892%7Ctransmembrane.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14963%7Cras.for.57852-59231.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.57852-59231.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.57852-59231.Ar_EST_120301b_c14963%7Cras.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11353%7Cphosphatidylserine.for.62457-63750.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.62457-63750.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.62457-63750.Ar_EST_120301b_c11353%7Cphosphatidylserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9953%7Cphosphatidylserine.for.62954-64357.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.62954-64357.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.62954-64357.Ar_EST_120301b_c9953%7Cphosphatidylserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15385%7Cconserved.for.64079-65170.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.64079-65170.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.64079-65170.Ar_EST_120301b_c15385%7Cconserved.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8704%7Cpeptidyl-trna.for.65595-67100.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.65595-67100.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.65595-67100.Ar_EST_120301b_c8704%7Cpeptidyl-trna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19991%7Ccalcium-dependent.for.66461-67517.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.66461-67517.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.66461-67517.Ar_EST_120301b_rep_c19991%7Ccalcium-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2912%7Ctransmembrane.for.66454-67702.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.66454-67702.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.66454-67702.Ar_EST_120301b_c2912%7Ctransmembrane.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14174%7Cfq834760.for.67005-68053.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.67005-68053.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.67005-68053.Ar_EST_120301b_rep_c14174%7Cfq834760.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19420%7Cactin.for.72710-73909.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.72710-73909.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.72710-73909.Ar_EST_120301b_c19420%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12691%7Calpha.for.73546-74865.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.73546-74865.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.73546-74865.Ar_EST_120301b_c12691%7Calpha.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12365%7Cfp681517.for.74084-75586.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.74084-75586.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.74084-75586.Ar_EST_120301b_c12365%7Cfp681517.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2440%7Cphosphatase.for.78688-80647.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.78688-80647.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.78688-80647.Ar_EST_120301b_c2440%7Cphosphatase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9114%7Cvesicle.for.79865-81214.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.79865-81214.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.79865-81214.Ar_EST_120301b_c9114%7Cvesicle.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig581%7Crcc1.for.82337-85302.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.82337-85302.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.82337-85302.120301b_Contig581%7Crcc1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c339%7Cequilibrative.for.87822-89970.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.87822-89970.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.87822-89970.Ar_EST_120301b_c339%7Cequilibrative.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14139%7Cftfucp0006h12_f_phred13_vc.for.87888-88867.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.87888-88867.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.87888-88867.Ar_EST_120301b_rep_c14139%7Cftfucp0006h12_f_phred13_vc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c457%7Cprotein.for.89276-90684.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.89276-90684.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.89276-90684.Ar_EST_120301b_c457%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18026%7Ccalponin.for.90716-92075.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90716-92075.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90716-92075.Ar_EST_120301b_c18026%7Ccalponin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1402%7Ccalponin.for.90627-92043.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90627-92043.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90627-92043.Ar_EST_120301b_c1402%7Ccalponin.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:47 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:41 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:48 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:46 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:55 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:57 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:44 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:59 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:48 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:32 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081691%7Cgb%7CEFC35595%2E1%7C.for.1746-3262.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.1746-3262.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.1746-3262.gi%7C284081691%7Cgb%7CEFC35595%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081706%7Cgb%7CEFC35605%2E1%7C.for.1746-3073.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.1746-3073.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.1746-3073.gi%7C284081706%7Cgb%7CEFC35605%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081561%7Cgb%7CEFC35518%2E1%7C.for.6248-8048.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6248-8048.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6248-8048.gi%7C284081561%7Cgb%7CEFC35518%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082242%7Cgb%7CEFC35988%2E1%7C.for.6401-8048.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6401-8048.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6401-8048.gi%7C284082242%7Cgb%7CEFC35988%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085654%7Cgb%7CEFC39336%2E1%7C.for.6314-8048.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6314-8048.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6314-8048.gi%7C284085654%7Cgb%7CEFC39336%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091439%7Cgb%7CEFC45086%2E1%7C.for.6284-8048.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6284-8048.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6284-8048.gi%7C284091439%7Cgb%7CEFC45086%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088654%7Cgb%7CEFC42316%2E1%7C.for.6371-8036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6371-8036.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6371-8036.gi%7C284088654%7Cgb%7CEFC42316%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086972%7Cgb%7CEFC40645%2E1%7C.for.6302-7785.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6302-7785.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6302-7785.gi%7C284086972%7Cgb%7CEFC40645%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093767%7Cgb%7CEFC47404%2E1%7C.for.6392-7782.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6392-7782.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6392-7782.gi%7C284093767%7Cgb%7CEFC47404%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090520%7Cgb%7CEFC44171%2E1%7C.for.18491-20354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18491-20354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18491-20354.gi%7C284090520%7Cgb%7CEFC44171%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089855%7Cgb%7CEFC43510%2E1%7C.for.18503-19993.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18503-19993.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18503-19993.gi%7C284089855%7Cgb%7CEFC43510%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089795%7Cgb%7CEFC43450%2E1%7C.for.18542-20120.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18542-20120.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18542-20120.gi%7C284089795%7Cgb%7CEFC43450%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089773%7Cgb%7CEFC43428%2E1%7C.for.18494-20360.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18494-20360.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18494-20360.gi%7C284089773%7Cgb%7CEFC43428%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084776%7Cgb%7CEFC38465%2E1%7C.for.18488-19705.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18488-19705.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18488-19705.gi%7C284084776%7Cgb%7CEFC38465%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087916%7Cgb%7CEFC41583%2E1%7C.for.24189-25692.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25692.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25692.gi%7C284087916%7Cgb%7CEFC41583%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088036%7Cgb%7CEFC41702%2E1%7C.for.24189-25710.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25710.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25710.gi%7C284088036%7Cgb%7CEFC41702%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093143%7Cgb%7CEFC46782%2E1%7C.for.24192-25698.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24192-25698.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24192-25698.gi%7C284093143%7Cgb%7CEFC46782%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085578%7Cgb%7CEFC39261%2E1%7C.for.24338-25701.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24338-25701.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24338-25701.gi%7C284085578%7Cgb%7CEFC39261%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084873%7Cgb%7CEFC38561%2E1%7C.for.24398-25704.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24398-25704.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24398-25704.gi%7C284084873%7Cgb%7CEFC38561%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083993%7Cgb%7CEFC37690%2E1%7C.for.24192-25683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24192-25683.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24192-25683.gi%7C284083993%7Cgb%7CEFC37690%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096422%7Cgb%7CEFC50050%2E1%7C.for.24189-25560.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25560.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25560.gi%7C284096422%7Cgb%7CEFC50050%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088224%7Cgb%7CEFC41889%2E1%7C.for.24192-25692.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24192-25692.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24192-25692.gi%7C284088224%7Cgb%7CEFC41889%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091020%7Cgb%7CEFC44669%2E1%7C.for.24189-25689.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25689.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25689.gi%7C284091020%7Cgb%7CEFC44669%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096438%7Cgb%7CEFC50066%2E1%7C.for.23972-25725.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.23972-25725.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.23972-25725.gi%7C284096438%7Cgb%7CEFC50066%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093840%7Cgb%7CEFC47476%2E1%7C.for.24189-25344.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25344.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25344.gi%7C284093840%7Cgb%7CEFC47476%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088894%7Cgb%7CEFC42555%2E1%7C.for.24180-25692.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24180-25692.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24180-25692.gi%7C284088894%7Cgb%7CEFC42555%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091589%7Cgb%7CEFC45235%2E1%7C.for.24189-25677.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25677.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25677.gi%7C284091589%7Cgb%7CEFC45235%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093839%7Cgb%7CEFC47475%2E1%7C.for.24467-25479.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24467-25479.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24467-25479.gi%7C284093839%7Cgb%7CEFC47475%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090020%7Cgb%7CEFC43674%2E1%7C.for.24189-25677.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25677.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25677.gi%7C284090020%7Cgb%7CEFC43674%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089972%7Cgb%7CEFC43626%2E1%7C.for.28936-30463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.28936-30463.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.28936-30463.gi%7C284089972%7Cgb%7CEFC43626%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086548%7Cgb%7CEFC40224%2E1%7C.for.30291-32151.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.30291-32151.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.30291-32151.gi%7C284086548%7Cgb%7CEFC40224%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087802%7Cgb%7CEFC41469%2E1%7C.for.37878-39943.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.37878-39943.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.37878-39943.gi%7C284087802%7Cgb%7CEFC41469%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085561%7Cgb%7CEFC39244%2E1%7C.for.37914-39934.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.37914-39934.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.37914-39934.gi%7C284085561%7Cgb%7CEFC39244%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087851%7Cgb%7CEFC41518%2E1%7C.for.40044-43012.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.40044-43012.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.40044-43012.gi%7C284087851%7Cgb%7CEFC41518%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097222%7Cgb%7CEFC50849%2E1%7C.for.42455-43652.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.42455-43652.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.42455-43652.gi%7C284097222%7Cgb%7CEFC50849%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086625%7Cgb%7CEFC40300%2E1%7C.for.43749-45472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43749-45472.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43749-45472.gi%7C284086625%7Cgb%7CEFC40300%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083255%7Cgb%7CEFC36960%2E1%7C.for.43749-45616.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43749-45616.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43749-45616.gi%7C284083255%7Cgb%7CEFC36960%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086635%7Cgb%7CEFC40310%2E1%7C.for.43749-45616.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43749-45616.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43749-45616.gi%7C284086635%7Cgb%7CEFC40310%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084290%7Cgb%7CEFC37984%2E1%7C.for.43749-45412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43749-45412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43749-45412.gi%7C284084290%7Cgb%7CEFC37984%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089955%7Cgb%7CEFC43609%2E1%7C.for.45082-47466.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.45082-47466.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.45082-47466.gi%7C284089955%7Cgb%7CEFC43609%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089829%7Cgb%7CEFC43484%2E1%7C.for.48907-51063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.48907-51063.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.48907-51063.gi%7C284089829%7Cgb%7CEFC43484%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089812%7Cgb%7CEFC43467%2E1%7C.for.50900-51968.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.50900-51968.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.50900-51968.gi%7C284089812%7Cgb%7CEFC43467%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088559%7Cgb%7CEFC42222%2E1%7C.for.54523-58496.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.54523-58496.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.54523-58496.gi%7C284088559%7Cgb%7CEFC42222%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083620%7Cgb%7CEFC37321%2E1%7C.for.54475-58466.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.54475-58466.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.54475-58466.gi%7C284083620%7Cgb%7CEFC37321%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095187%7Cgb%7CEFC48819%2E1%7C.for.58139-59411.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58139-59411.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58139-59411.gi%7C284095187%7Cgb%7CEFC48819%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088013%7Cgb%7CEFC41679%2E1%7C.for.58145-59459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58145-59459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58145-59459.gi%7C284088013%7Cgb%7CEFC41679%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088877%7Cgb%7CEFC42538%2E1%7C.for.58079-59411.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58079-59411.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58079-59411.gi%7C284088877%7Cgb%7CEFC42538%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097251%7Cgb%7CEFC50878%2E1%7C.for.58136-59432.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58136-59432.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58136-59432.gi%7C284097251%7Cgb%7CEFC50878%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096640%7Cgb%7CEFC50267%2E1%7C.for.58139-59423.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58139-59423.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58139-59423.gi%7C284096640%7Cgb%7CEFC50267%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095576%7Cgb%7CEFC49206%2E1%7C.for.58136-59444.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58136-59444.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58136-59444.gi%7C284095576%7Cgb%7CEFC49206%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083114%7Cgb%7CEFC36821%2E1%7C.for.62510-64790.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.62510-64790.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.62510-64790.gi%7C284083114%7Cgb%7CEFC36821%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091204%7Cgb%7CEFC44852%2E1%7C.for.66491-67593.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.66491-67593.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.66491-67593.gi%7C284091204%7Cgb%7CEFC44852%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089467%7Cgb%7CEFC43124%2E1%7C.for.70944-72178.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.70944-72178.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.70944-72178.gi%7C284089467%7Cgb%7CEFC43124%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091753%7Cgb%7CEFC45398%2E1%7C.for.78704-80046.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.78704-80046.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.78704-80046.gi%7C284091753%7Cgb%7CEFC45398%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094302%7Cgb%7CEFC47936%2E1%7C.for.78710-80052.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.78710-80052.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.78710-80052.gi%7C284094302%7Cgb%7CEFC47936%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089980%7Cgb%7CEFC43634%2E1%7C.for.78704-80046.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.78704-80046.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.78704-80046.gi%7C284089980%7Cgb%7CEFC43634%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083305%7Cgb%7CEFC37010%2E1%7C.for.90489-92214.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90489-92214.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90489-92214.gi%7C284083305%7Cgb%7CEFC37010%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086189%7Cgb%7CEFC39867%2E1%7C.for.90489-92214.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90489-92214.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90489-92214.gi%7C284086189%7Cgb%7CEFC39867%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082382%7Cgb%7CEFC36106%2E1%7C.for.90489-92214.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90489-92214.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90489-92214.gi%7C284082382%7Cgb%7CEFC36106%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:18 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:20 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 2 ...processing 1 of 2 total clusters:20 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.1925-4163.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.1925-4163.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.1925-4163.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.8698-9606.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.8698-9606.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.8698-9606.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.14145-15107.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.14145-15107.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.14145-15107.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.15856-20160.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.15856-20160.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.15856-20160.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.20920-22441.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.20920-22441.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.20920-22441.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.24226-26714.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.24226-26714.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.24226-26714.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.29135-30263.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.29135-30263.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.29135-30263.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.40243-43899.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.40243-43899.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.40243-43899.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.54674-59244.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.54674-59244.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.54674-59244.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.65794-66900.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.65794-66900.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.65794-66900.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.78887-80447.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.78887-80447.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.78887-80447.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.88021-89770.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.88021-89770.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.88021-89770.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.90909-91875.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.90909-91875.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.90909-91875.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.6570-7836.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.6570-7836.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.6570-7836.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.13029-13693.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.13029-13693.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.13029-13693.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.22867-23866.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.22867-23866.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.22867-23866.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.26460-28106.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.26460-28106.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.26460-28106.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.30472-31951.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.30472-31951.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.30472-31951.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.31983-35892.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.31983-35892.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.31983-35892.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.37681-39774.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.37681-39774.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.37681-39774.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.43948-47698.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.43948-47698.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.43948-47698.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.49106-50961.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.49106-50961.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.49106-50961.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.51024-51988.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.51024-51988.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.51024-51988.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.62656-64590.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.62656-64590.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.62656-64590.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.71143-71978.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.71143-71978.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.71143-71978.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.73745-75386.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.73745-75386.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.73745-75386.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.80064-81014.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.80064-81014.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.80064-81014.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.82536-85102.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.82536-85102.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.82536-85102.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.89475-90484.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.89475-90484.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.89475-90484.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.90688-92014.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.90688-92014.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.90688-92014.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C15 Length: 88282 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:5 current j:0 j_size:5 current j:1 j_size:5 current j:2 j_size:5 current j:3 j_size:5 current j:4 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C15.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C15.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:6 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13711%7C1108770679036.for.1-1127.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.1-1127.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.1-1127.Ar_EST_120301b_c13711%7C1108770679036.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10644%7Cclaudia-husseneder_plate25-d09.for.3186-4275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.3186-4275.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.3186-4275.Ar_EST_120301b_c10644%7Cclaudia-husseneder_plate25-d09.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7062%7Cprotein.for.9348-10762.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9348-10762.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9348-10762.Ar_EST_120301b_rep_c7062%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20489%7Cprotein.for.9348-10472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9348-10472.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9348-10472.Ar_EST_120301b_rep_c20489%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19779%7Cprotein.for.9460-10762.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9460-10762.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9460-10762.Ar_EST_120301b_rep_c19779%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6989%7Cprotein.for.9353-10747.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9353-10747.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9353-10747.Ar_EST_120301b_rep_c6989%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7201%7Cprotein.for.9452-10750.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9452-10750.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9452-10750.Ar_EST_120301b_rep_c7201%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20535%7C40s.for.9635-10758.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9635-10758.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9635-10758.Ar_EST_120301b_rep_c20535%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c847%7Csphingomyelin.for.16096-17482.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.16096-17482.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.16096-17482.Ar_EST_120301b_c847%7Csphingomyelin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15302%7Camp-dependent.for.17102-18099.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.17102-18099.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.17102-18099.Ar_EST_120301b_c15302%7Camp-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8900%7Cpropionate--.for.17355-18785.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.17355-18785.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.17355-18785.Ar_EST_120301b_c8900%7Cpropionate--.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12453%7Cras-related.for.18577-19838.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.18577-19838.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.18577-19838.Ar_EST_120301b_c12453%7Cras-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c101%7Chormone.for.20132-22409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.20132-22409.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.20132-22409.Ar_EST_120301b_c101%7Chormone.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3533%7Clipase.for.21106-23324.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.21106-23324.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.21106-23324.Ar_EST_120301b_c3533%7Clipase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10006%7Cau284314.for.23945-25162.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.23945-25162.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.23945-25162.Ar_EST_120301b_rep_c10006%7Cau284314.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3682%7Cnegative.for.24459-26498.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.24459-26498.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.24459-26498.Ar_EST_120301b_c3682%7Cnegative.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig488%7Cv-type.for.25755-27402.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25755-27402.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25755-27402.120301b_Contig488%7Cv-type.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19184%7Cat3g58730-like.for.25880-27038.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25880-27038.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25880-27038.Ar_EST_120301b_c19184%7Cat3g58730-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12067%7Cfn735362.for.27398-28751.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.27398-28751.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.27398-28751.Ar_EST_120301b_c12067%7Cfn735362.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4543%7Cv-type.for.28132-30143.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.28132-30143.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.28132-30143.Ar_EST_120301b_rep_c4543%7Cv-type.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6117%7Cv-type.for.28143-30220.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.28143-30220.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.28143-30220.Ar_EST_120301b_rep_c6117%7Cv-type.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6452%7Cv-atpase.for.28152-29423.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.28152-29423.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.28152-29423.Ar_EST_120301b_rep_c6452%7Cv-atpase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16840%7Cstructural.for.29632-31068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.29632-31068.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.29632-31068.Ar_EST_120301b_c16840%7Cstructural.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10412%7Cmyosin.for.30668-32164.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.30668-32164.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.30668-32164.Ar_EST_120301b_c10412%7Cmyosin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9051%7Cpoly.for.36033-37417.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.36033-37417.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.36033-37417.Ar_EST_120301b_c9051%7Cpoly.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19738%7Cpoly.for.35801-37206.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.35801-37206.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.35801-37206.Ar_EST_120301b_c19738%7Cpoly.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17368%7C5348_b09_d18z_077.for.36714-37988.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.36714-37988.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.36714-37988.Ar_EST_120301b_c17368%7C5348_b09_d18z_077.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17502%7Csperm.for.44875-46147.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.44875-46147.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.44875-46147.Ar_EST_120301b_c17502%7Csperm.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10104%7Cnbero1ch_t3_003_f01_28apr2006_005.for.46523-47950.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.46523-47950.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.46523-47950.Ar_EST_120301b_c10104%7Cnbero1ch_t3_003_f01_28apr2006_005.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15477%7C010511olea005840ht.for.47761-48883.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.47761-48883.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.47761-48883.Ar_EST_120301b_c15477%7C010511olea005840ht.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12496%7Cmitotic.for.48559-49821.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.48559-49821.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.48559-49821.Ar_EST_120301b_c12496%7Cmitotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig631%7Cabc.for.49870-51710.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.49870-51710.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.49870-51710.120301b_Contig631%7Cabc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig362%7Cabc.for.50804-52767.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.50804-52767.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.50804-52767.120301b_Contig362%7Cabc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig591%7Cactin.for.52012-54049.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52012-54049.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52012-54049.120301b_Contig591%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19773%7Cactin.for.52309-53610.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52309-53610.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52309-53610.Ar_EST_120301b_c19773%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14966%7Cras-related.for.58383-59584.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.58383-59584.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.58383-59584.Ar_EST_120301b_rep_c14966%7Cras-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14539%7Chydra.for.65120-66122.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.65120-66122.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.65120-66122.Ar_EST_120301b_c14539%7Chydra.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13213%7Cintron-binding.for.68211-69663.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.68211-69663.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.68211-69663.Ar_EST_120301b_c13213%7Cintron-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2756%7Csen1p.for.68632-69999.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.68632-69999.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.68632-69999.Ar_EST_120301b_c2756%7Csen1p.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10437%7Cintron-binding.for.69298-70670.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.69298-70670.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.69298-70670.Ar_EST_120301b_c10437%7Cintron-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15450%7Cintron-binding.for.70035-71377.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.70035-71377.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.70035-71377.Ar_EST_120301b_c15450%7Cintron-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1912%7Cpatatin.for.71801-73209.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.71801-73209.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.71801-73209.Ar_EST_120301b_c1912%7Cpatatin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10248%7Cfp871808.for.72440-73995.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.72440-73995.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.72440-73995.Ar_EST_120301b_c10248%7Cfp871808.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11840%7Cmembrane.for.73620-75243.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.73620-75243.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.73620-75243.Ar_EST_120301b_c11840%7Cmembrane.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14999%7Cpredicted.for.81251-82657.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.81251-82657.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.81251-82657.Ar_EST_120301b_c14999%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8376%7Cperoxisomal.for.82450-83986.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.82450-83986.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.82450-83986.Ar_EST_120301b_c8376%7Cperoxisomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19284%7Cagencourt_61881600.for.82251-83486.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.82251-83486.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.82251-83486.Ar_EST_120301b_c19284%7Cagencourt_61881600.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15193%7Cabc.for.84208-85171.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84208-85171.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84208-85171.Ar_EST_120301b_c15193%7Cabc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14003%7Cabc.for.85483-86603.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.85483-86603.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.85483-86603.Ar_EST_120301b_c14003%7Cabc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16443%7Caplysia.for.87251-88282.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.87251-88282.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.87251-88282.Ar_EST_120301b_c16443%7Caplysia.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:44 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:40 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:44 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:50 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:43 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:53 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:60 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:58 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:43 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:36 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093316%7Cgb%7CEFC46954%2E1%7C.for.9415-10717.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9415-10717.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9415-10717.gi%7C284093316%7Cgb%7CEFC46954%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091441%7Cgb%7CEFC45088%2E1%7C.for.10193-12362.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.10193-12362.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.10193-12362.gi%7C284091441%7Cgb%7CEFC45088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091342%7Cgb%7CEFC44989%2E1%7C.for.11672-13489.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.11672-13489.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.11672-13489.gi%7C284091342%7Cgb%7CEFC44989%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088481%7Cgb%7CEFC42144%2E1%7C.for.17102-18870.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.17102-18870.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.17102-18870.gi%7C284088481%7Cgb%7CEFC42144%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084487%7Cgb%7CEFC38179%2E1%7C.for.25758-27251.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25758-27251.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25758-27251.gi%7C284084487%7Cgb%7CEFC38179%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090397%7Cgb%7CEFC44049%2E1%7C.for.25761-27182.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25761-27182.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25761-27182.gi%7C284090397%7Cgb%7CEFC44049%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083009%7Cgb%7CEFC36717%2E1%7C.for.25761-27230.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25761-27230.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25761-27230.gi%7C284083009%7Cgb%7CEFC36717%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092236%7Cgb%7CEFC45879%2E1%7C.for.28469-30195.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.28469-30195.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.28469-30195.gi%7C284092236%7Cgb%7CEFC45879%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096677%7Cgb%7CEFC50304%2E1%7C.for.29853-30916.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.29853-30916.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.29853-30916.gi%7C284096677%7Cgb%7CEFC50304%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091339%7Cgb%7CEFC44986%2E1%7C.for.34890-37451.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.34890-37451.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.34890-37451.gi%7C284091339%7Cgb%7CEFC44986%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089040%7Cgb%7CEFC42700%2E1%7C.for.49909-52718.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.49909-52718.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.49909-52718.gi%7C284089040%7Cgb%7CEFC42700%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082540%7Cgb%7CEFC36256%2E1%7C.for.50258-52748.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.50258-52748.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.50258-52748.gi%7C284082540%7Cgb%7CEFC36256%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089317%7Cgb%7CEFC42975%2E1%7C.for.50602-52748.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.50602-52748.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.50602-52748.gi%7C284089317%7Cgb%7CEFC42975%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093022%7Cgb%7CEFC46662%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284093022%7Cgb%7CEFC46662%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084913%7Cgb%7CEFC38601%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284084913%7Cgb%7CEFC38601%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091907%7Cgb%7CEFC45551%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284091907%7Cgb%7CEFC45551%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081216%7Cgb%7CEFC35341%2E1%7C.for.52748-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52748-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52748-54057.gi%7C284081216%7Cgb%7CEFC35341%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094255%7Cgb%7CEFC47890%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284094255%7Cgb%7CEFC47890%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085698%7Cgb%7CEFC39380%2E1%7C.for.52271-54060.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52271-54060.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52271-54060.gi%7C284085698%7Cgb%7CEFC39380%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082818%7Cgb%7CEFC36529%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284082818%7Cgb%7CEFC36529%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092206%7Cgb%7CEFC45849%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284092206%7Cgb%7CEFC45849%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093050%7Cgb%7CEFC46689%2E1%7C.for.52328-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52328-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52328-54057.gi%7C284093050%7Cgb%7CEFC46689%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081499%7Cgb%7CEFC35479%2E1%7C.for.52325-53676.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52325-53676.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52325-53676.gi%7C284081499%7Cgb%7CEFC35479%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090387%7Cgb%7CEFC44039%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284090387%7Cgb%7CEFC44039%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081169%7Cgb%7CEFC35319%2E1%7C.for.52331-53442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52331-53442.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52331-53442.gi%7C284081169%7Cgb%7CEFC35319%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091080%7Cgb%7CEFC44728%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284091080%7Cgb%7CEFC44728%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C7140539%7Cgb%7CAAF37002%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C7140539%7Cgb%7CAAF37002%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C41016928%7Csp%7CQ9NJV4%2E1%7CACT1_NAEGR.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C41016928%7Csp%7CQ9NJV4%2E1%7CACT1_NAEGR.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089912%7Cgb%7CEFC43567%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284089912%7Cgb%7CEFC43567%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091169%7Cgb%7CEFC44817%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284091169%7Cgb%7CEFC44817%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089027%7Cgb%7CEFC42687%2E1%7C.for.52334-54063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54063.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54063.gi%7C284089027%7Cgb%7CEFC42687%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094182%7Cgb%7CEFC47817%2E1%7C.for.52331-53367.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52331-53367.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52331-53367.gi%7C284094182%7Cgb%7CEFC47817%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092093%7Cgb%7CEFC45736%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284092093%7Cgb%7CEFC45736%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083654%7Cgb%7CEFC37355%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284083654%7Cgb%7CEFC37355%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096006%7Cgb%7CEFC49635%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284096006%7Cgb%7CEFC49635%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093025%7Cgb%7CEFC46665%2E1%7C.for.52556-54066.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52556-54066.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52556-54066.gi%7C284093025%7Cgb%7CEFC46665%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090925%7Cgb%7CEFC44574%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284090925%7Cgb%7CEFC44574%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086629%7Cgb%7CEFC40304%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284086629%7Cgb%7CEFC40304%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095925%7Cgb%7CEFC49554%2E1%7C.for.52331-54066.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52331-54066.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52331-54066.gi%7C284095925%7Cgb%7CEFC49554%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084108%7Cgb%7CEFC37804%2E1%7C.for.52721-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52721-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52721-54057.gi%7C284084108%7Cgb%7CEFC37804%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082060%7Cgb%7CEFC35846%2E1%7C.for.58454-59577.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.58454-59577.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.58454-59577.gi%7C284082060%7Cgb%7CEFC35846%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082068%7Cgb%7CEFC35853%2E1%7C.for.61526-64275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64275.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64275.gi%7C284082068%7Cgb%7CEFC35853%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084087%7Cgb%7CEFC37783%2E1%7C.for.61526-64254.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64254.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64254.gi%7C284084087%7Cgb%7CEFC37783%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089082%7Cgb%7CEFC42742%2E1%7C.for.61514-64407.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61514-64407.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61514-64407.gi%7C284089082%7Cgb%7CEFC42742%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088982%7Cgb%7CEFC42642%2E1%7C.for.61526-64446.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64446.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64446.gi%7C284088982%7Cgb%7CEFC42642%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082474%7Cgb%7CEFC36192%2E1%7C.for.61526-64428.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.gi%7C284082474%7Cgb%7CEFC36192%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082092%7Cgb%7CEFC35872%2E1%7C.for.61481-64428.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61481-64428.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61481-64428.gi%7C284082092%7Cgb%7CEFC35872%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085337%7Cgb%7CEFC39022%2E1%7C.for.61526-64410.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64410.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64410.gi%7C284085337%7Cgb%7CEFC39022%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083266%7Cgb%7CEFC36971%2E1%7C.for.61487-64431.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61487-64431.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61487-64431.gi%7C284083266%7Cgb%7CEFC36971%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093774%7Cgb%7CEFC47410%2E1%7C.for.61526-64284.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64284.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64284.gi%7C284093774%7Cgb%7CEFC47410%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089683%7Cgb%7CEFC43339%2E1%7C.for.61526-64428.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.gi%7C284089683%7Cgb%7CEFC43339%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081057%7Cgb%7CEFC35279%2E1%7C.for.61514-64422.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61514-64422.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61514-64422.gi%7C284081057%7Cgb%7CEFC35279%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082440%7Cgb%7CEFC36159%2E1%7C.for.61592-64470.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61592-64470.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61592-64470.gi%7C284082440%7Cgb%7CEFC36159%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082314%7Cgb%7CEFC36048%2E1%7C.for.61526-64428.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.gi%7C284082314%7Cgb%7CEFC36048%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081028%7Cgb%7CEFC35268%2E1%7C.for.61526-64428.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.gi%7C284081028%7Cgb%7CEFC35268%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093921%7Cgb%7CEFC47557%2E1%7C.for.61526-64428.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.gi%7C284093921%7Cgb%7CEFC47557%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082136%7Cgb%7CEFC35906%2E1%7C.for.61526-64428.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.gi%7C284082136%7Cgb%7CEFC35906%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084171%7Cgb%7CEFC37866%2E1%7C.for.61526-64467.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64467.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64467.gi%7C284084171%7Cgb%7CEFC37866%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080810%7Cgb%7CEFC35195%2E1%7C.for.61640-64254.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61640-64254.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61640-64254.gi%7C284080810%7Cgb%7CEFC35195%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096409%7Cgb%7CEFC50037%2E1%7C.for.81597-82880.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.81597-82880.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.81597-82880.gi%7C284096409%7Cgb%7CEFC50037%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082808%7Cgb%7CEFC36519%2E1%7C.for.82936-84050.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.82936-84050.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.82936-84050.gi%7C284082808%7Cgb%7CEFC36519%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089213%7Cgb%7CEFC42872%2E1%7C.for.83354-88282.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.83354-88282.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.83354-88282.gi%7C284089213%7Cgb%7CEFC42872%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096078%7Cgb%7CEFC49707%2E1%7C.for.84602-86190.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84602-86190.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84602-86190.gi%7C284096078%7Cgb%7CEFC49707%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096910%7Cgb%7CEFC50537%2E1%7C.for.84545-86139.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84545-86139.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84545-86139.gi%7C284096910%7Cgb%7CEFC50537%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088030%7Cgb%7CEFC41696%2E1%7C.for.83441-88282.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.83441-88282.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.83441-88282.gi%7C284088030%7Cgb%7CEFC41696%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094270%7Cgb%7CEFC47905%2E1%7C.for.84614-86178.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84614-86178.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84614-86178.gi%7C284094270%7Cgb%7CEFC47905%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094672%7Cgb%7CEFC48305%2E1%7C.for.84695-86136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84695-86136.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84695-86136.gi%7C284094672%7Cgb%7CEFC48305%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094721%7Cgb%7CEFC48354%2E1%7C.for.84614-86181.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84614-86181.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84614-86181.gi%7C284094721%7Cgb%7CEFC48354%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 27 ...processing 1 of 27 ...processing 2 of 27 ...processing 3 of 27 ...processing 4 of 27 ...processing 5 of 27 ...processing 6 of 27 ...processing 7 of 27 ...processing 8 of 27 ...processing 9 of 27 ...processing 10 of 27 ...processing 11 of 27 ...processing 12 of 27 ...processing 13 of 27 ...processing 14 of 27 ...processing 15 of 27 ...processing 16 of 27 ...processing 17 of 27 ...processing 18 of 27 ...processing 19 of 27 ...processing 20 of 27 ...processing 21 of 27 ...processing 22 of 27 ...processing 23 of 27 ...processing 24 of 27 ...processing 25 of 27 ...processing 26 of 27 total clusters:12 now processing 0 ...processing 0 of 11 ...processing 1 of 11 ...processing 2 of 11 ...processing 3 of 11 ...processing 4 of 11 ...processing 5 of 11 ...processing 6 of 11 ...processing 7 of 11 ...processing 8 of 11 ...processing 9 of 11 ...processing 10 of 11 total clusters:12 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:12 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 26 ...processing 1 of 26 ...processing 2 of 26 ...processing 3 of 26 ...processing 4 of 26 ...processing 5 of 26 ...processing 6 of 26 ...processing 7 of 26 ...processing 8 of 26 ...processing 9 of 26 ...processing 10 of 26 ...processing 11 of 26 ...processing 12 of 26 ...processing 13 of 26 ...processing 14 of 26 ...processing 15 of 26 ...processing 16 of 26 ...processing 17 of 26 ...processing 18 of 26 ...processing 19 of 26 ...processing 20 of 26 ...processing 21 of 26 ...processing 22 of 26 ...processing 23 of 26 ...processing 24 of 26 ...processing 25 of 26 total clusters:12 now processing 0 ...processing 0 of 20 ...processing 1 of 20 ...processing 2 of 20 ...processing 3 of 20 ...processing 4 of 20 ...processing 5 of 20 ...processing 6 of 20 ...processing 7 of 20 ...processing 8 of 20 ...processing 9 of 20 ...processing 10 of 20 ...processing 11 of 20 ...processing 12 of 20 ...processing 13 of 20 ...processing 14 of 20 ...processing 15 of 20 ...processing 16 of 20 ...processing 17 of 20 ...processing 18 of 20 ...processing 19 of 20 ...trimming the rest total clusters:12 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:19 now processing 0 total clusters:19 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:19 now processing 0 total clusters:19 now processing 0 total clusters:19 now processing 0 total clusters:19 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:19 now processing 0 total clusters:19 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:19 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:19 now processing 0 total clusters:19 now processing 0 total clusters:19 now processing 0 total clusters:19 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:19 now processing 0 total clusters:19 now processing 0 total clusters:19 now processing 0 total clusters:19 now processing 0 total clusters:19 now processing 0 total clusters:19 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:17 now processing 0 ...processing 0 of 20 ...processing 1 of 20 ...processing 2 of 20 ...processing 3 of 20 ...processing 4 of 20 ...processing 5 of 20 ...processing 6 of 20 ...processing 7 of 20 ...processing 8 of 20 ...processing 9 of 20 ...processing 10 of 20 ...processing 11 of 20 ...processing 12 of 20 ...processing 13 of 20 ...processing 14 of 20 ...processing 15 of 20 ...processing 16 of 20 ...processing 17 of 20 ...processing 18 of 20 ...processing 19 of 20 ...trimming the rest ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.65-927.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.65-927.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.65-927.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.10392-12162.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.10392-12162.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.10392-12162.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.16295-17282.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.16295-17282.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.16295-17282.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.18776-19638.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.18776-19638.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.18776-19638.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.24658-27202.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.24658-27202.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.24658-27202.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.27597-30020.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.27597-30020.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.27597-30020.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.35089-37251.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.35089-37251.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.35089-37251.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.45074-45947.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.45074-45947.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.45074-45947.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.46722-47750.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.46722-47750.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.46722-47750.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.48758-49621.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.48758-49621.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.48758-49621.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.50069-52569.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.50069-52569.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.50069-52569.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.58572-59384.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.58572-59384.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.58572-59384.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.72000-75043.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.72000-75043.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.72000-75043.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.81796-83836.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.81796-83836.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.81796-83836.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.9547-10562.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.9547-10562.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.9547-10562.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.11871-13289.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.11871-13289.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.11871-13289.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.17554-18622.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.17554-18622.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.17554-18622.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.20331-23124.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.20331-23124.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.20331-23124.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.29831-31964.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.29831-31964.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.29831-31964.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.36913-37788.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.36913-37788.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.36913-37788.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.47960-48712.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.47960-48712.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.47960-48712.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.52211-53875.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.52211-53875.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.52211-53875.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.61680-64294.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.61680-64294.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.61680-64294.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.68410-71177.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.68410-71177.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.68410-71177.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.81450-82457.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.81450-82457.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.81450-82457.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.83553-88154.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.83553-88154.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.83553-88154.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C16 Length: 52806 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:1 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C16.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C16.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig74%7Cras.for.4626-7621.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.4626-7621.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.4626-7621.120301b_Contig74%7Cras.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16859%7Cras.for.2491-3652.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.2491-3652.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.2491-3652.Ar_EST_120301b_c16859%7Cras.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1186%7Csecreted.for.2145-4070.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.2145-4070.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.2145-4070.120301b_Contig1186%7Csecreted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20200%7Cg.for.5582-6832.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.5582-6832.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.5582-6832.Ar_EST_120301b_rep_c20200%7Cg.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7704%7C40s.for.2996-5442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.2996-5442.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.2996-5442.Ar_EST_120301b_c7704%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14467%7Ccu605174.for.8339-9523.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.8339-9523.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.8339-9523.Ar_EST_120301b_rep_c14467%7Ccu605174.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7171%7Cly_yit_dp1235.for.8342-9199.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.8342-9199.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.8342-9199.Ar_EST_120301b_rep_c7171%7Cly_yit_dp1235.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16260%7Cmethyltransferase.for.11915-13043.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.11915-13043.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.11915-13043.Ar_EST_120301b_c16260%7Cmethyltransferase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c612%7C3.for.13756-15898.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.13756-15898.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.13756-15898.Ar_EST_120301b_c612%7C3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14163%7Cheterotrimeric.for.14536-15940.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14536-15940.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14536-15940.Ar_EST_120301b_c14163%7Cheterotrimeric.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1012%7Cras-related.for.16093-17594.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.16093-17594.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.16093-17594.120301b_Contig1012%7Cras-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9994%7CFP067752.for.20020-21546.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.20020-21546.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.20020-21546.Ar_EST_120301b_c9994%7CFP067752.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19755%7C---NA---.for.19886-21213.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.19886-21213.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.19886-21213.Ar_EST_120301b_c19755%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1652%7Cpredicted.for.22962-24406.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.22962-24406.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.22962-24406.Ar_EST_120301b_c1652%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12976%7Cdym_chick.for.24127-25530.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.24127-25530.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.24127-25530.Ar_EST_120301b_c12976%7Cdym_chick.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4302%7Cnad-dependent.for.27610-29630.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.27610-29630.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.27610-29630.Ar_EST_120301b_rep_c4302%7Cnad-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4959%7Cnad-dependent.for.27638-29648.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.27638-29648.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.27638-29648.Ar_EST_120301b_rep_c4959%7Cnad-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13941%7Cnucleotide.for.28457-29556.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.28457-29556.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.28457-29556.Ar_EST_120301b_rep_c13941%7Cnucleotide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14530%7Chypothetical.for.29417-30831.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.29417-30831.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.29417-30831.Ar_EST_120301b_c14530%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1221%7Cgateway.for.31131-32485.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.31131-32485.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.31131-32485.Ar_EST_120301b_c1221%7Cgateway.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2400%7Ctransmembrane.for.31863-33502.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.31863-33502.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.31863-33502.Ar_EST_120301b_c2400%7Ctransmembrane.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16743%7Catp.for.36527-37979.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.36527-37979.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.36527-37979.Ar_EST_120301b_c16743%7Catp.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3646%7Cisoform.for.35541-37378.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.35541-37378.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.35541-37378.Ar_EST_120301b_c3646%7Cisoform.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16709%7C---NA---.for.38655-40235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.38655-40235.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.38655-40235.Ar_EST_120301b_c16709%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10548%7Cpopulus.for.38111-39685.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.38111-39685.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.38111-39685.Ar_EST_120301b_c10548%7Cpopulus.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12154%7Ctransposase.for.41740-43156.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.41740-43156.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.41740-43156.Ar_EST_120301b_c12154%7Ctransposase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13040%7Ccnsn01-f-004961-501.for.44089-45039.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.44089-45039.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.44089-45039.Ar_EST_120301b_c13040%7Ccnsn01-f-004961-501.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13845%7C---NA---.for.49598-50912.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.49598-50912.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.49598-50912.Ar_EST_120301b_c13845%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13073%7Cccashart06b08r.for.50532-51611.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.50532-51611.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.50532-51611.Ar_EST_120301b_c13073%7Cccashart06b08r.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13711%7C1108770679036.for.51968-52806.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.51968-52806.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.51968-52806.Ar_EST_120301b_c13711%7C1108770679036.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:6 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:12 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:5 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:7 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:6 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:6 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:9 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:6 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:11 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:6 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081967%7Cgb%7CEFC35778%2E1%7C.for.6355-7489.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.6355-7489.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.6355-7489.gi%7C284081967%7Cgb%7CEFC35778%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092652%7Cgb%7CEFC46293%2E1%7C.for.14705-16123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14705-16123.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14705-16123.gi%7C284092652%7Cgb%7CEFC46293%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084915%7Cgb%7CEFC38603%2E1%7C.for.14639-16114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14639-16114.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14639-16114.gi%7C284084915%7Cgb%7CEFC38603%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084712%7Cgb%7CEFC38402%2E1%7C.for.14705-16123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14705-16123.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14705-16123.gi%7C284084712%7Cgb%7CEFC38402%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090770%7Cgb%7CEFC44420%2E1%7C.for.14678-16123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14678-16123.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14678-16123.gi%7C284090770%7Cgb%7CEFC44420%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083518%7Cgb%7CEFC37220%2E1%7C.for.14693-16123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14693-16123.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14693-16123.gi%7C284083518%7Cgb%7CEFC37220%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095980%7Cgb%7CEFC49609%2E1%7C.for.14738-16123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14738-16123.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14738-16123.gi%7C284095980%7Cgb%7CEFC49609%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091782%7Cgb%7CEFC45427%2E1%7C.for.14705-15853.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14705-15853.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14705-15853.gi%7C284091782%7Cgb%7CEFC45427%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085503%7Cgb%7CEFC39186%2E1%7C.for.14732-16123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14732-16123.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14732-16123.gi%7C284085503%7Cgb%7CEFC39186%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093388%7Cgb%7CEFC47026%2E1%7C.for.14798-15723.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14798-15723.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14798-15723.gi%7C284093388%7Cgb%7CEFC47026%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095344%7Cgb%7CEFC48975%2E1%7C.for.14705-16105.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14705-16105.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14705-16105.gi%7C284095344%7Cgb%7CEFC48975%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095754%7Cgb%7CEFC49384%2E1%7C.for.14693-16105.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14693-16105.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14693-16105.gi%7C284095754%7Cgb%7CEFC49384%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084832%7Cgb%7CEFC38521%2E1%7C.for.16083-17862.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.16083-17862.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.16083-17862.gi%7C284084832%7Cgb%7CEFC38521%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096643%7Cgb%7CEFC50270%2E1%7C.for.16077-17862.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.16077-17862.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.16077-17862.gi%7C284096643%7Cgb%7CEFC50270%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097000%7Cgb%7CEFC50627%2E1%7C.for.17195-19077.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.17195-19077.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.17195-19077.gi%7C284097000%7Cgb%7CEFC50627%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095112%7Cgb%7CEFC48744%2E1%7C.for.25157-28242.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.25157-28242.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.25157-28242.gi%7C284095112%7Cgb%7CEFC48744%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091376%7Cgb%7CEFC45023%2E1%7C.for.27629-29588.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.27629-29588.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.27629-29588.gi%7C284091376%7Cgb%7CEFC45023%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:5 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:5 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:5 now processing 0 total clusters:5 now processing 0 total clusters:5 now processing 0 in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:4 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:4 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:4 now processing 0 total clusters:4 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:10 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:10 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:10 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.8491-9323.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.8491-9323.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.8491-9323.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.20085-21013.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.20085-21013.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.20085-21013.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.23073-25330.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.23073-25330.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.23073-25330.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.29616-32285.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.29616-32285.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.29616-32285.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.35740-37784.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.35740-37784.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.35740-37784.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.38304-40035.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.38304-40035.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.38304-40035.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.52167-52806.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.52167-52806.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.52167-52806.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.2344-7421.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.2344-7421.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.2344-7421.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.14735-15923.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.14735-15923.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.14735-15923.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.16276-18877.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.16276-18877.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.16276-18877.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.25356-29430.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.25356-29430.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.25356-29430.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.32062-33302.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.32062-33302.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.32062-33302.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.41939-42958.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.41939-42958.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.41939-42958.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.44288-44861.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.44288-44861.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.44288-44861.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.49797-50712.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.49797-50712.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.49797-50712.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C17 Length: 92022 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:6 current j:0 j_size:6 current j:1 j_size:6 current j:2 j_size:6 current j:3 j_size:6 current j:4 j_size:6 current j:5 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C17.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C17.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14841%7C---NA---.for.1416-2440.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.1416-2440.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.1416-2440.Ar_EST_120301b_c14841%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12481%7Cpt11-c2-300-003-e01-.for.2068-3358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.2068-3358.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.2068-3358.Ar_EST_120301b_c12481%7Cpt11-c2-300-003-e01-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c152%7Cdisulfide.for.1875-3275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.1875-3275.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.1875-3275.Ar_EST_120301b_c152%7Cdisulfide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12224%7Cproteasome-associated.for.2749-4281.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.2749-4281.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.2749-4281.Ar_EST_120301b_c12224%7Cproteasome-associated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3338%7Cproteasome-associated.for.3465-5694.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.3465-5694.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.3465-5694.Ar_EST_120301b_c3338%7Cproteasome-associated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16010%7Cproteasome-associated.for.5217-6552.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.5217-6552.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.5217-6552.Ar_EST_120301b_c16010%7Cproteasome-associated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14875.for.5785-6871.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.5785-6871.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.5785-6871.Ar_EST_120301b_c14875.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18129%7Cheat.for.7223-8542.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.7223-8542.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.7223-8542.Ar_EST_120301b_c18129%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15944%7C603773189f1.for.10823-11971.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.10823-11971.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.10823-11971.Ar_EST_120301b_c15944%7C603773189f1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11028%7Cauxin.for.11347-13098.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.11347-13098.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.11347-13098.Ar_EST_120301b_c11028%7Cauxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3067%7Crna-binding.for.12713-14508.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.12713-14508.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.12713-14508.Ar_EST_120301b_c3067%7Crna-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15013%7Cnacnu32to.for.16800-18175.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.16800-18175.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.16800-18175.Ar_EST_120301b_c15013%7Cnacnu32to.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3173%7Cconserved.for.16013-17915.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.16013-17915.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.16013-17915.Ar_EST_120301b_c3173%7Cconserved.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8941%7Cmrna-decapping.for.21273-22620.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.21273-22620.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.21273-22620.Ar_EST_120301b_c8941%7Cmrna-decapping.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8091%7Cgram.for.25540-27155.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.25540-27155.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.25540-27155.Ar_EST_120301b_c8091%7Cgram.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9708%7Cprotein.for.26626-28000.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.26626-28000.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.26626-28000.Ar_EST_120301b_c9708%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2949%7Cprotein.for.27412-29105.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.27412-29105.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.27412-29105.Ar_EST_120301b_c2949%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17989%7Cgolgin.for.31210-32198.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.31210-32198.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.31210-32198.Ar_EST_120301b_c17989%7Cgolgin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16259%7Cpolyadenylate-binding.for.30808-32056.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.30808-32056.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.30808-32056.Ar_EST_120301b_c16259%7Cpolyadenylate-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2387%7Cacyl-.for.31890-33234.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.31890-33234.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.31890-33234.Ar_EST_120301b_c2387%7Cacyl-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13344%7Ctranscription.for.33215-34470.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33215-34470.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33215-34470.Ar_EST_120301b_rep_c13344%7Ctranscription.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4140%7Ctranscription.for.33145-34529.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33145-34529.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33145-34529.Ar_EST_120301b_rep_c4140%7Ctranscription.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18913%7Ctranscription.for.33177-34321.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33177-34321.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33177-34321.Ar_EST_120301b_rep_c18913%7Ctranscription.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8510%7Ctranscription.for.33317-34420.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33317-34420.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33317-34420.Ar_EST_120301b_rep_c8510%7Ctranscription.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15808%7Cnascent.for.33280-34495.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33280-34495.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33280-34495.Ar_EST_120301b_rep_c15808%7Cnascent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9214%7Ccoiled-coil.for.39058-40408.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.39058-40408.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.39058-40408.Ar_EST_120301b_c9214%7Ccoiled-coil.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19600%7Ccoiled-coil.for.38864-40377.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.38864-40377.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.38864-40377.Ar_EST_120301b_c19600%7Ccoiled-coil.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18901%7Cdna.for.39766-41076.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.39766-41076.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.39766-41076.Ar_EST_120301b_c18901%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3719%7Cddb1-.for.40713-42856.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.40713-42856.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.40713-42856.Ar_EST_120301b_c3719%7Cddb1-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18822%7Cauf_.for.43214-44648.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.43214-44648.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.43214-44648.Ar_EST_120301b_c18822%7Cauf_.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8190%7Ctilapia.for.43181-44516.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.43181-44516.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.43181-44516.Ar_EST_120301b_c8190%7Ctilapia.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13048%7Ccbs.for.45243-46586.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.45243-46586.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.45243-46586.Ar_EST_120301b_c13048%7Ccbs.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3085%7Cprotein.for.44775-46572.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.44775-46572.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.44775-46572.Ar_EST_120301b_c3085%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19474%7Ccbs.for.45854-47315.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.45854-47315.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.45854-47315.Ar_EST_120301b_c19474%7Ccbs.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3208%7Cdihydrolipoamide.for.46625-48544.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.46625-48544.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.46625-48544.Ar_EST_120301b_c3208%7Cdihydrolipoamide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1995%7Cperoxidase-like.for.52915-54181.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.52915-54181.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.52915-54181.Ar_EST_120301b_c1995%7Cperoxidase-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16093%7Csmall.for.53639-54991.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.53639-54991.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.53639-54991.Ar_EST_120301b_c16093%7Csmall.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10212%7Ccv03-normalized.for.57094-58040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.57094-58040.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.57094-58040.Ar_EST_120301b_c10212%7Ccv03-normalized.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11832%7Ctranscriptional.for.59175-60514.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.59175-60514.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.59175-60514.Ar_EST_120301b_c11832%7Ctranscriptional.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9386%7Caldehyde.for.60398-61477.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.60398-61477.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.60398-61477.Ar_EST_120301b_rep_c9386%7Caldehyde.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5837%7Cubiquitin-ribosomal.for.60397-61481.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.60397-61481.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.60397-61481.Ar_EST_120301b_rep_c5837%7Cubiquitin-ribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10610%7Carsenical.for.67383-68847.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.67383-68847.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.67383-68847.Ar_EST_120301b_c10610%7Carsenical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14571%7Cgrowth.for.81450-82610.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.81450-82610.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.81450-82610.Ar_EST_120301b_c14571%7Cgrowth.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8106%7Cglycosyl.for.87454-89144.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.87454-89144.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.87454-89144.Ar_EST_120301b_c8106%7Cglycosyl.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:25 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:22 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:19 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:22 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:34 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:23 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:29 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:28 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:30 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:26 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096446%7Cgb%7CEFC50074%2E1%7C.for.21443-22914.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.21443-22914.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.21443-22914.gi%7C284096446%7Cgb%7CEFC50074%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088239%7Cgb%7CEFC41904%2E1%7C.for.21428-22911.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.21428-22911.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.21428-22911.gi%7C284088239%7Cgb%7CEFC41904%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088728%7Cgb%7CEFC42390%2E1%7C.for.26581-27899.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.26581-27899.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.26581-27899.gi%7C284088728%7Cgb%7CEFC42390%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093986%7Cgb%7CEFC47622%2E1%7C.for.27297-29125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.27297-29125.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.27297-29125.gi%7C284093986%7Cgb%7CEFC47622%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083389%7Cgb%7CEFC37093%2E1%7C.for.40629-42867.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.40629-42867.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.40629-42867.gi%7C284083389%7Cgb%7CEFC37093%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088661%7Cgb%7CEFC42323%2E1%7C.for.42233-43607.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.42233-43607.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.42233-43607.gi%7C284088661%7Cgb%7CEFC42323%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084450%7Cgb%7CEFC38143%2E1%7C.for.44718-47219.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.44718-47219.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.44718-47219.gi%7C284084450%7Cgb%7CEFC38143%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087263%7Cgb%7CEFC40934%2E1%7C.for.44718-47219.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.44718-47219.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.44718-47219.gi%7C284087263%7Cgb%7CEFC40934%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094712%7Cgb%7CEFC48345%2E1%7C.for.46566-48732.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.46566-48732.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.46566-48732.gi%7C284094712%7Cgb%7CEFC48345%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C260677510%7Cgb%7CACX47992%2E1%7C.for.46575-48732.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.46575-48732.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.46575-48732.gi%7C260677510%7Cgb%7CACX47992%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C42795417%7Cgb%7CAAS46035%2E1%7C.for.49226-51258.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.49226-51258.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.49226-51258.gi%7C42795417%7Cgb%7CAAS46035%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092604%7Cgb%7CEFC46245%2E1%7C.for.48980-51279.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.48980-51279.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.48980-51279.gi%7C284092604%7Cgb%7CEFC46245%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091110%7Cgb%7CEFC44758%2E1%7C.for.54320-55659.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.54320-55659.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.54320-55659.gi%7C284091110%7Cgb%7CEFC44758%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087591%7Cgb%7CEFC41260%2E1%7C.for.61695-63855.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.61695-63855.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.61695-63855.gi%7C284087591%7Cgb%7CEFC41260%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090807%7Cgb%7CEFC44457%2E1%7C.for.61689-64185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.61689-64185.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.61689-64185.gi%7C284090807%7Cgb%7CEFC44457%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087960%7Cgb%7CEFC41626%2E1%7C.for.61695-64170.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.61695-64170.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.61695-64170.gi%7C284087960%7Cgb%7CEFC41626%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091709%7Cgb%7CEFC45354%2E1%7C.for.61689-64167.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.61689-64167.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.61689-64167.gi%7C284091709%7Cgb%7CEFC45354%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086829%7Cgb%7CEFC40503%2E1%7C.for.67184-69094.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.67184-69094.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.67184-69094.gi%7C284086829%7Cgb%7CEFC40503%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:10 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:10 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:22 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.2074-3158.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.2074-3158.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.2074-3158.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.27496-28925.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.27496-28925.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.27496-28925.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.31007-31856.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.31007-31856.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.31007-31856.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.33344-34338.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.33344-34338.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.33344-34338.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.39257-40208.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.39257-40208.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.39257-40208.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.40828-43407.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.40828-43407.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.40828-43407.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.44917-48532.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.44917-48532.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.44917-48532.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.53095-53981.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.53095-53981.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.53095-53981.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.67383-68894.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.67383-68894.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.67383-68894.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.81649-82410.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.81649-82410.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.81649-82410.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.1608-2246.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.1608-2246.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.1608-2246.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.2940-8342.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.2940-8342.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.2940-8342.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.11022-12898.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.11022-12898.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.11022-12898.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.12912-14308.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.12912-14308.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.12912-14308.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.16198-17982.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.16198-17982.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.16198-17982.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.21437-22714.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.21437-22714.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.21437-22714.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.25739-27800.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.25739-27800.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.25739-27800.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.32089-33069.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.32089-33069.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.32089-33069.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.39063-40876.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.39063-40876.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.39063-40876.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.43380-44448.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.43380-44448.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.43380-44448.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.49179-51079.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.49179-51079.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.49179-51079.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.53834-54791.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.53834-54791.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.53834-54791.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.57293-57840.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.57293-57840.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.57293-57840.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.59374-60314.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.59374-60314.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.59374-60314.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.61888-63967.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.61888-63967.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.61888-63967.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.87653-88944.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.87653-88944.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.87653-88944.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C18 Length: 97524 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C18.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C18.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig956%7Cist1.for.1393-3113.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.1393-3113.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.1393-3113.120301b_Contig956%7Cist1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c207%7Ccyclophilin.for.2372-3908.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.2372-3908.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.2372-3908.Ar_EST_120301b_c207%7Ccyclophilin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9680%7Csialate.for.2871-4336.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.2871-4336.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.2871-4336.Ar_EST_120301b_c9680%7Csialate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11909%7Cpredicted.for.10205-11801.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.10205-11801.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.10205-11801.Ar_EST_120301b_c11909%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17317%7Chypothetical.for.12208-13469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.12208-13469.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.12208-13469.Ar_EST_120301b_c17317%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1848%7Cserine.for.13277-15049.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.13277-15049.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.13277-15049.Ar_EST_120301b_c1848%7Cserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12449%7Cpeptidase.for.13848-14943.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.13848-14943.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.13848-14943.Ar_EST_120301b_c12449%7Cpeptidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14570%7Cserine.for.13254-14383.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.13254-14383.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.13254-14383.Ar_EST_120301b_c14570%7Cserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13149%7Csodium%3Asolute.for.14314-15606.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.14314-15606.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.14314-15606.Ar_EST_120301b_c13149%7Csodium%3Asolute.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13340%7Cjle00002651.for.17297-18594.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.17297-18594.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.17297-18594.Ar_EST_120301b_c13340%7Cjle00002651.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3112%7Cprotein.for.21072-23154.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.21072-23154.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.21072-23154.Ar_EST_120301b_c3112%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4384%7Casparaginyl-trna.for.23099-25361.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.23099-25361.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.23099-25361.Ar_EST_120301b_rep_c4384%7Casparaginyl-trna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6569%7Casparaginyl-trna.for.23655-25076.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.23655-25076.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.23655-25076.Ar_EST_120301b_rep_c6569%7Casparaginyl-trna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19437%7Cphosphatidylserine.for.25508-26638.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.25508-26638.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.25508-26638.Ar_EST_120301b_c19437%7Cphosphatidylserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7907%7Cphosphatidylserine.for.25067-26654.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.25067-26654.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.25067-26654.Ar_EST_120301b_c7907%7Cphosphatidylserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19136%7Cphosphatidylserine.for.25501-26838.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.25501-26838.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.25501-26838.Ar_EST_120301b_c19136%7Cphosphatidylserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12567%7Cbp914876.for.26854-28102.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.26854-28102.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.26854-28102.Ar_EST_120301b_c12567%7Cbp914876.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c474%7Crasgef.for.26750-28162.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.26750-28162.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.26750-28162.Ar_EST_120301b_c474%7Crasgef.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10283%7Crasgef.for.27456-29229.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.27456-29229.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.27456-29229.Ar_EST_120301b_c10283%7Crasgef.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1820%7Crasgef.for.28529-29887.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.28529-29887.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.28529-29887.Ar_EST_120301b_c1820%7Crasgef.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1034%7C6-phosphogluconate.for.31048-33315.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31048-33315.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31048-33315.120301b_Contig1034%7C6-phosphogluconate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14395%7Cacrasis.for.31744-32774.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31744-32774.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31744-32774.Ar_EST_120301b_c14395%7Cacrasis.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14855%7C6-phosphogluconate.for.31784-32819.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31784-32819.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31784-32819.Ar_EST_120301b_rep_c14855%7C6-phosphogluconate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig595%7Cprefoldin.for.32824-34284.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.32824-34284.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.32824-34284.120301b_Contig595%7Cprefoldin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9174%7Cig.for.38880-40636.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.38880-40636.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.38880-40636.Ar_EST_120301b_c9174%7Cig.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15067%7C6-phosphogluconolactonase.for.42321-43789.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.42321-43789.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.42321-43789.Ar_EST_120301b_c15067%7C6-phosphogluconolactonase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1603%7Coxidoreductase.for.43514-45581.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.43514-45581.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.43514-45581.Ar_EST_120301b_c1603%7Coxidoreductase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5690%7Czinc-binding.for.43646-45239.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.43646-45239.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.43646-45239.Ar_EST_120301b_rep_c5690%7Czinc-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10070%7Cprotein.for.44178-45537.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.44178-45537.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.44178-45537.Ar_EST_120301b_rep_c10070%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17326%7Cforkhead.for.47118-48572.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.47118-48572.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.47118-48572.Ar_EST_120301b_c17326%7Cforkhead.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18313%7Csh3-domain.for.48128-49291.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.48128-49291.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.48128-49291.Ar_EST_120301b_c18313%7Csh3-domain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15882%7Cprotein.for.48571-49859.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.48571-49859.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.48571-49859.Ar_EST_120301b_c15882%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9855%7Cunq88-.for.49262-51251.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.49262-51251.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.49262-51251.Ar_EST_120301b_rep_c9855%7Cunq88-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5404%7Cunq88-.for.49663-51470.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.49663-51470.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.49663-51470.Ar_EST_120301b_rep_c5404%7Cunq88-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14063%7Cvir_sct982_g01_jp7_4g1_002.for.51685-52680.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.51685-52680.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.51685-52680.Ar_EST_120301b_c14063%7Cvir_sct982_g01_jp7_4g1_002.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15610%7Cautophagy.for.52013-53304.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.52013-53304.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.52013-53304.Ar_EST_120301b_c15610%7Cautophagy.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9411%7C%28%2B%29-neomenthol.for.55320-56583.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.55320-56583.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.55320-56583.Ar_EST_120301b_c9411%7C%28%2B%29-neomenthol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11031%7Cdinucleoside.for.56198-57706.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.56198-57706.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.56198-57706.Ar_EST_120301b_c11031%7Cdinucleoside.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15310%7Cprotein.for.57832-59418.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.57832-59418.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.57832-59418.Ar_EST_120301b_c15310%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15%7Chypothetical.for.59021-60766.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.59021-60766.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.59021-60766.Ar_EST_120301b_c15%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11961%7Cabc.for.59276-60425.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.59276-60425.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.59276-60425.Ar_EST_120301b_rep_c11961%7Cabc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c342%7Ceukaryotic.for.60117-62820.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.60117-62820.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.60117-62820.Ar_EST_120301b_c342%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6325%7Ceukaryotic.for.60122-62377.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.60122-62377.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.60122-62377.Ar_EST_120301b_rep_c6325%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14038%7Ceukaryotic.for.60334-61979.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.60334-61979.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.60334-61979.Ar_EST_120301b_rep_c14038%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10838%7Cpredicted.for.63235-64205.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.63235-64205.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.63235-64205.Ar_EST_120301b_c10838%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15959%7Cnon-transporter.for.63573-64952.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.63573-64952.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.63573-64952.Ar_EST_120301b_c15959%7Cnon-transporter.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1121%7Cnitrate.for.65272-66840.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.65272-66840.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.65272-66840.Ar_EST_120301b_c1121%7Cnitrate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10306%7Cnitrate.for.64797-66084.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.64797-66084.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.64797-66084.Ar_EST_120301b_c10306%7Cnitrate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7785%7Cnitrate.for.66081-68119.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.66081-68119.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.66081-68119.Ar_EST_120301b_c7785%7Cnitrate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16968%7Cguanylate.for.70042-71135.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.70042-71135.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.70042-71135.Ar_EST_120301b_c16968%7Cguanylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3296%7Ctranscription.for.72211-73510.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.72211-73510.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.72211-73510.Ar_EST_120301b_c3296%7Ctranscription.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12094%7Cpredicted.for.72879-74208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.72879-74208.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.72879-74208.Ar_EST_120301b_c12094%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16226%7Cprotein.for.73862-75151.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.73862-75151.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.73862-75151.Ar_EST_120301b_c16226%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3632%7Creceptor-interacting.for.74428-76656.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.74428-76656.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.74428-76656.Ar_EST_120301b_c3632%7Creceptor-interacting.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4371%7Ctata-binding.for.79865-81399.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.79865-81399.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.79865-81399.Ar_EST_120301b_rep_c4371%7Ctata-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1339%7Cupf0577.for.81265-84505.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.81265-84505.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.81265-84505.120301b_Contig1339%7Cupf0577.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13539%7C---NA---.for.89697-91031.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.89697-91031.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.89697-91031.Ar_EST_120301b_c13539%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18466%7Cchaetosphaeridium.for.90173-91792.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.90173-91792.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.90173-91792.Ar_EST_120301b_c18466%7Cchaetosphaeridium.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17951%7Cclp.for.91022-92635.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.91022-92635.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.91022-92635.Ar_EST_120301b_c17951%7Cclp.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19464%7Cbf-sam-tir-like.for.96236-97524.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.96236-97524.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.96236-97524.Ar_EST_120301b_c19464%7Cbf-sam-tir-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1663%7Csterile.for.96052-97524.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.96052-97524.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.96052-97524.Ar_EST_120301b_c1663%7Csterile.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:16 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:10 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:22 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:12 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:17 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:17 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:22 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:20 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:14 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:14 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095252%7Cgb%7CEFC48883%2E1%7C.for.8997-10627.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.8997-10627.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.8997-10627.gi%7C284095252%7Cgb%7CEFC48883%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094339%7Cgb%7CEFC47973%2E1%7C.for.8937-10627.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.8937-10627.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.8937-10627.gi%7C284094339%7Cgb%7CEFC47973%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082802%7Cgb%7CEFC36513%2E1%7C.for.8949-10624.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.8949-10624.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.8949-10624.gi%7C284082802%7Cgb%7CEFC36513%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086622%7Cgb%7CEFC40297%2E1%7C.for.9150-10633.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.9150-10633.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.9150-10633.gi%7C284086622%7Cgb%7CEFC40297%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090173%7Cgb%7CEFC43826%2E1%7C.for.8919-10624.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.8919-10624.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.8919-10624.gi%7C284090173%7Cgb%7CEFC43826%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094933%7Cgb%7CEFC48565%2E1%7C.for.12954-15104.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.12954-15104.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.12954-15104.gi%7C284094933%7Cgb%7CEFC48565%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090440%7Cgb%7CEFC44092%2E1%7C.for.21395-23692.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.21395-23692.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.21395-23692.gi%7C284090440%7Cgb%7CEFC44092%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095286%7Cgb%7CEFC48917%2E1%7C.for.21485-23695.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.21485-23695.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.21485-23695.gi%7C284095286%7Cgb%7CEFC48917%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095446%7Cgb%7CEFC49077%2E1%7C.for.21485-23695.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.21485-23695.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.21485-23695.gi%7C284095446%7Cgb%7CEFC49077%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092248%7Cgb%7CEFC45891%2E1%7C.for.23192-25461.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.23192-25461.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.23192-25461.gi%7C284092248%7Cgb%7CEFC45891%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092767%7Cgb%7CEFC46408%2E1%7C.for.28190-30464.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.28190-30464.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.28190-30464.gi%7C284092767%7Cgb%7CEFC46408%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089590%7Cgb%7CEFC43247%2E1%7C.for.28208-30458.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.28208-30458.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.28208-30458.gi%7C284089590%7Cgb%7CEFC43247%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089589%7Cgb%7CEFC43246%2E1%7C.for.28208-30458.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.28208-30458.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.28208-30458.gi%7C284089589%7Cgb%7CEFC43246%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095088%7Cgb%7CEFC48720%2E1%7C.for.31080-33301.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31080-33301.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31080-33301.gi%7C284095088%7Cgb%7CEFC48720%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C18644664%7Cgb%7CAAL76318%2E1%7CAF394508_1.for.31116-33244.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31116-33244.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31116-33244.gi%7C18644664%7Cgb%7CAAL76318%2E1%7CAF394508_1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092926%7Cgb%7CEFC46566%2E1%7C.for.33923-35247.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.33923-35247.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.33923-35247.gi%7C284092926%7Cgb%7CEFC46566%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084413%7Cgb%7CEFC38106%2E1%7C.for.45120-46202.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.45120-46202.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.45120-46202.gi%7C284084413%7Cgb%7CEFC38106%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093891%7Cgb%7CEFC47527%2E1%7C.for.56356-57467.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.56356-57467.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.56356-57467.gi%7C284093891%7Cgb%7CEFC47527%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090358%7Cgb%7CEFC44010%2E1%7C.for.62297-65300.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.62297-65300.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.62297-65300.gi%7C284090358%7Cgb%7CEFC44010%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097074%7Cgb%7CEFC50701%2E1%7C.for.65494-66551.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.65494-66551.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.65494-66551.gi%7C284097074%7Cgb%7CEFC50701%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095485%7Cgb%7CEFC49116%2E1%7C.for.70054-71453.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.70054-71453.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.70054-71453.gi%7C284095485%7Cgb%7CEFC49116%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084029%7Cgb%7CEFC37726%2E1%7C.for.73767-75085.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.73767-75085.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.73767-75085.gi%7C284084029%7Cgb%7CEFC37726%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090329%7Cgb%7CEFC43981%2E1%7C.for.75286-76406.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.75286-76406.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.75286-76406.gi%7C284090329%7Cgb%7CEFC43981%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093550%7Cgb%7CEFC47187%2E1%7C.for.79969-81246.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.79969-81246.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.79969-81246.gi%7C284093550%7Cgb%7CEFC47187%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091548%7Cgb%7CEFC45194%2E1%7C.for.93315-94324.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.93315-94324.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.93315-94324.gi%7C284091548%7Cgb%7CEFC45194%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:14 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:12 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.1592-2913.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.1592-2913.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.1592-2913.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.9118-10433.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.9118-10433.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.9118-10433.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.12407-14904.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.12407-14904.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.12407-14904.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.17496-18394.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.17496-18394.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.17496-18394.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.21271-25261.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.21271-25261.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.21271-25261.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.25266-26638.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.25266-26638.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.25266-26638.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.26949-29687.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.26949-29687.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.26949-29687.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.31279-34084.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.31279-34084.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.31279-34084.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.34122-35047.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.34122-35047.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.34122-35047.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.39079-40436.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.39079-40436.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.39079-40436.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.42520-43589.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.42520-43589.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.42520-43589.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.45319-46002.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.45319-46002.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.45319-46002.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.47317-51270.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.47317-51270.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.47317-51270.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.58005-59218.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.58005-59218.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.58005-59218.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.59220-60582.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.59220-60582.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.59220-60582.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.73060-74951.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.73060-74951.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.73060-74951.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.81464-84305.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.81464-84305.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.81464-84305.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.3070-4136.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.3070-4136.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.3070-4136.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.10404-11601.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.10404-11601.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.10404-11601.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.14508-15406.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.14508-15406.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.14508-15406.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.43713-45381.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.43713-45381.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.43713-45381.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.52212-53104.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.52212-53104.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.52212-53104.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.55519-56383.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.55519-56383.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.55519-56383.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.56397-57506.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.56397-57506.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.56397-57506.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.60316-67919.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.60316-67919.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.60316-67919.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.70101-71253.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.70101-71253.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.70101-71253.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.74627-76479.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.74627-76479.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.74627-76479.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.80064-81199.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.80064-81199.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.80064-81199.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.89896-91592.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.89896-91592.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.89896-91592.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.93514-94124.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.93514-94124.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.93514-94124.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.96251-97449.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.96251-97449.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.96251-97449.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C19 Length: 217569 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:2 current j:0 j_size:2 current j:1 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C19.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C19.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:13 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:17 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:8 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:20 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:10 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:19 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:15 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:11 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:15 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:19 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18086%7Cpredicted.for.1806-3007.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.1806-3007.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.1806-3007.Ar_EST_120301b_c18086%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17569%7Cme1-0071p-a159-f12-.for.4726-5785.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.4726-5785.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.4726-5785.Ar_EST_120301b_c17569%7Cme1-0071p-a159-f12-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14143%7Cpredicted.for.5350-6841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.5350-6841.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.5350-6841.Ar_EST_120301b_c14143%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8188%7Chuntingtin.for.6217-7987.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.6217-7987.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.6217-7987.Ar_EST_120301b_c8188%7Chuntingtin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7996%7Cglyceraldehyde-3-phosphate.for.7708-8784.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.7708-8784.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.7708-8784.Ar_EST_120301b_rep_c7996%7Cglyceraldehyde-3-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5073%7Cpra1.for.8169-9759.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.8169-9759.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.8169-9759.Ar_EST_120301b_rep_c5073%7Cpra1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5868%7Cpra1.for.8338-9754.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.8338-9754.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.8338-9754.Ar_EST_120301b_rep_c5868%7Cpra1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c971%7Cprotein.for.10089-11433.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.10089-11433.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.10089-11433.Ar_EST_120301b_c971%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17756%7Cdna.for.14180-15515.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.14180-15515.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.14180-15515.Ar_EST_120301b_c17756%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6314%7Cbi146m05.for.20010-21370.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.20010-21370.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.20010-21370.Ar_EST_120301b_rep_c6314%7Cbi146m05.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18921%7C---NA---.for.20166-21202.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.20166-21202.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.20166-21202.Ar_EST_120301b_rep_c18921%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19041%7C---NA---.for.20072-21110.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.20072-21110.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.20072-21110.Ar_EST_120301b_rep_c19041%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1735%7Cdna.for.19510-21674.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.19510-21674.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.19510-21674.Ar_EST_120301b_c1735%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13965%7Ctryptophan.for.20308-21500.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.20308-21500.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.20308-21500.Ar_EST_120301b_rep_c13965%7Ctryptophan.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4463%7C---NA---.for.21337-22786.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.21337-22786.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.21337-22786.Ar_EST_120301b_rep_c4463%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11964%7Chistone.for.26141-27552.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.26141-27552.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.26141-27552.Ar_EST_120301b_c11964%7Chistone.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14853%7Cpredicted.for.25824-26912.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.25824-26912.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.25824-26912.Ar_EST_120301b_c14853%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c725%7Cprotein.for.25790-27759.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.25790-27759.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.25790-27759.Ar_EST_120301b_c725%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14261%7C---NA---.for.27658-28561.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.27658-28561.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.27658-28561.Ar_EST_120301b_c14261%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11200%7Cperoxisome.for.28574-30060.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.28574-30060.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.28574-30060.Ar_EST_120301b_c11200%7Cperoxisome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16384%7C---NA---.for.28150-29386.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.28150-29386.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.28150-29386.Ar_EST_120301b_c16384%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16810%7Cperoxisomal.for.29540-30925.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.29540-30925.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.29540-30925.Ar_EST_120301b_c16810%7Cperoxisomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1284%7Cshwachman-bodian-diamond.for.30724-31913.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.30724-31913.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.30724-31913.Ar_EST_120301b_c1284%7Cshwachman-bodian-diamond.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2405%7Crna-associated.for.30286-31904.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.30286-31904.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.30286-31904.Ar_EST_120301b_c2405%7Crna-associated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7523%7Cshwachman-bodian-diamond.for.30411-31683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.30411-31683.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.30411-31683.Ar_EST_120301b_rep_c7523%7Cshwachman-bodian-diamond.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c858%7Csuccinate-.for.35387-37427.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.35387-37427.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.35387-37427.Ar_EST_120301b_c858%7Csuccinate-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14975%7Cgc-rich.for.36799-38057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.36799-38057.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.36799-38057.Ar_EST_120301b_c14975%7Cgc-rich.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17619%7Cgc-rich.for.37259-38400.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.37259-38400.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.37259-38400.Ar_EST_120301b_c17619%7Cgc-rich.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11908%7Cwd40.for.37236-38338.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.37236-38338.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.37236-38338.Ar_EST_120301b_c11908%7Cwd40.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9665%7Ctyrosyl-trna.for.40531-41818.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.40531-41818.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.40531-41818.Ar_EST_120301b_c9665%7Ctyrosyl-trna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15790%7Cadenylyltransferase.for.41871-43101.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.41871-43101.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.41871-43101.Ar_EST_120301b_c15790%7Cadenylyltransferase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18381%7C2-methylisocitrate.for.43546-44773.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.43546-44773.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.43546-44773.Ar_EST_120301b_c18381%7C2-methylisocitrate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1141%7Cmethylisocitrate.for.43547-45200.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.43547-45200.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.43547-45200.Ar_EST_120301b_c1141%7Cmethylisocitrate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5326%7Ccazn.for.46335-47659.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.46335-47659.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.46335-47659.Ar_EST_120301b_rep_c5326%7Ccazn.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16278%7Chh_ystg_54f02_t3.for.48455-49896.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.48455-49896.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.48455-49896.Ar_EST_120301b_c16278%7Chh_ystg_54f02_t3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3313%7Cdc896819.for.47270-49327.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.47270-49327.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.47270-49327.Ar_EST_120301b_c3313%7Cdc896819.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15481%7Cnadh-dependent.for.55949-56970.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.55949-56970.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.55949-56970.Ar_EST_120301b_c15481%7Cnadh-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6369%7Ccathepsin.for.56950-58951.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.56950-58951.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.56950-58951.Ar_EST_120301b_rep_c6369%7Ccathepsin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6703%7Ccathepsin.for.57416-58951.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57416-58951.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57416-58951.Ar_EST_120301b_rep_c6703%7Ccathepsin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5635%7Ccathepsin.for.57081-58956.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57081-58956.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57081-58956.Ar_EST_120301b_rep_c5635%7Ccathepsin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15567%7Ccathepsin.for.57591-58542.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57591-58542.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57591-58542.Ar_EST_120301b_rep_c15567%7Ccathepsin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18626%7Cschistosoma.for.57553-58871.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57553-58871.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57553-58871.Ar_EST_120301b_rep_c18626%7Cschistosoma.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4114%7Ccathepsin.for.57073-58967.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57073-58967.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57073-58967.Ar_EST_120301b_rep_c4114%7Ccathepsin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12361%7Cdna.for.58245-59385.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.58245-59385.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.58245-59385.Ar_EST_120301b_c12361%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11199%7Centh.for.58624-60297.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.58624-60297.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.58624-60297.Ar_EST_120301b_c11199%7Centh.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2376%7Cregulator.for.60776-62236.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.60776-62236.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.60776-62236.Ar_EST_120301b_c2376%7Cregulator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c291%7Cregulator.for.60402-63026.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.60402-63026.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.60402-63026.Ar_EST_120301b_c291%7Cregulator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14264%7Cdpo07-eadult-whole-untreated-unnorm.for.68959-70300.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.68959-70300.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.68959-70300.Ar_EST_120301b_c14264%7Cdpo07-eadult-whole-untreated-unnorm.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1316%7Cpeptide.for.70993-72991.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.70993-72991.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.70993-72991.Ar_EST_120301b_c1316%7Cpeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8577%7Cpeptide.for.70981-72404.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.70981-72404.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.70981-72404.Ar_EST_120301b_c8577%7Cpeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14052%7Cadenosylhomocysteinase.for.74276-75452.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.74276-75452.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.74276-75452.Ar_EST_120301b_rep_c14052%7Cadenosylhomocysteinase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4278%7Cdihydrolipoamide.for.73633-75728.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.73633-75728.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.73633-75728.Ar_EST_120301b_rep_c4278%7Cdihydrolipoamide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12796%7Csestrin-like.for.75023-76366.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.75023-76366.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.75023-76366.Ar_EST_120301b_c12796%7Csestrin-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14013%7Cenvelope.for.75631-76655.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.75631-76655.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.75631-76655.Ar_EST_120301b_c14013%7Cenvelope.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c294%7Csestrin-like.for.75776-77286.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.75776-77286.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.75776-77286.Ar_EST_120301b_c294%7Csestrin-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10956%7C---NA---.for.77886-79247.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.77886-79247.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.77886-79247.Ar_EST_120301b_c10956%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11463%7Chypothetical.for.80337-81687.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.80337-81687.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.80337-81687.Ar_EST_120301b_c11463%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9893%7Cpq-loop.for.81376-82839.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.81376-82839.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.81376-82839.Ar_EST_120301b_c9893%7Cpq-loop.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16844%7Chypothetical.for.93623-95050.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.93623-95050.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.93623-95050.Ar_EST_120301b_c16844%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6574%7Cprotein.for.94548-96085.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.94548-96085.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.94548-96085.Ar_EST_120301b_rep_c6574%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12988%7Cmembrane.for.96666-97923.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.96666-97923.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.96666-97923.Ar_EST_120301b_c12988%7Cmembrane.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1227%7Clysophospholipid.for.96104-98415.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.96104-98415.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.96104-98415.Ar_EST_120301b_c1227%7Clysophospholipid.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15198%7Ct-complex.for.96435-97629.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.96435-97629.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.96435-97629.Ar_EST_120301b_rep_c15198%7Ct-complex.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c821%7Csco.for.98203-99525.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.98203-99525.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.98203-99525.Ar_EST_120301b_c821%7Csco.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16830%7C---NA---.for.101216-102554.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.101216-102554.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.101216-102554.Ar_EST_120301b_c16830%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c765%7Cstart.for.100984-102358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.100984-102358.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.100984-102358.Ar_EST_120301b_c765%7Cstart.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1011%7Cactin.for.102913-104263.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102913-104263.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102913-104263.120301b_Contig1011%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7459%7Cubiquitin.for.102549-103922.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102549-103922.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102549-103922.Ar_EST_120301b_rep_c7459%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7281%7Cactin.for.102559-103719.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102559-103719.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102559-103719.Ar_EST_120301b_rep_c7281%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19974%7Cbeta.for.102516-103491.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102516-103491.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102516-103491.Ar_EST_120301b_rep_c19974%7Cbeta.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16282%7Cfq664523.for.102847-103750.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102847-103750.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102847-103750.Ar_EST_120301b_c16282%7Cfq664523.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig782%7Cactin.for.102545-104472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104472.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104472.120301b_Contig782%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4045%7Cactin.for.102541-103983.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102541-103983.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102541-103983.Ar_EST_120301b_rep_c4045%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10438%7Cactin.for.103088-104291.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103088-104291.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103088-104291.Ar_EST_120301b_c10438%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7317%7Cbeta.for.102533-103683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102533-103683.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102533-103683.Ar_EST_120301b_rep_c7317%7Cbeta.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6795%7Cbeta.for.102544-103668.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102544-103668.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102544-103668.Ar_EST_120301b_rep_c6795%7Cbeta.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig573%7Cactin.for.102881-104288.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102881-104288.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102881-104288.120301b_Contig573%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5842%7Cactin.for.102638-104158.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102638-104158.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102638-104158.Ar_EST_120301b_rep_c5842%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1143%7Cactin.for.102554-103861.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-103861.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-103861.120301b_Contig1143%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7283%7Cbeta-actin.for.102622-103856.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102622-103856.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102622-103856.Ar_EST_120301b_rep_c7283%7Cbeta-actin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20286%7Cactin.for.103194-104293.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103194-104293.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103194-104293.Ar_EST_120301b_rep_c20286%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6785%7Cactin.for.103351-104481.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103351-104481.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103351-104481.Ar_EST_120301b_rep_c6785%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8932%7Cactin.for.102900-104033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102900-104033.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102900-104033.Ar_EST_120301b_c8932%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6177%7Cactin.for.102541-104472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102541-104472.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102541-104472.Ar_EST_120301b_rep_c6177%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1364%7Cactin.for.103165-104442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103165-104442.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103165-104442.120301b_Contig1364%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10740%7Cactin.for.102897-104034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102897-104034.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102897-104034.Ar_EST_120301b_rep_c10740%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7052%7Cactin.for.102980-104144.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102980-104144.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102980-104144.Ar_EST_120301b_rep_c7052%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16711%7Cactin-like.for.103455-104490.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103455-104490.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103455-104490.Ar_EST_120301b_rep_c16711%7Cactin-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5397%7Cbeta.for.102544-103526.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102544-103526.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102544-103526.Ar_EST_120301b_rep_c5397%7Cbeta.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4024%7Cactin.for.102516-104514.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102516-104514.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102516-104514.Ar_EST_120301b_rep_c4024%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6690%7Cactin.for.103188-104366.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103188-104366.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103188-104366.Ar_EST_120301b_rep_c6690%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7250%7Cbeta-actin.for.102623-103775.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102623-103775.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102623-103775.Ar_EST_120301b_rep_c7250%7Cbeta-actin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7417%7Cactin.for.102573-103644.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102573-103644.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102573-103644.Ar_EST_120301b_rep_c7417%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4576%7Cactin.for.102713-104514.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102713-104514.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102713-104514.Ar_EST_120301b_rep_c4576%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6565%7Cactin.for.103281-104486.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103281-104486.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103281-104486.Ar_EST_120301b_rep_c6565%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11279%7Cactin.for.103111-104199.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103111-104199.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103111-104199.Ar_EST_120301b_c11279%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1814%7Cactin.for.102544-104002.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102544-104002.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102544-104002.Ar_EST_120301b_c1814%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7237%7Cubiquitin.for.102545-103765.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-103765.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-103765.Ar_EST_120301b_rep_c7237%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6092%7Cbeta.for.102545-103710.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-103710.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-103710.Ar_EST_120301b_rep_c6092%7Cbeta.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20475%7Cbeta.for.102545-103679.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-103679.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-103679.Ar_EST_120301b_rep_c20475%7Cbeta.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6612%7Cbeta-actin.for.102769-103850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102769-103850.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102769-103850.Ar_EST_120301b_rep_c6612%7Cbeta-actin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4013%7Cactin.for.102545-104438.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104438.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104438.Ar_EST_120301b_rep_c4013%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7649%7Cactin.for.102933-104177.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102933-104177.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102933-104177.Ar_EST_120301b_rep_c7649%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5328%7Cactin.for.102896-103925.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102896-103925.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102896-103925.Ar_EST_120301b_rep_c5328%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig519%7Cactin.for.102671-104472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102671-104472.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102671-104472.120301b_Contig519%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7261%7Cactin.for.102569-103763.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102569-103763.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102569-103763.Ar_EST_120301b_rep_c7261%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7574%7Cactin.for.102927-104188.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102927-104188.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102927-104188.Ar_EST_120301b_rep_c7574%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14154%7Cactin.for.103272-104375.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103272-104375.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103272-104375.Ar_EST_120301b_rep_c14154%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16255%7Cactin.for.103218-104391.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103218-104391.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103218-104391.Ar_EST_120301b_rep_c16255%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20026%7Cactin.for.103107-104141.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103107-104141.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103107-104141.Ar_EST_120301b_c20026%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5899%7Cactin.for.102883-103950.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102883-103950.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102883-103950.Ar_EST_120301b_rep_c5899%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5955%7Cbeta-actin.for.103505-104472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103505-104472.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103505-104472.Ar_EST_120301b_rep_c5955%7Cbeta-actin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7229%7CActin.for.102557-103487.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102557-103487.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102557-103487.Ar_EST_120301b_rep_c7229%7CActin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6804%7Cprotein.for.105841-107575.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105841-107575.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105841-107575.Ar_EST_120301b_rep_c6804%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15007%7Czinc.for.108314-109528.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.108314-109528.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.108314-109528.Ar_EST_120301b_c15007%7Czinc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13370%7Cau_cv_est_008a_b02.for.109246-110294.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.109246-110294.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.109246-110294.Ar_EST_120301b_c13370%7Cau_cv_est_008a_b02.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8594%7C---NA---.for.111592-113431.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.111592-113431.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.111592-113431.Ar_EST_120301b_c8594%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16528%7C---NA---.for.113739-114926.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.113739-114926.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.113739-114926.Ar_EST_120301b_c16528%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8764%7Cpseudouridine.for.127906-129892.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.127906-129892.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.127906-129892.Ar_EST_120301b_c8764%7Cpseudouridine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11591%7Chistone.for.129444-130461.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.129444-130461.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.129444-130461.Ar_EST_120301b_rep_c11591%7Chistone.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2442%7Chistone.for.129143-130465.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.129143-130465.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.129143-130465.Ar_EST_120301b_c2442%7Chistone.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11107%7Ckynureninase.for.132897-134505.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.132897-134505.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.132897-134505.Ar_EST_120301b_c11107%7Ckynureninase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1312%7Ckynureninase.for.133454-134779.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.133454-134779.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.133454-134779.Ar_EST_120301b_c1312%7Ckynureninase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18501%7Cepoxide.for.138372-139795.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.138372-139795.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.138372-139795.Ar_EST_120301b_c18501%7Cepoxide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6221%7Cvon.for.139858-141383.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139858-141383.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139858-141383.Ar_EST_120301b_rep_c6221%7Cvon.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6322%7Cvon.for.139293-140703.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139293-140703.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139293-140703.Ar_EST_120301b_rep_c6322%7Cvon.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5569%7Cinter-alpha-trypsin.for.139281-141395.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139281-141395.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139281-141395.Ar_EST_120301b_rep_c5569%7Cinter-alpha-trypsin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6355%7Cgdp-l-fucose.for.140881-142708.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.140881-142708.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.140881-142708.Ar_EST_120301b_rep_c6355%7Cgdp-l-fucose.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19416%7Cgdp-l-fucose.for.141007-142074.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.141007-142074.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.141007-142074.Ar_EST_120301b_rep_c19416%7Cgdp-l-fucose.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4330%7Cgdp-l-fucose.for.141132-142705.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.141132-142705.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.141132-142705.Ar_EST_120301b_rep_c4330%7Cgdp-l-fucose.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15292%7Cgdp-l-fucose.for.141386-142656.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.141386-142656.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.141386-142656.Ar_EST_120301b_rep_c15292%7Cgdp-l-fucose.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8424%7Ctissue.for.140951-142356.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.140951-142356.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.140951-142356.Ar_EST_120301b_rep_c8424%7Ctissue.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12996%7Cgdp-l-fucose.for.141224-142130.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.141224-142130.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.141224-142130.Ar_EST_120301b_rep_c12996%7Cgdp-l-fucose.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14212%7Caminoglycoside.for.142125-143497.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.142125-143497.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.142125-143497.Ar_EST_120301b_c14212%7Caminoglycoside.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17261%7Cthermophilic.for.143186-144667.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.143186-144667.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.143186-144667.Ar_EST_120301b_c17261%7Cthermophilic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16136%7Cprobable.for.144243-145472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.144243-145472.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.144243-145472.Ar_EST_120301b_c16136%7Cprobable.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9764%7Cregulator.for.151181-152872.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.151181-152872.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.151181-152872.Ar_EST_120301b_rep_c9764%7Cregulator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7187%7Cregulator.for.151327-153118.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.151327-153118.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.151327-153118.Ar_EST_120301b_rep_c7187%7Cregulator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c999%7Creplication.for.161477-162850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.161477-162850.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.161477-162850.Ar_EST_120301b_c999%7Creplication.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1128%7Csoluble.for.164149-165867.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.164149-165867.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.164149-165867.120301b_Contig1128%7Csoluble.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8629%7Cgq028.for.166297-167880.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.166297-167880.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.166297-167880.Ar_EST_120301b_c8629%7Cgq028.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6086%7C60s.for.167832-169064.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167832-169064.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167832-169064.Ar_EST_120301b_rep_c6086%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig123%7C60s.for.167786-169266.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167786-169266.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167786-169266.120301b_Contig123%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18572%7Cribosomal.for.168035-169064.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.168035-169064.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.168035-169064.Ar_EST_120301b_rep_c18572%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6911%7Credoxin.for.167155-168586.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167155-168586.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167155-168586.Ar_EST_120301b_rep_c6911%7Credoxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20338%7C60s.for.167804-168909.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167804-168909.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167804-168909.Ar_EST_120301b_rep_c20338%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20172%7C60s.for.167803-169031.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167803-169031.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167803-169031.Ar_EST_120301b_rep_c20172%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11878%7C---NA---.for.168799-169695.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.168799-169695.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.168799-169695.Ar_EST_120301b_c11878%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c592%7Cglutathione-dependent.for.172691-174063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.172691-174063.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.172691-174063.Ar_EST_120301b_c592%7Cglutathione-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15602%7Cwd-40.for.174212-175463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.174212-175463.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.174212-175463.Ar_EST_120301b_c15602%7Cwd-40.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5247%7Ccawy.for.175255-177616.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.175255-177616.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.175255-177616.Ar_EST_120301b_rep_c5247%7Ccawy.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19643%7Cmetc577tf.for.175646-176943.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.175646-176943.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.175646-176943.Ar_EST_120301b_rep_c19643%7Cmetc577tf.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5668%7Cbeta-propeller.for.175225-177450.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.175225-177450.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.175225-177450.Ar_EST_120301b_rep_c5668%7Cbeta-propeller.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10167%7Chypothetical.for.175909-177339.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.175909-177339.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.175909-177339.Ar_EST_120301b_rep_c10167%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18312%7Cpuncp79tv.for.177167-178457.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.177167-178457.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.177167-178457.Ar_EST_120301b_c18312%7Cpuncp79tv.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3490%7Ccytochrome.for.178105-180411.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.178105-180411.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.178105-180411.Ar_EST_120301b_c3490%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig438%7Csilent.for.180034-181671.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.180034-181671.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.180034-181671.120301b_Contig438%7Csilent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13291%7Cmagnesium.for.181514-182950.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.181514-182950.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.181514-182950.Ar_EST_120301b_c13291%7Cmagnesium.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14685%7Ccfbx.for.182149-183291.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.182149-183291.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.182149-183291.Ar_EST_120301b_c14685%7Ccfbx.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6756%7Ccharged.for.184404-186003.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.184404-186003.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.184404-186003.Ar_EST_120301b_rep_c6756%7Ccharged.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19315%7Csperm.for.184412-185594.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.184412-185594.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.184412-185594.Ar_EST_120301b_rep_c19315%7Csperm.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8432%7Cprotein.for.186019-187330.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.186019-187330.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.186019-187330.Ar_EST_120301b_c8432%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9026%7Cadenylate.for.191652-193243.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.191652-193243.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.191652-193243.Ar_EST_120301b_c9026%7Cadenylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig232%7Cprotein.for.195299-197003.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.195299-197003.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.195299-197003.120301b_Contig232%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12355%7Cachain.for.198160-199841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.198160-199841.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.198160-199841.Ar_EST_120301b_c12355%7Cachain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11421%7Ccbpn%3A.for.199372-200960.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.199372-200960.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.199372-200960.Ar_EST_120301b_c11421%7Ccbpn%3A.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12326%7Cplasmid.for.201299-202617.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.201299-202617.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.201299-202617.Ar_EST_120301b_c12326%7Cplasmid.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9661%7Cd-lactate.for.202113-203560.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.202113-203560.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.202113-203560.Ar_EST_120301b_c9661%7Cd-lactate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12252%7Cd-2-hydroxyglutarate.for.202849-204171.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.202849-204171.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.202849-204171.Ar_EST_120301b_c12252%7Cd-2-hydroxyglutarate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig82%7Cprofilin.for.205645-207160.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.205645-207160.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.205645-207160.120301b_Contig82%7Cprofilin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19204%7Ctachyzoite.for.206003-207254.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.206003-207254.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.206003-207254.Ar_EST_120301b_c19204%7Ctachyzoite.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18472%7C0298140.for.214230-215255.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.214230-215255.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.214230-215255.Ar_EST_120301b_c18472%7C0298140.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 20 ...processing 1 of 20 ...processing 2 of 20 ...processing 3 of 20 ...processing 4 of 20 ...processing 5 of 20 ...processing 6 of 20 ...processing 7 of 20 ...processing 8 of 20 ...processing 9 of 20 ...processing 10 of 20 ...processing 11 of 20 ...processing 12 of 20 ...processing 13 of 20 ...processing 14 of 20 ...processing 15 of 20 ...processing 16 of 20 ...processing 17 of 20 ...processing 18 of 20 ...processing 19 of 20 ...trimming the rest total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:108 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:95 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:92 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:111 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:103 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:97 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:95 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:105 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:98 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:90 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082602%7Cgb%7CEFC36317%2E1%7C.for.12704-14707.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.12704-14707.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.12704-14707.gi%7C284082602%7Cgb%7CEFC36317%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091570%7Cgb%7CEFC45216%2E1%7C.for.11917-15472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.11917-15472.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.11917-15472.gi%7C284091570%7Cgb%7CEFC45216%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091249%7Cgb%7CEFC44897%2E1%7C.for.15448-16409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.15448-16409.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.15448-16409.gi%7C284091249%7Cgb%7CEFC44897%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094467%7Cgb%7CEFC48101%2E1%7C.for.17077-18694.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.17077-18694.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.17077-18694.gi%7C284094467%7Cgb%7CEFC48101%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084713%7Cgb%7CEFC38403%2E1%7C.for.19098-20221.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.19098-20221.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.19098-20221.gi%7C284084713%7Cgb%7CEFC38403%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083098%7Cgb%7CEFC36805%2E1%7C.for.18813-20302.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.18813-20302.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.18813-20302.gi%7C284083098%7Cgb%7CEFC36805%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089888%7Cgb%7CEFC43543%2E1%7C.for.25893-27843.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.25893-27843.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.25893-27843.gi%7C284089888%7Cgb%7CEFC43543%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089773%7Cgb%7CEFC43428%2E1%7C.for.26241-27855.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.26241-27855.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.26241-27855.gi%7C284089773%7Cgb%7CEFC43428%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097150%7Cgb%7CEFC50777%2E1%7C.for.29329-30989.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.29329-30989.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.29329-30989.gi%7C284097150%7Cgb%7CEFC50777%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092355%7Cgb%7CEFC45997%2E1%7C.for.29371-30977.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.29371-30977.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.29371-30977.gi%7C284092355%7Cgb%7CEFC45997%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096259%7Cgb%7CEFC49887%2E1%7C.for.29368-30926.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.29368-30926.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.29368-30926.gi%7C284096259%7Cgb%7CEFC49887%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089294%7Cgb%7CEFC42952%2E1%7C.for.30300-31853.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.30300-31853.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.30300-31853.gi%7C284089294%7Cgb%7CEFC42952%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096906%7Cgb%7CEFC50533%2E1%7C.for.31243-32294.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.31243-32294.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.31243-32294.gi%7C284096906%7Cgb%7CEFC50533%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080983%7Cgb%7CEFC35253%2E1%7C.for.32408-33930.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32408-33930.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32408-33930.gi%7C284080983%7Cgb%7CEFC35253%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083648%7Cgb%7CEFC37349%2E1%7C.for.32417-33987.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32417-33987.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32417-33987.gi%7C284083648%7Cgb%7CEFC37349%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096419%7Cgb%7CEFC50047%2E1%7C.for.32417-33759.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32417-33759.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32417-33759.gi%7C284096419%7Cgb%7CEFC50047%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084263%7Cgb%7CEFC37957%2E1%7C.for.32417-33741.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32417-33741.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32417-33741.gi%7C284084263%7Cgb%7CEFC37957%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086669%7Cgb%7CEFC40344%2E1%7C.for.32417-33459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32417-33459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32417-33459.gi%7C284086669%7Cgb%7CEFC40344%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092998%7Cgb%7CEFC46638%2E1%7C.for.35392-37509.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.35392-37509.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.35392-37509.gi%7C284092998%7Cgb%7CEFC46638%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082062%7Cgb%7CEFC35848%2E1%7C.for.35398-37130.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.35398-37130.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.35398-37130.gi%7C284082062%7Cgb%7CEFC35848%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087626%7Cgb%7CEFC41294%2E1%7C.for.35461-37506.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.35461-37506.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.35461-37506.gi%7C284087626%7Cgb%7CEFC41294%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089694%7Cgb%7CEFC43350%2E1%7C.for.41200-43226.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.41200-43226.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.41200-43226.gi%7C284089694%7Cgb%7CEFC43350%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089398%7Cgb%7CEFC43056%2E1%7C.for.43509-45184.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.43509-45184.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.43509-45184.gi%7C284089398%7Cgb%7CEFC43056%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094642%7Cgb%7CEFC48275%2E1%7C.for.49328-51487.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.49328-51487.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.49328-51487.gi%7C284094642%7Cgb%7CEFC48275%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083741%7Cgb%7CEFC37441%2E1%7C.for.50946-52528.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.50946-52528.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.50946-52528.gi%7C284083741%7Cgb%7CEFC37441%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089583%7Cgb%7CEFC43240%2E1%7C.for.53473-54613.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.53473-54613.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.53473-54613.gi%7C284089583%7Cgb%7CEFC43240%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095256%7Cgb%7CEFC48887%2E1%7C.for.54305-55518.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.54305-55518.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.54305-55518.gi%7C284095256%7Cgb%7CEFC48887%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081631%7Cgb%7CEFC35564%2E1%7C.for.55682-57063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.55682-57063.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.55682-57063.gi%7C284081631%7Cgb%7CEFC35564%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092518%7Cgb%7CEFC46160%2E1%7C.for.57083-58569.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57083-58569.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57083-58569.gi%7C284092518%7Cgb%7CEFC46160%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080970%7Cgb%7CEFC35250%2E1%7C.for.57107-58131.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57107-58131.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57107-58131.gi%7C284080970%7Cgb%7CEFC35250%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092387%7Cgb%7CEFC46029%2E1%7C.for.57110-58599.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57110-58599.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57110-58599.gi%7C284092387%7Cgb%7CEFC46029%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091231%7Cgb%7CEFC44879%2E1%7C.for.57122-58599.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57122-58599.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57122-58599.gi%7C284091231%7Cgb%7CEFC44879%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096309%7Cgb%7CEFC49937%2E1%7C.for.57119-58602.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57119-58602.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57119-58602.gi%7C284096309%7Cgb%7CEFC49937%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086017%7Cgb%7CEFC39696%2E1%7C.for.57122-58626.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57122-58626.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57122-58626.gi%7C284086017%7Cgb%7CEFC39696%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092312%7Cgb%7CEFC45955%2E1%7C.for.66552-68221.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.66552-68221.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.66552-68221.gi%7C284092312%7Cgb%7CEFC45955%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095663%7Cgb%7CEFC49293%2E1%7C.for.73646-75543.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.73646-75543.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.73646-75543.gi%7C284095663%7Cgb%7CEFC49293%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089244%7Cgb%7CEFC42903%2E1%7C.for.75047-77273.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.75047-77273.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.75047-77273.gi%7C284089244%7Cgb%7CEFC42903%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088914%7Cgb%7CEFC42574%2E1%7C.for.81456-82906.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.81456-82906.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.81456-82906.gi%7C284088914%7Cgb%7CEFC42574%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088237%7Cgb%7CEFC41902%2E1%7C.for.87474-88462.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87474-88462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87474-88462.gi%7C284088237%7Cgb%7CEFC41902%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088639%7Cgb%7CEFC42301%2E1%7C.for.87465-88486.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87465-88486.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87465-88486.gi%7C284088639%7Cgb%7CEFC42301%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086665%7Cgb%7CEFC40340%2E1%7C.for.87405-88381.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87405-88381.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87405-88381.gi%7C284086665%7Cgb%7CEFC40340%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086663%7Cgb%7CEFC40338%2E1%7C.for.87462-88381.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87462-88381.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87462-88381.gi%7C284086663%7Cgb%7CEFC40338%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087769%7Cgb%7CEFC41436%2E1%7C.for.87438-88381.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87438-88381.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87438-88381.gi%7C284087769%7Cgb%7CEFC41436%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095431%7Cgb%7CEFC49062%2E1%7C.for.94523-95901.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.94523-95901.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.94523-95901.gi%7C284095431%7Cgb%7CEFC49062%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087201%7Cgb%7CEFC40872%2E1%7C.for.97862-99309.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.97862-99309.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.97862-99309.gi%7C284087201%7Cgb%7CEFC40872%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088832%7Cgb%7CEFC42493%2E1%7C.for.102590-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102590-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102590-104469.gi%7C284088832%7Cgb%7CEFC42493%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089566%7Cgb%7CEFC43223%2E1%7C.for.102560-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104469.gi%7C284089566%7Cgb%7CEFC43223%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091175%7Cgb%7CEFC44823%2E1%7C.for.102545-104466.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104466.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104466.gi%7C284091175%7Cgb%7CEFC44823%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086467%7Cgb%7CEFC40143%2E1%7C.for.102557-104463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102557-104463.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102557-104463.gi%7C284086467%7Cgb%7CEFC40143%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091949%7Cgb%7CEFC45593%2E1%7C.for.102563-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104469.gi%7C284091949%7Cgb%7CEFC45593%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093022%7Cgb%7CEFC46662%2E1%7C.for.102551-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.gi%7C284093022%7Cgb%7CEFC46662%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084913%7Cgb%7CEFC38601%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284084913%7Cgb%7CEFC38601%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091907%7Cgb%7CEFC45551%2E1%7C.for.102551-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.gi%7C284091907%7Cgb%7CEFC45551%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081216%7Cgb%7CEFC35341%2E1%7C.for.102545-103866.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-103866.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-103866.gi%7C284081216%7Cgb%7CEFC35341%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094255%7Cgb%7CEFC47890%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284094255%7Cgb%7CEFC47890%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085698%7Cgb%7CEFC39380%2E1%7C.for.102551-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.gi%7C284085698%7Cgb%7CEFC39380%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085910%7Cgb%7CEFC39590%2E1%7C.for.102554-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-104469.gi%7C284085910%7Cgb%7CEFC39590%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085859%7Cgb%7CEFC39540%2E1%7C.for.102560-104466.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104466.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104466.gi%7C284085859%7Cgb%7CEFC39540%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082408%7Cgb%7CEFC36130%2E1%7C.for.102539-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102539-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102539-104469.gi%7C284082408%7Cgb%7CEFC36130%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084215%7Cgb%7CEFC37910%2E1%7C.for.102563-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104469.gi%7C284084215%7Cgb%7CEFC37910%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082818%7Cgb%7CEFC36529%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284082818%7Cgb%7CEFC36529%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092206%7Cgb%7CEFC45849%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284092206%7Cgb%7CEFC45849%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084133%7Cgb%7CEFC37829%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284084133%7Cgb%7CEFC37829%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093050%7Cgb%7CEFC46689%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284093050%7Cgb%7CEFC46689%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081499%7Cgb%7CEFC35479%2E1%7C.for.102938-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102938-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102938-104469.gi%7C284081499%7Cgb%7CEFC35479%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090387%7Cgb%7CEFC44039%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284090387%7Cgb%7CEFC44039%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083870%7Cgb%7CEFC37569%2E1%7C.for.102545-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.gi%7C284083870%7Cgb%7CEFC37569%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090106%7Cgb%7CEFC43759%2E1%7C.for.102563-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104469.gi%7C284090106%7Cgb%7CEFC43759%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092467%7Cgb%7CEFC46109%2E1%7C.for.102563-104442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104442.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104442.gi%7C284092467%7Cgb%7CEFC46109%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081169%7Cgb%7CEFC35319%2E1%7C.for.103178-104463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103178-104463.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103178-104463.gi%7C284081169%7Cgb%7CEFC35319%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081941%7Cgb%7CEFC35759%2E1%7C.for.102899-104112.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102899-104112.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102899-104112.gi%7C284081941%7Cgb%7CEFC35759%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C7140539%7Cgb%7CAAF37002%2E1%7C.for.102551-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.gi%7C7140539%7Cgb%7CAAF37002%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C41016928%7Csp%7CQ9NJV4%2E1%7CACT1_NAEGR.for.102551-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.gi%7C41016928%7Csp%7CQ9NJV4%2E1%7CACT1_NAEGR.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091080%7Cgb%7CEFC44728%2E1%7C.for.102551-104346.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104346.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104346.gi%7C284091080%7Cgb%7CEFC44728%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081758%7Cgb%7CEFC35638%2E1%7C.for.102899-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102899-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102899-104469.gi%7C284081758%7Cgb%7CEFC35638%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090316%7Cgb%7CEFC43968%2E1%7C.for.102530-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102530-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102530-104469.gi%7C284090316%7Cgb%7CEFC43968%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087026%7Cgb%7CEFC40698%2E1%7C.for.102566-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102566-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102566-104469.gi%7C284087026%7Cgb%7CEFC40698%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085061%7Cgb%7CEFC38748%2E1%7C.for.102557-104451.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102557-104451.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102557-104451.gi%7C284085061%7Cgb%7CEFC38748%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084193%7Cgb%7CEFC37888%2E1%7C.for.102560-104460.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104460.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104460.gi%7C284084193%7Cgb%7CEFC37888%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091169%7Cgb%7CEFC44817%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284091169%7Cgb%7CEFC44817%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089912%7Cgb%7CEFC43567%2E1%7C.for.102554-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-104469.gi%7C284089912%7Cgb%7CEFC43567%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096128%7Cgb%7CEFC49757%2E1%7C.for.102551-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.gi%7C284096128%7Cgb%7CEFC49757%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089027%7Cgb%7CEFC42687%2E1%7C.for.102545-104463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104463.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104463.gi%7C284089027%7Cgb%7CEFC42687%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095858%7Cgb%7CEFC49487%2E1%7C.for.102557-104463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102557-104463.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102557-104463.gi%7C284095858%7Cgb%7CEFC49487%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094965%7Cgb%7CEFC48597%2E1%7C.for.102566-104382.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102566-104382.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102566-104382.gi%7C284094965%7Cgb%7CEFC48597%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089319%7Cgb%7CEFC42977%2E1%7C.for.102938-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102938-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102938-104469.gi%7C284089319%7Cgb%7CEFC42977%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094182%7Cgb%7CEFC47817%2E1%7C.for.103238-104466.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103238-104466.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103238-104466.gi%7C284094182%7Cgb%7CEFC47817%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092093%7Cgb%7CEFC45736%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284092093%7Cgb%7CEFC45736%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081879%7Cgb%7CEFC35716%2E1%7C.for.102899-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102899-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102899-104469.gi%7C284081879%7Cgb%7CEFC35716%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096899%7Cgb%7CEFC50526%2E1%7C.for.102554-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-104469.gi%7C284096899%7Cgb%7CEFC50526%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089740%7Cgb%7CEFC43396%2E1%7C.for.102545-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.gi%7C284089740%7Cgb%7CEFC43396%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089378%7Cgb%7CEFC43036%2E1%7C.for.102560-104442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104442.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104442.gi%7C284089378%7Cgb%7CEFC43036%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092856%7Cgb%7CEFC46496%2E1%7C.for.102545-104442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104442.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104442.gi%7C284092856%7Cgb%7CEFC46496%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094994%7Cgb%7CEFC48626%2E1%7C.for.102563-104463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104463.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104463.gi%7C284094994%7Cgb%7CEFC48626%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087839%7Cgb%7CEFC41506%2E1%7C.for.102545-104463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104463.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104463.gi%7C284087839%7Cgb%7CEFC41506%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083654%7Cgb%7CEFC37355%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284083654%7Cgb%7CEFC37355%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096006%7Cgb%7CEFC49635%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284096006%7Cgb%7CEFC49635%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085784%7Cgb%7CEFC39465%2E1%7C.for.102545-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.gi%7C284085784%7Cgb%7CEFC39465%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094441%7Cgb%7CEFC48075%2E1%7C.for.102545-104463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104463.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104463.gi%7C284094441%7Cgb%7CEFC48075%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093507%7Cgb%7CEFC47145%2E1%7C.for.102545-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.gi%7C284093507%7Cgb%7CEFC47145%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091207%7Cgb%7CEFC44855%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284091207%7Cgb%7CEFC44855%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090413%7Cgb%7CEFC44065%2E1%7C.for.102554-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-104469.gi%7C284090413%7Cgb%7CEFC44065%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093025%7Cgb%7CEFC46665%2E1%7C.for.102545-104073.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104073.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104073.gi%7C284093025%7Cgb%7CEFC46665%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090925%7Cgb%7CEFC44574%2E1%7C.for.102560-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104469.gi%7C284090925%7Cgb%7CEFC44574%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096977%7Cgb%7CEFC50604%2E1%7C.for.102674-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102674-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102674-104469.gi%7C284096977%7Cgb%7CEFC50604%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086629%7Cgb%7CEFC40304%2E1%7C.for.102551-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.gi%7C284086629%7Cgb%7CEFC40304%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095925%7Cgb%7CEFC49554%2E1%7C.for.102545-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.gi%7C284095925%7Cgb%7CEFC49554%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084108%7Cgb%7CEFC37804%2E1%7C.for.102542-103899.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-103899.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-103899.gi%7C284084108%7Cgb%7CEFC37804%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097217%7Cgb%7CEFC50844%2E1%7C.for.102551-104463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104463.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104463.gi%7C284097217%7Cgb%7CEFC50844%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087564%7Cgb%7CEFC41233%2E1%7C.for.105921-107575.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105921-107575.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105921-107575.gi%7C284087564%7Cgb%7CEFC41233%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083763%7Cgb%7CEFC37463%2E1%7C.for.105939-107563.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105939-107563.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105939-107563.gi%7C284083763%7Cgb%7CEFC37463%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087027%7Cgb%7CEFC40699%2E1%7C.for.105870-107503.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105870-107503.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105870-107503.gi%7C284087027%7Cgb%7CEFC40699%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093481%7Cgb%7CEFC47119%2E1%7C.for.105897-107503.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105897-107503.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105897-107503.gi%7C284093481%7Cgb%7CEFC47119%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087852%7Cgb%7CEFC41519%2E1%7C.for.105918-107479.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105918-107479.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105918-107479.gi%7C284087852%7Cgb%7CEFC41519%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083950%7Cgb%7CEFC37648%2E1%7C.for.105891-107584.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105891-107584.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105891-107584.gi%7C284083950%7Cgb%7CEFC37648%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084476%7Cgb%7CEFC38168%2E1%7C.for.105891-107422.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105891-107422.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105891-107422.gi%7C284084476%7Cgb%7CEFC38168%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088746%7Cgb%7CEFC42408%2E1%7C.for.105876-107506.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105876-107506.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105876-107506.gi%7C284088746%7Cgb%7CEFC42408%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095404%7Cgb%7CEFC49035%2E1%7C.for.124756-128537.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.124756-128537.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.124756-128537.gi%7C284095404%7Cgb%7CEFC49035%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090058%7Cgb%7CEFC43712%2E1%7C.for.129157-130455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.129157-130455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.129157-130455.gi%7C284090058%7Cgb%7CEFC43712%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095332%7Cgb%7CEFC48963%2E1%7C.for.132784-134747.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.132784-134747.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.132784-134747.gi%7C284095332%7Cgb%7CEFC48963%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093977%7Cgb%7CEFC47613%2E1%7C.for.139882-141374.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139882-141374.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139882-141374.gi%7C284093977%7Cgb%7CEFC47613%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088986%7Cgb%7CEFC42646%2E1%7C.for.139876-141374.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139876-141374.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139876-141374.gi%7C284088986%7Cgb%7CEFC42646%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084480%7Cgb%7CEFC38172%2E1%7C.for.140935-142691.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.140935-142691.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.140935-142691.gi%7C284084480%7Cgb%7CEFC38172%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084385%7Cgb%7CEFC38078%2E1%7C.for.140935-142691.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.140935-142691.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.140935-142691.gi%7C284084385%7Cgb%7CEFC38078%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093250%7Cgb%7CEFC46889%2E1%7C.for.144298-145361.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.144298-145361.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.144298-145361.gi%7C284093250%7Cgb%7CEFC46889%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.154523-157683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154523-157683.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154523-157683.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.for.154520-157728.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154520-157728.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154520-157728.gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.for.154493-157671.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154493-157671.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154493-157671.gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.for.154550-157671.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154550-157671.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154550-157671.gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088147%7Cgb%7CEFC41812%2E1%7C.for.154784-157671.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154784-157671.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154784-157671.gi%7C284088147%7Cgb%7CEFC41812%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.for.154781-157494.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154781-157494.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154781-157494.gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084257%7Cgb%7CEFC37951%2E1%7C.for.154544-158337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154544-158337.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154544-158337.gi%7C284084257%7Cgb%7CEFC37951%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.for.154526-157821.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154526-157821.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154526-157821.gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.for.154514-157683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154514-157683.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154514-157683.gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.for.154550-157683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154550-157683.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154550-157683.gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087408%7Cgb%7CEFC41078%2E1%7C.for.154526-157671.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154526-157671.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154526-157671.gi%7C284087408%7Cgb%7CEFC41078%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084506%7Cgb%7CEFC38198%2E1%7C.for.154550-157707.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154550-157707.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154550-157707.gi%7C284084506%7Cgb%7CEFC38198%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094023%7Cgb%7CEFC47658%2E1%7C.for.154526-157677.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154526-157677.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154526-157677.gi%7C284094023%7Cgb%7CEFC47658%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.for.154940-157443.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154940-157443.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154940-157443.gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091599%7Cgb%7CEFC45245%2E1%7C.for.154628-157437.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154628-157437.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154628-157437.gi%7C284091599%7Cgb%7CEFC45245%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.for.154991-157653.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154991-157653.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154991-157653.gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097262%7Cgb%7CEFC50889%2E1%7C.for.161178-163191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.161178-163191.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.161178-163191.gi%7C284097262%7Cgb%7CEFC50889%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096748%7Cgb%7CEFC50375%2E1%7C.for.164142-165611.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.164142-165611.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.164142-165611.gi%7C284096748%7Cgb%7CEFC50375%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095896%7Cgb%7CEFC49525%2E1%7C.for.164151-165614.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.164151-165614.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.164151-165614.gi%7C284095896%7Cgb%7CEFC49525%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094517%7Cgb%7CEFC48151%2E1%7C.for.167331-168490.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167331-168490.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167331-168490.gi%7C284094517%7Cgb%7CEFC48151%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090204%7Cgb%7CEFC43857%2E1%7C.for.168021-169063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.168021-169063.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.168021-169063.gi%7C284090204%7Cgb%7CEFC43857%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085110%7Cgb%7CEFC38796%2E1%7C.for.180033-181667.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.180033-181667.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.180033-181667.gi%7C284085110%7Cgb%7CEFC38796%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089126%7Cgb%7CEFC42785%2E1%7C.for.184670-185961.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.184670-185961.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.184670-185961.gi%7C284089126%7Cgb%7CEFC42785%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085008%7Cgb%7CEFC38695%2E1%7C.for.184670-185745.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.184670-185745.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.184670-185745.gi%7C284085008%7Cgb%7CEFC38695%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084707%7Cgb%7CEFC38397%2E1%7C.for.187068-188147.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.187068-188147.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.187068-188147.gi%7C284084707%7Cgb%7CEFC38397%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089061%7Cgb%7CEFC42721%2E1%7C.for.188067-192365.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.188067-192365.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.188067-192365.gi%7C284089061%7Cgb%7CEFC42721%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089121%7Cgb%7CEFC42780%2E1%7C.for.197096-200432.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.197096-200432.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.197096-200432.gi%7C284089121%7Cgb%7CEFC42780%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089246%7Cgb%7CEFC42905%2E1%7C.for.202027-204158.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.202027-204158.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.202027-204158.gi%7C284089246%7Cgb%7CEFC42905%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094815%7Cgb%7CEFC48448%2E1%7C.for.205605-208688.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.205605-208688.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.205605-208688.gi%7C284094815%7Cgb%7CEFC48448%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086419%7Cgb%7CEFC40096%2E1%7C.for.209039-216557.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.209039-216557.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.209039-216557.gi%7C284086419%7Cgb%7CEFC40096%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:43 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:43 now processing 0 total clusters:43 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:43 now processing 0 total clusters:43 now processing 0 ...processing 0 of 64 ...processing 1 of 64 ...processing 2 of 64 ...processing 3 of 64 ...processing 4 of 64 ...processing 5 of 64 ...processing 6 of 64 ...processing 7 of 64 ...processing 8 of 64 ...processing 9 of 64 ...processing 10 of 64 ...processing 11 of 64 ...processing 12 of 64 ...processing 13 of 64 ...processing 14 of 64 ...processing 15 of 64 ...processing 16 of 64 ...processing 17 of 64 ...processing 18 of 64 ...processing 19 of 64 ...processing 20 of 64 ...processing 21 of 64 ...processing 22 of 64 ...processing 23 of 64 ...processing 24 of 64 ...processing 25 of 64 ...processing 26 of 64 ...processing 27 of 64 ...processing 28 of 64 ...processing 29 of 64 ...processing 30 of 64 ...processing 31 of 64 ...processing 32 of 64 ...processing 33 of 64 ...processing 34 of 64 ...processing 35 of 64 ...processing 36 of 64 ...processing 37 of 64 ...processing 38 of 64 ...processing 39 of 64 ...processing 40 of 64 ...processing 41 of 64 ...processing 42 of 64 ...processing 43 of 64 ...processing 44 of 64 ...processing 45 of 64 ...processing 46 of 64 ...processing 47 of 64 ...processing 48 of 64 ...processing 49 of 64 ...processing 50 of 64 ...processing 51 of 64 ...processing 52 of 64 ...processing 53 of 64 ...processing 54 of 64 ...processing 55 of 64 ...processing 56 of 64 ...processing 57 of 64 ...processing 58 of 64 ...processing 59 of 64 ...processing 60 of 64 ...processing 61 of 64 ...processing 62 of 64 ...processing 63 of 64 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:43 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:43 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 62 ...processing 1 of 62 ...processing 2 of 62 ...processing 3 of 62 ...processing 4 of 62 ...processing 5 of 62 ...processing 6 of 62 ...processing 7 of 62 ...processing 8 of 62 ...processing 9 of 62 ...processing 10 of 62 ...processing 11 of 62 ...processing 12 of 62 ...processing 13 of 62 ...processing 14 of 62 ...processing 15 of 62 ...processing 16 of 62 ...processing 17 of 62 ...processing 18 of 62 ...processing 19 of 62 ...processing 20 of 62 ...processing 21 of 62 ...processing 22 of 62 ...processing 23 of 62 ...processing 24 of 62 ...processing 25 of 62 ...processing 26 of 62 ...processing 27 of 62 ...processing 28 of 62 ...processing 29 of 62 ...processing 30 of 62 ...processing 31 of 62 ...processing 32 of 62 ...processing 33 of 62 ...processing 34 of 62 ...processing 35 of 62 ...processing 36 of 62 ...processing 37 of 62 ...processing 38 of 62 ...processing 39 of 62 ...processing 40 of 62 ...processing 41 of 62 ...processing 42 of 62 ...processing 43 of 62 ...processing 44 of 62 ...processing 45 of 62 ...processing 46 of 62 ...processing 47 of 62 ...processing 48 of 62 ...processing 49 of 62 ...processing 50 of 62 ...processing 51 of 62 ...processing 52 of 62 ...processing 53 of 62 ...processing 54 of 62 ...processing 55 of 62 ...processing 56 of 62 ...processing 57 of 62 ...processing 58 of 62 ...processing 59 of 62 ...processing 60 of 62 ...processing 61 of 62 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 ...processing 0 of 21 ...processing 1 of 21 ...processing 2 of 21 ...processing 3 of 21 ...processing 4 of 21 ...processing 5 of 21 ...processing 6 of 21 ...processing 7 of 21 ...processing 8 of 21 ...processing 9 of 21 ...processing 10 of 21 ...processing 11 of 21 ...processing 12 of 21 ...processing 13 of 21 ...processing 14 of 21 ...processing 15 of 21 ...processing 16 of 21 ...processing 17 of 21 ...processing 18 of 21 ...processing 19 of 21 ...processing 20 of 21 ...trimming the rest total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 18 ...processing 1 of 18 ...processing 2 of 18 ...processing 3 of 18 ...processing 4 of 18 ...processing 5 of 18 ...processing 6 of 18 ...processing 7 of 18 ...processing 8 of 18 ...processing 9 of 18 ...processing 10 of 18 ...processing 11 of 18 ...processing 12 of 18 ...processing 13 of 18 ...processing 14 of 18 ...processing 15 of 18 ...processing 16 of 18 ...processing 17 of 18 ...processing 0 of 20 ...processing 1 of 20 ...processing 2 of 20 ...processing 3 of 20 ...processing 4 of 20 ...processing 5 of 20 ...processing 6 of 20 ...processing 7 of 20 ...processing 8 of 20 ...processing 9 of 20 ...processing 10 of 20 ...processing 11 of 20 ...processing 12 of 20 ...processing 13 of 20 ...processing 14 of 20 ...processing 15 of 20 ...processing 16 of 20 ...processing 17 of 20 ...processing 18 of 20 ...processing 19 of 20 ...trimming the rest ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 20 ...processing 1 of 20 ...processing 2 of 20 ...processing 3 of 20 ...processing 4 of 20 ...processing 5 of 20 ...processing 6 of 20 ...processing 7 of 20 ...processing 8 of 20 ...processing 9 of 20 ...processing 10 of 20 ...processing 11 of 20 ...processing 12 of 20 ...processing 13 of 20 ...processing 14 of 20 ...processing 15 of 20 ...processing 16 of 20 ...processing 17 of 20 ...processing 18 of 20 ...processing 19 of 20 ...trimming the rest ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.2005-2807.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.2005-2807.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.2005-2807.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.5530-7787.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.5530-7787.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.5530-7787.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.10288-11233.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.10288-11233.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.10288-11233.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.12116-15315.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.12116-15315.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.12116-15315.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.19006-20102.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.19006-20102.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.19006-20102.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.21536-22595.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.21536-22595.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.21536-22595.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.25950-27655.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.25950-27655.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.25950-27655.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.27857-31715.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.27857-31715.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.27857-31715.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.35586-37309.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.35586-37309.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.35586-37309.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.40730-41618.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.40730-41618.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.40730-41618.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.43708-45000.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.43708-45000.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.43708-45000.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.49527-52473.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.49527-52473.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.49527-52473.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.53672-54413.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.53672-54413.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.53672-54413.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.54492-55318.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.54492-55318.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.54492-55318.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.55881-56863.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.55881-56863.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.55881-56863.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.57280-60097.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.57280-60097.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.57280-60097.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.66697-68021.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.66697-68021.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.66697-68021.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.69158-70100.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.69158-70100.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.69158-70100.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.78085-79067.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.78085-79067.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.78085-79067.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.80532-81487.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.80532-81487.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.80532-81487.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.93822-94850.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.93822-94850.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.93822-94850.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.101415-102357.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.101415-102357.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.101415-102357.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.102627-104449.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.102627-104449.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.102627-104449.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.108513-109328.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.108513-109328.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.108513-109328.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.111791-113231.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.111791-113231.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.111791-113231.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.113930-114726.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.113930-114726.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.113930-114726.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.124943-129695.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.124943-129695.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.124943-129695.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.132983-134579.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.132983-134579.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.132983-134579.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.138571-139595.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.138571-139595.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.138571-139595.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.141080-142508.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.141080-142508.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.141080-142508.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.143385-144467.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.143385-144467.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.143385-144467.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.154722-157471.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.154722-157471.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.154722-157471.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.164341-165667.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.164341-165667.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.164341-165667.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.167354-168389.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.167354-168389.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.167354-168389.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.168992-169495.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.168992-169495.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.168992-169495.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.174395-175263.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.174395-175263.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.174395-175263.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.178304-180211.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.178304-180211.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.178304-180211.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.180232-181471.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.180232-181471.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.180232-181471.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.184599-185803.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.184599-185803.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.184599-185803.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.188266-192165.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.188266-192165.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.188266-192165.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/40_0.209238-216357.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/40_0.209238-216357.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/40_0.209238-216357.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/41_0.8368-9559.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/41_0.8368-9559.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/41_0.8368-9559.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/42_0.15647-16209.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/42_0.15647-16209.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/42_0.15647-16209.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/43_0.19709-21488.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/43_0.19709-21488.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/43_0.19709-21488.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/44_0.31442-32094.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/44_0.31442-32094.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/44_0.31442-32094.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/45_0.32607-33730.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/45_0.32607-33730.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/45_0.32607-33730.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/46_0.36998-38200.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/46_0.36998-38200.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/46_0.36998-38200.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/47_0.41399-43026.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/47_0.41399-43026.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/47_0.41399-43026.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/48_0.46534-49127.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/48_0.46534-49127.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/48_0.46534-49127.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/49_0.60601-62837.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/49_0.60601-62837.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/49_0.60601-62837.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/50_0.71180-72791.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/50_0.71180-72791.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/50_0.71180-72791.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/51_0.73817-77145.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/51_0.73817-77145.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/51_0.73817-77145.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/52_0.81575-82706.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/52_0.81575-82706.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/52_0.81575-82706.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/53_0.94722-95805.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/53_0.94722-95805.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/53_0.94722-95805.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/54_0.96303-98215.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/54_0.96303-98215.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/54_0.96303-98215.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/55_0.98398-99325.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/55_0.98398-99325.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/55_0.98398-99325.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/56_0.102756-103291.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/56_0.102756-103291.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/56_0.102756-103291.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/57_0.103462-104351.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/57_0.103462-104351.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/57_0.103462-104351.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/58_0.106037-107477.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/58_0.106037-107477.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/58_0.106037-107477.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/59_0.109445-110094.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/59_0.109445-110094.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/59_0.109445-110094.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/60_0.129342-130265.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/60_0.129342-130265.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/60_0.129342-130265.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/61_0.139478-141218.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/61_0.139478-141218.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/61_0.139478-141218.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/62_0.142324-143297.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/62_0.142324-143297.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/62_0.142324-143297.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/63_0.144390-145272.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/63_0.144390-145272.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/63_0.144390-145272.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/64_0.151376-152918.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/64_0.151376-152918.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/64_0.151376-152918.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/65_0.161368-163003.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/65_0.161368-163003.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/65_0.161368-163003.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/66_0.166496-167680.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/66_0.166496-167680.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/66_0.166496-167680.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/67_0.168050-168863.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/67_0.168050-168863.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/67_0.168050-168863.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/68_0.172890-173863.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/68_0.172890-173863.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/68_0.172890-173863.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/69_0.175424-178257.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/69_0.175424-178257.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/69_0.175424-178257.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/70_0.181713-183091.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/70_0.181713-183091.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/70_0.181713-183091.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/71_0.186218-187151.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/71_0.186218-187151.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/71_0.186218-187151.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/72_0.187267-187947.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/72_0.187267-187947.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/72_0.187267-187947.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/73_0.191838-193043.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/73_0.191838-193043.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/73_0.191838-193043.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/74_0.195498-196803.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/74_0.195498-196803.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/74_0.195498-196803.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/75_0.197295-200760.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/75_0.197295-200760.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/75_0.197295-200760.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/76_0.201498-203971.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/76_0.201498-203971.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/76_0.201498-203971.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/77_0.205804-208491.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/77_0.205804-208491.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/77_0.205804-208491.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C20 Length: 38198 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:45 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:39 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:32 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:47 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:32 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:53 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:33 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:46 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:43 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:43 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:6 current j:0 j_size:6 current j:1 j_size:6 current j:2 j_size:6 current j:3 j_size:6 current j:4 j_size:6 current j:5 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C20.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C20.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18583%7Cnpad-.for.1604-3053.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1604-3053.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1604-3053.Ar_EST_120301b_rep_c18583%7Cnpad-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7720%7Ccfw16-.for.1383-2872.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1383-2872.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1383-2872.Ar_EST_120301b_rep_c7720%7Ccfw16-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19891%7Cxotch.for.707-2213.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.707-2213.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.707-2213.Ar_EST_120301b_c19891%7Cxotch.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11264%7Cfr663913.for.1286-2855.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1286-2855.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1286-2855.Ar_EST_120301b_rep_c11264%7Cfr663913.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18557%7Chypothetical.for.708-2095.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.708-2095.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.708-2095.Ar_EST_120301b_c18557%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19899%7Cccfh.for.1605-3040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1605-3040.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1605-3040.Ar_EST_120301b_rep_c19899%7Cccfh.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19932%7Cccfh.for.1559-2870.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1559-2870.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1559-2870.Ar_EST_120301b_rep_c19932%7Cccfh.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10247%7Cccza.for.1600-2933.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1600-2933.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1600-2933.Ar_EST_120301b_rep_c10247%7Cccza.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20330%7Chypothetical.for.837-1940.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.837-1940.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.837-1940.Ar_EST_120301b_rep_c20330%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12661%7C---NA---.for.5097-6432.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.5097-6432.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.5097-6432.Ar_EST_120301b_c12661%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17581%7Cdnaj.for.12404-13615.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.12404-13615.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.12404-13615.Ar_EST_120301b_c17581%7Cdnaj.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2840%7C---NA---.for.13023-14330.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.13023-14330.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.13023-14330.Ar_EST_120301b_c2840%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9108%7Caj495322.for.14219-15252.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.14219-15252.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.14219-15252.Ar_EST_120301b_c9108%7Caj495322.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12145%7Cfq013894.for.21499-22670.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.21499-22670.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.21499-22670.Ar_EST_120301b_c12145%7Cfq013894.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10994%7Cct751907.for.22605-23506.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.22605-23506.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.22605-23506.Ar_EST_120301b_c10994%7Cct751907.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17786%7Ckr3b.for.29517-30923.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.29517-30923.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.29517-30923.Ar_EST_120301b_c17786%7Ckr3b.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10857%7C---NA---.for.30343-31585.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.30343-31585.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.30343-31585.Ar_EST_120301b_c10857%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15255%7Cresponse.for.37377-38198.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.37377-38198.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.37377-38198.Ar_EST_120301b_c15255%7Cresponse.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13487%7Cseed.for.37227-38178.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.37227-38178.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.37227-38178.Ar_EST_120301b_c13487%7Cseed.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:9 now processing 0 total clusters:9 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:6 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:7 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:3 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:7 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:7 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:4 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:4 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:7 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:6 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:8 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091150%7Cgb%7CEFC44798%2E1%7C.for.8240-10218.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.8240-10218.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.8240-10218.gi%7C284091150%7Cgb%7CEFC44798%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088477%7Cgb%7CEFC42140%2E1%7C.for.9487-12538.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.9487-12538.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.9487-12538.gi%7C284088477%7Cgb%7CEFC42140%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... cleaning clusters.... total clusters:2 now processing 0 total clusters:2 now processing 0 cleaning clusters.... total clusters:1 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:6 now processing 0 total clusters:6 now processing 0 total clusters:6 now processing 0 total clusters:6 now processing 0 total clusters:6 now processing 0 total clusters:6 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:5 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:5 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:5 now processing 0 total clusters:5 now processing 0 total clusters:5 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.1494-2766.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.1494-2766.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.1494-2766.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.8439-10018.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.8439-10018.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.8439-10018.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.13222-14130.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.13222-14130.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.13222-14130.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.21660-22549.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.21660-22549.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.21660-22549.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.29658-30723.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.29658-30723.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.29658-30723.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.867-2865.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.867-2865.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.867-2865.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.5296-6232.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.5296-6232.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.5296-6232.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.9686-12338.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.9686-12338.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.9686-12338.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.37550-38198.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.37550-38198.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.37550-38198.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C21 Length: 24727 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C21.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C21.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5800%7Cprotein.for.2340-4098.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.2340-4098.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.2340-4098.Ar_EST_120301b_rep_c5800%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4503%7Cpredicted.for.6316-7743.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.6316-7743.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.6316-7743.Ar_EST_120301b_rep_c4503%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17043%7Ccpad-.for.6339-7461.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.6339-7461.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.6339-7461.Ar_EST_120301b_rep_c17043%7Ccpad-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17466%7C---NA---.for.7916-8809.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.7916-8809.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.7916-8809.Ar_EST_120301b_c17466%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14567%7Cvacuolar.for.9221-10207.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.9221-10207.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.9221-10207.Ar_EST_120301b_c14567%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3574%7Cankyrin.for.9580-11322.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.9580-11322.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.9580-11322.Ar_EST_120301b_c3574%7Cankyrin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10050%7Cunnamed.for.11732-13128.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.11732-13128.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.11732-13128.Ar_EST_120301b_c10050%7Cunnamed.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16424%7Canolis.for.11685-13057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.11685-13057.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.11685-13057.Ar_EST_120301b_c16424%7Canolis.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20139%7Cproteasome.for.13952-15118.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.13952-15118.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.13952-15118.Ar_EST_120301b_rep_c20139%7Cproteasome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13540%7Cproteasome.for.14127-15285.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.14127-15285.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.14127-15285.Ar_EST_120301b_rep_c13540%7Cproteasome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17751%7Cproteasome.for.14041-15068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.14041-15068.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.14041-15068.Ar_EST_120301b_rep_c17751%7Cproteasome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4249%7Cprotein.for.13843-15445.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.13843-15445.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.13843-15445.Ar_EST_120301b_rep_c4249%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5673%7Cprotein.for.13889-15485.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.13889-15485.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.13889-15485.Ar_EST_120301b_rep_c5673%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18370%7Cgadus.for.17163-18491.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.17163-18491.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.17163-18491.Ar_EST_120301b_c18370%7Cgadus.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19634%7Cvirulent.for.19726-21273.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.19726-21273.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.19726-21273.Ar_EST_120301b_c19634%7Cvirulent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8853%7Ccopper.for.19140-21075.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.19140-21075.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.19140-21075.Ar_EST_120301b_c8853%7Ccopper.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1070%7Cdiguanylate.for.21034-22812.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.21034-22812.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.21034-22812.120301b_Contig1070%7Cdiguanylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1904%7Cprotein.for.22134-23516.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.22134-23516.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.22134-23516.Ar_EST_120301b_c1904%7Cprotein.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 total clusters:12 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:4 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:3 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:4 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:7 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:1 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095582%7Cgb%7CEFC49212%2E1%7C.for.2381-4068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.2381-4068.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.2381-4068.gi%7C284095582%7Cgb%7CEFC49212%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094662%7Cgb%7CEFC48295%2E1%7C.for.7742-9864.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.7742-9864.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.7742-9864.gi%7C284094662%7Cgb%7CEFC48295%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084498%7Cgb%7CEFC38190%2E1%7C.for.11338-12284.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.11338-12284.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.11338-12284.gi%7C284084498%7Cgb%7CEFC38190%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092281%7Cgb%7CEFC45924%2E1%7C.for.13885-15347.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.13885-15347.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.13885-15347.gi%7C284092281%7Cgb%7CEFC45924%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:3 now processing 0 total clusters:3 now processing 0 total clusters:3 now processing 0 in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:3 now processing 0 total clusters:3 now processing 0 total clusters:3 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:5 now processing 0 total clusters:5 now processing 0 total clusters:5 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:5 now processing 0 total clusters:5 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.2539-3898.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.2539-3898.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.2539-3898.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.7941-11126.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.7941-11126.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.7941-11126.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.19260-20889.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.19260-20889.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.19260-20889.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.21233-23332.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.21233-23332.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.21233-23332.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.6512-7543.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.6512-7543.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.6512-7543.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.11878-12928.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.11878-12928.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.11878-12928.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.14042-15285.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.14042-15285.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.14042-15285.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.17362-18291.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.17362-18291.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.17362-18291.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C22 Length: 180468 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C22.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C22.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15895%7Cgm-c1079.for.1-833.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.1-833.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.1-833.Ar_EST_120301b_c15895%7Cgm-c1079.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8111%7Ccbwo.for.3047-4827.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.3047-4827.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.3047-4827.Ar_EST_120301b_c8111%7Ccbwo.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15281%7Cche.for.4950-6277.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.4950-6277.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.4950-6277.Ar_EST_120301b_c15281%7Cche.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13217%7C020709ofm1010015ht.for.10660-11968.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.10660-11968.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.10660-11968.Ar_EST_120301b_c13217%7C020709ofm1010015ht.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17472%7Cfgp.for.14234-15465.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.14234-15465.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.14234-15465.Ar_EST_120301b_c17472%7Cfgp.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2415%7Cdomain-containing.for.14389-16400.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.14389-16400.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.14389-16400.Ar_EST_120301b_c2415%7Cdomain-containing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2973%7Crho.for.15426-17284.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.15426-17284.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.15426-17284.Ar_EST_120301b_c2973%7Crho.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3263%7Cnuphar.for.15935-17294.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.15935-17294.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.15935-17294.Ar_EST_120301b_c3263%7Cnuphar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1203%7Cthioredoxin.for.19166-20557.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.19166-20557.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.19166-20557.Ar_EST_120301b_c1203%7Cthioredoxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11684%7Ccopper.for.20132-21528.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.20132-21528.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.20132-21528.Ar_EST_120301b_c11684%7Ccopper.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16190%7C---NA---.for.23672-24979.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.23672-24979.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.23672-24979.Ar_EST_120301b_c16190%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17194%7Cpredicted.for.26296-27953.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.26296-27953.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.26296-27953.Ar_EST_120301b_c17194%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1297%7Csolute.for.29407-30960.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.29407-30960.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.29407-30960.Ar_EST_120301b_c1297%7Csolute.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10700%7Csolute.for.30213-31391.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30213-31391.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30213-31391.Ar_EST_120301b_c10700%7Csolute.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12857%7Cprotein.for.30758-31969.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30758-31969.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30758-31969.Ar_EST_120301b_c12857%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18582%7Cprotein.for.30757-32943.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30757-32943.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30757-32943.Ar_EST_120301b_c18582%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4666%7Crho.for.32331-34513.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.32331-34513.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.32331-34513.Ar_EST_120301b_rep_c4666%7Crho.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6449%7Cdomain-containing.for.32564-34314.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.32564-34314.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.32564-34314.Ar_EST_120301b_rep_c6449%7Cdomain-containing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4579%7C1-acyl-sn-glycerol-3-phosphate.for.33988-35641.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.33988-35641.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.33988-35641.Ar_EST_120301b_rep_c4579%7C1-acyl-sn-glycerol-3-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3473%7Cprotein.for.35861-38720.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.35861-38720.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.35861-38720.Ar_EST_120301b_c3473%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11453%7Couter.for.38483-39907.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.38483-39907.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.38483-39907.Ar_EST_120301b_c11453%7Couter.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12870%7Couter.for.39201-40965.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.39201-40965.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.39201-40965.Ar_EST_120301b_c12870%7Couter.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10342%7C---NA---.for.40424-42250.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.40424-42250.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.40424-42250.Ar_EST_120301b_c10342%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14468%7Cprotein.for.43627-44751.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.43627-44751.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.43627-44751.Ar_EST_120301b_c14468%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12413%7Crp.for.49689-51198.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.49689-51198.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.49689-51198.Ar_EST_120301b_c12413%7Crp.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16757%7Cby805517.for.51678-52789.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.51678-52789.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.51678-52789.Ar_EST_120301b_c16757%7Cby805517.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13658%7Cats1.for.56100-57631.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.56100-57631.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.56100-57631.Ar_EST_120301b_c13658%7Cats1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15371%7Cprobable.for.55732-57167.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.55732-57167.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.55732-57167.Ar_EST_120301b_c15371%7Cprobable.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19612%7Cats1.for.56807-57882.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.56807-57882.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.56807-57882.Ar_EST_120301b_c19612%7Cats1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18250%7Calpha.for.57860-59681.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.57860-59681.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.57860-59681.Ar_EST_120301b_c18250%7Calpha.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17288%7Cusda-fp_187010.for.59310-60593.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.59310-60593.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.59310-60593.Ar_EST_120301b_c17288%7Cusda-fp_187010.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4677%7Celongation.for.62390-64153.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.62390-64153.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.62390-64153.Ar_EST_120301b_rep_c4677%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2115%7Cacyl.for.64729-66060.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.64729-66060.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.64729-66060.Ar_EST_120301b_c2115%7Cacyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12587%7Cdolichyl-phosphate.for.65716-66849.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.65716-66849.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.65716-66849.Ar_EST_120301b_c12587%7Cdolichyl-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2089%7Cdolichyl-phosphate.for.65880-67602.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.65880-67602.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.65880-67602.Ar_EST_120301b_c2089%7Cdolichyl-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12186%7Crwp-rk.for.67114-68491.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.67114-68491.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.67114-68491.Ar_EST_120301b_c12186%7Crwp-rk.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15048%7Cnih_xgc_tropbrn3.for.67816-69083.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.67816-69083.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.67816-69083.Ar_EST_120301b_c15048%7Cnih_xgc_tropbrn3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig91%7Cglutamine-fructose-6-phosphate.for.68451-71176.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.68451-71176.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.68451-71176.120301b_Contig91%7Cglutamine-fructose-6-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c875%7Cglucosamine--fructose-6-phosphate.for.69005-71325.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.69005-71325.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.69005-71325.Ar_EST_120301b_c875%7Cglucosamine--fructose-6-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10225%7Cglutamine-fructose-6-phosphate.for.69487-70699.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.69487-70699.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.69487-70699.Ar_EST_120301b_rep_c10225%7Cglutamine-fructose-6-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13849%7C---NA---.for.70740-72086.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.70740-72086.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.70740-72086.Ar_EST_120301b_c13849%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig561%7Cpredicted.for.72048-73967.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.72048-73967.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.72048-73967.120301b_Contig561%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10241%7Cbtb.for.74150-75505.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.74150-75505.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.74150-75505.Ar_EST_120301b_c10241%7Cbtb.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18380%7Cprotein.for.78688-79987.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.78688-79987.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.78688-79987.Ar_EST_120301b_c18380%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11068%7Ccaof_daphnia_pulex_log50_library_12.for.82440-83981.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.82440-83981.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.82440-83981.Ar_EST_120301b_c11068%7Ccaof_daphnia_pulex_log50_library_12.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig150%7Cpas.for.85931-87952.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.85931-87952.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.85931-87952.120301b_Contig150%7Cpas.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15760%7C---NA---.for.87182-88494.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.87182-88494.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.87182-88494.Ar_EST_120301b_c15760%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9718%7Cprotein.for.89190-90455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.89190-90455.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.89190-90455.Ar_EST_120301b_c9718%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11290%7Cgtpase.for.102845-104156.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102845-104156.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102845-104156.Ar_EST_120301b_c11290%7Cgtpase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13678%7Cendonuclease.for.105562-106984.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.105562-106984.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.105562-106984.Ar_EST_120301b_c13678%7Cendonuclease.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2395%7Cprotein.for.108892-110254.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.108892-110254.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.108892-110254.Ar_EST_120301b_c2395%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16257%7Cyeats.for.110089-111457.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.110089-111457.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.110089-111457.Ar_EST_120301b_c16257%7Cyeats.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16468%7Cest.for.110078-111244.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.110078-111244.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.110078-111244.Ar_EST_120301b_c16468%7Cest.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14583%7Chypothetical.for.111800-113156.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.111800-113156.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.111800-113156.Ar_EST_120301b_c14583%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19785%7Cglucan.for.114526-115915.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.114526-115915.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.114526-115915.Ar_EST_120301b_c19785%7Cglucan.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20171%7Cglucan.for.114230-115683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.114230-115683.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.114230-115683.Ar_EST_120301b_c20171%7Cglucan.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10824%7Cglucan.for.114190-115490.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.114190-115490.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.114190-115490.Ar_EST_120301b_c10824%7Cglucan.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11969%7CPREDICTED%3A.for.115347-116810.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.115347-116810.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.115347-116810.Ar_EST_120301b_c11969%7CPREDICTED%3A.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14936%7Cring.for.116229-117480.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.116229-117480.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.116229-117480.Ar_EST_120301b_c14936%7Cring.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1269%7Caplysia.for.118022-119337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.118022-119337.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.118022-119337.Ar_EST_120301b_c1269%7Caplysia.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12415%7Cpredicted.for.122628-123880.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.122628-123880.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.122628-123880.Ar_EST_120301b_c12415%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17487%7Calpha.for.123103-124405.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.123103-124405.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.123103-124405.Ar_EST_120301b_c17487%7Calpha.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17006%7Cchromosome.for.123729-124995.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.123729-124995.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.123729-124995.Ar_EST_120301b_c17006%7Cchromosome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12054%7C020304kaka008397ht.for.124400-125756.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.124400-125756.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.124400-125756.Ar_EST_120301b_c12054%7C020304kaka008397ht.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9314%7Csi%3Ach211-.for.125989-127607.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.125989-127607.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.125989-127607.Ar_EST_120301b_c9314%7Csi%3Ach211-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11616%7Cprotein.for.127524-129056.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.127524-129056.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.127524-129056.Ar_EST_120301b_c11616%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15708%7Cphosphoserine.for.130824-132017.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.130824-132017.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.130824-132017.Ar_EST_120301b_c15708%7Cphosphoserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c261%7Cphosphoserine.for.131284-132651.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.131284-132651.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.131284-132651.Ar_EST_120301b_c261%7Cphosphoserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17653%7Cphosphoserine.for.131806-133058.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.131806-133058.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.131806-133058.Ar_EST_120301b_rep_c17653%7Cphosphoserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14091%7Cphosphoserine.for.131966-133271.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.131966-133271.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.131966-133271.Ar_EST_120301b_c14091%7Cphosphoserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7121%7Cprotein.for.134097-135719.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.134097-135719.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.134097-135719.Ar_EST_120301b_rep_c7121%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig326%7Cprotein.for.132489-135331.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.132489-135331.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.132489-135331.120301b_Contig326%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16289%7Csec23.for.132743-134105.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.132743-134105.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.132743-134105.Ar_EST_120301b_rep_c16289%7Csec23.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6736%7Caristolochia.for.139828-141206.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139828-141206.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139828-141206.Ar_EST_120301b_rep_c6736%7Caristolochia.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6315%7Cest940366.for.139857-141104.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139857-141104.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139857-141104.Ar_EST_120301b_rep_c6315%7Cest940366.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13068%7Cpooled.for.139871-141029.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139871-141029.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139871-141029.Ar_EST_120301b_rep_c13068%7Cpooled.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13929%7Csq2de42675.for.140270-141202.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.140270-141202.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.140270-141202.Ar_EST_120301b_rep_c13929%7Csq2de42675.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11029%7Cimmunoglobulin.for.139980-141203.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139980-141203.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139980-141203.Ar_EST_120301b_rep_c11029%7Cimmunoglobulin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14946%7Cfy831988.for.140104-141032.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.140104-141032.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.140104-141032.Ar_EST_120301b_rep_c14946%7Cfy831988.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5615%7Cprotein.for.139845-141209.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139845-141209.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139845-141209.Ar_EST_120301b_rep_c5615%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20304%7Cufl_343_70.for.139878-141104.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139878-141104.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139878-141104.Ar_EST_120301b_rep_c20304%7Cufl_343_70.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10688%7Ccj376499.for.140485-141416.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.140485-141416.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.140485-141416.Ar_EST_120301b_c10688%7Ccj376499.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3843%7Cvam6.for.141243-143315.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.141243-143315.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.141243-143315.Ar_EST_120301b_c3843%7Cvam6.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3148%7Cvam6.for.142318-143604.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.142318-143604.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.142318-143604.Ar_EST_120301b_c3148%7Cvam6.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10706%7Cvam6.for.142929-144422.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.142929-144422.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.142929-144422.Ar_EST_120301b_c10706%7Cvam6.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig120%7C24-hydroxycholesterol.for.145010-146443.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.145010-146443.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.145010-146443.120301b_Contig120%7C24-hydroxycholesterol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10803%7Cm-phase.for.158962-160174.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.158962-160174.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.158962-160174.Ar_EST_120301b_c10803%7Cm-phase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3179%7Cm-phase.for.158622-160179.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.158622-160179.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.158622-160179.Ar_EST_120301b_c3179%7Cm-phase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1473%7Cprotein.for.160432-161822.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.160432-161822.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.160432-161822.Ar_EST_120301b_c1473%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15862%7Cu1.for.161228-162785.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.161228-162785.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.161228-162785.Ar_EST_120301b_c15862%7Cu1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1039%7Cprotein.for.162586-165745.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162586-165745.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162586-165745.Ar_EST_120301b_c1039%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12113%7Cphospholipid-transporting.for.164845-166131.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.164845-166131.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.164845-166131.Ar_EST_120301b_c12113%7Cphospholipid-transporting.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1202%7Cprotein.for.165461-167255.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.165461-167255.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.165461-167255.Ar_EST_120301b_c1202%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig428%7Celongation.for.167131-168358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.167131-168358.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.167131-168358.120301b_Contig428%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16475%7Cspindle.for.173063-174841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.173063-174841.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.173063-174841.Ar_EST_120301b_c16475%7Cspindle.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8917%7Cmicrotubule.for.174515-176826.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.174515-176826.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.174515-176826.Ar_EST_120301b_c8917%7Cmicrotubule.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2889%7Cmicrotubule.for.176603-178213.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.176603-178213.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.176603-178213.Ar_EST_120301b_c2889%7Cmicrotubule.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13984%7Cubiquinone.for.178435-179738.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.178435-179738.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.178435-179738.Ar_EST_120301b_c13984%7Cubiquinone.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16223%7Cpredicted.for.179641-180468.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.179641-180468.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.179641-180468.Ar_EST_120301b_rep_c16223%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c356%7Csenescence.for.179460-180468.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.179460-180468.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.179460-180468.Ar_EST_120301b_c356%7Csenescence.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17910%7Cvon.for.179465-180468.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.179465-180468.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.179465-180468.Ar_EST_120301b_rep_c17910%7Cvon.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:67 now processing 0 total clusters:67 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:67 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:67 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:67 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:67 now processing 0 total clusters:67 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:37 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:41 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:41 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:48 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:53 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:50 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:44 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:55 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:53 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:32 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090387%7Cgb%7CEFC44039%2E1%7C.for.5934-7992.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.5934-7992.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.5934-7992.gi%7C284090387%7Cgb%7CEFC44039%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086420%7Cgb%7CEFC40097%2E1%7C.for.5946-8004.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.5946-8004.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.5946-8004.gi%7C284086420%7Cgb%7CEFC40097%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095349%7Cgb%7CEFC48980%2E1%7C.for.13485-14822.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.13485-14822.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.13485-14822.gi%7C284095349%7Cgb%7CEFC48980%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088756%7Cgb%7CEFC42418%2E1%7C.for.18996-20509.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.18996-20509.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.18996-20509.gi%7C284088756%7Cgb%7CEFC42418%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085637%7Cgb%7CEFC39319%2E1%7C.for.21370-22523.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.21370-22523.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.21370-22523.gi%7C284085637%7Cgb%7CEFC39319%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093747%7Cgb%7CEFC47384%2E1%7C.for.21217-22490.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.21217-22490.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.21217-22490.gi%7C284093747%7Cgb%7CEFC47384%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090698%7Cgb%7CEFC44348%2E1%7C.for.29504-31352.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.29504-31352.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.29504-31352.gi%7C284090698%7Cgb%7CEFC44348%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087383%7Cgb%7CEFC41053%2E1%7C.for.30814-32875.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30814-32875.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30814-32875.gi%7C284087383%7Cgb%7CEFC41053%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090239%7Cgb%7CEFC43892%2E1%7C.for.30865-32893.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30865-32893.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30865-32893.gi%7C284090239%7Cgb%7CEFC43892%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096950%7Cgb%7CEFC50577%2E1%7C.for.57873-59706.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.57873-59706.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.57873-59706.gi%7C284096950%7Cgb%7CEFC50577%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084213%7Cgb%7CEFC37908%2E1%7C.for.60507-63139.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.60507-63139.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.60507-63139.gi%7C284084213%7Cgb%7CEFC37908%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082995%7Cgb%7CEFC36703%2E1%7C.for.64841-65805.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.64841-65805.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.64841-65805.gi%7C284082995%7Cgb%7CEFC36703%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089602%7Cgb%7CEFC43258%2E1%7C.for.64728-65820.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.64728-65820.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.64728-65820.gi%7C284089602%7Cgb%7CEFC43258%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090820%7Cgb%7CEFC44470%2E1%7C.for.65960-67598.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.65960-67598.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.65960-67598.gi%7C284090820%7Cgb%7CEFC44470%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086979%7Cgb%7CEFC40652%2E1%7C.for.68893-71309.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.68893-71309.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.68893-71309.gi%7C284086979%7Cgb%7CEFC40652%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092246%7Cgb%7CEFC45889%2E1%7C.for.72193-73918.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.72193-73918.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.72193-73918.gi%7C284092246%7Cgb%7CEFC45889%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092608%7Cgb%7CEFC46249%2E1%7C.for.72208-73689.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.72208-73689.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.72208-73689.gi%7C284092608%7Cgb%7CEFC46249%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090371%7Cgb%7CEFC44023%2E1%7C.for.77792-79425.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.77792-79425.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.77792-79425.gi%7C284090371%7Cgb%7CEFC44023%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083121%7Cgb%7CEFC36828%2E1%7C.for.77795-79434.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.77795-79434.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.77795-79434.gi%7C284083121%7Cgb%7CEFC36828%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096642%7Cgb%7CEFC50269%2E1%7C.for.78695-79815.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.78695-79815.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.78695-79815.gi%7C284096642%7Cgb%7CEFC50269%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090576%7Cgb%7CEFC44227%2E1%7C.for.81422-83085.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.81422-83085.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.81422-83085.gi%7C284090576%7Cgb%7CEFC44227%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089802%7Cgb%7CEFC43457%2E1%7C.for.96533-98537.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.96533-98537.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.96533-98537.gi%7C284089802%7Cgb%7CEFC43457%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096866%7Cgb%7CEFC50493%2E1%7C.for.102814-104145.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104145.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104145.gi%7C284096866%7Cgb%7CEFC50493%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095151%7Cgb%7CEFC48783%2E1%7C.for.102823-104157.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102823-104157.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102823-104157.gi%7C284095151%7Cgb%7CEFC48783%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094810%7Cgb%7CEFC48443%2E1%7C.for.102808-104136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102808-104136.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102808-104136.gi%7C284094810%7Cgb%7CEFC48443%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093204%7Cgb%7CEFC46843%2E1%7C.for.102814-104115.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104115.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104115.gi%7C284093204%7Cgb%7CEFC46843%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095060%7Cgb%7CEFC48692%2E1%7C.for.102805-104241.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102805-104241.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102805-104241.gi%7C284095060%7Cgb%7CEFC48692%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088157%7Cgb%7CEFC41822%2E1%7C.for.102802-104127.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104127.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104127.gi%7C284088157%7Cgb%7CEFC41822%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095231%7Cgb%7CEFC48862%2E1%7C.for.102814-104220.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104220.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104220.gi%7C284095231%7Cgb%7CEFC48862%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092330%7Cgb%7CEFC45972%2E1%7C.for.102808-104265.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102808-104265.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102808-104265.gi%7C284092330%7Cgb%7CEFC45972%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087986%7Cgb%7CEFC41652%2E1%7C.for.102802-104154.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104154.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104154.gi%7C284087986%7Cgb%7CEFC41652%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085175%7Cgb%7CEFC38861%2E1%7C.for.102793-104148.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102793-104148.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102793-104148.gi%7C284085175%7Cgb%7CEFC38861%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095711%7Cgb%7CEFC49341%2E1%7C.for.102790-104265.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102790-104265.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102790-104265.gi%7C284095711%7Cgb%7CEFC49341%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092198%7Cgb%7CEFC45841%2E1%7C.for.102802-104148.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104148.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104148.gi%7C284092198%7Cgb%7CEFC45841%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093945%7Cgb%7CEFC47581%2E1%7C.for.102811-104103.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102811-104103.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102811-104103.gi%7C284093945%7Cgb%7CEFC47581%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096673%7Cgb%7CEFC50300%2E1%7C.for.102805-104136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102805-104136.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102805-104136.gi%7C284096673%7Cgb%7CEFC50300%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087489%7Cgb%7CEFC41158%2E1%7C.for.102802-104265.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104265.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104265.gi%7C284087489%7Cgb%7CEFC41158%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083677%7Cgb%7CEFC37378%2E1%7C.for.102814-104127.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104127.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104127.gi%7C284083677%7Cgb%7CEFC37378%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081592%7Cgb%7CEFC35538%2E1%7C.for.102802-104157.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104157.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104157.gi%7C284081592%7Cgb%7CEFC35538%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096540%7Cgb%7CEFC50168%2E1%7C.for.102811-104127.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102811-104127.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102811-104127.gi%7C284096540%7Cgb%7CEFC50168%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086692%7Cgb%7CEFC40367%2E1%7C.for.102796-104265.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102796-104265.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102796-104265.gi%7C284086692%7Cgb%7CEFC40367%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087105%7Cgb%7CEFC40777%2E1%7C.for.102781-104211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102781-104211.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102781-104211.gi%7C284087105%7Cgb%7CEFC40777%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087910%7Cgb%7CEFC41577%2E1%7C.for.102790-104136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102790-104136.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102790-104136.gi%7C284087910%7Cgb%7CEFC41577%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087186%7Cgb%7CEFC40857%2E1%7C.for.102814-104124.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104124.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104124.gi%7C284087186%7Cgb%7CEFC40857%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095576%7Cgb%7CEFC49206%2E1%7C.for.102799-104136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102799-104136.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102799-104136.gi%7C284095576%7Cgb%7CEFC49206%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080992%7Cgb%7CEFC35256%2E1%7C.for.103025-104196.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.103025-104196.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.103025-104196.gi%7C284080992%7Cgb%7CEFC35256%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095585%7Cgb%7CEFC49215%2E1%7C.for.102802-104205.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104205.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104205.gi%7C284095585%7Cgb%7CEFC49215%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087063%7Cgb%7CEFC40735%2E1%7C.for.102808-104133.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102808-104133.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102808-104133.gi%7C284087063%7Cgb%7CEFC40735%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089507%7Cgb%7CEFC43164%2E1%7C.for.102793-104115.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102793-104115.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102793-104115.gi%7C284089507%7Cgb%7CEFC43164%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096356%7Cgb%7CEFC49984%2E1%7C.for.102781-104115.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102781-104115.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102781-104115.gi%7C284096356%7Cgb%7CEFC49984%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092994%7Cgb%7CEFC46634%2E1%7C.for.102814-104004.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104004.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104004.gi%7C284092994%7Cgb%7CEFC46634%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089169%7Cgb%7CEFC42828%2E1%7C.for.117066-118771.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.117066-118771.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.117066-118771.gi%7C284089169%7Cgb%7CEFC42828%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090561%7Cgb%7CEFC44212%2E1%7C.for.122519-125055.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.122519-125055.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.122519-125055.gi%7C284090561%7Cgb%7CEFC44212%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096574%7Cgb%7CEFC50202%2E1%7C.for.127726-128828.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.127726-128828.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.127726-128828.gi%7C284096574%7Cgb%7CEFC50202%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088808%7Cgb%7CEFC42469%2E1%7C.for.130514-133218.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.130514-133218.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.130514-133218.gi%7C284088808%7Cgb%7CEFC42469%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084220%7Cgb%7CEFC37915%2E1%7C.for.132499-135658.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.132499-135658.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.132499-135658.gi%7C284084220%7Cgb%7CEFC37915%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095359%7Cgb%7CEFC48990%2E1%7C.for.138504-139857.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.138504-139857.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.138504-139857.gi%7C284095359%7Cgb%7CEFC48990%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091769%7Cgb%7CEFC45414%2E1%7C.for.141348-145005.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.141348-145005.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.141348-145005.gi%7C284091769%7Cgb%7CEFC45414%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085225%7Cgb%7CEFC38911%2E1%7C.for.158649-159862.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.158649-159862.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.158649-159862.gi%7C284085225%7Cgb%7CEFC38911%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081490%7Cgb%7CEFC35474%2E1%7C.for.160404-162051.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.160404-162051.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.160404-162051.gi%7C284081490%7Cgb%7CEFC35474%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092821%7Cgb%7CEFC46461%2E1%7C.for.162694-166950.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162694-166950.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162694-166950.gi%7C284092821%7Cgb%7CEFC46461%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083022%7Cgb%7CEFC36730%2E1%7C.for.162712-166962.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162712-166962.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162712-166962.gi%7C284083022%7Cgb%7CEFC36730%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093552%7Cgb%7CEFC47189%2E1%7C.for.162712-167013.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162712-167013.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162712-167013.gi%7C284093552%7Cgb%7CEFC47189%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085695%7Cgb%7CEFC39377%2E1%7C.for.162712-167037.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162712-167037.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162712-167037.gi%7C284085695%7Cgb%7CEFC39377%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085694%7Cgb%7CEFC39376%2E1%7C.for.162712-167037.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162712-167037.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162712-167037.gi%7C284085694%7Cgb%7CEFC39376%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082133%7Cgb%7CEFC35904%2E1%7C.for.165317-166962.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.165317-166962.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.165317-166962.gi%7C284082133%7Cgb%7CEFC35904%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086144%7Cgb%7CEFC39822%2E1%7C.for.169433-170394.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.169433-170394.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.169433-170394.gi%7C284086144%7Cgb%7CEFC39822%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090570%7Cgb%7CEFC44221%2E1%7C.for.178423-180014.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.178423-180014.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.178423-180014.gi%7C284090570%7Cgb%7CEFC44221%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 26 ...processing 1 of 26 ...processing 2 of 26 ...processing 3 of 26 ...processing 4 of 26 ...processing 5 of 26 ...processing 6 of 26 ...processing 7 of 26 ...processing 8 of 26 ...processing 9 of 26 ...processing 10 of 26 ...processing 11 of 26 ...processing 12 of 26 ...processing 13 of 26 ...processing 14 of 26 ...processing 15 of 26 ...processing 16 of 26 ...processing 17 of 26 ...processing 18 of 26 ...processing 19 of 26 ...processing 20 of 26 ...processing 21 of 26 ...processing 22 of 26 ...processing 23 of 26 ...processing 24 of 26 ...processing 25 of 26 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 22 ...processing 1 of 22 ...processing 2 of 22 ...processing 3 of 22 ...processing 4 of 22 ...processing 5 of 22 ...processing 6 of 22 ...processing 7 of 22 ...processing 8 of 22 ...processing 9 of 22 ...processing 10 of 22 ...processing 11 of 22 ...processing 12 of 22 ...processing 13 of 22 ...processing 14 of 22 ...processing 15 of 22 ...processing 16 of 22 ...processing 17 of 22 ...processing 18 of 22 ...processing 19 of 22 ...processing 20 of 22 ...processing 21 of 22 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:37 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:34 now processing 0 total clusters:34 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.0-851.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.0-851.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.0-851.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.3246-4627.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.3246-4627.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.3246-4627.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.6133-7804.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.6133-7804.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.6133-7804.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.10859-11768.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.10859-11768.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.10859-11768.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.20331-21328.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.20331-21328.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.20331-21328.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.21416-22323.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.21416-22323.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.21416-22323.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.26495-27753.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.26495-27753.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.26495-27753.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.30953-32743.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.30953-32743.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.30953-32743.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.49888-57927.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.49888-57927.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.49888-57927.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.58059-59506.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.58059-59506.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.58059-59506.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.60706-62939.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.60706-62939.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.60706-62939.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.65915-71109.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.65915-71109.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.65915-71109.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.74349-75305.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.74349-75305.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.74349-75305.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.77994-79234.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.77994-79234.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.77994-79234.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.81540-82885.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.81540-82885.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.81540-82885.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.86130-88294.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.86130-88294.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.86130-88294.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.102980-104020.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.102980-104020.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.102980-104020.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.109091-110054.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.109091-110054.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.109091-110054.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.117265-118571.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.117265-118571.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.117265-118571.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.126188-127407.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.126188-127407.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.126188-127407.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.130713-133076.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.130713-133076.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.130713-133076.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.138703-139657.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.138703-139657.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.138703-139657.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.140056-140933.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.140056-140933.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.140056-140933.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.141442-144805.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.141442-144805.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.141442-144805.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.159161-159974.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.159161-159974.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.159161-159974.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.160603-162588.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.160603-162588.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.160603-162588.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.162730-167055.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.162730-167055.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.162730-167055.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.173262-178013.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.173262-178013.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.173262-178013.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.179584-180468.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.179584-180468.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.179584-180468.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.5149-6077.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.5149-6077.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.5149-6077.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.13684-17094.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.13684-17094.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.13684-17094.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.19365-20357.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.19365-20357.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.19365-20357.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.23871-24779.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.23871-24779.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.23871-24779.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.29606-31191.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.29606-31191.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.29606-31191.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.32530-35441.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.32530-35441.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.32530-35441.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.36060-44551.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.36060-44551.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.36060-44551.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.59509-60393.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.59509-60393.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.59509-60393.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.64927-65860.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.64927-65860.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.64927-65860.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.70926-71886.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.70926-71886.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.70926-71886.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.72298-73718.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.72298-73718.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.72298-73718.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/40_0.78887-79787.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/40_0.78887-79787.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/40_0.78887-79787.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/41_0.82639-83781.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/41_0.82639-83781.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/41_0.82639-83781.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/42_0.89389-90356.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/42_0.89389-90356.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/42_0.89389-90356.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/43_0.96732-98337.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/43_0.96732-98337.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/43_0.96732-98337.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/44_0.105759-106784.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/44_0.105759-106784.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/44_0.105759-106784.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/45_0.110288-111257.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/45_0.110288-111257.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/45_0.110288-111257.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/46_0.111999-112956.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/46_0.111999-112956.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/46_0.111999-112956.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/47_0.114389-115483.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/47_0.114389-115483.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/47_0.114389-115483.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/48_0.115546-117280.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/48_0.115546-117280.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/48_0.115546-117280.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/49_0.118211-119137.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/49_0.118211-119137.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/49_0.118211-119137.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/50_0.122718-125556.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/50_0.122718-125556.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/50_0.122718-125556.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/51_0.127723-128856.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/51_0.127723-128856.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/51_0.127723-128856.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/52_0.132688-135521.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/52_0.132688-135521.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/52_0.132688-135521.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/53_0.145209-146243.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/53_0.145209-146243.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/53_0.145209-146243.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/54_0.178622-179841.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/54_0.178622-179841.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/54_0.178622-179841.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C23 Length: 251560 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:35 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:53 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:38 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:63 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:51 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:49 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:39 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:41 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:43 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:50 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:7 current j:0 j_size:7 current j:1 j_size:7 current j:2 j_size:7 current j:3 j_size:7 current j:4 j_size:7 current j:5 j_size:7 current j:6 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C23.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C23.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:10 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:14 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:9 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:10 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:11 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:12 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12272%7Chypothetical.for.6337-7736.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.6337-7736.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.6337-7736.Ar_EST_120301b_c12272%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18243%7Cdk907995.for.9153-10368.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.9153-10368.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.9153-10368.Ar_EST_120301b_c18243%7Cdk907995.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7871%7Cdc598359.for.10778-12259.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.10778-12259.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.10778-12259.Ar_EST_120301b_c7871%7Cdc598359.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c875%7Cglucosamine--fructose-6-phosphate.for.10913-12823.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.10913-12823.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.10913-12823.Ar_EST_120301b_c875%7Cglucosamine--fructose-6-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c273%7Cpentatricopeptide.for.11344-13207.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.11344-13207.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.11344-13207.Ar_EST_120301b_c273%7Cpentatricopeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19019%7C8807_100277_12.for.10785-12317.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.10785-12317.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.10785-12317.Ar_EST_120301b_c19019%7C8807_100277_12.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3513%7Cprotein.for.12916-15044.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.12916-15044.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.12916-15044.Ar_EST_120301b_c3513%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11592%7C294772423.for.14264-15572.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.14264-15572.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.14264-15572.Ar_EST_120301b_c11592%7C294772423.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6938%7Cpredicted.for.19566-20958.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.19566-20958.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.19566-20958.Ar_EST_120301b_rep_c6938%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10805%7Cagencourt_26185347.for.30415-32475.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.30415-32475.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.30415-32475.Ar_EST_120301b_c10805%7Cagencourt_26185347.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4838%7Ckeratin.for.32416-34153.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32416-34153.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32416-34153.Ar_EST_120301b_rep_c4838%7Ckeratin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6302%7Ckeratin.for.32987-34348.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32987-34348.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32987-34348.Ar_EST_120301b_rep_c6302%7Ckeratin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5667%7Ckeratin.for.32077-34405.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32077-34405.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32077-34405.Ar_EST_120301b_rep_c5667%7Ckeratin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18263%7Cpredicted.for.32928-34003.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32928-34003.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32928-34003.Ar_EST_120301b_rep_c18263%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6913%7Csmc.for.32076-33516.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32076-33516.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32076-33516.Ar_EST_120301b_rep_c6913%7Csmc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15759%7Csplicing.for.38497-39943.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.38497-39943.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.38497-39943.Ar_EST_120301b_c15759%7Csplicing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1630%7Cprotein.for.39271-41325.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.39271-41325.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.39271-41325.Ar_EST_120301b_c1630%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c983%7Csplicing.for.40524-41827.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.40524-41827.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.40524-41827.Ar_EST_120301b_c983%7Csplicing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15568%7Cspliceosome-associated.for.40292-41528.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.40292-41528.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.40292-41528.Ar_EST_120301b_c15568%7Cspliceosome-associated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11774%7Csplicing.for.41071-42349.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41071-42349.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41071-42349.Ar_EST_120301b_c11774%7Csplicing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3650%7Crsc.for.46681-50017.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.46681-50017.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.46681-50017.Ar_EST_120301b_c3650%7Crsc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9332%7Cswi.for.49559-51021.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.49559-51021.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.49559-51021.Ar_EST_120301b_c9332%7Cswi.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11295%7Cbeach.for.50529-52094.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.50529-52094.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.50529-52094.Ar_EST_120301b_c11295%7Cbeach.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10349%7Cbeach.for.51738-53143.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.51738-53143.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.51738-53143.Ar_EST_120301b_c10349%7Cbeach.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18164%7Cneurobeachin-like.for.52474-53990.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.52474-53990.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.52474-53990.Ar_EST_120301b_c18164%7Cneurobeachin-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1782%7Cneurobeachin-like.for.54265-55844.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.54265-55844.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.54265-55844.Ar_EST_120301b_c1782%7Cneurobeachin-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2203%7Cbeach.for.55572-57353.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.55572-57353.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.55572-57353.Ar_EST_120301b_c2203%7Cbeach.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11079%7Cprotein.for.57324-58683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.57324-58683.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.57324-58683.Ar_EST_120301b_c11079%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1313%7Cvacuolar.for.57990-59334.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.57990-59334.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.57990-59334.Ar_EST_120301b_c1313%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c145%7C40s.for.58792-60295.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.58792-60295.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.58792-60295.Ar_EST_120301b_c145%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c936%7Chypothetical.for.59809-61596.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.59809-61596.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.59809-61596.Ar_EST_120301b_c936%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15515%7Cprotein.for.60545-61895.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.60545-61895.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.60545-61895.Ar_EST_120301b_c15515%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14904%7Cmetal-dependent.for.62278-63609.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.62278-63609.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.62278-63609.Ar_EST_120301b_c14904%7Cmetal-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10329%7Cav385603.for.63143-64309.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.63143-64309.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.63143-64309.Ar_EST_120301b_c10329%7Cav385603.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19262%7Csignal.for.62864-64138.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.62864-64138.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.62864-64138.Ar_EST_120301b_c19262%7Csignal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1637%7Cdna.for.66879-69168.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.66879-69168.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.66879-69168.Ar_EST_120301b_c1637%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14997%7Cdna.for.68365-69679.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.68365-69679.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.68365-69679.Ar_EST_120301b_c14997%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13721%7CHypothetical.for.70080-71563.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.70080-71563.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.70080-71563.Ar_EST_120301b_c13721%7CHypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3375%7Crelated.for.70835-72195.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.70835-72195.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.70835-72195.Ar_EST_120301b_c3375%7Crelated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6563%7Cmeloidogyne.for.71999-73500.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.71999-73500.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.71999-73500.Ar_EST_120301b_rep_c6563%7Cmeloidogyne.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13629%7Cpredicted.for.72275-73348.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.72275-73348.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.72275-73348.Ar_EST_120301b_rep_c13629%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20446%7C40s.for.72275-73499.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.72275-73499.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.72275-73499.Ar_EST_120301b_rep_c20446%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10109%7Ctrc_19-.for.72002-73566.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.72002-73566.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.72002-73566.Ar_EST_120301b_rep_c10109%7Ctrc_19-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig430%7Cssalnwh504101.for.72000-73472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.72000-73472.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.72000-73472.120301b_Contig430%7Cssalnwh504101.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig229%7Cnucleotide.for.73892-76171.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.73892-76171.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.73892-76171.120301b_Contig229%7Cnucleotide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2043%7Cnucleotide.for.75653-76987.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.75653-76987.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.75653-76987.Ar_EST_120301b_c2043%7Cnucleotide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8983%7C---NA---.for.76553-78232.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.76553-78232.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.76553-78232.Ar_EST_120301b_c8983%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12405%7Cwd40.for.77496-78867.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.77496-78867.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.77496-78867.Ar_EST_120301b_c12405%7Cwd40.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4427%7Cglk1_triva.for.80928-83103.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.80928-83103.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.80928-83103.Ar_EST_120301b_rep_c4427%7Cglk1_triva.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17133%7C---NA---.for.85095-86344.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.85095-86344.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.85095-86344.Ar_EST_120301b_c17133%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7928%7Cig.for.86040-87963.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.86040-87963.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.86040-87963.Ar_EST_120301b_c7928%7Cig.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12649%7Cprotein.for.87787-89098.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.87787-89098.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.87787-89098.Ar_EST_120301b_c12649%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2907%7Cubiquitin.for.90189-92656.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.90189-92656.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.90189-92656.Ar_EST_120301b_c2907%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2207%7Cubiquitin.for.92015-93326.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.92015-93326.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.92015-93326.Ar_EST_120301b_c2207%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8690%7Chypothetical.for.93831-95434.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.93831-95434.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.93831-95434.Ar_EST_120301b_c8690%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1542%7Chypothetical.for.93572-95544.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.93572-95544.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.93572-95544.Ar_EST_120301b_c1542%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c307%7Cpotassium.for.97783-99799.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.97783-99799.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.97783-99799.Ar_EST_120301b_c307%7Cpotassium.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1137%7Cpotassium.for.99027-100692.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.99027-100692.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.99027-100692.120301b_Contig1137%7Cpotassium.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1107%7Crubrerythrin.for.102806-104060.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.102806-104060.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.102806-104060.Ar_EST_120301b_c1107%7Crubrerythrin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9961%7Clv_hc_ra061h09f.for.103467-105337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.103467-105337.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.103467-105337.Ar_EST_120301b_c9961%7Clv_hc_ra061h09f.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3345%7Cmdfw.for.104538-106152.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.104538-106152.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.104538-106152.Ar_EST_120301b_c3345%7Cmdfw.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2319%7Cl-aspartate.for.105561-107091.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.105561-107091.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.105561-107091.Ar_EST_120301b_c2319%7Cl-aspartate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17231%7Cl-aspartate.for.105988-107295.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.105988-107295.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.105988-107295.Ar_EST_120301b_c17231%7Cl-aspartate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6462%7Cheat.for.108680-110085.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.108680-110085.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.108680-110085.Ar_EST_120301b_rep_c6462%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9388%7Cribosomal.for.108641-109814.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.108641-109814.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.108641-109814.Ar_EST_120301b_rep_c9388%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5623%7Cprotein.for.108638-110171.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.108638-110171.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.108638-110171.Ar_EST_120301b_rep_c5623%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13361%7Crasgtpase-activating.for.108910-110082.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.108910-110082.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.108910-110082.Ar_EST_120301b_rep_c13361%7Crasgtpase-activating.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14704%7Ccbht.for.110606-111814.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.110606-111814.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.110606-111814.Ar_EST_120301b_c14704%7Ccbht.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9096%7Cshort-chain.for.113730-115106.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.113730-115106.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.113730-115106.Ar_EST_120301b_c9096%7Cshort-chain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c617%7Cshort-chain.for.114369-115855.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.114369-115855.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.114369-115855.Ar_EST_120301b_c617%7Cshort-chain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11555%7Ccondensin.for.115828-117655.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.115828-117655.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.115828-117655.Ar_EST_120301b_c11555%7Ccondensin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4730%7C2-oxoglutarate.for.118383-120710.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.118383-120710.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.118383-120710.Ar_EST_120301b_rep_c4730%7C2-oxoglutarate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9087%7C2-oxoglutarate.for.119310-120836.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.119310-120836.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.119310-120836.Ar_EST_120301b_rep_c9087%7C2-oxoglutarate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c377%7Coxoglutarate.for.119770-121524.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.119770-121524.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.119770-121524.Ar_EST_120301b_c377%7Coxoglutarate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig86%7Coxoglutarate.for.120319-122186.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.120319-122186.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.120319-122186.120301b_Contig86%7Coxoglutarate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9136%7C---NA---.for.121984-123442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.121984-123442.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.121984-123442.Ar_EST_120301b_c9136%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15662%7C04bax.for.123453-124718.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.123453-124718.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.123453-124718.Ar_EST_120301b_c15662%7C04bax.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10569%7C---NA---.for.124646-125909.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.124646-125909.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.124646-125909.Ar_EST_120301b_c10569%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9106%7Cest1049462.for.126134-128669.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.126134-128669.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.126134-128669.Ar_EST_120301b_c9106%7Cest1049462.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig958%7Cwd.for.128313-130118.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.128313-130118.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.128313-130118.120301b_Contig958%7Cwd.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7976%7Cvacuolar.for.129482-131502.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.129482-131502.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.129482-131502.Ar_EST_120301b_c7976%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4653%7Cloc496093.for.132642-134563.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.132642-134563.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.132642-134563.Ar_EST_120301b_rep_c4653%7Cloc496093.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14445%7Cguanine.for.132861-133899.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.132861-133899.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.132861-133899.Ar_EST_120301b_rep_c14445%7Cguanine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7186%7Cloc496093.for.132642-134374.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.132642-134374.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.132642-134374.Ar_EST_120301b_rep_c7186%7Cloc496093.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13603%7Cnuclear.for.133797-134929.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.133797-134929.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.133797-134929.Ar_EST_120301b_c13603%7Cnuclear.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16532%7Coxax-.for.134229-135699.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.134229-135699.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.134229-135699.Ar_EST_120301b_c16532%7Coxax-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5790%7Ca.for.137376-138875.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.137376-138875.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.137376-138875.Ar_EST_120301b_rep_c5790%7Ca.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig310%7Cheat.for.135898-138850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.135898-138850.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.135898-138850.120301b_Contig310%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12450%7C---NA---.for.138995-140087.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.138995-140087.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.138995-140087.Ar_EST_120301b_c12450%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7908%7Cdomain-containing.for.141024-142430.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.141024-142430.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.141024-142430.Ar_EST_120301b_c7908%7Cdomain-containing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7834%7Cg-protein.for.142400-144309.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142400-144309.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142400-144309.Ar_EST_120301b_c7834%7Cg-protein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19743%7Cguanine.for.143080-144247.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.143080-144247.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.143080-144247.Ar_EST_120301b_c19743%7Cguanine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13715%7Cglycoprotein.for.144427-145703.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.144427-145703.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.144427-145703.Ar_EST_120301b_rep_c13715%7Cglycoprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10950%7Cdna.for.146053-147455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.146053-147455.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.146053-147455.Ar_EST_120301b_c10950%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14111%7Cdna.for.146865-148324.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.146865-148324.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.146865-148324.Ar_EST_120301b_c14111%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig531%7Cprotein.for.147650-149098.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.147650-149098.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.147650-149098.120301b_Contig531%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig634%7Ccr529494.for.150372-151811.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.150372-151811.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.150372-151811.120301b_Contig634%7Ccr529494.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7634%7Ccr529494.for.150541-151631.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.150541-151631.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.150541-151631.Ar_EST_120301b_rep_c7634%7Ccr529494.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7240%7Ccr529494.for.150235-151891.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.150235-151891.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.150235-151891.Ar_EST_120301b_rep_c7240%7Ccr529494.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9367%7C---NA---.for.152138-153239.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.152138-153239.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.152138-153239.Ar_EST_120301b_c9367%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16367%7C4-hydroxyphenylpyruvate.for.153226-154544.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.153226-154544.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.153226-154544.Ar_EST_120301b_c16367%7C4-hydroxyphenylpyruvate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c854%7C4-hydroxyphenylpyruvate.for.152627-154115.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.152627-154115.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.152627-154115.Ar_EST_120301b_c854%7C4-hydroxyphenylpyruvate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6215%7Crna.for.159799-161632.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.159799-161632.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.159799-161632.Ar_EST_120301b_rep_c6215%7Crna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5579%7Crna.for.159768-161642.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.159768-161642.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.159768-161642.Ar_EST_120301b_rep_c5579%7Crna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14244%7Crna.for.160284-161614.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.160284-161614.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.160284-161614.Ar_EST_120301b_rep_c14244%7Crna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10333%7Cacyl-.for.159869-161044.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.159869-161044.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.159869-161044.Ar_EST_120301b_c10333%7Cacyl-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1371%7Crac.for.167294-169987.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.167294-169987.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.167294-169987.120301b_Contig1371%7Crac.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17331%7Cnedd8.for.167035-168118.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.167035-168118.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.167035-168118.Ar_EST_120301b_c17331%7Cnedd8.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10519%7Cest.for.169349-170698.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.169349-170698.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.169349-170698.Ar_EST_120301b_c10519%7Cest.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4191%7Csuccinyl-.for.170904-172812.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.170904-172812.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.170904-172812.Ar_EST_120301b_rep_c4191%7Csuccinyl-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4684%7Cmeloidogyne.for.172079-173713.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.172079-173713.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.172079-173713.Ar_EST_120301b_rep_c4684%7Cmeloidogyne.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15717%7Culva.for.172475-173715.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.172475-173715.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.172475-173715.Ar_EST_120301b_rep_c15717%7Culva.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9614%7Ccohesin.for.182031-184093.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.182031-184093.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.182031-184093.Ar_EST_120301b_c9614%7Ccohesin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17764%7C---NA---.for.183901-185011.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.183901-185011.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.183901-185011.Ar_EST_120301b_c17764%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1778%7Chypothetical.for.183763-185094.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.183763-185094.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.183763-185094.Ar_EST_120301b_c1778%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14507%7Chypothetical.for.184948-186185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.184948-186185.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.184948-186185.Ar_EST_120301b_c14507%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9088%7Cdiguanylate.for.185779-187336.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.185779-187336.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.185779-187336.Ar_EST_120301b_c9088%7Cdiguanylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1730%7Cleucine-rich.for.188767-190142.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.188767-190142.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.188767-190142.Ar_EST_120301b_c1730%7Cleucine-rich.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3669%7Ccentrosome-.for.189857-191499.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.189857-191499.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.189857-191499.Ar_EST_120301b_c3669%7Ccentrosome-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14832%7C---NA---.for.190095-191135.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.190095-191135.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.190095-191135.Ar_EST_120301b_rep_c14832%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15417%7Chypothetical.for.189764-191335.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.189764-191335.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.189764-191335.Ar_EST_120301b_c15417%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9815%7Cpre-mrna-splicing.for.191755-193413.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.191755-193413.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.191755-193413.Ar_EST_120301b_c9815%7Cpre-mrna-splicing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2402%7Calpha-l-glutamate.for.192780-194621.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.192780-194621.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.192780-194621.Ar_EST_120301b_c2402%7Calpha-l-glutamate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2515%7Cfq080129.for.200643-201890.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.200643-201890.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.200643-201890.Ar_EST_120301b_c2515%7Cfq080129.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16244%7Cpredicted.for.203700-205068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.203700-205068.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.203700-205068.Ar_EST_120301b_c16244%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig564%7Calg-2.for.204341-206843.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204341-206843.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204341-206843.120301b_Contig564%7Calg-2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16467%7Cfr764264.for.204297-205408.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204297-205408.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204297-205408.Ar_EST_120301b_rep_c16467%7Cfr764264.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19160%7Crho.for.204343-205515.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204343-205515.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204343-205515.Ar_EST_120301b_rep_c19160%7Crho.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig577%7Calg-2.for.204322-207530.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204322-207530.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204322-207530.120301b_Contig577%7Calg-2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig646%7C3-hydroxyisobutyrate.for.210928-212168.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.210928-212168.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.210928-212168.120301b_Contig646%7C3-hydroxyisobutyrate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7959%7C3-hydroxyisobutyrate.for.210928-212620.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.210928-212620.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.210928-212620.Ar_EST_120301b_c7959%7C3-hydroxyisobutyrate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1520%7Cring.for.212862-214368.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.212862-214368.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.212862-214368.Ar_EST_120301b_c1520%7Cring.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17963%7Cribonuclease.for.213718-215087.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.213718-215087.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.213718-215087.Ar_EST_120301b_c17963%7Cribonuclease.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15655%7Chydroxyacylglutathione.for.217920-219067.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.217920-219067.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.217920-219067.Ar_EST_120301b_c15655%7Chydroxyacylglutathione.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1032%7Cbar.for.217720-219194.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.217720-219194.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.217720-219194.Ar_EST_120301b_c1032%7Cbar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3714%7Cpredicted.for.219865-221920.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.219865-221920.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.219865-221920.Ar_EST_120301b_c3714%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9360%7Cpectin.for.222677-223963.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.222677-223963.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.222677-223963.Ar_EST_120301b_c9360%7Cpectin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14957%7C---NA---.for.223737-224678.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.223737-224678.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.223737-224678.Ar_EST_120301b_c14957%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16305%7Ccu718678.for.227564-228814.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.227564-228814.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.227564-228814.Ar_EST_120301b_c16305%7Ccu718678.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15895%7Cgm-c1079.for.231109-232430.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.231109-232430.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.231109-232430.Ar_EST_120301b_c15895%7Cgm-c1079.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15734%7Celectron.for.237011-238483.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.237011-238483.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.237011-238483.Ar_EST_120301b_c15734%7Celectron.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig277%7Celectron-transferring-flavoprotein.for.235927-238334.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.235927-238334.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.235927-238334.120301b_Contig277%7Celectron-transferring-flavoprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14121%7Csme00002039.for.238974-239931.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.238974-239931.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.238974-239931.Ar_EST_120301b_rep_c14121%7Csme00002039.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4568%7Chypothetical.for.238239-240574.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.238239-240574.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.238239-240574.Ar_EST_120301b_rep_c4568%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7127%7Chypothetical.for.238312-239951.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.238312-239951.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.238312-239951.Ar_EST_120301b_rep_c7127%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13716%7Cpossible.for.239125-240151.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.239125-240151.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.239125-240151.Ar_EST_120301b_rep_c13716%7Cpossible.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13710%7C---NA---.for.239844-240691.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.239844-240691.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.239844-240691.Ar_EST_120301b_c13710%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig398%7Cphage.for.240269-242260.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.240269-242260.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.240269-242260.120301b_Contig398%7Cphage.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8397%7Cprotein.for.241758-243744.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.241758-243744.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.241758-243744.Ar_EST_120301b_c8397%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8110%7Clongevity.for.242976-244909.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.242976-244909.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.242976-244909.Ar_EST_120301b_c8110%7Clongevity.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13752%7Ctranscriptional.for.248009-249354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.248009-249354.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.248009-249354.Ar_EST_120301b_rep_c13752%7Ctranscriptional.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15531%7Ctranscriptional.for.247898-249032.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.247898-249032.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.247898-249032.Ar_EST_120301b_c15531%7Ctranscriptional.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1651%7Ctpr.for.248173-249572.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.248173-249572.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.248173-249572.Ar_EST_120301b_c1651%7Ctpr.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c720%7Ctpr.for.247246-248705.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.247246-248705.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.247246-248705.Ar_EST_120301b_c720%7Ctpr.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11668%7Ccce.for.248728-249756.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.248728-249756.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.248728-249756.Ar_EST_120301b_c11668%7Ccce.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17777%7Cfungal.for.249599-250715.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.249599-250715.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.249599-250715.Ar_EST_120301b_c17777%7Cfungal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13808%7Ccls.for.249917-251189.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.249917-251189.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.249917-251189.Ar_EST_120301b_c13808%7Ccls.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 total clusters:97 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:89 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:71 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:60 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:85 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:79 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:74 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:70 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:82 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:72 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:83 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089856%7Cgb%7CEFC43511%2E1%7C.for.15123-17086.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.15123-17086.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.15123-17086.gi%7C284089856%7Cgb%7CEFC43511%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094339%7Cgb%7CEFC47973%2E1%7C.for.16848-18751.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.16848-18751.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.16848-18751.gi%7C284094339%7Cgb%7CEFC47973%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088678%7Cgb%7CEFC42340%2E1%7C.for.16848-18457.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.16848-18457.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.16848-18457.gi%7C284088678%7Cgb%7CEFC42340%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094128%7Cgb%7CEFC47763%2E1%7C.for.18785-20125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18785-20125.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18785-20125.gi%7C284094128%7Cgb%7CEFC47763%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093755%7Cgb%7CEFC47392%2E1%7C.for.18785-20125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18785-20125.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18785-20125.gi%7C284093755%7Cgb%7CEFC47392%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084671%7Cgb%7CEFC38361%2E1%7C.for.18785-20125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18785-20125.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18785-20125.gi%7C284084671%7Cgb%7CEFC38361%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087410%7Cgb%7CEFC41080%2E1%7C.for.18821-20125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18821-20125.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18821-20125.gi%7C284087410%7Cgb%7CEFC41080%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095769%7Cgb%7CEFC49399%2E1%7C.for.18767-20125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18767-20125.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18767-20125.gi%7C284095769%7Cgb%7CEFC49399%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088777%7Cgb%7CEFC42438%2E1%7C.for.18821-20125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18821-20125.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18821-20125.gi%7C284088777%7Cgb%7CEFC42438%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096300%7Cgb%7CEFC49928%2E1%7C.for.20271-31022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.20271-31022.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.20271-31022.gi%7C284096300%7Cgb%7CEFC49928%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.for.35827-36896.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.35827-36896.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.35827-36896.gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093627%7Cgb%7CEFC47264%2E1%7C.for.35878-38883.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.35878-38883.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.35878-38883.gi%7C284093627%7Cgb%7CEFC47264%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093553%7Cgb%7CEFC47190%2E1%7C.for.38660-42327.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.38660-42327.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.38660-42327.gi%7C284093553%7Cgb%7CEFC47190%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088699%7Cgb%7CEFC42361%2E1%7C.for.41842-43571.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41842-43571.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41842-43571.gi%7C284088699%7Cgb%7CEFC42361%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093661%7Cgb%7CEFC47298%2E1%7C.for.41803-44573.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41803-44573.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41803-44573.gi%7C284093661%7Cgb%7CEFC47298%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081561%7Cgb%7CEFC35518%2E1%7C.for.41782-43508.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41782-43508.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41782-43508.gi%7C284081561%7Cgb%7CEFC35518%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082242%7Cgb%7CEFC35988%2E1%7C.for.41800-43481.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41800-43481.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41800-43481.gi%7C284082242%7Cgb%7CEFC35988%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088654%7Cgb%7CEFC42316%2E1%7C.for.41833-43508.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41833-43508.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41833-43508.gi%7C284088654%7Cgb%7CEFC42316%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096156%7Cgb%7CEFC49785%2E1%7C.for.41836-43487.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41836-43487.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41836-43487.gi%7C284096156%7Cgb%7CEFC49785%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096936%7Cgb%7CEFC50563%2E1%7C.for.47476-49712.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.47476-49712.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.47476-49712.gi%7C284096936%7Cgb%7CEFC50563%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095549%7Cgb%7CEFC49179%2E1%7C.for.47515-49742.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.47515-49742.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.47515-49742.gi%7C284095549%7Cgb%7CEFC49179%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093648%7Cgb%7CEFC47285%2E1%7C.for.45949-50849.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.45949-50849.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.45949-50849.gi%7C284093648%7Cgb%7CEFC47285%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095906%7Cgb%7CEFC49535%2E1%7C.for.47530-49751.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.47530-49751.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.47530-49751.gi%7C284095906%7Cgb%7CEFC49535%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087958%7Cgb%7CEFC41624%2E1%7C.for.47503-49751.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.47503-49751.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.47503-49751.gi%7C284087958%7Cgb%7CEFC41624%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088520%7Cgb%7CEFC42183%2E1%7C.for.51477-53404.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.51477-53404.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.51477-53404.gi%7C284088520%7Cgb%7CEFC42183%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093550%7Cgb%7CEFC47187%2E1%7C.for.61571-62913.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.61571-62913.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.61571-62913.gi%7C284093550%7Cgb%7CEFC47187%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095323%7Cgb%7CEFC48954%2E1%7C.for.62265-63643.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.62265-63643.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.62265-63643.gi%7C284095323%7Cgb%7CEFC48954%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083272%7Cgb%7CEFC36977%2E1%7C.for.67536-70556.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.67536-70556.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.67536-70556.gi%7C284083272%7Cgb%7CEFC36977%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082602%7Cgb%7CEFC36317%2E1%7C.for.66036-69451.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.66036-69451.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.66036-69451.gi%7C284082602%7Cgb%7CEFC36317%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094585%7Cgb%7CEFC48219%2E1%7C.for.80675-81717.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.80675-81717.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.80675-81717.gi%7C284094585%7Cgb%7CEFC48219%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086165%7Cgb%7CEFC39843%2E1%7C.for.80961-82908.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.80961-82908.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.80961-82908.gi%7C284086165%7Cgb%7CEFC39843%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095450%7Cgb%7CEFC49081%2E1%7C.for.90632-92652.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.90632-92652.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.90632-92652.gi%7C284095450%7Cgb%7CEFC49081%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096532%7Cgb%7CEFC50160%2E1%7C.for.102826-104105.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.102826-104105.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.102826-104105.gi%7C284096532%7Cgb%7CEFC50160%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096604%7Cgb%7CEFC50232%2E1%7C.for.105563-107235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.105563-107235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.105563-107235.gi%7C284096604%7Cgb%7CEFC50232%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081521%7Cgb%7CEFC35491%2E1%7C.for.111090-112204.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.111090-112204.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.111090-112204.gi%7C284081521%7Cgb%7CEFC35491%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084639%7Cgb%7CEFC38329%2E1%7C.for.111030-113400.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.111030-113400.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.111030-113400.gi%7C284084639%7Cgb%7CEFC38329%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085362%7Cgb%7CEFC39046%2E1%7C.for.110985-113445.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.110985-113445.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.110985-113445.gi%7C284085362%7Cgb%7CEFC39046%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083208%7Cgb%7CEFC36914%2E1%7C.for.110076-113538.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.110076-113538.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.110076-113538.gi%7C284083208%7Cgb%7CEFC36914%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094695%7Cgb%7CEFC48328%2E1%7C.for.118409-122010.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.118409-122010.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.118409-122010.gi%7C284094695%7Cgb%7CEFC48328%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095109%7Cgb%7CEFC48741%2E1%7C.for.132648-134686.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.132648-134686.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.132648-134686.gi%7C284095109%7Cgb%7CEFC48741%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086161%7Cgb%7CEFC39839%2E1%7C.for.135931-138842.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.135931-138842.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.135931-138842.gi%7C284086161%7Cgb%7CEFC39839%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096519%7Cgb%7CEFC50147%2E1%7C.for.136030-138848.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.136030-138848.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.136030-138848.gi%7C284096519%7Cgb%7CEFC50147%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096247%7Cgb%7CEFC49875%2E1%7C.for.135931-138797.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.135931-138797.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.135931-138797.gi%7C284096247%7Cgb%7CEFC49875%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C25986841%7Cgb%7CAAM93756%2E1%7C.for.136051-138770.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.136051-138770.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.136051-138770.gi%7C25986841%7Cgb%7CAAM93756%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092652%7Cgb%7CEFC46293%2E1%7C.for.142341-144069.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142341-144069.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142341-144069.gi%7C284092652%7Cgb%7CEFC46293%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089938%7Cgb%7CEFC43592%2E1%7C.for.142602-143862.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142602-143862.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142602-143862.gi%7C284089938%7Cgb%7CEFC43592%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083518%7Cgb%7CEFC37220%2E1%7C.for.142308-144015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142308-144015.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142308-144015.gi%7C284083518%7Cgb%7CEFC37220%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095980%7Cgb%7CEFC49609%2E1%7C.for.142347-144039.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142347-144039.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142347-144039.gi%7C284095980%7Cgb%7CEFC49609%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091782%7Cgb%7CEFC45427%2E1%7C.for.142755-143961.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142755-143961.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142755-143961.gi%7C284091782%7Cgb%7CEFC45427%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085503%7Cgb%7CEFC39186%2E1%7C.for.142329-143964.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142329-143964.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142329-143964.gi%7C284085503%7Cgb%7CEFC39186%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093388%7Cgb%7CEFC47026%2E1%7C.for.142922-143862.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142922-143862.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142922-143862.gi%7C284093388%7Cgb%7CEFC47026%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095754%7Cgb%7CEFC49384%2E1%7C.for.142329-144069.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142329-144069.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142329-144069.gi%7C284095754%7Cgb%7CEFC49384%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096149%7Cgb%7CEFC49778%2E1%7C.for.144795-148300.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.144795-148300.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.144795-148300.gi%7C284096149%7Cgb%7CEFC49778%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C167966176%7Cgb%7CACA13169%2E1%7C.for.146940-147964.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.146940-147964.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.146940-147964.gi%7C167966176%7Cgb%7CACA13169%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092877%7Cgb%7CEFC46517%2E1%7C.for.147667-149081.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.147667-149081.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.147667-149081.gi%7C284092877%7Cgb%7CEFC46517%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092102%7Cgb%7CEFC45745%2E1%7C.for.152591-154551.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.152591-154551.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.152591-154551.gi%7C284092102%7Cgb%7CEFC45745%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096560%7Cgb%7CEFC50188%2E1%7C.for.157271-160187.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.157271-160187.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.157271-160187.gi%7C284096560%7Cgb%7CEFC50188%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097079%7Cgb%7CEFC50706%2E1%7C.for.170945-172743.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.170945-172743.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.170945-172743.gi%7C284097079%7Cgb%7CEFC50706%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080983%7Cgb%7CEFC35253%2E1%7C.for.186873-188374.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.186873-188374.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.186873-188374.gi%7C284080983%7Cgb%7CEFC35253%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081870%7Cgb%7CEFC35710%2E1%7C.for.187245-188218.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.187245-188218.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.187245-188218.gi%7C284081870%7Cgb%7CEFC35710%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096419%7Cgb%7CEFC50047%2E1%7C.for.187029-188311.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.187029-188311.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.187029-188311.gi%7C284096419%7Cgb%7CEFC50047%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084263%7Cgb%7CEFC37957%2E1%7C.for.187056-188302.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.187056-188302.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.187056-188302.gi%7C284084263%7Cgb%7CEFC37957%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090976%7Cgb%7CEFC44625%2E1%7C.for.186795-188311.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.186795-188311.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.186795-188311.gi%7C284090976%7Cgb%7CEFC44625%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082158%7Cgb%7CEFC35924%2E1%7C.for.186795-188311.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.186795-188311.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.186795-188311.gi%7C284082158%7Cgb%7CEFC35924%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094671%7Cgb%7CEFC48304%2E1%7C.for.186999-188311.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.186999-188311.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.186999-188311.gi%7C284094671%7Cgb%7CEFC48304%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086669%7Cgb%7CEFC40344%2E1%7C.for.187257-188377.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.187257-188377.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.187257-188377.gi%7C284086669%7Cgb%7CEFC40344%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084731%7Cgb%7CEFC38420%2E1%7C.for.188731-189859.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.188731-189859.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.188731-189859.gi%7C284084731%7Cgb%7CEFC38420%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091151%7Cgb%7CEFC44799%2E1%7C.for.188758-189922.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.188758-189922.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.188758-189922.gi%7C284091151%7Cgb%7CEFC44799%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092335%7Cgb%7CEFC45977%2E1%7C.for.189761-191601.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.189761-191601.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.189761-191601.gi%7C284092335%7Cgb%7CEFC45977%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084895%7Cgb%7CEFC38583%2E1%7C.for.192664-194631.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.192664-194631.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.192664-194631.gi%7C284084895%7Cgb%7CEFC38583%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084844%7Cgb%7CEFC38533%2E1%7C.for.192772-194592.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.192772-194592.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.192772-194592.gi%7C284084844%7Cgb%7CEFC38533%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096999%7Cgb%7CEFC50626%2E1%7C.for.195482-197340.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.195482-197340.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.195482-197340.gi%7C284096999%7Cgb%7CEFC50626%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090525%7Cgb%7CEFC44176%2E1%7C.for.204484-207515.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204484-207515.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204484-207515.gi%7C284090525%7Cgb%7CEFC44176%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092835%7Cgb%7CEFC46475%2E1%7C.for.206884-208643.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.206884-208643.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.206884-208643.gi%7C284092835%7Cgb%7CEFC46475%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087254%7Cgb%7CEFC40925%2E1%7C.for.206881-208613.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.206881-208613.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.206881-208613.gi%7C284087254%7Cgb%7CEFC40925%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082482%7Cgb%7CEFC36199%2E1%7C.for.210915-212620.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.210915-212620.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.210915-212620.gi%7C284082482%7Cgb%7CEFC36199%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080970%7Cgb%7CEFC35250%2E1%7C.for.226686-227677.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.226686-227677.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.226686-227677.gi%7C284080970%7Cgb%7CEFC35250%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092584%7Cgb%7CEFC46225%2E1%7C.for.228372-230302.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.228372-230302.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.228372-230302.gi%7C284092584%7Cgb%7CEFC46225%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092876%7Cgb%7CEFC46516%2E1%7C.for.235910-238395.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.235910-238395.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.235910-238395.gi%7C284092876%7Cgb%7CEFC46516%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091153%7Cgb%7CEFC44801%2E1%7C.for.241641-243023.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.241641-243023.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.241641-243023.gi%7C284091153%7Cgb%7CEFC44801%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090946%7Cgb%7CEFC44595%2E1%7C.for.241626-243062.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.241626-243062.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.241626-243062.gi%7C284090946%7Cgb%7CEFC44595%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092322%7Cgb%7CEFC45964%2E1%7C.for.241596-243501.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.241596-243501.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.241596-243501.gi%7C284092322%7Cgb%7CEFC45964%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083025%7Cgb%7CEFC36733%2E1%7C.for.244560-245581.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.244560-245581.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.244560-245581.gi%7C284083025%7Cgb%7CEFC36733%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093562%7Cgb%7CEFC47199%2E1%7C.for.244548-245870.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.244548-245870.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.244548-245870.gi%7C284093562%7Cgb%7CEFC47199%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091741%7Cgb%7CEFC45386%2E1%7C.for.244509-245861.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.244509-245861.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.244509-245861.gi%7C284091741%7Cgb%7CEFC45386%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092533%7Cgb%7CEFC46175%2E1%7C.for.247335-249267.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.247335-249267.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.247335-249267.gi%7C284092533%7Cgb%7CEFC46175%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:36 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:29 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 2 ...processing 1 of 2 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:50 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:50 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:50 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:50 now processing 0 total clusters:50 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:50 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:50 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:50 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:59 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:59 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:59 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.9352-10168.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.9352-10168.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.9352-10168.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.14463-15372.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.14463-15372.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.14463-15372.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.18981-32275.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.18981-32275.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.18981-32275.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.38696-44373.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.38696-44373.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.38696-44373.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.46148-51894.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.46148-51894.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.46148-51894.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.61731-63443.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.61731-63443.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.61731-63443.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.70279-71363.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.70279-71363.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.70279-71363.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.80874-81517.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.80874-81517.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.80874-81517.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.86239-87767.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.86239-87767.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.86239-87767.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.90388-93132.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.90388-93132.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.90388-93132.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.99226-100492.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.99226-100492.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.99226-100492.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.103005-107100.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.103005-107100.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.103005-107100.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.108829-109885.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.108829-109885.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.108829-109885.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.116023-117455.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.116023-117455.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.116023-117455.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.142507-144109.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.142507-144109.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.142507-144109.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.146252-148124.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.146252-148124.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.146252-148124.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.150432-151691.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.150432-151691.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.150432-151691.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.152337-154351.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.152337-154351.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.152337-154351.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.167493-169791.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.167493-169791.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.167493-169791.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.183953-188177.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.183953-188177.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.183953-188177.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.189960-191401.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.189960-191401.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.189960-191401.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.195681-197140.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.195681-197140.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.195681-197140.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.203899-204868.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.203899-204868.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.203899-204868.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.213061-214168.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.213061-214168.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.213061-214168.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.217919-218994.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.217919-218994.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.217919-218994.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.222876-224478.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.222876-224478.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.222876-224478.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.228571-230102.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.228571-230102.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.228571-230102.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.231305-232448.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.231305-232448.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.231305-232448.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.238438-243544.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.238438-243544.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.238438-243544.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.247385-250515.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.247385-250515.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.247385-250515.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.6536-7536.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.6536-7536.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.6536-7536.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.10977-13017.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.10977-13017.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.10977-13017.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.13115-14844.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.13115-14844.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.13115-14844.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.17047-18257.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.17047-18257.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.17047-18257.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.32275-34205.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.32275-34205.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.32275-34205.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.36077-38683.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.36077-38683.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.36077-38683.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.51937-57153.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.51937-57153.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.51937-57153.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.57523-59134.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.57523-59134.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.57523-59134.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.60008-61695.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.60008-61695.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.60008-61695.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.63036-64109.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.63036-64109.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.63036-64109.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/40_0.66235-70356.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/40_0.66235-70356.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/40_0.66235-70356.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/41_0.71031-71995.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/41_0.71031-71995.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/41_0.71031-71995.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/42_0.72195-73370.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/42_0.72195-73370.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/42_0.72195-73370.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/43_0.74091-78667.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/43_0.74091-78667.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/43_0.74091-78667.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/44_0.81127-82903.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/44_0.81127-82903.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/44_0.81127-82903.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/45_0.85294-86152.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/45_0.85294-86152.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/45_0.85294-86152.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/46_0.87986-88898.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/46_0.87986-88898.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/46_0.87986-88898.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/47_0.93752-95344.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/47_0.93752-95344.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/47_0.93752-95344.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/48_0.110275-115655.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/48_0.110275-115655.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/48_0.110275-115655.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/49_0.118582-121986.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/49_0.118582-121986.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/49_0.118582-121986.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/50_0.122183-131308.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/50_0.122183-131308.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/50_0.122183-131308.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/51_0.132669-135499.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/51_0.132669-135499.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/51_0.132669-135499.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/52_0.136097-138682.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/52_0.136097-138682.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/52_0.136097-138682.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/53_0.141223-142230.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/53_0.141223-142230.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/53_0.141223-142230.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/54_0.147866-148881.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/54_0.147866-148881.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/54_0.147866-148881.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/55_0.157470-159987.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/55_0.157470-159987.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/55_0.157470-159987.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/56_0.159998-161432.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/56_0.159998-161432.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/56_0.159998-161432.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/57_0.167005-167926.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/57_0.167005-167926.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/57_0.167005-167926.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/58_0.169548-170498.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/58_0.169548-170498.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/58_0.169548-170498.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/59_0.171144-172543.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/59_0.171144-172543.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/59_0.171144-172543.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/60_0.188930-189942.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/60_0.188930-189942.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/60_0.188930-189942.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/61_0.191954-194431.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/61_0.191954-194431.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/61_0.191954-194431.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/62_0.200842-201690.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/62_0.200842-201690.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/62_0.200842-201690.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/63_0.204518-208443.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/63_0.204518-208443.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/63_0.204518-208443.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/64_0.211114-212420.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/64_0.211114-212420.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/64_0.211114-212420.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/65_0.213914-214887.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/65_0.213914-214887.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/65_0.213914-214887.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/66_0.220064-221720.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/66_0.220064-221720.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/66_0.220064-221720.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/67_0.227763-228614.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/67_0.227763-228614.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/67_0.227763-228614.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/68_0.236109-238283.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/68_0.236109-238283.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/68_0.236109-238283.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/69_0.243175-245670.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/69_0.243175-245670.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/69_0.243175-245670.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/70_0.250116-250989.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/70_0.250116-250989.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/70_0.250116-250989.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C24 Length: 107845 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:2 current j:0 j_size:2 current j:1 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C24.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C24.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:6 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1193%7Clate.for.1-1367.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.1-1367.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.1-1367.120301b_Contig1193%7Clate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3787%7Clate.for.1-1517.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.1-1517.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.1-1517.Ar_EST_120301b_c3787%7Clate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14331%7Ccls.for.3201-4608.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.3201-4608.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.3201-4608.Ar_EST_120301b_c14331%7Ccls.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14231%7Cprotein.for.4815-6119.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.4815-6119.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.4815-6119.Ar_EST_120301b_c14231%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18348%7Ccll.for.14932-16445.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.14932-16445.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.14932-16445.Ar_EST_120301b_c18348%7Ccll.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19847%7Cgpi.for.16578-18442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.16578-18442.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.16578-18442.Ar_EST_120301b_c19847%7Cgpi.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11791%7Cgpi.for.17765-19120.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.17765-19120.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.17765-19120.Ar_EST_120301b_c11791%7Cgpi.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15639%7Ceb3rody02gk4bl.for.23474-26040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.23474-26040.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.23474-26040.Ar_EST_120301b_c15639%7Ceb3rody02gk4bl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1030%7Cprotein.for.23403-26040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.23403-26040.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.23403-26040.Ar_EST_120301b_c1030%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17732%7Cest_ssal_evd_45206.for.26353-27684.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.26353-27684.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.26353-27684.Ar_EST_120301b_c17732%7Cest_ssal_evd_45206.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18177%7Chx195251.for.28612-29656.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.28612-29656.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.28612-29656.Ar_EST_120301b_c18177%7Chx195251.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12724%7Cu4.for.34991-36090.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.34991-36090.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.34991-36090.Ar_EST_120301b_c12724%7Cu4.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8833%7Cprotein.for.35163-36584.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.35163-36584.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.35163-36584.Ar_EST_120301b_c8833%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13085%7C255376557.for.38544-39869.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.38544-39869.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.38544-39869.Ar_EST_120301b_c13085%7C255376557.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3699%7Ctpr.for.41370-43105.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.41370-43105.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.41370-43105.Ar_EST_120301b_c3699%7Ctpr.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c505%7Ccytochrome.for.42948-44200.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.42948-44200.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.42948-44200.Ar_EST_120301b_c505%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15493%7Chypothetical.for.49628-50870.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.49628-50870.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.49628-50870.Ar_EST_120301b_c15493%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2223%7C3-hydroxyisobutyryl-.for.50334-51728.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.50334-51728.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.50334-51728.Ar_EST_120301b_c2223%7C3-hydroxyisobutyryl-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13348%7C---NA---.for.50969-52069.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.50969-52069.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.50969-52069.Ar_EST_120301b_c13348%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8134%7CPJ1444.for.51579-53657.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.51579-53657.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.51579-53657.Ar_EST_120301b_c8134%7CPJ1444.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18835%7C---NA---.for.53933-55329.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.53933-55329.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.53933-55329.Ar_EST_120301b_c18835%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7681%7Ccell.for.53935-55251.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.53935-55251.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.53935-55251.Ar_EST_120301b_rep_c7681%7Ccell.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20521%7C---NA---.for.53935-55086.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.53935-55086.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.53935-55086.Ar_EST_120301b_rep_c20521%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13477%7C---NA---.for.56717-57809.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.56717-57809.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.56717-57809.Ar_EST_120301b_c13477%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7315%7Coxysterol-binding.for.57696-59731.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.57696-59731.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.57696-59731.Ar_EST_120301b_rep_c7315%7Coxysterol-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7217%7Coxysterol-binding.for.57465-59619.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.57465-59619.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.57465-59619.Ar_EST_120301b_rep_c7217%7Coxysterol-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7183%7Coxysterol-binding.for.57606-59167.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.57606-59167.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.57606-59167.Ar_EST_120301b_rep_c7183%7Coxysterol-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7334%7Coxysterol.for.58089-59443.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.58089-59443.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.58089-59443.Ar_EST_120301b_rep_c7334%7Coxysterol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12557%7Cfm132192.for.59433-60491.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.59433-60491.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.59433-60491.Ar_EST_120301b_c12557%7Cfm132192.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18461%7Cbactericidal.for.63637-65201.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.63637-65201.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.63637-65201.Ar_EST_120301b_c18461%7Cbactericidal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9729%7Cmucin-.for.66148-67658.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.66148-67658.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.66148-67658.Ar_EST_120301b_c9729%7Cmucin-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9330%7Cuvb-resistance.for.68944-70534.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.68944-70534.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.68944-70534.Ar_EST_120301b_c9330%7Cuvb-resistance.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10894%7Cdomain-containing.for.71789-72913.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.71789-72913.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.71789-72913.Ar_EST_120301b_c10894%7Cdomain-containing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3071%7Cdomain-containing.for.70951-72815.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.70951-72815.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.70951-72815.Ar_EST_120301b_c3071%7Cdomain-containing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8995%7Cdomain-containing.for.72568-74088.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.72568-74088.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.72568-74088.Ar_EST_120301b_c8995%7Cdomain-containing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3896%7Csenescence-associated.for.72282-73682.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.72282-73682.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.72282-73682.Ar_EST_120301b_c3896%7Csenescence-associated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1150%7Caara_dicdi.for.73122-74881.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.73122-74881.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.73122-74881.Ar_EST_120301b_c1150%7Caara_dicdi.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9186%7C40s.for.76695-77870.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.76695-77870.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.76695-77870.Ar_EST_120301b_rep_c9186%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1960%7Cmeloidogyne.for.78849-80178.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.78849-80178.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.78849-80178.Ar_EST_120301b_c1960%7Cmeloidogyne.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10660%7Canolis.for.79275-80557.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.79275-80557.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.79275-80557.Ar_EST_120301b_c10660%7Canolis.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16062%7Cmitochondrial.for.79842-81299.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.79842-81299.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.79842-81299.Ar_EST_120301b_c16062%7Cmitochondrial.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18366%7C---NA---.for.81065-82374.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.81065-82374.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.81065-82374.Ar_EST_120301b_c18366%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8209%7Cudp-glucose.for.82553-83976.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.82553-83976.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.82553-83976.Ar_EST_120301b_c8209%7Cudp-glucose.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19592%7Cudp-glucose.for.82194-83523.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.82194-83523.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.82194-83523.Ar_EST_120301b_c19592%7Cudp-glucose.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c201%7Cperoxidase.for.89062-90517.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.89062-90517.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.89062-90517.Ar_EST_120301b_c201%7Cperoxidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14840%7Cankyrin.for.90146-91704.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.90146-91704.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.90146-91704.Ar_EST_120301b_c14840%7Cankyrin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17608%7Chydroxycinnamoyl-coenzyme.for.91385-92665.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.91385-92665.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.91385-92665.Ar_EST_120301b_c17608%7Chydroxycinnamoyl-coenzyme.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1727%7Cprotein.for.93442-94838.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.93442-94838.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.93442-94838.Ar_EST_120301b_c1727%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12096%7Cbj057728.for.94158-95401.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.94158-95401.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.94158-95401.Ar_EST_120301b_c12096%7Cbj057728.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2186%7C03ju.for.94951-96270.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.94951-96270.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.94951-96270.Ar_EST_120301b_c2186%7C03ju.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig59%7Cprotein.for.96335-98895.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.96335-98895.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.96335-98895.120301b_Contig59%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1249%7Ctype.for.100365-101735.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.100365-101735.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.100365-101735.Ar_EST_120301b_c1249%7Ctype.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6838%7Cchaperone.for.99052-100777.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.99052-100777.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.99052-100777.Ar_EST_120301b_rep_c6838%7Cchaperone.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig246%7Cprotein.for.98366-101485.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.98366-101485.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.98366-101485.120301b_Contig246%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10371%7Cviral.for.101874-103650.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.101874-103650.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.101874-103650.Ar_EST_120301b_c10371%7Cviral.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1846%7Ccu580856.for.103580-104910.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.103580-104910.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.103580-104910.Ar_EST_120301b_c1846%7Ccu580856.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10785%7C---NA---.for.105911-107157.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.105911-107157.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.105911-107157.Ar_EST_120301b_c10785%7C---NA---.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:34 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:27 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:43 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:50 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:49 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:39 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:32 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:42 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:38 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:19 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093049%7Cgb%7CEFC46688%2E1%7C.for.16805-18843.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.16805-18843.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.16805-18843.gi%7C284093049%7Cgb%7CEFC46688%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082549%7Cgb%7CEFC36265%2E1%7C.for.18864-20806.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.18864-20806.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.18864-20806.gi%7C284082549%7Cgb%7CEFC36265%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.30087-33385.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33385.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33385.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.for.30099-33343.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33343.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33343.gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.for.30105-33424.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30105-33424.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30105-33424.gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085983%7Cgb%7CEFC39663%2E1%7C.for.30096-33337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30096-33337.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30096-33337.gi%7C284085983%7Cgb%7CEFC39663%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.for.30099-33337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33337.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33337.gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.for.30102-33373.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33373.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33373.gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.for.30099-32320.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-32320.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-32320.gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088147%7Cgb%7CEFC41812%2E1%7C.for.30102-33343.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33343.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33343.gi%7C284088147%7Cgb%7CEFC41812%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.for.30102-33400.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33400.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33400.gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.for.30093-33382.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30093-33382.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30093-33382.gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.for.30087-33394.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33394.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33394.gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.for.30105-33337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30105-33337.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30105-33337.gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.for.30087-33346.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33346.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33346.gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082687%7Cgb%7CEFC36400%2E1%7C.for.30087-33403.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33403.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33403.gi%7C284082687%7Cgb%7CEFC36400%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091293%7Cgb%7CEFC44940%2E1%7C.for.30090-33337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30090-33337.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30090-33337.gi%7C284091293%7Cgb%7CEFC44940%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.for.30093-33346.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30093-33346.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30093-33346.gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.for.30099-33343.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33343.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33343.gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097002%7Cgb%7CEFC50629%2E1%7C.for.30096-33394.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30096-33394.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30096-33394.gi%7C284097002%7Cgb%7CEFC50629%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.for.30099-33469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33469.gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092908%7Cgb%7CEFC46548%2E1%7C.for.30099-33346.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33346.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33346.gi%7C284092908%7Cgb%7CEFC46548%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.for.30099-33403.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33403.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33403.gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.for.30072-33400.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30072-33400.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30072-33400.gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.for.30048-33337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30048-33337.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30048-33337.gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094023%7Cgb%7CEFC47658%2E1%7C.for.29985-33346.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.29985-33346.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.29985-33346.gi%7C284094023%7Cgb%7CEFC47658%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.for.30102-33343.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33343.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33343.gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.for.30105-31525.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30105-31525.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30105-31525.gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092204%7Cgb%7CEFC45847%2E1%7C.for.30099-33394.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33394.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33394.gi%7C284092204%7Cgb%7CEFC45847%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.for.30099-33337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33337.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33337.gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081757%7Cgb%7CEFC35637%2E1%7C.for.30099-33409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33409.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33409.gi%7C284081757%7Cgb%7CEFC35637%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.for.30042-33352.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30042-33352.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30042-33352.gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.for.30102-33340.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33340.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33340.gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.for.30015-32359.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30015-32359.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30015-32359.gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085299%7Cgb%7CEFC38984%2E1%7C.for.30087-33346.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33346.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33346.gi%7C284085299%7Cgb%7CEFC38984%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087676%7Cgb%7CEFC41344%2E1%7C.for.30093-33430.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30093-33430.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30093-33430.gi%7C284087676%7Cgb%7CEFC41344%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080808%7Cgb%7CEFC35194%2E1%7C.for.30102-33337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33337.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33337.gi%7C284080808%7Cgb%7CEFC35194%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.for.30132-32341.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30132-32341.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30132-32341.gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091375%7Cgb%7CEFC45022%2E1%7C.for.39920-41115.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.39920-41115.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.39920-41115.gi%7C284091375%7Cgb%7CEFC45022%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087092%7Cgb%7CEFC40764%2E1%7C.for.39695-41100.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.39695-41100.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.39695-41100.gi%7C284087092%7Cgb%7CEFC40764%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089341%7Cgb%7CEFC42999%2E1%7C.for.43545-45547.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.43545-45547.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.43545-45547.gi%7C284089341%7Cgb%7CEFC42999%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092455%7Cgb%7CEFC46097%2E1%7C.for.43533-45508.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.43533-45508.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.43533-45508.gi%7C284092455%7Cgb%7CEFC46097%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087860%7Cgb%7CEFC41527%2E1%7C.for.44061-45661.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.44061-45661.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.44061-45661.gi%7C284087860%7Cgb%7CEFC41527%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092586%7Cgb%7CEFC46227%2E1%7C.for.65301-66295.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.65301-66295.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.65301-66295.gi%7C284092586%7Cgb%7CEFC46227%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091528%7Cgb%7CEFC45174%2E1%7C.for.76723-77714.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.76723-77714.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.76723-77714.gi%7C284091528%7Cgb%7CEFC45174%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087484%7Cgb%7CEFC41153%2E1%7C.for.79834-81594.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.79834-81594.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.79834-81594.gi%7C284087484%7Cgb%7CEFC41153%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:8 now processing 0 total clusters:8 now processing 0 total clusters:8 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:8 now processing 0 total clusters:8 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:8 now processing 0 total clusters:8 now processing 0 total clusters:8 now processing 0 in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:5 now processing 0 total clusters:5 now processing 0 ...processing 0 of 24 ...processing 1 of 24 ...processing 2 of 24 ...processing 3 of 24 ...processing 4 of 24 ...processing 5 of 24 ...processing 6 of 24 ...processing 7 of 24 ...processing 8 of 24 ...processing 9 of 24 ...processing 10 of 24 ...processing 11 of 24 ...processing 12 of 24 ...processing 13 of 24 ...processing 14 of 24 ...processing 15 of 24 ...processing 16 of 24 ...processing 17 of 24 ...processing 18 of 24 ...processing 19 of 24 ...processing 20 of 24 ...processing 21 of 24 ...processing 22 of 24 ...processing 23 of 24 total clusters:5 now processing 0 total clusters:5 now processing 0 total clusters:5 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:17 now processing 0 total clusters:17 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 19 ...processing 1 of 19 ...processing 2 of 19 ...processing 3 of 19 ...processing 4 of 19 ...processing 5 of 19 ...processing 6 of 19 ...processing 7 of 19 ...processing 8 of 19 ...processing 9 of 19 ...processing 10 of 19 ...processing 11 of 19 ...processing 12 of 19 ...processing 13 of 19 ...processing 14 of 19 ...processing 15 of 19 ...processing 16 of 19 ...processing 17 of 19 ...processing 18 of 19 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.15131-16245.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.15131-16245.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.15131-16245.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.26552-27484.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.26552-27484.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.26552-27484.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.28610-29472.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.28610-29472.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.28610-29472.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.38743-39674.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.38743-39674.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.38743-39674.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.41556-42905.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.41556-42905.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.41556-42905.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.43142-44000.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.43142-44000.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.43142-44000.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.57628-59531.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.57628-59531.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.57628-59531.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.63821-65003.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.63821-65003.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.63821-65003.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.79048-80363.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.79048-80363.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.79048-80363.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.81264-82174.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.81264-82174.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.81264-82174.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.82393-83776.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.82393-83776.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.82393-83776.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.89253-90332.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.89253-90332.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.89253-90332.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.93641-94643.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.93641-94643.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.93641-94643.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.95103-96070.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.95103-96070.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.95103-96070.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.98565-101535.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.98565-101535.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.98565-101535.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.102073-103452.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.102073-103452.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.102073-103452.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.106110-106962.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.106110-106962.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.106110-106962.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.0-1317.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.0-1317.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.0-1317.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.3400-5919.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.3400-5919.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.3400-5919.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.16775-18643.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.16775-18643.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.16775-18643.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.19063-20606.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.19063-20606.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.19063-20606.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.23602-24576.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.23602-24576.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.23602-24576.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.30214-33224.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.30214-33224.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.30214-33224.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.35162-36384.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.35162-36384.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.35162-36384.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.40119-40915.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.40119-40915.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.40119-40915.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.43732-45461.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.43732-45461.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.43732-45461.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.49827-53513.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.49827-53513.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.49827-53513.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.54132-55129.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.54132-55129.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.54132-55129.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.56916-57609.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.56916-57609.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.56916-57609.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.59632-60457.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.59632-60457.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.59632-60457.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.65500-66095.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.65500-66095.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.65500-66095.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.66347-67458.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.66347-67458.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.66347-67458.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.69135-70334.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.69135-70334.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.69135-70334.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.71150-74681.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.71150-74681.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.71150-74681.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.76922-77514.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.76922-77514.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.76922-77514.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.80033-81394.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.80033-81394.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.80033-81394.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.90345-91504.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.90345-91504.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.90345-91504.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.91584-92465.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.91584-92465.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.91584-92465.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.103777-104710.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.103777-104710.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.103777-104710.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C25 Length: 12557 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:1 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C25.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C25.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12213%7Cserum.for.4686-6013.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.4686-6013.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.4686-6013.Ar_EST_120301b_c12213%7Cserum.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13871%7Cserum.for.4474-5739.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.4474-5739.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.4474-5739.Ar_EST_120301b_c13871%7Cserum.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16373%7Cserum.for.4474-6013.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.4474-6013.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.4474-6013.Ar_EST_120301b_c16373%7Cserum.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17460%7Cpredicted.for.7767-9114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.7767-9114.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.7767-9114.Ar_EST_120301b_c17460%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12919%7Cca48en0002_i.for.8552-9892.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.8552-9892.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.8552-9892.Ar_EST_120301b_c12919%7Cca48en0002_i.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2764%7Cnadh.for.11528-12557.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.11528-12557.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.11528-12557.Ar_EST_120301b_c2764%7Cnadh.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:5 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:5 now processing 0 total clusters:5 now processing 0 total clusters:5 now processing 0 total clusters:5 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:7 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:10 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:5 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:9 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:6 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:14 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:12 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:10 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:5 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:8 hits collecting blastx reports polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091972%7Cgb%7CEFC45616%2E1%7C.for.5442-6683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.5442-6683.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.5442-6683.gi%7C284091972%7Cgb%7CEFC45616%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:4 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:4 now processing 0 total clusters:4 now processing 0 total clusters:4 now processing 0 in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:1 now processing 0 annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.4673-5813.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.4673-5813.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.4673-5813.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.7966-9692.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.7966-9692.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.7966-9692.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.11727-12557.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.11727-12557.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.11727-12557.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C26 Length: 30228 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:3 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:1 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C26.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C26.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1435%7Cshort-chain.for.1-966.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1-966.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1-966.Ar_EST_120301b_c1435%7Cshort-chain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4547%7Cpeptidyl-prolyl.for.533-2079.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.533-2079.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.533-2079.Ar_EST_120301b_rep_c4547%7Cpeptidyl-prolyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13051%7Cdiphosphomevalonate.for.2604-3822.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.2604-3822.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.2604-3822.Ar_EST_120301b_c13051%7Cdiphosphomevalonate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9753%7Cdiphosphomevalonate.for.3048-4517.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.3048-4517.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.3048-4517.Ar_EST_120301b_c9753%7Cdiphosphomevalonate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17359%7Cpredicted.for.4191-5513.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.4191-5513.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.4191-5513.Ar_EST_120301b_c17359%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16806%7Cheat.for.6535-7644.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6535-7644.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6535-7644.Ar_EST_120301b_rep_c16806%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6111%7Cunq118-.for.7137-8101.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.7137-8101.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.7137-8101.Ar_EST_120301b_rep_c6111%7Cunq118-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20263%7Cm105c12r.for.6734-7787.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6734-7787.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6734-7787.Ar_EST_120301b_rep_c20263%7Cm105c12r.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6339%7C---NA---.for.6541-7790.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6541-7790.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6541-7790.Ar_EST_120301b_rep_c6339%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4077%7Cprotein.for.6643-8283.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6643-8283.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6643-8283.Ar_EST_120301b_rep_c4077%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20244%7Clim.for.6558-7789.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6558-7789.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6558-7789.Ar_EST_120301b_rep_c20244%7Clim.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11314%7Cgtp-binding.for.6970-8126.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6970-8126.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6970-8126.Ar_EST_120301b_rep_c11314%7Cgtp-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20404%7Cprotein.for.7103-8081.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.7103-8081.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.7103-8081.Ar_EST_120301b_rep_c20404%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19526%7Ccazo.for.6535-7828.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6535-7828.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6535-7828.Ar_EST_120301b_rep_c19526%7Ccazo.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9415%7C000826otya999025ht.for.7770-9085.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.7770-9085.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.7770-9085.Ar_EST_120301b_c9415%7C000826otya999025ht.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13240%7Cprotein.for.12830-14321.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.12830-14321.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.12830-14321.Ar_EST_120301b_c13240%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4447%7Cpathogenesis-related.for.16744-18213.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.16744-18213.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.16744-18213.Ar_EST_120301b_rep_c4447%7Cpathogenesis-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1392%7Cglycine.for.18463-20388.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.18463-20388.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.18463-20388.120301b_Contig1392%7Cglycine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig112%7Cglycine.for.19277-20741.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.19277-20741.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.19277-20741.120301b_Contig112%7Cglycine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2532%7Cglycine.for.17984-19620.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.17984-19620.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.17984-19620.Ar_EST_120301b_c2532%7Cglycine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2582%7Cglycine.for.20162-21458.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.20162-21458.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.20162-21458.Ar_EST_120301b_c2582%7Cglycine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1819%7Cglycine.for.20617-22092.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.20617-22092.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.20617-22092.Ar_EST_120301b_c1819%7Cglycine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18083%7Cpredicted.for.21304-22699.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.21304-22699.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.21304-22699.Ar_EST_120301b_c18083%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1288%7Csec1.for.22782-24229.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.22782-24229.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.22782-24229.Ar_EST_120301b_c1288%7Csec1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4755%7Cring.for.22158-23653.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.22158-23653.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.22158-23653.Ar_EST_120301b_rep_c4755%7Cring.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13389%7Cproliferation-associated.for.22647-23597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.22647-23597.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.22647-23597.Ar_EST_120301b_rep_c13389%7Cproliferation-associated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18239%7Cprotein.for.24795-26024.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.24795-26024.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.24795-26024.Ar_EST_120301b_c18239%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14682%7Cfy377012.for.25095-26211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.25095-26211.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.25095-26211.Ar_EST_120301b_c14682%7Cfy377012.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12457%7Cdk457596.for.28008-29513.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.28008-29513.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.28008-29513.Ar_EST_120301b_c12457%7Cdk457596.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:43 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:30 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:34 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:46 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:30 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:39 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:24 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:33 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:35 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:29 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081155%7Cgb%7CEFC35313%2E1%7C.for.767-2080.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2080.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2080.gi%7C284081155%7Cgb%7CEFC35313%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092983%7Cgb%7CEFC46623%2E1%7C.for.767-2080.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2080.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2080.gi%7C284092983%7Cgb%7CEFC46623%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096875%7Cgb%7CEFC50502%2E1%7C.for.803-2092.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.803-2092.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.803-2092.gi%7C284096875%7Cgb%7CEFC50502%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090267%7Cgb%7CEFC43920%2E1%7C.for.767-2017.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2017.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2017.gi%7C284090267%7Cgb%7CEFC43920%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092579%7Cgb%7CEFC46220%2E1%7C.for.800-2023.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.800-2023.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.800-2023.gi%7C284092579%7Cgb%7CEFC46220%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093592%7Cgb%7CEFC47229%2E1%7C.for.972-2062.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.972-2062.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.972-2062.gi%7C284093592%7Cgb%7CEFC47229%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089692%7Cgb%7CEFC43348%2E1%7C.for.800-2068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.800-2068.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.800-2068.gi%7C284089692%7Cgb%7CEFC43348%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093109%7Cgb%7CEFC46748%2E1%7C.for.800-2023.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.800-2023.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.800-2023.gi%7C284093109%7Cgb%7CEFC46748%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085514%7Cgb%7CEFC39197%2E1%7C.for.542-2104.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.542-2104.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.542-2104.gi%7C284085514%7Cgb%7CEFC39197%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088464%7Cgb%7CEFC42127%2E1%7C.for.767-2020.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2020.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2020.gi%7C284088464%7Cgb%7CEFC42127%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094883%7Cgb%7CEFC48516%2E1%7C.for.752-2098.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.752-2098.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.752-2098.gi%7C284094883%7Cgb%7CEFC48516%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095464%7Cgb%7CEFC49095%2E1%7C.for.767-2074.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2074.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2074.gi%7C284095464%7Cgb%7CEFC49095%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090503%7Cgb%7CEFC44154%2E1%7C.for.767-2074.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2074.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2074.gi%7C284090503%7Cgb%7CEFC44154%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086458%7Cgb%7CEFC40134%2E1%7C.for.767-1996.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-1996.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-1996.gi%7C284086458%7Cgb%7CEFC40134%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090230%7Cgb%7CEFC43883%2E1%7C.for.1576-3068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1576-3068.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1576-3068.gi%7C284090230%7Cgb%7CEFC43883%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081326%7Cgb%7CEFC35393%2E1%7C.for.1795-2795.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1795-2795.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1795-2795.gi%7C284081326%7Cgb%7CEFC35393%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092568%7Cgb%7CEFC46209%2E1%7C.for.1464-3077.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1464-3077.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1464-3077.gi%7C284092568%7Cgb%7CEFC46209%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089451%7Cgb%7CEFC43108%2E1%7C.for.1573-3146.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1573-3146.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1573-3146.gi%7C284089451%7Cgb%7CEFC43108%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089702%7Cgb%7CEFC43358%2E1%7C.for.1735-2825.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1735-2825.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1735-2825.gi%7C284089702%7Cgb%7CEFC43358%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084444%7Cgb%7CEFC38137%2E1%7C.for.1341-3107.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1341-3107.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1341-3107.gi%7C284084444%7Cgb%7CEFC38137%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082844%7Cgb%7CEFC36555%2E1%7C.for.2605-4508.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.2605-4508.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.2605-4508.gi%7C284082844%7Cgb%7CEFC36555%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091841%7Cgb%7CEFC45486%2E1%7C.for.18327-22000.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.18327-22000.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.18327-22000.gi%7C284091841%7Cgb%7CEFC45486%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081842%7Cgb%7CEFC35690%2E1%7C.for.22129-23267.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.22129-23267.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.22129-23267.gi%7C284081842%7Cgb%7CEFC35690%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:5 now processing 0 ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:5 now processing 0 total clusters:5 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:5 now processing 0 total clusters:5 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:5 now processing 0 ...processing 0 of 11 ...processing 1 of 11 ...processing 2 of 11 ...processing 3 of 11 ...processing 4 of 11 ...processing 5 of 11 ...processing 6 of 11 ...processing 7 of 11 ...processing 8 of 11 ...processing 9 of 11 ...processing 10 of 11 total clusters:5 now processing 0 total clusters:5 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:5 now processing 0 total clusters:5 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:7 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:7 now processing 0 total clusters:7 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:7 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.741-1904.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.741-1904.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.741-1904.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.4379-5313.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.4379-5313.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.4379-5313.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.6734-7628.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.6734-7628.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.6734-7628.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.7969-8885.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.7969-8885.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.7969-8885.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.18183-21892.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.18183-21892.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.18183-21892.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.28207-29347.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.28207-29347.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.28207-29347.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.0-766.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.0-766.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.0-766.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.1540-4317.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.1540-4317.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.1540-4317.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.13029-14137.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.13029-14137.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.13029-14137.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.16943-18013.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.16943-18013.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.16943-18013.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.21503-24123.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.21503-24123.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.21503-24123.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C28 Length: 140015 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C28.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C28.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:4 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16986%7Cvcdc13845.for.460-1786.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.460-1786.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.460-1786.Ar_EST_120301b_c16986%7Cvcdc13845.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11015%7Cmgc84566.for.4593-6206.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.4593-6206.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.4593-6206.Ar_EST_120301b_c11015%7Cmgc84566.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11527%7Chypothetical.for.5457-7204.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.5457-7204.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.5457-7204.Ar_EST_120301b_c11527%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16112%7Cvps28.for.5450-6585.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.5450-6585.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.5450-6585.Ar_EST_120301b_c16112%7Cvps28.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1268%7Creep3.for.7225-8749.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.7225-8749.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.7225-8749.Ar_EST_120301b_c1268%7Creep3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12533%7C---NA---.for.9019-10308.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.9019-10308.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.9019-10308.Ar_EST_120301b_c12533%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1967%7C3.for.7966-10076.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.7966-10076.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.7966-10076.Ar_EST_120301b_c1967%7C3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10582%7Cqct.for.9913-11212.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.9913-11212.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.9913-11212.Ar_EST_120301b_c10582%7Cqct.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c343%7Ckelch.for.10506-11991.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.10506-11991.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.10506-11991.Ar_EST_120301b_c343%7Ckelch.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3655%7Calpha-mannosidase.for.11467-14155.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.11467-14155.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.11467-14155.Ar_EST_120301b_c3655%7Calpha-mannosidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c499%7Cglycosyl.for.13565-15516.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.13565-15516.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.13565-15516.Ar_EST_120301b_c499%7Cglycosyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c650%7Cfq204399.for.15296-16768.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.15296-16768.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.15296-16768.Ar_EST_120301b_c650%7Cfq204399.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12233%7Cautophagy-related.for.16224-17667.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.16224-17667.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.16224-17667.Ar_EST_120301b_c12233%7Cautophagy-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10021%7Ceukaryotic.for.19860-21179.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.19860-21179.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.19860-21179.Ar_EST_120301b_c10021%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13248%7Chypothetical.for.26913-28208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.26913-28208.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.26913-28208.Ar_EST_120301b_c13248%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3283%7Cdenn.for.27515-29594.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.27515-29594.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.27515-29594.Ar_EST_120301b_c3283%7Cdenn.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13847%7Cprotein.for.34193-35519.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.34193-35519.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.34193-35519.Ar_EST_120301b_c13847%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15634%7Cdna.for.35289-36838.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.35289-36838.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.35289-36838.Ar_EST_120301b_c15634%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9717%7CUncharacterized.for.38490-40142.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.38490-40142.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.38490-40142.Ar_EST_120301b_c9717%7CUncharacterized.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15012%7Cleukocyte.for.39997-41185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.39997-41185.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.39997-41185.Ar_EST_120301b_c15012%7Cleukocyte.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10635%7Cserine.for.40921-42054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40921-42054.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40921-42054.Ar_EST_120301b_c10635%7Cserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig650%7Cserine.for.41091-43327.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41091-43327.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41091-43327.120301b_Contig650%7Cserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c731%7Cfn028540.for.42571-43798.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.42571-43798.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.42571-43798.Ar_EST_120301b_c731%7Cfn028540.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9323%7Caplysia.for.42974-44766.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.42974-44766.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.42974-44766.Ar_EST_120301b_c9323%7Caplysia.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12855%7Ccbwb.for.46476-47874.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.46476-47874.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.46476-47874.Ar_EST_120301b_c12855%7Ccbwb.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17067%7Csentrin-specific.for.47159-48553.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.47159-48553.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.47159-48553.Ar_EST_120301b_c17067%7Csentrin-specific.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5223%7Cimsp1_venph.for.56711-58040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.56711-58040.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.56711-58040.Ar_EST_120301b_rep_c5223%7Cimsp1_venph.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17363%7Cpredicted.for.57604-58980.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.57604-58980.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.57604-58980.Ar_EST_120301b_c17363%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15345%7Cats1.for.58530-59811.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.58530-59811.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.58530-59811.Ar_EST_120301b_c15345%7Cats1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15400%7Csa2-vi-b8.for.61106-62363.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.61106-62363.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.61106-62363.Ar_EST_120301b_c15400%7Csa2-vi-b8.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c653%7Ccytochrome.for.69192-71656.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.69192-71656.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.69192-71656.Ar_EST_120301b_c653%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6854%7Cmedium-chain.for.69883-71610.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.69883-71610.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.69883-71610.Ar_EST_120301b_rep_c6854%7Cmedium-chain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5386%7Crelated.for.69897-71031.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.69897-71031.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.69897-71031.Ar_EST_120301b_rep_c5386%7Crelated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2281%7Ckti12.for.71371-72941.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.71371-72941.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.71371-72941.Ar_EST_120301b_c2281%7Ckti12.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12014%7Cprotein.for.74568-76292.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.74568-76292.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.74568-76292.Ar_EST_120301b_c12014%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2496%7Cloc496076.for.75620-77212.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.75620-77212.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.75620-77212.Ar_EST_120301b_c2496%7Cloc496076.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13121%7Cubiquitin-conjugating.for.76567-77772.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.76567-77772.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.76567-77772.Ar_EST_120301b_c13121%7Cubiquitin-conjugating.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17049%7Cubiquitin-conjugating.for.76656-78111.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.76656-78111.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.76656-78111.Ar_EST_120301b_c17049%7Cubiquitin-conjugating.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15707%7Cubiquitin-conjugating.for.77963-79236.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.77963-79236.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.77963-79236.Ar_EST_120301b_c15707%7Cubiquitin-conjugating.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19531%7Ccytochrome.for.83617-84850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.83617-84850.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.83617-84850.Ar_EST_120301b_rep_c19531%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20458%7Cg5p_21469.for.82987-84183.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82987-84183.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82987-84183.Ar_EST_120301b_rep_c20458%7Cg5p_21469.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig525%7Ccytochrome.for.82529-84894.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82529-84894.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82529-84894.120301b_Contig525%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11444%7Ccytochrome.for.82958-84201.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82958-84201.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82958-84201.Ar_EST_120301b_rep_c11444%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20388%7Ccytochrome.for.82934-84490.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82934-84490.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82934-84490.Ar_EST_120301b_rep_c20388%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12324%7Cprobable.for.83655-84889.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.83655-84889.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.83655-84889.Ar_EST_120301b_rep_c12324%7Cprobable.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20161%7Csoluble.for.82773-83790.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82773-83790.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82773-83790.Ar_EST_120301b_rep_c20161%7Csoluble.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig757%7Cpredicted.for.84687-86383.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.84687-86383.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.84687-86383.120301b_Contig757%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig881%7Cariadne-like.for.85969-88271.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.85969-88271.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.85969-88271.120301b_Contig881%7Cariadne-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2491%7Cprotein.for.88092-90169.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.88092-90169.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.88092-90169.Ar_EST_120301b_c2491%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17100%7Csenescence-associated.for.90025-91440.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.90025-91440.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.90025-91440.Ar_EST_120301b_c17100%7Csenescence-associated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16583%7Ccolon.for.90585-91993.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.90585-91993.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.90585-91993.Ar_EST_120301b_c16583%7Ccolon.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15294%7Cpoly.for.91935-93211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.91935-93211.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.91935-93211.Ar_EST_120301b_c15294%7Cpoly.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig697%7Cankrd32.for.97243-98654.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.97243-98654.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.97243-98654.120301b_Contig697%7Cankrd32.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8635%7Cbrct.for.98441-100125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.98441-100125.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.98441-100125.Ar_EST_120301b_c8635%7Cbrct.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12958%7Cphosphoenolpyruvate.for.99382-100569.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99382-100569.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99382-100569.Ar_EST_120301b_rep_c12958%7Cphosphoenolpyruvate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7209%7Cphosphoenolpyruvate.for.99366-101327.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99366-101327.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99366-101327.Ar_EST_120301b_rep_c7209%7Cphosphoenolpyruvate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13873%7Cphosphoenolpyruvate.for.100295-101322.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.100295-101322.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.100295-101322.Ar_EST_120301b_rep_c13873%7Cphosphoenolpyruvate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4052%7Cphosphoenolpyruvate.for.99339-102017.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99339-102017.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99339-102017.Ar_EST_120301b_rep_c4052%7Cphosphoenolpyruvate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5671%7Cphosphoenolpyruvate.for.99792-101500.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99792-101500.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99792-101500.Ar_EST_120301b_rep_c5671%7Cphosphoenolpyruvate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4277%7Cphosphoenolpyruvate.for.100302-101725.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.100302-101725.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.100302-101725.Ar_EST_120301b_rep_c4277%7Cphosphoenolpyruvate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16128%7Ctranslation.for.101948-103355.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.101948-103355.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.101948-103355.Ar_EST_120301b_c16128%7Ctranslation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15868%7Ckn511.for.102976-104447.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.102976-104447.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.102976-104447.Ar_EST_120301b_c15868%7Ckn511.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7068%7C%28%2B%29-neomenthol.for.105801-107350.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.105801-107350.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.105801-107350.Ar_EST_120301b_rep_c7068%7C%28%2B%29-neomenthol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10200%7Cmetaxin.for.107922-109515.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.107922-109515.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.107922-109515.Ar_EST_120301b_c10200%7Cmetaxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17456%7Cactinin-like.for.114899-116189.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.114899-116189.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.114899-116189.Ar_EST_120301b_c17456%7Cactinin-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig155%7Cww.for.115764-117485.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.115764-117485.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.115764-117485.120301b_Contig155%7Cww.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c522%7Cprotein.for.116877-118241.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.116877-118241.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.116877-118241.Ar_EST_120301b_c522%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14850%7Ccayc.for.118074-119429.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.118074-119429.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.118074-119429.Ar_EST_120301b_c14850%7Ccayc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1195%7Chypothetical.for.119558-121154.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.119558-121154.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.119558-121154.Ar_EST_120301b_c1195%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c724%7Chypothetical.for.118804-120405.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.118804-120405.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.118804-120405.Ar_EST_120301b_c724%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13008%7Chypothetical.for.120208-121407.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.120208-121407.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.120208-121407.Ar_EST_120301b_c13008%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3587%7Cprotein.for.120897-123890.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.120897-123890.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.120897-123890.Ar_EST_120301b_c3587%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8766%7Cdenn.for.123949-125254.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.123949-125254.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.123949-125254.Ar_EST_120301b_rep_c8766%7Cdenn.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17570%7Cprotein.for.123430-124522.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.123430-124522.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.123430-124522.Ar_EST_120301b_rep_c17570%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18858%7Cdenn.for.123660-125168.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.123660-125168.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.123660-125168.Ar_EST_120301b_c18858%7Cdenn.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3052%7Ccullin.for.125843-127484.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.125843-127484.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.125843-127484.Ar_EST_120301b_c3052%7Ccullin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17614%7Ccopper.for.125607-126815.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.125607-126815.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.125607-126815.Ar_EST_120301b_c17614%7Ccopper.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c747%7Cprotein.for.124500-126576.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.124500-126576.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.124500-126576.Ar_EST_120301b_c747%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17078%7Cist_wi5_15381.for.130667-131913.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.130667-131913.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.130667-131913.Ar_EST_120301b_c17078%7Cist_wi5_15381.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17485%7Ccnb66-.for.138702-140015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.138702-140015.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.138702-140015.Ar_EST_120301b_c17485%7Ccnb66-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2216%7Cnormalized.for.138992-140015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.138992-140015.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.138992-140015.Ar_EST_120301b_c2216%7Cnormalized.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2246%7Ccbpn%3A.for.139223-140015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.139223-140015.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.139223-140015.Ar_EST_120301b_c2246%7Ccbpn%3A.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:54 now processing 0 total clusters:54 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:54 now processing 0 total clusters:54 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:52 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:59 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:52 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:72 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:57 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:71 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:35 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:53 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:47 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:41 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083046%7Cgb%7CEFC36754%2E1%7C.for.1-836.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.1-836.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.1-836.gi%7C284083046%7Cgb%7CEFC36754%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091607%7Cgb%7CEFC45253%2E1%7C.for.7653-8617.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.7653-8617.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.7653-8617.gi%7C284091607%7Cgb%7CEFC45253%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092028%7Cgb%7CEFC45672%2E1%7C.for.30151-33419.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.30151-33419.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.30151-33419.gi%7C284092028%7Cgb%7CEFC45672%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090471%7Cgb%7CEFC44123%2E1%7C.for.32804-34254.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.32804-34254.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.32804-34254.gi%7C284090471%7Cgb%7CEFC44123%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096685%7Cgb%7CEFC50312%2E1%7C.for.33998-37035.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.33998-37035.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.33998-37035.gi%7C284096685%7Cgb%7CEFC50312%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088045%7Cgb%7CEFC41711%2E1%7C.for.33818-37032.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.33818-37032.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.33818-37032.gi%7C284088045%7Cgb%7CEFC41711%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090230%7Cgb%7CEFC43883%2E1%7C.for.41294-42622.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41294-42622.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41294-42622.gi%7C284090230%7Cgb%7CEFC43883%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094055%7Cgb%7CEFC47690%2E1%7C.for.40922-43327.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40922-43327.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40922-43327.gi%7C284094055%7Cgb%7CEFC47690%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082128%7Cgb%7CEFC35900%2E1%7C.for.41339-42475.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41339-42475.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41339-42475.gi%7C284082128%7Cgb%7CEFC35900%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096572%7Cgb%7CEFC50200%2E1%7C.for.41336-42448.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41336-42448.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41336-42448.gi%7C284096572%7Cgb%7CEFC50200%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092196%7Cgb%7CEFC45839%2E1%7C.for.40940-42625.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40940-42625.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40940-42625.gi%7C284092196%7Cgb%7CEFC45839%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089069%7Cgb%7CEFC42729%2E1%7C.for.40934-42631.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40934-42631.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40934-42631.gi%7C284089069%7Cgb%7CEFC42729%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088445%7Cgb%7CEFC42108%2E1%7C.for.41318-42628.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41318-42628.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41318-42628.gi%7C284088445%7Cgb%7CEFC42108%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089047%7Cgb%7CEFC42707%2E1%7C.for.40934-42631.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40934-42631.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40934-42631.gi%7C284089047%7Cgb%7CEFC42707%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092545%7Cgb%7CEFC46187%2E1%7C.for.41303-42622.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41303-42622.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41303-42622.gi%7C284092545%7Cgb%7CEFC46187%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092133%7Cgb%7CEFC45776%2E1%7C.for.41336-42763.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41336-42763.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41336-42763.gi%7C284092133%7Cgb%7CEFC45776%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091257%7Cgb%7CEFC44905%2E1%7C.for.41279-42607.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41279-42607.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41279-42607.gi%7C284091257%7Cgb%7CEFC44905%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083391%7Cgb%7CEFC37095%2E1%7C.for.46019-47220.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.46019-47220.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.46019-47220.gi%7C284083391%7Cgb%7CEFC37095%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096907%7Cgb%7CEFC50534%2E1%7C.for.47156-48682.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.47156-48682.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.47156-48682.gi%7C284096907%7Cgb%7CEFC50534%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095965%7Cgb%7CEFC49594%2E1%7C.for.48536-51738.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.48536-51738.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.48536-51738.gi%7C284095965%7Cgb%7CEFC49594%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093119%7Cgb%7CEFC46758%2E1%7C.for.51320-53360.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.51320-53360.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.51320-53360.gi%7C284093119%7Cgb%7CEFC46758%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093777%7Cgb%7CEFC47413%2E1%7C.for.54524-55623.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.54524-55623.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.54524-55623.gi%7C284093777%7Cgb%7CEFC47413%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096265%7Cgb%7CEFC49893%2E1%7C.for.54593-55617.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.54593-55617.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.54593-55617.gi%7C284096265%7Cgb%7CEFC49893%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097069%7Cgb%7CEFC50696%2E1%7C.for.54270-57096.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.54270-57096.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.54270-57096.gi%7C284097069%7Cgb%7CEFC50696%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.67970-69036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67970-69036.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67970-69036.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.for.67964-69033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67964-69033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67964-69033.gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.for.68012-69093.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68012-69093.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68012-69093.gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.for.68009-69099.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68009-69099.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68009-69099.gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085992%7Cgb%7CEFC39672%2E1%7C.for.67967-69084.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67967-69084.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67967-69084.gi%7C284085992%7Cgb%7CEFC39672%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.for.67925-69084.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67925-69084.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67925-69084.gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094669%7Cgb%7CEFC48302%2E1%7C.for.67982-69240.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67982-69240.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67982-69240.gi%7C284094669%7Cgb%7CEFC48302%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095843%7Cgb%7CEFC49472%2E1%7C.for.68009-69078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68009-69078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68009-69078.gi%7C284095843%7Cgb%7CEFC49472%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.for.67991-69033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67991-69033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67991-69033.gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.for.67919-69033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67919-69033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67919-69033.gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090138%7Cgb%7CEFC43791%2E1%7C.for.67922-69105.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67922-69105.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67922-69105.gi%7C284090138%7Cgb%7CEFC43791%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.for.68009-69081.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68009-69081.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68009-69081.gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.for.68006-69042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68006-69042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68006-69042.gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.for.67970-69075.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67970-69075.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67970-69075.gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091293%7Cgb%7CEFC44940%2E1%7C.for.67988-69033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67988-69033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67988-69033.gi%7C284091293%7Cgb%7CEFC44940%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097003%7Cgb%7CEFC50630%2E1%7C.for.67994-69042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67994-69042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67994-69042.gi%7C284097003%7Cgb%7CEFC50630%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.for.68012-69039.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68012-69039.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68012-69039.gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083922%7Cgb%7CEFC37620%2E1%7C.for.67943-69015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67943-69015.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67943-69015.gi%7C284083922%7Cgb%7CEFC37620%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086956%7Cgb%7CEFC40629%2E1%7C.for.67598-69087.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67598-69087.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67598-69087.gi%7C284086956%7Cgb%7CEFC40629%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.for.67874-69132.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67874-69132.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67874-69132.gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090146%7Cgb%7CEFC43799%2E1%7C.for.67946-69078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67946-69078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67946-69078.gi%7C284090146%7Cgb%7CEFC43799%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.for.67928-69057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67928-69057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67928-69057.gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.for.67961-69042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67961-69042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67961-69042.gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.for.67856-69054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67856-69054.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67856-69054.gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082394%7Cgb%7CEFC36117%2E1%7C.for.67865-69255.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67865-69255.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67865-69255.gi%7C284082394%7Cgb%7CEFC36117%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090154%7Cgb%7CEFC43807%2E1%7C.for.67946-69105.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67946-69105.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67946-69105.gi%7C284090154%7Cgb%7CEFC43807%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086531%7Cgb%7CEFC40207%2E1%7C.for.67991-69165.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67991-69165.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67991-69165.gi%7C284086531%7Cgb%7CEFC40207%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081757%7Cgb%7CEFC35637%2E1%7C.for.68006-69000.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68006-69000.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68006-69000.gi%7C284081757%7Cgb%7CEFC35637%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.for.68012-68991.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68012-68991.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68012-68991.gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085724%7Cgb%7CEFC39406%2E1%7C.for.67847-69081.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67847-69081.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67847-69081.gi%7C284085724%7Cgb%7CEFC39406%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090243%7Cgb%7CEFC43896%2E1%7C.for.67895-69036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67895-69036.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67895-69036.gi%7C284090243%7Cgb%7CEFC43896%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090143%7Cgb%7CEFC43796%2E1%7C.for.67946-69078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67946-69078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67946-69078.gi%7C284090143%7Cgb%7CEFC43796%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.for.67889-69003.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67889-69003.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67889-69003.gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.for.67961-69060.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67961-69060.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67961-69060.gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083967%7Cgb%7CEFC37665%2E1%7C.for.67934-69036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67934-69036.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67934-69036.gi%7C284083967%7Cgb%7CEFC37665%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.for.68009-69033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68009-69033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68009-69033.gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087676%7Cgb%7CEFC41344%2E1%7C.for.67853-69180.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67853-69180.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67853-69180.gi%7C284087676%7Cgb%7CEFC41344%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.for.68033-69018.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68033-69018.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68033-69018.gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097074%7Cgb%7CEFC50701%2E1%7C.for.70651-71597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.70651-71597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.70651-71597.gi%7C284097074%7Cgb%7CEFC50701%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089534%7Cgb%7CEFC43191%2E1%7C.for.71334-73035.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.71334-73035.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.71334-73035.gi%7C284089534%7Cgb%7CEFC43191%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081900%7Cgb%7CEFC35731%2E1%7C.for.74620-75881.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.74620-75881.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.74620-75881.gi%7C284081900%7Cgb%7CEFC35731%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090744%7Cgb%7CEFC44394%2E1%7C.for.78118-79271.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.78118-79271.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.78118-79271.gi%7C284090744%7Cgb%7CEFC44394%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081997%7Cgb%7CEFC35800%2E1%7C.for.100561-101797.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.100561-101797.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.100561-101797.gi%7C284081997%7Cgb%7CEFC35800%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093069%7Cgb%7CEFC46708%2E1%7C.for.99379-101743.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99379-101743.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99379-101743.gi%7C284093069%7Cgb%7CEFC46708%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092634%7Cgb%7CEFC46275%2E1%7C.for.101489-103371.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.101489-103371.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.101489-103371.gi%7C284092634%7Cgb%7CEFC46275%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C313471368%7Csp%7CD2VAA9%2E1%7CMTNA_NAEGR.for.101489-103371.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.101489-103371.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.101489-103371.gi%7C313471368%7Csp%7CD2VAA9%2E1%7CMTNA_NAEGR.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084488%7Cgb%7CEFC38180%2E1%7C.for.121181-125102.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.121181-125102.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.121181-125102.gi%7C284084488%7Cgb%7CEFC38180%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093795%7Cgb%7CEFC47431%2E1%7C.for.124481-127583.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.124481-127583.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.124481-127583.gi%7C284093795%7Cgb%7CEFC47431%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093047%7Cgb%7CEFC46686%2E1%7C.for.124481-127362.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.124481-127362.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.124481-127362.gi%7C284093047%7Cgb%7CEFC46686%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:16 now processing 0 total clusters:16 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:16 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:16 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:16 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:13 now processing 0 total clusters:13 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:13 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:13 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:13 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:25 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:32 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.659-1586.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.659-1586.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.659-1586.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.7424-8549.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.7424-8549.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.7424-8549.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.27714-29394.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.27714-29394.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.27714-29394.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.33003-36835.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.33003-36835.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.33003-36835.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.38689-39942.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.38689-39942.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.38689-39942.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.40196-40985.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.40196-40985.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.40196-40985.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.41120-43127.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.41120-43127.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.41120-43127.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.46620-48482.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.46620-48482.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.46620-48482.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.48735-53160.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.48735-53160.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.48735-53160.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.54469-57843.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.54469-57843.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.54469-57843.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.82728-84694.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.82728-84694.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.82728-84694.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.88291-89969.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.88291-89969.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.88291-89969.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.90776-91798.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.90776-91798.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.90776-91798.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.103175-104273.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.103175-104273.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.103175-104273.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.106000-107152.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.106000-107152.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.106000-107152.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.115098-118041.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.115098-118041.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.115098-118041.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.118266-125063.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.118266-125063.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.118266-125063.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.5656-7004.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.5656-7004.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.5656-7004.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.8165-15319.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.8165-15319.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.8165-15319.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.15492-17482.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.15492-17482.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.15492-17482.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.20059-20981.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.20059-20981.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.20059-20981.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.27054-28008.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.27054-28008.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.27054-28008.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.30350-33219.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.30350-33219.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.30350-33219.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.42770-44566.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.42770-44566.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.42770-44566.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.57803-68899.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.57803-68899.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.57803-68899.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.69283-71456.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.69283-71456.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.69283-71456.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.71533-72835.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.71533-72835.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.71533-72835.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.74767-79071.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.74767-79071.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.74767-79071.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.84881-88071.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.84881-88071.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.84881-88071.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.92125-93011.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.92125-93011.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.92125-93011.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.97442-103171.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.97442-103171.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.97442-103171.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.124680-127383.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.124680-127383.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.124680-127383.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.130866-131713.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.130866-131713.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.130866-131713.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.138901-139874.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.138901-139874.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.138901-139874.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C29 Length: 126079 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C29.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C29.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:10 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:11 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:14 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:8 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:8 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8179%7Cnormalized.for.1097-2149.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.1097-2149.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.1097-2149.Ar_EST_120301b_rep_c8179%7Cnormalized.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7835%7Cfamily.for.3368-4459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.3368-4459.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.3368-4459.Ar_EST_120301b_c7835%7Cfamily.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c578%7Clow.for.4287-5641.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.4287-5641.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.4287-5641.Ar_EST_120301b_c578%7Clow.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17375%7C021030oocx024022ht.for.5051-6566.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.5051-6566.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.5051-6566.Ar_EST_120301b_c17375%7C021030oocx024022ht.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3629%7Cc2.for.7817-9651.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.7817-9651.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.7817-9651.Ar_EST_120301b_c3629%7Cc2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17542%7Calpha.for.8880-10271.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.8880-10271.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.8880-10271.Ar_EST_120301b_c17542%7Calpha.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4486%7Calpha-galactosidase.for.10166-11409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.10166-11409.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.10166-11409.Ar_EST_120301b_rep_c4486%7Calpha-galactosidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3978%7Calpha-galactosidase.for.10095-11343.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.10095-11343.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.10095-11343.Ar_EST_120301b_c3978%7Calpha-galactosidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig607%7Calpha-galactosidase.for.10102-12189.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.10102-12189.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.10102-12189.120301b_Contig607%7Calpha-galactosidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13874%7CDEHA2F26840p.for.10109-11040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.10109-11040.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.10109-11040.Ar_EST_120301b_rep_c13874%7CDEHA2F26840p.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4318%7Cactin-related.for.15717-17094.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.15717-17094.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.15717-17094.Ar_EST_120301b_rep_c4318%7Cactin-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2448%7Cprotein.for.18162-20068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.18162-20068.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.18162-20068.Ar_EST_120301b_c2448%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1643%7Cgr__ea.for.19898-21165.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.19898-21165.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.19898-21165.Ar_EST_120301b_c1643%7Cgr__ea.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4667%7Cpeptide.for.20507-21836.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.20507-21836.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.20507-21836.Ar_EST_120301b_rep_c4667%7Cpeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13946%7Cfm062691.for.23870-25166.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.23870-25166.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.23870-25166.Ar_EST_120301b_c13946%7Cfm062691.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c822%7Cadenylate.for.25563-26995.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.25563-26995.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.25563-26995.Ar_EST_120301b_c822%7Cadenylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15716%7Chypothetical.for.30116-31920.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.30116-31920.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.30116-31920.Ar_EST_120301b_c15716%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8109%7Cpredicted.for.33231-34533.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.33231-34533.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.33231-34533.Ar_EST_120301b_c8109%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3842%7Cmagnesium.for.34224-36102.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.34224-36102.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.34224-36102.Ar_EST_120301b_c3842%7Cmagnesium.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11375%7Cepsin.for.37842-39172.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.37842-39172.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.37842-39172.Ar_EST_120301b_c11375%7Cepsin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17650%7Ccre-myo-3.for.38846-40560.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.38846-40560.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.38846-40560.Ar_EST_120301b_c17650%7Ccre-myo-3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17315%7Cheat.for.39637-40968.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.39637-40968.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.39637-40968.Ar_EST_120301b_c17315%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18116%7C-like.for.42889-44275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.42889-44275.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.42889-44275.Ar_EST_120301b_c18116%7C-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig816%7Cwd.for.43860-45874.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.43860-45874.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.43860-45874.120301b_Contig816%7Cwd.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9517%7Ccfnw.for.45449-46761.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.45449-46761.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.45449-46761.Ar_EST_120301b_c9517%7Ccfnw.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13557%7Crhomboid.for.48933-50436.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.48933-50436.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.48933-50436.Ar_EST_120301b_c13557%7Crhomboid.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2074%7C39s.for.52467-53984.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.52467-53984.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.52467-53984.Ar_EST_120301b_c2074%7C39s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12950%7Cnad.for.52392-53486.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.52392-53486.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.52392-53486.Ar_EST_120301b_c12950%7Cnad.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2064%7Cdna.for.53309-55811.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.53309-55811.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.53309-55811.Ar_EST_120301b_c2064%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20272%7Cdna.for.55582-57416.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.55582-57416.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.55582-57416.Ar_EST_120301b_c20272%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8469%7Ccatalytic.for.55014-56440.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.55014-56440.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.55014-56440.Ar_EST_120301b_c8469%7Ccatalytic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14008%7Creplication.for.58157-59604.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.58157-59604.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.58157-59604.Ar_EST_120301b_c14008%7Creplication.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17948%7C2-oxoacid.for.68615-69892.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.68615-69892.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.68615-69892.Ar_EST_120301b_c17948%7C2-oxoacid.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17240%7Cfy373865.for.71171-72567.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.71171-72567.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.71171-72567.Ar_EST_120301b_c17240%7Cfy373865.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig278%7Cprotein.for.70529-73090.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.70529-73090.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.70529-73090.120301b_Contig278%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12757%7Cnormalized.for.73057-74393.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.73057-74393.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.73057-74393.Ar_EST_120301b_c12757%7Cnormalized.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19042%7Cmannan-binding.for.82056-83763.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.82056-83763.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.82056-83763.Ar_EST_120301b_c19042%7Cmannan-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7939%7Cmannan-binding.for.82082-83494.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.82082-83494.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.82082-83494.Ar_EST_120301b_c7939%7Cmannan-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19195%7Cpredicted.for.84202-85409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.84202-85409.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.84202-85409.Ar_EST_120301b_c19195%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9407%7Cpredicted.for.84534-85789.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.84534-85789.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.84534-85789.Ar_EST_120301b_c9407%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c975%7Cphospholipase.for.85526-86849.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.85526-86849.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.85526-86849.Ar_EST_120301b_c975%7Cphospholipase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18766%7Cprotein.for.86248-87871.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.86248-87871.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.86248-87871.Ar_EST_120301b_c18766%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8008%7Cest_omyk_evo_818589.for.86726-88045.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.86726-88045.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.86726-88045.Ar_EST_120301b_c8008%7Cest_omyk_evo_818589.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16106%7Cmm1-0024t-m079-a10-.for.87327-88533.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.87327-88533.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.87327-88533.Ar_EST_120301b_c16106%7Cmm1-0024t-m079-a10-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig780%7Cfy580029.for.88294-89812.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.88294-89812.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.88294-89812.120301b_Contig780%7Cfy580029.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3543%7Cdcn1-like.for.89436-91029.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.89436-91029.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.89436-91029.Ar_EST_120301b_c3543%7Cdcn1-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2727%7Cskp1-like.for.90317-92010.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.90317-92010.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.90317-92010.Ar_EST_120301b_c2727%7Cskp1-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13307%7Chypothetical.for.91504-92833.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.91504-92833.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.91504-92833.Ar_EST_120301b_c13307%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8761%7Cplant.for.92721-94535.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.92721-94535.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.92721-94535.Ar_EST_120301b_c8761%7Cplant.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18653%7Cvacuolar.for.94821-96247.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.94821-96247.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.94821-96247.Ar_EST_120301b_c18653%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7779%7Cribosomal.for.95438-97086.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.95438-97086.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.95438-97086.Ar_EST_120301b_c7779%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19859%7Cvam6.for.96081-98261.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.96081-98261.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.96081-98261.Ar_EST_120301b_c19859%7Cvam6.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19889%7Cam524334.for.94360-95913.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.94360-95913.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.94360-95913.Ar_EST_120301b_c19889%7Cam524334.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2947%7Coxoglutarate.for.102452-104208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.102452-104208.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.102452-104208.Ar_EST_120301b_c2947%7Coxoglutarate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3312%7Coxoglutarate.for.100584-102407.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.100584-102407.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.100584-102407.Ar_EST_120301b_c3312%7Coxoglutarate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8241%7Coxoglutarate.for.101538-103504.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.101538-103504.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.101538-103504.Ar_EST_120301b_c8241%7Coxoglutarate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c827%7Cxanthine.for.103424-104780.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.103424-104780.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.103424-104780.Ar_EST_120301b_c827%7Cxanthine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3666%7Cxanthine.for.103935-106710.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.103935-106710.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.103935-106710.Ar_EST_120301b_c3666%7Cxanthine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c76%7Cxanthine.for.106048-107728.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.106048-107728.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.106048-107728.Ar_EST_120301b_c76%7Cxanthine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13578%7Cxanthine.for.107198-108391.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.107198-108391.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.107198-108391.Ar_EST_120301b_c13578%7Cxanthine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15340%7C---NA---.for.108866-110095.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.108866-110095.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.108866-110095.Ar_EST_120301b_c15340%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14806%7Cubiquitin.for.112126-113439.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.112126-113439.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.112126-113439.Ar_EST_120301b_c14806%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10754%7Cfs549801.for.114432-115482.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.114432-115482.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.114432-115482.Ar_EST_120301b_c10754%7Cfs549801.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2885%7Catp-dependent.for.114881-116819.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.114881-116819.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.114881-116819.Ar_EST_120301b_c2885%7Catp-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16854%7Ccns.for.115963-117321.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.115963-117321.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.115963-117321.Ar_EST_120301b_c16854%7Ccns.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1234%7Cextracellular.for.116926-119073.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.116926-119073.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.116926-119073.Ar_EST_120301b_c1234%7Cextracellular.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18156%7Cest_bsai_evw_1261795.for.118556-119843.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.118556-119843.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.118556-119843.Ar_EST_120301b_c18156%7Cest_bsai_evw_1261795.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16679%7C---NA---.for.119682-120970.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.119682-120970.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.119682-120970.Ar_EST_120301b_c16679%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15340%7C---NA---.for.121298-122521.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.121298-122521.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.121298-122521.Ar_EST_120301b_c15340%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7264%7Celongation.for.122454-123795.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122454-123795.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122454-123795.Ar_EST_120301b_rep_c7264%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7231%7Ctranslation.for.122649-123799.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122649-123799.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122649-123799.Ar_EST_120301b_rep_c7231%7Ctranslation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19680%7Celongation.for.122972-124120.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122972-124120.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122972-124120.Ar_EST_120301b_rep_c19680%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5056%7Celongation.for.123236-124322.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123236-124322.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123236-124322.Ar_EST_120301b_rep_c5056%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20204%7Celongation.for.123352-124343.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123352-124343.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123352-124343.Ar_EST_120301b_rep_c20204%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4033%7Celongation.for.122354-124484.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122354-124484.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122354-124484.Ar_EST_120301b_rep_c4033%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig612%7Celongation.for.123121-124432.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123121-124432.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123121-124432.120301b_Contig612%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7205%7Ctranslation.for.122978-124036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122978-124036.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122978-124036.Ar_EST_120301b_rep_c7205%7Ctranslation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15762%7Celongation.for.123409-124481.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123409-124481.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123409-124481.Ar_EST_120301b_rep_c15762%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig613%7Celongation.for.122770-124010.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122770-124010.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122770-124010.120301b_Contig613%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18610%7Celongation.for.123405-124479.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123405-124479.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123405-124479.Ar_EST_120301b_rep_c18610%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5963%7Celongation.for.122376-123486.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122376-123486.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122376-123486.Ar_EST_120301b_rep_c5963%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20041%7Celongation.for.122393-123437.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122393-123437.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122393-123437.Ar_EST_120301b_rep_c20041%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5394%7Celongation.for.122479-123583.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122479-123583.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122479-123583.Ar_EST_120301b_rep_c5394%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8943%7Celongation.for.123127-124102.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123127-124102.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123127-124102.Ar_EST_120301b_c8943%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7169%7Celongation.for.123192-124250.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123192-124250.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123192-124250.Ar_EST_120301b_rep_c7169%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5382%7Celongation.for.123276-124266.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123276-124266.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123276-124266.Ar_EST_120301b_rep_c5382%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4827%7Celongation.for.122343-123988.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122343-123988.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122343-123988.Ar_EST_120301b_rep_c4827%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16096%7Celongation.for.122363-123545.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122363-123545.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122363-123545.Ar_EST_120301b_rep_c16096%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7219%7Ctranslation.for.122603-123858.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122603-123858.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122603-123858.Ar_EST_120301b_rep_c7219%7Ctranslation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7236%7Celongation.for.122883-124068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122883-124068.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122883-124068.Ar_EST_120301b_rep_c7236%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19915%7Celongation.for.123442-124484.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123442-124484.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123442-124484.Ar_EST_120301b_rep_c19915%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5477%7Celongation.for.122462-123491.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122462-123491.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122462-123491.Ar_EST_120301b_rep_c5477%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19970%7Celongation.for.123399-124493.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123399-124493.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123399-124493.Ar_EST_120301b_rep_c19970%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7042%7Ctranslation.for.122885-124003.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122885-124003.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122885-124003.Ar_EST_120301b_rep_c7042%7Ctranslation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6990%7Celongation.for.122895-124193.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122895-124193.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122895-124193.Ar_EST_120301b_rep_c6990%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7719%7Celongation.for.123277-124464.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123277-124464.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123277-124464.Ar_EST_120301b_rep_c7719%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5354%7Celongation.for.123442-124478.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123442-124478.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123442-124478.Ar_EST_120301b_rep_c5354%7Celongation.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:51 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:51 now processing 0 total clusters:51 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:51 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 ...processing 0 of 10 ...processing 1 of 10 ...processing 2 of 10 ...processing 3 of 10 ...processing 4 of 10 ...processing 5 of 10 ...processing 6 of 10 ...processing 7 of 10 ...processing 8 of 10 ...processing 9 of 10 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:37 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:30 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:35 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:43 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:33 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:29 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:31 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:35 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:24 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094796%7Cgb%7CEFC48429%2E1%7C.for.15642-17017.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.15642-17017.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.15642-17017.gi%7C284094796%7Cgb%7CEFC48429%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082488%7Cgb%7CEFC36205%2E1%7C.for.16488-18115.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.16488-18115.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.16488-18115.gi%7C284082488%7Cgb%7CEFC36205%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087289%7Cgb%7CEFC40960%2E1%7C.for.17992-20585.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.17992-20585.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.17992-20585.gi%7C284087289%7Cgb%7CEFC40960%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095823%7Cgb%7CEFC49452%2E1%7C.for.20546-21798.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.20546-21798.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.20546-21798.gi%7C284095823%7Cgb%7CEFC49452%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083472%7Cgb%7CEFC37175%2E1%7C.for.23710-24791.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.23710-24791.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.23710-24791.gi%7C284083472%7Cgb%7CEFC37175%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093407%7Cgb%7CEFC47045%2E1%7C.for.33790-35729.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.33790-35729.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.33790-35729.gi%7C284093407%7Cgb%7CEFC47045%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088682%7Cgb%7CEFC42344%2E1%7C.for.43774-45818.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.43774-45818.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.43774-45818.gi%7C284088682%7Cgb%7CEFC42344%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090843%7Cgb%7CEFC44493%2E1%7C.for.51653-52746.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.51653-52746.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.51653-52746.gi%7C284090843%7Cgb%7CEFC44493%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085714%7Cgb%7CEFC39396%2E1%7C.for.52255-54015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.52255-54015.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.52255-54015.gi%7C284085714%7Cgb%7CEFC39396%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089155%7Cgb%7CEFC42814%2E1%7C.for.53275-57104.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.53275-57104.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.53275-57104.gi%7C284089155%7Cgb%7CEFC42814%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086989%7Cgb%7CEFC40662%2E1%7C.for.58507-59883.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.58507-59883.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.58507-59883.gi%7C284086989%7Cgb%7CEFC40662%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096971%7Cgb%7CEFC50598%2E1%7C.for.57951-59898.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.57951-59898.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.57951-59898.gi%7C284096971%7Cgb%7CEFC50598%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092099%7Cgb%7CEFC45742%2E1%7C.for.60927-63829.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.60927-63829.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.60927-63829.gi%7C284092099%7Cgb%7CEFC45742%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088599%7Cgb%7CEFC42262%2E1%7C.for.67523-68880.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.67523-68880.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.67523-68880.gi%7C284088599%7Cgb%7CEFC42262%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087974%7Cgb%7CEFC41640%2E1%7C.for.89522-91023.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.89522-91023.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.89522-91023.gi%7C284087974%7Cgb%7CEFC41640%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094695%7Cgb%7CEFC48328%2E1%7C.for.101040-104240.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.101040-104240.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.101040-104240.gi%7C284094695%7Cgb%7CEFC48328%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087414%7Cgb%7CEFC41084%2E1%7C.for.100661-104243.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.100661-104243.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.100661-104243.gi%7C284087414%7Cgb%7CEFC41084%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080893%7Cgb%7CEFC35223%2E1%7C.for.103783-105176.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.103783-105176.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.103783-105176.gi%7C284080893%7Cgb%7CEFC35223%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095600%7Cgb%7CEFC49230%2E1%7C.for.103573-108452.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.103573-108452.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.103573-108452.gi%7C284095600%7Cgb%7CEFC49230%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089171%7Cgb%7CEFC42830%2E1%7C.for.107194-108455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.107194-108455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.107194-108455.gi%7C284089171%7Cgb%7CEFC42830%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081083%7Cgb%7CEFC35289%2E1%7C.for.104227-105854.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.104227-105854.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.104227-105854.gi%7C284081083%7Cgb%7CEFC35289%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082443%7Cgb%7CEFC36161%2E1%7C.for.117710-118968.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.117710-118968.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.117710-118968.gi%7C284082443%7Cgb%7CEFC36161%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090531%7Cgb%7CEFC44182%2E1%7C.for.122379-124477.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122379-124477.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122379-124477.gi%7C284090531%7Cgb%7CEFC44182%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096603%7Cgb%7CEFC50231%2E1%7C.for.122379-124477.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122379-124477.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122379-124477.gi%7C284096603%7Cgb%7CEFC50231%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084223%7Cgb%7CEFC37918%2E1%7C.for.122379-124477.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122379-124477.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122379-124477.gi%7C284084223%7Cgb%7CEFC37918%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C84105357%7Cgb%7CABC54650%2E1%7C.for.122424-124411.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122424-124411.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122424-124411.gi%7C84105357%7Cgb%7CABC54650%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:15 now processing 0 total clusters:15 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:28 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:28 now processing 0 total clusters:28 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:28 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 2 ...processing 1 of 2 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 10 ...processing 1 of 10 ...processing 2 of 10 ...processing 3 of 10 ...processing 4 of 10 ...processing 5 of 10 ...processing 6 of 10 ...processing 7 of 10 ...processing 8 of 10 ...processing 9 of 10 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.1215-2144.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.1215-2144.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.1215-2144.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.4486-6372.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.4486-6372.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.4486-6372.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.7893-9451.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.7893-9451.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.7893-9451.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.10244-11989.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.10244-11989.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.10244-11989.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.20696-21639.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.20696-21639.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.20696-21639.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.24069-24966.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.24069-24966.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.24069-24966.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.33430-34333.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.33430-34333.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.33430-34333.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.38041-40366.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.38041-40366.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.38041-40366.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.43973-46561.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.43973-46561.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.43973-46561.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.52454-53815.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.52454-53815.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.52454-53815.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.70728-74193.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.70728-74193.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.70728-74193.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.82281-83294.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.82281-83294.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.82281-83294.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.84401-85589.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.84401-85589.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.84401-85589.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.85725-88333.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.85725-88333.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.85725-88333.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.88493-89612.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.88493-89612.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.88493-89612.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.89634-90829.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.89634-90829.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.89634-90829.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.94500-98061.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.94500-98061.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.94500-98061.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.100857-104580.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.100857-104580.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.100857-104580.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.109065-109895.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.109065-109895.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.109065-109895.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.112325-113239.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.112325-113239.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.112325-113239.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.121491-122321.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.121491-122321.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.121491-122321.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.9079-10071.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.9079-10071.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.9079-10071.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.15841-17915.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.15841-17915.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.15841-17915.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.18361-19868.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.18361-19868.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.18361-19868.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.20097-20965.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.20097-20965.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.20097-20965.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.25760-26795.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.25760-26795.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.25760-26795.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.33989-35902.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.33989-35902.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.33989-35902.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.43088-44075.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.43088-44075.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.43088-44075.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.49132-50236.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.49132-50236.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.49132-50236.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.51852-52546.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.51852-52546.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.51852-52546.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.53474-57216.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.53474-57216.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.53474-57216.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.58150-59698.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.58150-59698.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.58150-59698.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.61126-63629.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.61126-63629.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.61126-63629.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.90516-92633.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.90516-92633.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.90516-92633.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.92920-94335.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.92920-94335.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.92920-94335.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.103772-108252.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.103772-108252.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.103772-108252.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.116162-117121.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.116162-117121.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.116162-117121.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.117125-119712.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.117125-119712.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.117125-119712.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.119872-120770.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.119872-120770.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.119872-120770.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.122543-124287.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.122543-124287.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.122543-124287.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C30 Length: 54314 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:2 current j:0 j_size:2 current j:1 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C30.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C30.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig893%7Catp-binding.for.466-2557.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.466-2557.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.466-2557.120301b_Contig893%7Catp-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10773%7Cabc.for.1870-3393.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1870-3393.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1870-3393.Ar_EST_120301b_c10773%7Cabc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4126%7Chypothetical.for.2863-4751.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.2863-4751.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.2863-4751.Ar_EST_120301b_rep_c4126%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6273%7Cprotein.for.3309-4727.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.3309-4727.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.3309-4727.Ar_EST_120301b_rep_c6273%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15582%7C---NA---.for.3691-4637.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.3691-4637.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.3691-4637.Ar_EST_120301b_rep_c15582%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12926%7Ccchx.for.7094-8380.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.7094-8380.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.7094-8380.Ar_EST_120301b_c12926%7Ccchx.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17763%7Cdna.for.8313-9673.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.8313-9673.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.8313-9673.Ar_EST_120301b_c17763%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4571%7Cspry.for.12651-15061.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.12651-15061.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.12651-15061.Ar_EST_120301b_rep_c4571%7Cspry.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4942%7Cspry.for.12752-14477.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.12752-14477.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.12752-14477.Ar_EST_120301b_rep_c4942%7Cspry.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19099%7Cnabrp89tf.for.15014-16243.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.15014-16243.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.15014-16243.Ar_EST_120301b_rep_c19099%7Cnabrp89tf.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6660%7Cbasal.for.30092-32127.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.30092-32127.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.30092-32127.Ar_EST_120301b_rep_c6660%7Cbasal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18311%7Cnuclear.for.32038-33497.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.32038-33497.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.32038-33497.Ar_EST_120301b_c18311%7Cnuclear.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16390%7Catp-dependent.for.32819-34056.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.32819-34056.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.32819-34056.Ar_EST_120301b_c16390%7Catp-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11194%7Cpredicted.for.38415-39629.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.38415-39629.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.38415-39629.Ar_EST_120301b_c11194%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig234%7Chypothetical.for.39994-41974.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.39994-41974.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.39994-41974.120301b_Contig234%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10235%7Cprotein.for.39033-40812.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.39033-40812.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.39033-40812.Ar_EST_120301b_c10235%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2809%7Cprotein.for.42500-43683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.42500-43683.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.42500-43683.Ar_EST_120301b_c2809%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8390%7Clarv027tr.for.41927-43429.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.41927-43429.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.41927-43429.Ar_EST_120301b_c8390%7Clarv027tr.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3793%7Ctpr.for.43881-45649.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.43881-45649.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.43881-45649.Ar_EST_120301b_c3793%7Ctpr.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10560%7C015b07_011507c.for.45034-46189.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.45034-46189.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.45034-46189.Ar_EST_120301b_c10560%7C015b07_011507c.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6594%7Ceukaryotic.for.46490-48119.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.46490-48119.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.46490-48119.Ar_EST_120301b_rep_c6594%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12692%7Cdna-binding.for.47435-48595.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.47435-48595.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.47435-48595.Ar_EST_120301b_c12692%7Cdna-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3672%7Ccold.for.47988-49845.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.47988-49845.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.47988-49845.Ar_EST_120301b_c3672%7Ccold.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:17 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:19 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:17 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:16 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:14 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:19 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:13 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:14 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:14 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:17 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082638%7Cgb%7CEFC36352%2E1%7C.for.1529-3354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3354.gi%7C284082638%7Cgb%7CEFC36352%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089041%7Cgb%7CEFC42701%2E1%7C.for.742-3363.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.742-3363.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.742-3363.gi%7C284089041%7Cgb%7CEFC42701%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096503%7Cgb%7CEFC50131%2E1%7C.for.1526-3375.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1526-3375.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1526-3375.gi%7C284096503%7Cgb%7CEFC50131%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086918%7Cgb%7CEFC40591%2E1%7C.for.1529-3375.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3375.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3375.gi%7C284086918%7Cgb%7CEFC40591%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091223%7Cgb%7CEFC44871%2E1%7C.for.1529-3369.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3369.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3369.gi%7C284091223%7Cgb%7CEFC44871%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096824%7Cgb%7CEFC50451%2E1%7C.for.1784-3351.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1784-3351.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1784-3351.gi%7C284096824%7Cgb%7CEFC50451%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086695%7Cgb%7CEFC40370%2E1%7C.for.2225-3375.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.2225-3375.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.2225-3375.gi%7C284086695%7Cgb%7CEFC40370%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093963%7Cgb%7CEFC47599%2E1%7C.for.1535-3354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1535-3354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1535-3354.gi%7C284093963%7Cgb%7CEFC47599%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089381%7Cgb%7CEFC43039%2E1%7C.for.1529-3369.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3369.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3369.gi%7C284089381%7Cgb%7CEFC43039%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086532%7Cgb%7CEFC40208%2E1%7C.for.1598-3348.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1598-3348.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1598-3348.gi%7C284086532%7Cgb%7CEFC40208%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092043%7Cgb%7CEFC45687%2E1%7C.for.1529-3354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3354.gi%7C284092043%7Cgb%7CEFC45687%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085363%7Cgb%7CEFC39047%2E1%7C.for.1529-3354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3354.gi%7C284085363%7Cgb%7CEFC39047%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083990%7Cgb%7CEFC37687%2E1%7C.for.1520-3351.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1520-3351.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1520-3351.gi%7C284083990%7Cgb%7CEFC37687%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083848%7Cgb%7CEFC37547%2E1%7C.for.1535-3351.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1535-3351.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1535-3351.gi%7C284083848%7Cgb%7CEFC37547%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086873%7Cgb%7CEFC40547%2E1%7C.for.1625-3363.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1625-3363.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1625-3363.gi%7C284086873%7Cgb%7CEFC40547%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083434%7Cgb%7CEFC37137%2E1%7C.for.1535-3354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1535-3354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1535-3354.gi%7C284083434%7Cgb%7CEFC37137%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094052%7Cgb%7CEFC47687%2E1%7C.for.1547-3354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1547-3354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1547-3354.gi%7C284094052%7Cgb%7CEFC47687%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085442%7Cgb%7CEFC39126%2E1%7C.for.1529-3354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3354.gi%7C284085442%7Cgb%7CEFC39126%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092675%7Cgb%7CEFC46316%2E1%7C.for.1535-3369.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1535-3369.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1535-3369.gi%7C284092675%7Cgb%7CEFC46316%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083453%7Cgb%7CEFC37156%2E1%7C.for.1523-3363.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1523-3363.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1523-3363.gi%7C284083453%7Cgb%7CEFC37156%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085964%7Cgb%7CEFC39644%2E1%7C.for.1823-3354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1823-3354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1823-3354.gi%7C284085964%7Cgb%7CEFC39644%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096783%7Cgb%7CEFC50410%2E1%7C.for.11072-13224.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.11072-13224.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.11072-13224.gi%7C284096783%7Cgb%7CEFC50410%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084703%7Cgb%7CEFC38393%2E1%7C.for.24850-25808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.24850-25808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.24850-25808.gi%7C284084703%7Cgb%7CEFC38393%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088237%7Cgb%7CEFC41902%2E1%7C.for.37067-38139.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.37067-38139.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.37067-38139.gi%7C284088237%7Cgb%7CEFC41902%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088261%7Cgb%7CEFC41926%2E1%7C.for.36988-38142.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.36988-38142.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.36988-38142.gi%7C284088261%7Cgb%7CEFC41926%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085648%7Cgb%7CEFC39330%2E1%7C.for.39406-40370.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.39406-40370.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.39406-40370.gi%7C284085648%7Cgb%7CEFC39330%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:2 now processing 0 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:2 now processing 0 in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:2 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:2 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:11 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.941-4551.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.941-4551.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.941-4551.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.7293-8180.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.7293-8180.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.7293-8180.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.8512-9473.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.8512-9473.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.8512-9473.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.11271-13024.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.11271-13024.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.11271-13024.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.30291-31960.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.30291-31960.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.30291-31960.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.32237-33865.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.32237-33865.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.32237-33865.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.39232-41792.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.39232-41792.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.39232-41792.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.42126-43343.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.42126-43343.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.42126-43343.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.3881-4437.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.3881-4437.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.3881-4437.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.12850-14861.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.12850-14861.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.12850-14861.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.15213-16051.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.15213-16051.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.15213-16051.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.44080-45989.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.44080-45989.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.44080-45989.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.46689-48014.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.46689-48014.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.46689-48014.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.48187-49645.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.48187-49645.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.48187-49645.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C33 Length: 138103 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C33.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C33.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:4 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10865%7Cn-terminal.for.2033-3700.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.2033-3700.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.2033-3700.Ar_EST_120301b_c10865%7Cn-terminal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8426%7Cinositol.for.9692-11354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.9692-11354.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.9692-11354.Ar_EST_120301b_c8426%7Cinositol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3091%7Cadipose-regulatory.for.13714-15674.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.13714-15674.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.13714-15674.Ar_EST_120301b_c3091%7Cadipose-regulatory.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14794%7Cfs962201.for.15139-16417.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.15139-16417.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.15139-16417.Ar_EST_120301b_c14794%7Cfs962201.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13215%7Cankyrin.for.15913-17182.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.15913-17182.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.15913-17182.Ar_EST_120301b_c13215%7Cankyrin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13475%7Ctransformer-sr.for.16806-18266.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.16806-18266.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.16806-18266.Ar_EST_120301b_rep_c13475%7Ctransformer-sr.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19625%7Cgtp-binding.for.18288-19294.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.18288-19294.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.18288-19294.Ar_EST_120301b_rep_c19625%7Cgtp-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c57%7Cdevelopmentally.for.17581-19507.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.17581-19507.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.17581-19507.Ar_EST_120301b_c57%7Cdevelopmentally.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9143%7Ccatf.for.20396-21844.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.20396-21844.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.20396-21844.Ar_EST_120301b_rep_c9143%7Ccatf.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18330%7Ccafy.for.21621-22865.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.21621-22865.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.21621-22865.Ar_EST_120301b_c18330%7Ccafy.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig221%7Cfp601087.for.22358-24862.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.22358-24862.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.22358-24862.120301b_Contig221%7Cfp601087.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c250%7Cv-myb.for.26371-29070.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.26371-29070.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.26371-29070.Ar_EST_120301b_c250%7Cv-myb.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2206%7C280438371.for.27937-29275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.27937-29275.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.27937-29275.Ar_EST_120301b_c2206%7C280438371.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17101%7Cche.for.28883-30363.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.28883-30363.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.28883-30363.Ar_EST_120301b_c17101%7Cche.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12076%7C---NA---.for.28960-30054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.28960-30054.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.28960-30054.Ar_EST_120301b_c12076%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5943%7Csyntaxin-binding.for.30851-32397.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.30851-32397.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.30851-32397.Ar_EST_120301b_rep_c5943%7Csyntaxin-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4805%7Csyntaxin.for.29991-32900.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.29991-32900.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.29991-32900.Ar_EST_120301b_rep_c4805%7Csyntaxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9158%7Csec1-like.for.31452-32914.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.31452-32914.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.31452-32914.Ar_EST_120301b_c9158%7Csec1-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16864%7Csyntaxin.for.31408-32511.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.31408-32511.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.31408-32511.Ar_EST_120301b_rep_c16864%7Csyntaxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16176%7Csyntaxin.for.30212-31558.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.30212-31558.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.30212-31558.Ar_EST_120301b_rep_c16176%7Csyntaxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9532%7Cconserved.for.32392-33871.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.32392-33871.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.32392-33871.Ar_EST_120301b_c9532%7Cconserved.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig434%7Ccell.for.35440-36926.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.35440-36926.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.35440-36926.120301b_Contig434%7Ccell.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17121%7Cgpi.for.37557-39027.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.37557-39027.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.37557-39027.Ar_EST_120301b_c17121%7Cgpi.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1164%7Cbst1_canga.for.38294-40130.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.38294-40130.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.38294-40130.120301b_Contig1164%7Cbst1_canga.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12556%7Col2821f.for.40012-41356.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.40012-41356.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.40012-41356.Ar_EST_120301b_c12556%7Col2821f.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13810%7Cexosome.for.40762-41850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.40762-41850.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.40762-41850.Ar_EST_120301b_c13810%7Cexosome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20565%7Cexosome.for.40975-42051.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.40975-42051.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.40975-42051.Ar_EST_120301b_rep_c20565%7Cexosome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1304%7Cexosome.for.42981-44309.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.42981-44309.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.42981-44309.Ar_EST_120301b_c1304%7Cexosome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20442%7Cexosome.for.43169-44389.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.43169-44389.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.43169-44389.Ar_EST_120301b_c20442%7Cexosome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9428%7Cunconventional.for.45256-46575.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.45256-46575.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.45256-46575.Ar_EST_120301b_c9428%7Cunconventional.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10763%7Cprotein.for.46158-47562.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.46158-47562.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.46158-47562.Ar_EST_120301b_c10763%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8600%7Cprotein.for.47002-48304.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.47002-48304.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.47002-48304.Ar_EST_120301b_c8600%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11770%7Cribonucleoside.for.49566-51011.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.49566-51011.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.49566-51011.Ar_EST_120301b_c11770%7Cribonucleoside.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19499%7Cribonucleoside.for.48600-50066.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.48600-50066.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.48600-50066.Ar_EST_120301b_c19499%7Cribonucleoside.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8020%7Cribonucleoside-triphosphate.for.48907-50444.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.48907-50444.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.48907-50444.Ar_EST_120301b_c8020%7Cribonucleoside-triphosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20281%7Ccation-transporting.for.52923-55212.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.52923-55212.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.52923-55212.Ar_EST_120301b_c20281%7Ccation-transporting.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17555%7Ccation-transporting.for.52392-53740.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.52392-53740.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.52392-53740.Ar_EST_120301b_c17555%7Ccation-transporting.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10588%7Cprobable.for.54509-55821.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.54509-55821.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.54509-55821.Ar_EST_120301b_c10588%7Cprobable.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3266%7Cglycosyltransferase.for.59493-61361.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.59493-61361.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.59493-61361.Ar_EST_120301b_c3266%7Cglycosyltransferase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14384%7Cprotein.for.61027-62292.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.61027-62292.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.61027-62292.Ar_EST_120301b_c14384%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14706%7Capoptosis.for.61337-62285.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.61337-62285.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.61337-62285.Ar_EST_120301b_c14706%7Capoptosis.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4234%7Chypothetical.for.63085-65145.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.63085-65145.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.63085-65145.Ar_EST_120301b_rep_c4234%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6835%7Cleishmanolysin-like.for.63703-64777.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.63703-64777.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.63703-64777.Ar_EST_120301b_rep_c6835%7Cleishmanolysin-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17669%7Chypothetical.for.63308-64533.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.63308-64533.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.63308-64533.Ar_EST_120301b_rep_c17669%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6093%7C---NA---.for.64020-65144.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.64020-65144.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.64020-65144.Ar_EST_120301b_rep_c6093%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11320%7Cpentatricopeptide.for.65970-67270.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.65970-67270.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.65970-67270.Ar_EST_120301b_c11320%7Cpentatricopeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c681%7Chypothetical.for.72906-74211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.72906-74211.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.72906-74211.Ar_EST_120301b_c681%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12804%7Ctype.for.75141-76563.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.75141-76563.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.75141-76563.Ar_EST_120301b_c12804%7Ctype.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6513%7Cmalate.for.80519-82412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.80519-82412.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.80519-82412.Ar_EST_120301b_rep_c6513%7Cmalate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6815%7Cmalate.for.80492-82211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.80492-82211.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.80492-82211.Ar_EST_120301b_rep_c6815%7Cmalate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3066%7Cmalate.for.79932-81736.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.79932-81736.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.79932-81736.Ar_EST_120301b_c3066%7Cmalate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16333%7Ctransport.for.82370-83712.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.82370-83712.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.82370-83712.Ar_EST_120301b_c16333%7Ctransport.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10746%7Cbeige.for.85163-86860.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.85163-86860.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.85163-86860.Ar_EST_120301b_c10746%7Cbeige.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14032%7Ccaxx.for.86480-87826.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.86480-87826.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.86480-87826.Ar_EST_120301b_c14032%7Ccaxx.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12871%7Cpredicted.for.88548-89839.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.88548-89839.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.88548-89839.Ar_EST_120301b_c12871%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15711%7Cbeach.for.89286-90628.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.89286-90628.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.89286-90628.Ar_EST_120301b_c15711%7Cbeach.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13277%7Cpredicted.for.90419-92191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.90419-92191.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.90419-92191.Ar_EST_120301b_c13277%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15589%7Cprotein.for.102548-103609.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.102548-103609.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.102548-103609.Ar_EST_120301b_c15589%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16197%7Cprotein.for.102885-104227.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.102885-104227.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.102885-104227.Ar_EST_120301b_c16197%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c22%7Caminotransferase.for.108878-111199.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.108878-111199.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.108878-111199.Ar_EST_120301b_c22%7Caminotransferase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15277%7Cprotein.for.110958-112022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.110958-112022.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.110958-112022.Ar_EST_120301b_c15277%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5938%7Carginine.for.112004-113875.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.112004-113875.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.112004-113875.Ar_EST_120301b_rep_c5938%7Carginine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12333%7Cfy828944.for.115780-117116.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115780-117116.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115780-117116.Ar_EST_120301b_c12333%7Cfy828944.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14482%7Cprotein.for.116951-118425.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.116951-118425.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.116951-118425.Ar_EST_120301b_c14482%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1997%7Cimpact.for.116977-118066.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.116977-118066.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.116977-118066.Ar_EST_120301b_c1997%7Cimpact.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20372%7C60s.for.118493-119653.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.118493-119653.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.118493-119653.Ar_EST_120301b_rep_c20372%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20437%7C60s.for.118509-119655.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.118509-119655.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.118509-119655.Ar_EST_120301b_rep_c20437%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18561%7C60s.for.118493-119665.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.118493-119665.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.118493-119665.Ar_EST_120301b_rep_c18561%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1306%7Cbay.for.119271-120567.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.119271-120567.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.119271-120567.Ar_EST_120301b_c1306%7Cbay.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11551%7Catp-binding.for.122951-124177.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.122951-124177.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.122951-124177.Ar_EST_120301b_c11551%7Catp-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2796%7Catp-binding.for.122280-123842.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.122280-123842.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.122280-123842.Ar_EST_120301b_c2796%7Catp-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig377%7Csenescence.for.121284-123104.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.121284-123104.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.121284-123104.120301b_Contig377%7Csenescence.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2715%7Catp-binding.for.123362-125173.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.123362-125173.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.123362-125173.Ar_EST_120301b_c2715%7Catp-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15601%7C3-beta.for.124944-126129.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.124944-126129.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.124944-126129.Ar_EST_120301b_c15601%7C3-beta.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1184%7C3-beta.for.125166-126821.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.125166-126821.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.125166-126821.Ar_EST_120301b_c1184%7C3-beta.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1082%7Csyntaxin.for.126182-127650.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.126182-127650.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.126182-127650.120301b_Contig1082%7Csyntaxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14083%7Chypothetical.for.130889-132167.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.130889-132167.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.130889-132167.Ar_EST_120301b_c14083%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2116%7Chat.for.130681-132010.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.130681-132010.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.130681-132010.Ar_EST_120301b_c2116%7Chat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12752%7Cbg01.for.134379-135767.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.134379-135767.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.134379-135767.Ar_EST_120301b_c12752%7Cbg01.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1133%7Cbg04-.for.136477-137733.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.136477-137733.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.136477-137733.Ar_EST_120301b_c1133%7Cbg04-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3822%7Cpiggybac.for.136920-138103.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.136920-138103.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.136920-138103.Ar_EST_120301b_c3822%7Cpiggybac.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c422%7Cmeloidogyne.for.135457-137120.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.135457-137120.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.135457-137120.Ar_EST_120301b_c422%7Cmeloidogyne.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19525%7Caj677057.for.136522-137693.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.136522-137693.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.136522-137693.Ar_EST_120301b_c19525%7Caj677057.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3325%7Cmeloidogyne.for.135463-137087.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.135463-137087.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.135463-137087.Ar_EST_120301b_c3325%7Cmeloidogyne.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8009%7Cbg04-.for.136027-137733.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.136027-137733.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.136027-137733.Ar_EST_120301b_c8009%7Cbg04-.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:55 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:55 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:55 now processing 0 total clusters:55 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:55 now processing 0 total clusters:55 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:55 now processing 0 total clusters:55 now processing 0 ...processing 0 of 2 ...processing 1 of 2 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:29 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:50 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:58 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:52 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:51 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:35 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:33 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091245%7Cgb%7CEFC44893%2E1%7C.for.2058-3448.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.2058-3448.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.2058-3448.gi%7C284091245%7Cgb%7CEFC44893%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088206%7Cgb%7CEFC41871%2E1%7C.for.9726-11381.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.9726-11381.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.9726-11381.gi%7C284088206%7Cgb%7CEFC41871%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090769%7Cgb%7CEFC44419%2E1%7C.for.11879-13257.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.11879-13257.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.11879-13257.gi%7C284090769%7Cgb%7CEFC44419%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092544%7Cgb%7CEFC46186%2E1%7C.for.17599-19499.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.17599-19499.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.17599-19499.gi%7C284092544%7Cgb%7CEFC46186%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085562%7Cgb%7CEFC39245%2E1%7C.for.17599-19490.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.17599-19490.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.17599-19490.gi%7C284085562%7Cgb%7CEFC39245%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092809%7Cgb%7CEFC46449%2E1%7C.for.27176-28278.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.27176-28278.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.27176-28278.gi%7C284092809%7Cgb%7CEFC46449%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088713%7Cgb%7CEFC42375%2E1%7C.for.27173-28341.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.27173-28341.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.27173-28341.gi%7C284088713%7Cgb%7CEFC42375%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097108%7Cgb%7CEFC50735%2E1%7C.for.27176-28269.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.27176-28269.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.27176-28269.gi%7C284097108%7Cgb%7CEFC50735%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096122%7Cgb%7CEFC49751%2E1%7C.for.36570-37856.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.36570-37856.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.36570-37856.gi%7C284096122%7Cgb%7CEFC49751%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097049%7Cgb%7CEFC50676%2E1%7C.for.40766-44415.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.40766-44415.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.40766-44415.gi%7C284097049%7Cgb%7CEFC50676%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082919%7Cgb%7CEFC36629%2E1%7C.for.46933-48362.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.46933-48362.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.46933-48362.gi%7C284082919%7Cgb%7CEFC36629%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092761%7Cgb%7CEFC46402%2E1%7C.for.48607-51519.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.48607-51519.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.48607-51519.gi%7C284092761%7Cgb%7CEFC46402%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096668%7Cgb%7CEFC50295%2E1%7C.for.52038-56344.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.52038-56344.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.52038-56344.gi%7C284096668%7Cgb%7CEFC50295%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090381%7Cgb%7CEFC44033%2E1%7C.for.68085-69508.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.68085-69508.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.68085-69508.gi%7C284090381%7Cgb%7CEFC44033%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089187%7Cgb%7CEFC42846%2E1%7C.for.79484-80433.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.79484-80433.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.79484-80433.gi%7C284089187%7Cgb%7CEFC42846%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088520%7Cgb%7CEFC42183%2E1%7C.for.83220-85117.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.83220-85117.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.83220-85117.gi%7C284088520%7Cgb%7CEFC42183%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096554%7Cgb%7CEFC50182%2E1%7C.for.102484-104225.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.102484-104225.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.102484-104225.gi%7C284096554%7Cgb%7CEFC50182%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091744%7Cgb%7CEFC45389%2E1%7C.for.102814-104225.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.102814-104225.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.102814-104225.gi%7C284091744%7Cgb%7CEFC45389%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089709%7Cgb%7CEFC43365%2E1%7C.for.110724-112340.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.110724-112340.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.110724-112340.gi%7C284089709%7Cgb%7CEFC43365%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094401%7Cgb%7CEFC48035%2E1%7C.for.113245-114583.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.113245-114583.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.113245-114583.gi%7C284094401%7Cgb%7CEFC48035%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.115441-116531.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115441-116531.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115441-116531.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.for.115501-116582.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115501-116582.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115501-116582.gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.for.115498-116531.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115498-116531.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115498-116531.gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.for.115498-116531.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115498-116531.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115498-116531.gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.for.115444-116525.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115444-116525.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115444-116525.gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.for.115492-116870.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115492-116870.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115492-116870.gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.for.115504-116570.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115504-116570.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115504-116570.gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.for.115438-116525.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115438-116525.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115438-116525.gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.for.115480-116636.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115480-116636.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115480-116636.gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.for.115441-116543.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115441-116543.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115441-116543.gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.for.115522-116534.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115522-116534.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115522-116534.gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089974%7Cgb%7CEFC43628%2E1%7C.for.118498-119501.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.118498-119501.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.118498-119501.gi%7C284089974%7Cgb%7CEFC43628%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091629%7Cgb%7CEFC45275%2E1%7C.for.127450-128726.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.127450-128726.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.127450-128726.gi%7C284091629%7Cgb%7CEFC45275%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.13913-15501.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.13913-15501.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.13913-15501.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.17798-19299.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.17798-19299.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.17798-19299.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.26570-28870.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.26570-28870.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.26570-28870.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.31607-32320.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.31607-32320.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.31607-32320.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.36769-37656.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.36769-37656.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.36769-37656.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.37756-39930.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.37756-39930.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.37756-39930.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.40211-41156.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.40211-41156.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.40211-41156.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.45455-48162.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.45455-48162.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.45455-48162.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.63284-64945.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.63284-64945.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.63284-64945.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.68284-69308.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.68284-69308.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.68284-69308.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.73105-74011.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.73105-74011.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.73105-74011.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.75340-76365.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.75340-76365.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.75340-76365.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.110923-112140.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.110923-112140.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.110923-112140.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.112203-114443.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.112203-114443.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.112203-114443.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.118692-119467.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.118692-119467.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.118692-119467.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.121483-122904.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.121483-122904.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.121483-122904.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.125143-126621.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.125143-126621.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.125143-126621.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.135656-137638.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.135656-137638.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.135656-137638.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.2232-3500.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.2232-3500.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.2232-3500.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.9889-11184.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.9889-11184.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.9889-11184.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.15338-16982.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.15338-16982.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.15338-16982.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.17002-18066.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.17002-18066.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.17002-18066.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.20595-24662.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.20595-24662.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.20595-24662.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.28129-29075.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.28129-29075.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.28129-29075.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.29082-30163.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.29082-30163.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.29082-30163.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.30190-32714.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.30190-32714.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.30190-32714.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.35639-36729.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.35639-36729.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.35639-36729.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.40965-44215.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.40965-44215.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.40965-44215.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.48799-51319.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.48799-51319.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.48799-51319.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.52237-56144.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.52237-56144.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.52237-56144.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.59692-61161.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.59692-61161.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.59692-61161.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.61226-62092.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.61226-62092.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.61226-62092.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.66169-67070.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.66169-67070.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.66169-67070.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.80131-82212.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.80131-82212.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.80131-82212.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.82569-86660.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.82569-86660.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.82569-86660.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.86679-91991.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.86679-91991.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.86679-91991.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.102683-104153.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.102683-104153.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.102683-104153.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.109075-111013.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.109075-111013.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.109075-111013.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.115640-116916.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.115640-116916.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.115640-116916.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.117143-118225.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.117143-118225.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.117143-118225.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/40_0.119470-120424.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/40_0.119470-120424.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/40_0.119470-120424.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/41_0.122479-124973.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/41_0.122479-124973.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/41_0.122479-124973.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/42_0.126381-127450.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/42_0.126381-127450.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/42_0.126381-127450.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/43_0.127649-128526.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/43_0.127649-128526.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/43_0.127649-128526.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/44_0.130880-131967.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/44_0.130880-131967.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/44_0.130880-131967.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/45_0.134516-135567.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/45_0.134516-135567.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/45_0.134516-135567.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/46_0.136640-137535.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/46_0.136640-137535.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/46_0.136640-137535.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C34 Length: 50682 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:1 current j:0 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C34.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C34.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:3 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11308%7C---NA---.for.1103-2190.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1103-2190.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1103-2190.Ar_EST_120301b_rep_c11308%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1153%7Cswim.for.26-2179.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.26-2179.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.26-2179.120301b_Contig1153%7Cswim.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19191%7C---NA---.for.1562-3123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1562-3123.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1562-3123.Ar_EST_120301b_c19191%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5150%7C---NA---.for.1214-2476.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1214-2476.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1214-2476.Ar_EST_120301b_rep_c5150%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c231%7Cfamily.for.1007-2594.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1007-2594.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1007-2594.Ar_EST_120301b_c231%7Cfamily.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9632%7Cprotein.for.1527-3329.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1527-3329.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1527-3329.Ar_EST_120301b_rep_c9632%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4785%7Cheat.for.3667-6175.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3667-6175.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3667-6175.Ar_EST_120301b_rep_c4785%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c25%7Cheat.for.3677-6842.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3677-6842.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3677-6842.Ar_EST_120301b_c25%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14633%7Clipophosphoglycan.for.4974-6319.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.4974-6319.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.4974-6319.Ar_EST_120301b_rep_c14633%7Clipophosphoglycan.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10561%7Cphosphatidic.for.6674-8012.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.6674-8012.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.6674-8012.Ar_EST_120301b_c10561%7Cphosphatidic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12466%7Cmaruca_01_m20_smart5-seq1.for.9193-10445.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.9193-10445.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.9193-10445.Ar_EST_120301b_c12466%7Cmaruca_01_m20_smart5-seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig557%7Clyc-8-c11.for.12929-14444.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.12929-14444.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.12929-14444.120301b_Contig557%7Clyc-8-c11.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6187%7Chypothetical.for.12930-14470.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.12930-14470.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.12930-14470.Ar_EST_120301b_rep_c6187%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1369%7Cphospholipase.for.15235-18239.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.15235-18239.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.15235-18239.120301b_Contig1369%7Cphospholipase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16238%7Cactin-related.for.19436-20738.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.19436-20738.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.19436-20738.Ar_EST_120301b_rep_c16238%7Cactin-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6211%7Cactin-related.for.18930-20753.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.18930-20753.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.18930-20753.Ar_EST_120301b_rep_c6211%7Cactin-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig460%7Cactin-related.for.18789-20779.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.18789-20779.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.18789-20779.120301b_Contig460%7Cactin-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9473%7Ccre-arx-3.for.19027-20240.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.19027-20240.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.19027-20240.Ar_EST_120301b_rep_c9473%7Ccre-arx-3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9479%7Cswi2.for.20409-21857.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20409-21857.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20409-21857.Ar_EST_120301b_c9479%7Cswi2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3575%7Cswi.for.21456-23264.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.21456-23264.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.21456-23264.Ar_EST_120301b_c3575%7Cswi.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8684%7Cmeloidogyne.for.23339-24828.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.23339-24828.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.23339-24828.Ar_EST_120301b_c8684%7Cmeloidogyne.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13859%7Cpas.for.24923-26220.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.24923-26220.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.24923-26220.Ar_EST_120301b_c13859%7Cpas.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3752%7Cprotein.for.28758-30821.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.28758-30821.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.28758-30821.Ar_EST_120301b_c3752%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18512%7Catp-dependent.for.29537-30850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.29537-30850.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.29537-30850.Ar_EST_120301b_c18512%7Catp-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c92%7Cproprotein.for.30412-33324.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.30412-33324.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.30412-33324.Ar_EST_120301b_c92%7Cproprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig148%7Cdomain-containing.for.33636-35938.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.33636-35938.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.33636-35938.120301b_Contig148%7Cdomain-containing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1026%7Ccarbohydrate.for.38938-42088.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.38938-42088.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.38938-42088.120301b_Contig1026%7Ccarbohydrate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18266%7Ccbpn%3A.for.42317-43586.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.42317-43586.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.42317-43586.Ar_EST_120301b_c18266%7Ccbpn%3A.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16104%7Coxidoreductase.for.48145-49395.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.48145-49395.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.48145-49395.Ar_EST_120301b_c16104%7Coxidoreductase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18279%7Coxidoreductase.for.48626-49955.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.48626-49955.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.48626-49955.Ar_EST_120301b_c18279%7Coxidoreductase.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:13 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:6 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:13 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:8 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:12 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:9 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:12 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:12 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:8 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:8 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093550%7Cgb%7CEFC47187%2E1%7C.for.2823-4207.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.2823-4207.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.2823-4207.gi%7C284093550%7Cgb%7CEFC47187%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086161%7Cgb%7CEFC39839%2E1%7C.for.3811-6713.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3811-6713.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3811-6713.gi%7C284086161%7Cgb%7CEFC39839%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096519%7Cgb%7CEFC50147%2E1%7C.for.3718-6716.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3718-6716.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3718-6716.gi%7C284096519%7Cgb%7CEFC50147%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096247%7Cgb%7CEFC49875%2E1%7C.for.3811-6683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3811-6683.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3811-6683.gi%7C284096247%7Cgb%7CEFC49875%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C25986841%7Cgb%7CAAM93756%2E1%7C.for.3826-6656.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3826-6656.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3826-6656.gi%7C25986841%7Cgb%7CAAM93756%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091896%7Cgb%7CEFC45540%2E1%7C.for.15058-17428.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.15058-17428.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.15058-17428.gi%7C284091896%7Cgb%7CEFC45540%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086563%7Cgb%7CEFC40239%2E1%7C.for.15070-17413.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.15070-17413.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.15070-17413.gi%7C284086563%7Cgb%7CEFC40239%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083916%7Cgb%7CEFC37614%2E1%7C.for.15061-16741.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.15061-16741.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.15061-16741.gi%7C284083916%7Cgb%7CEFC37614%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083373%7Cgb%7CEFC37077%2E1%7C.for.16725-19001.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.16725-19001.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.16725-19001.gi%7C284083373%7Cgb%7CEFC37077%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082917%7Cgb%7CEFC36627%2E1%7C.for.18929-20742.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.18929-20742.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.18929-20742.gi%7C284082917%7Cgb%7CEFC36627%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096936%7Cgb%7CEFC50563%2E1%7C.for.20691-23059.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20691-23059.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20691-23059.gi%7C284096936%7Cgb%7CEFC50563%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093262%7Cgb%7CEFC46901%2E1%7C.for.20697-23032.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20697-23032.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20697-23032.gi%7C284093262%7Cgb%7CEFC46901%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085362%7Cgb%7CEFC39046%2E1%7C.for.20565-23233.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20565-23233.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20565-23233.gi%7C284085362%7Cgb%7CEFC39046%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093648%7Cgb%7CEFC47285%2E1%7C.for.20688-23206.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20688-23206.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20688-23206.gi%7C284093648%7Cgb%7CEFC47285%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095906%7Cgb%7CEFC49535%2E1%7C.for.20715-23062.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20715-23062.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20715-23062.gi%7C284095906%7Cgb%7CEFC49535%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087958%7Cgb%7CEFC41624%2E1%7C.for.20487-23215.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20487-23215.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20487-23215.gi%7C284087958%7Cgb%7CEFC41624%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096449%7Cgb%7CEFC50077%2E1%7C.for.30726-32926.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.30726-32926.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.30726-32926.gi%7C284096449%7Cgb%7CEFC50077%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089770%7Cgb%7CEFC43425%2E1%7C.for.45290-46981.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.45290-46981.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.45290-46981.gi%7C284089770%7Cgb%7CEFC43425%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093999%7Cgb%7CEFC47635%2E1%7C.for.45308-46900.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.45308-46900.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.45308-46900.gi%7C284093999%7Cgb%7CEFC47635%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084374%7Cgb%7CEFC38067%2E1%7C.for.48179-50148.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.48179-50148.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.48179-50148.gi%7C284084374%7Cgb%7CEFC38067%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:7 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:7 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:6 now processing 0 total clusters:6 now processing 0 total clusters:6 now processing 0 total clusters:6 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:6 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:6 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:9 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.13101-14294.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.13101-14294.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.13101-14294.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.15434-18039.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.15434-18039.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.15434-18039.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.19128-20553.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.19128-20553.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.19128-20553.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.20608-23064.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.20608-23064.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.20608-23064.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.23538-24628.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.23538-24628.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.23538-24628.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.25122-26022.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.25122-26022.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.25122-26022.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.30611-33124.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.30611-33124.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.30611-33124.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.33835-35738.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.33835-35738.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.33835-35738.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.39137-41888.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.39137-41888.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.39137-41888.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.225-2929.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.225-2929.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.225-2929.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.3022-6516.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.3022-6516.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.3022-6516.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.6873-7812.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.6873-7812.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.6873-7812.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.9392-10249.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.9392-10249.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.9392-10249.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.15257-17234.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.15257-17234.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.15257-17234.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.29732-30650.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.29732-30650.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.29732-30650.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.42516-43386.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.42516-43386.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.42516-43386.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.48344-49948.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.48344-49948.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.48344-49948.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C35 Length: 58974 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:4 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:1 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:5 current j:0 j_size:5 current j:1 j_size:5 current j:2 j_size:5 current j:3 j_size:5 current j:4 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C35.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C35.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8607%7Cgtp-binding.for.2-1886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.2-1886.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.2-1886.Ar_EST_120301b_c8607%7Cgtp-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6065%7Csubtilisin-like.for.2365-4444.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.2365-4444.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.2365-4444.Ar_EST_120301b_rep_c6065%7Csubtilisin-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1399%7Cn-ethylmaleimide.for.5160-6458.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.5160-6458.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.5160-6458.Ar_EST_120301b_c1399%7Cn-ethylmaleimide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11943%7Ccytochrome.for.7916-9267.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.7916-9267.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.7916-9267.Ar_EST_120301b_c11943%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9590%7Ccytochrome.for.8478-9742.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.8478-9742.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.8478-9742.Ar_EST_120301b_c9590%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1055%7Cregulator.for.12264-13963.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.12264-13963.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.12264-13963.120301b_Contig1055%7Cregulator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8207%7Ccytochrome.for.14989-17301.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.14989-17301.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.14989-17301.Ar_EST_120301b_c8207%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16878%7Chypothetical.for.18560-19916.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.18560-19916.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.18560-19916.Ar_EST_120301b_c16878%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12427%7Ctelomerase.for.22706-24114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.22706-24114.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.22706-24114.Ar_EST_120301b_c12427%7Ctelomerase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11557%7Cprotein.for.28505-30052.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.28505-30052.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.28505-30052.Ar_EST_120301b_c11557%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16891%7Czinc.for.29355-30729.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.29355-30729.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.29355-30729.Ar_EST_120301b_c16891%7Czinc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14460%7Cspastic.for.33103-34283.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.33103-34283.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.33103-34283.Ar_EST_120301b_c14460%7Cspastic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13834%7Cprotein.for.36324-37549.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.36324-37549.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.36324-37549.Ar_EST_120301b_c13834%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1421%7Ctestis.for.43982-45419.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.43982-45419.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.43982-45419.Ar_EST_120301b_c1421%7Ctestis.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16539%7C---NA---.for.46011-47317.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.46011-47317.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.46011-47317.Ar_EST_120301b_c16539%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11932%7Ce3.for.47499-48777.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.47499-48777.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.47499-48777.Ar_EST_120301b_c11932%7Ce3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12237%7Ctplate.for.52411-53828.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.52411-53828.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.52411-53828.Ar_EST_120301b_c12237%7Ctplate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1748%7Cpredicted.for.54228-55364.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.54228-55364.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.54228-55364.Ar_EST_120301b_c1748%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c112%7Cn-acyl.for.55635-57533.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.55635-57533.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.55635-57533.Ar_EST_120301b_c112%7Cn-acyl.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:52 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:39 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:61 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:47 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:51 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:32 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:44 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:50 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:50 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088120%7Cgb%7CEFC41785%2E1%7C.for.1-1806.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.1-1806.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.1-1806.gi%7C284088120%7Cgb%7CEFC41785%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081631%7Cgb%7CEFC35564%2E1%7C.for.5213-6594.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.5213-6594.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.5213-6594.gi%7C284081631%7Cgb%7CEFC35564%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089466%7Cgb%7CEFC43123%2E1%7C.for.7830-9733.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.7830-9733.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.7830-9733.gi%7C284089466%7Cgb%7CEFC43123%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083307%7Cgb%7CEFC37012%2E1%7C.for.13318-14336.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13318-14336.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13318-14336.gi%7C284083307%7Cgb%7CEFC37012%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090963%7Cgb%7CEFC44612%2E1%7C.for.13747-15125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13747-15125.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13747-15125.gi%7C284090963%7Cgb%7CEFC44612%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.for.14101-15107.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.14101-15107.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.14101-15107.gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081402%7Cgb%7CEFC35430%2E1%7C.for.14110-15161.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.14110-15161.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.14110-15161.gi%7C284081402%7Cgb%7CEFC35430%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096471%7Cgb%7CEFC50099%2E1%7C.for.13768-14993.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13768-14993.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13768-14993.gi%7C284096471%7Cgb%7CEFC50099%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094163%7Cgb%7CEFC47798%2E1%7C.for.13732-15062.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13732-15062.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13732-15062.gi%7C284094163%7Cgb%7CEFC47798%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091693%7Cgb%7CEFC45338%2E1%7C.for.13768-15032.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13768-15032.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13768-15032.gi%7C284091693%7Cgb%7CEFC45338%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095876%7Cgb%7CEFC49505%2E1%7C.for.13825-15098.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13825-15098.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13825-15098.gi%7C284095876%7Cgb%7CEFC49505%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093839%7Cgb%7CEFC47475%2E1%7C.for.14101-15107.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.14101-15107.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.14101-15107.gi%7C284093839%7Cgb%7CEFC47475%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094409%7Cgb%7CEFC48043%2E1%7C.for.15898-17326.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.15898-17326.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.15898-17326.gi%7C284094409%7Cgb%7CEFC48043%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095125%7Cgb%7CEFC48757%2E1%7C.for.15799-17275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.15799-17275.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.15799-17275.gi%7C284095125%7Cgb%7CEFC48757%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080983%7Cgb%7CEFC35253%2E1%7C.for.40888-42371.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42371.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42371.gi%7C284080983%7Cgb%7CEFC35253%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083648%7Cgb%7CEFC37349%2E1%7C.for.40888-42344.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42344.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42344.gi%7C284083648%7Cgb%7CEFC37349%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084263%7Cgb%7CEFC37957%2E1%7C.for.41095-42344.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41095-42344.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41095-42344.gi%7C284084263%7Cgb%7CEFC37957%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096419%7Cgb%7CEFC50047%2E1%7C.for.41068-42347.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41068-42347.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41068-42347.gi%7C284096419%7Cgb%7CEFC50047%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087065%7Cgb%7CEFC40737%2E1%7C.for.41398-42347.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41398-42347.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41398-42347.gi%7C284087065%7Cgb%7CEFC40737%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090976%7Cgb%7CEFC44625%2E1%7C.for.40888-42359.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42359.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42359.gi%7C284090976%7Cgb%7CEFC44625%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081047%7Cgb%7CEFC35275%2E1%7C.for.40888-42131.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42131.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42131.gi%7C284081047%7Cgb%7CEFC35275%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082158%7Cgb%7CEFC35924%2E1%7C.for.40888-42368.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42368.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42368.gi%7C284082158%7Cgb%7CEFC35924%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094671%7Cgb%7CEFC48304%2E1%7C.for.41038-42356.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41038-42356.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41038-42356.gi%7C284094671%7Cgb%7CEFC48304%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086669%7Cgb%7CEFC40344%2E1%7C.for.41263-42338.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41263-42338.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41263-42338.gi%7C284086669%7Cgb%7CEFC40344%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096635%7Cgb%7CEFC50262%2E1%7C.for.43934-46857.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.43934-46857.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.43934-46857.gi%7C284096635%7Cgb%7CEFC50262%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083461%7Cgb%7CEFC37164%2E1%7C.for.55969-57425.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.55969-57425.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.55969-57425.gi%7C284083461%7Cgb%7CEFC37164%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:7 now processing 0 total clusters:7 now processing 0 in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:4 now processing 0 total clusters:4 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:4 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:4 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:2 now processing 0 total clusters:2 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.201-1686.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.201-1686.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.201-1686.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.5359-6394.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.5359-6394.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.5359-6394.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.8029-9542.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.8029-9542.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.8029-9542.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.12463-14925.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.12463-14925.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.12463-14925.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.15188-17126.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.15188-17126.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.15188-17126.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.18743-19716.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.18743-19716.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.18743-19716.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.22905-23923.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.22905-23923.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.22905-23923.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.28704-30529.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.28704-30529.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.28704-30529.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.33302-37349.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.33302-37349.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.33302-37349.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.41087-42171.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.41087-42171.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.41087-42171.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.44133-47117.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.44133-47117.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.44133-47117.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.52610-53628.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.52610-53628.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.52610-53628.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.55834-57333.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.55834-57333.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.55834-57333.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C36 Length: 164851 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:4 current j:0 j_size:4 current j:1 j_size:4 current j:2 j_size:4 current j:3 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C36.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C36.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:8 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:10 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig681%7Cpredicted.for.1612-3428.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.1612-3428.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.1612-3428.120301b_Contig681%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig244%7Cpeptidase.for.1-2453.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.1-2453.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.1-2453.120301b_Contig244%7Cpeptidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10191%7Cprotein.for.7049-8512.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.7049-8512.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.7049-8512.Ar_EST_120301b_c10191%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16233%7Cpre-mrna-processing.for.7813-8914.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.7813-8914.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.7813-8914.Ar_EST_120301b_c16233%7Cpre-mrna-processing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c213%7C14-3-3.for.10760-12363.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.10760-12363.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.10760-12363.Ar_EST_120301b_c213%7C14-3-3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16140%7Culva.for.11130-12229.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.11130-12229.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.11130-12229.Ar_EST_120301b_rep_c16140%7Culva.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5489%7Clipoxygenase.for.8318-9929.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.8318-9929.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.8318-9929.Ar_EST_120301b_rep_c5489%7Clipoxygenase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig419%7Clipoxygenase.for.8371-10887.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.8371-10887.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.8371-10887.120301b_Contig419%7Clipoxygenase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c582%7Cprotein.for.9744-11960.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.9744-11960.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.9744-11960.Ar_EST_120301b_c582%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15523%7Chypothetical.for.12770-14142.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.12770-14142.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.12770-14142.Ar_EST_120301b_c15523%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17561%7Cexported.for.13626-14946.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.13626-14946.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.13626-14946.Ar_EST_120301b_c17561%7Cexported.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3144%7Cexported.for.13714-15185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.13714-15185.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.13714-15185.Ar_EST_120301b_c3144%7Cexported.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4715%7Cpyruvate.for.15987-18058.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.15987-18058.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.15987-18058.Ar_EST_120301b_rep_c4715%7Cpyruvate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8703%7Cadenylate.for.18415-20385.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.18415-20385.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.18415-20385.Ar_EST_120301b_c8703%7Cadenylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14309%7Cpshb008xj07f.for.19602-20811.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.19602-20811.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.19602-20811.Ar_EST_120301b_c14309%7Cpshb008xj07f.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2673%7Chypothetical.for.25046-26505.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.25046-26505.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.25046-26505.Ar_EST_120301b_c2673%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19713%7Cfigitidae.for.25465-26531.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.25465-26531.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.25465-26531.Ar_EST_120301b_c19713%7Cfigitidae.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10941%7Cunnamed.for.25267-26580.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.25267-26580.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.25267-26580.Ar_EST_120301b_c10941%7Cunnamed.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig952%7Calkaline.for.27039-28602.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.27039-28602.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.27039-28602.120301b_Contig952%7Calkaline.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1354%7Cvacuolar.for.29723-31176.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.29723-31176.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.29723-31176.Ar_EST_120301b_c1354%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2160%7Cheat.for.31661-33512.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.31661-33512.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.31661-33512.Ar_EST_120301b_c2160%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig72%7Cheat.for.32921-34988.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.32921-34988.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.32921-34988.120301b_Contig72%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14835%7Cheat.for.33292-34215.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.33292-34215.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.33292-34215.Ar_EST_120301b_c14835%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11328%7Cca00-xx-cs1-019-e03-.for.37444-38809.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.37444-38809.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.37444-38809.Ar_EST_120301b_c11328%7Cca00-xx-cs1-019-e03-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14706%7Capoptosis.for.38105-39109.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.38105-39109.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.38105-39109.Ar_EST_120301b_c14706%7Capoptosis.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13920%7Cnormalized.for.42436-43717.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.42436-43717.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.42436-43717.Ar_EST_120301b_c13920%7Cnormalized.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11389%7C---NA---.for.43257-45228.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.43257-45228.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.43257-45228.Ar_EST_120301b_c11389%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8045%7Chypothetical.for.44921-46139.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.44921-46139.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.44921-46139.Ar_EST_120301b_c8045%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c696%7Cmethyltransferase.for.45942-47448.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.45942-47448.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.45942-47448.Ar_EST_120301b_c696%7Cmethyltransferase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c479%7Cras.for.47229-48708.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.47229-48708.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.47229-48708.Ar_EST_120301b_c479%7Cras.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10880%7Ccagn.for.47999-49358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.47999-49358.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.47999-49358.Ar_EST_120301b_c10880%7Ccagn.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11023%7Cwoods.for.49911-51464.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.49911-51464.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.49911-51464.Ar_EST_120301b_c11023%7Cwoods.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11544%7Cmorn.for.51230-52774.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.51230-52774.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.51230-52774.Ar_EST_120301b_c11544%7Cmorn.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14618%7Cfp661852.for.52446-53539.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.52446-53539.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.52446-53539.Ar_EST_120301b_rep_c14618%7Cfp661852.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6769%7Cfp779243.for.52203-53852.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.52203-53852.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.52203-53852.Ar_EST_120301b_rep_c6769%7Cfp779243.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1926%7Cglyoxylate.for.53381-54954.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.53381-54954.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.53381-54954.Ar_EST_120301b_c1926%7Cglyoxylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19845%7Cmajor.for.55613-58074.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.55613-58074.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.55613-58074.Ar_EST_120301b_c19845%7Cmajor.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6910%7Cwd-40.for.57551-59082.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.57551-59082.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.57551-59082.Ar_EST_120301b_rep_c6910%7Cwd-40.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16202%7Cmkiaa0840.for.60733-62118.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.60733-62118.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.60733-62118.Ar_EST_120301b_c16202%7Cmkiaa0840.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1072%7Czinc.for.61536-63167.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.61536-63167.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.61536-63167.Ar_EST_120301b_c1072%7Czinc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7880%7Cprotein.for.64297-66068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.64297-66068.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.64297-66068.Ar_EST_120301b_c7880%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19724%7Ciris.for.63956-65289.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.63956-65289.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.63956-65289.Ar_EST_120301b_c19724%7Ciris.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18072%7C3-carboxymuconate.for.71894-73072.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.71894-73072.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.71894-73072.Ar_EST_120301b_c18072%7C3-carboxymuconate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18444%7C60s.for.80598-81815.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.80598-81815.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.80598-81815.Ar_EST_120301b_c18444%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig241%7Cpredicted.for.82554-84883.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.82554-84883.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.82554-84883.120301b_Contig241%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17780%7Cssalplnb505110.for.82703-83944.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.82703-83944.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.82703-83944.Ar_EST_120301b_c17780%7Cssalplnb505110.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15355%7C---NA---.for.89954-91419.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.89954-91419.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.89954-91419.Ar_EST_120301b_c15355%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17615%7Cdk939318.for.91151-92547.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.91151-92547.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.91151-92547.Ar_EST_120301b_c17615%7Cdk939318.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1920%7Cloc100125160.for.93005-94506.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.93005-94506.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.93005-94506.Ar_EST_120301b_c1920%7Cloc100125160.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c326%7Cpeptide-n.for.94452-96001.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.94452-96001.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.94452-96001.Ar_EST_120301b_c326%7Cpeptide-n.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1414%7Cpredicted.for.96429-97878.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.96429-97878.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.96429-97878.Ar_EST_120301b_c1414%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16511%7Cprotein.for.100071-101309.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100071-101309.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100071-101309.Ar_EST_120301b_c16511%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17541%7Csec14l1.for.100091-101441.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100091-101441.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100091-101441.Ar_EST_120301b_c17541%7Csec14l1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8021%7Cguanine.for.100862-102783.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100862-102783.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100862-102783.Ar_EST_120301b_c8021%7Cguanine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14826%7Cphenazine.for.112041-113316.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.112041-113316.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.112041-113316.Ar_EST_120301b_c14826%7Cphenazine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8891%7Cmacro.for.112626-114075.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.112626-114075.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.112626-114075.Ar_EST_120301b_c8891%7Cmacro.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9485%7Cer-golgi.for.113492-115258.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.113492-115258.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.113492-115258.Ar_EST_120301b_c9485%7Cer-golgi.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9610%7Cpeptide.for.115387-116807.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.115387-116807.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.115387-116807.Ar_EST_120301b_c9610%7Cpeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8797%7Cpseudouridine.for.116507-118099.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.116507-118099.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.116507-118099.Ar_EST_120301b_c8797%7Cpseudouridine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4203%7Cmitogen-activated.for.117483-119541.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117483-119541.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117483-119541.Ar_EST_120301b_rep_c4203%7Cmitogen-activated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig609%7Cmitogen-activated.for.118248-119740.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118248-119740.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118248-119740.120301b_Contig609%7Cmitogen-activated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20137%7Cchromatin.for.121160-123912.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.121160-123912.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.121160-123912.Ar_EST_120301b_c20137%7Cchromatin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7867%7Cpredicted.for.123600-125572.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.123600-125572.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.123600-125572.Ar_EST_120301b_c7867%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18812%7Cmetal.for.123289-124801.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.123289-124801.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.123289-124801.Ar_EST_120301b_c18812%7Cmetal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2196%7Cchromosome.for.124897-126496.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.124897-126496.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.124897-126496.Ar_EST_120301b_c2196%7Cchromosome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13274%7Cribose-5-phosphate.for.127761-129064.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.127761-129064.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.127761-129064.Ar_EST_120301b_c13274%7Cribose-5-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12734%7Cribose-5-phosphate.for.127554-129000.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.127554-129000.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.127554-129000.Ar_EST_120301b_c12734%7Cribose-5-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c862%7Cgtp-binding.for.129545-130880.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129545-130880.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129545-130880.Ar_EST_120301b_c862%7Cgtp-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12075%7Cras-related.for.129414-130749.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129414-130749.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129414-130749.Ar_EST_120301b_c12075%7Cras-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12517%7Cks20025f06.for.130671-131613.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.130671-131613.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.130671-131613.Ar_EST_120301b_c12517%7Cks20025f06.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15951%7Csplicing.for.130942-132303.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.130942-132303.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.130942-132303.Ar_EST_120301b_c15951%7Csplicing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14460%7Cspastic.for.140331-141326.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.140331-141326.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.140331-141326.Ar_EST_120301b_c14460%7Cspastic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11557%7Cprotein.for.144408-145922.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.144408-145922.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.144408-145922.Ar_EST_120301b_c11557%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16858%7Csensor.for.147185-148571.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.147185-148571.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.147185-148571.Ar_EST_120301b_c16858%7Csensor.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7923%7Cprotein.for.150560-152432.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.150560-152432.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.150560-152432.Ar_EST_120301b_c7923%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2557%7Ccentromere.for.150215-152133.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.150215-152133.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.150215-152133.Ar_EST_120301b_c2557%7Ccentromere.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16845%7Ccglsc1ng-t3-006_k21_17apr2009_085.for.159428-160814.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.159428-160814.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.159428-160814.Ar_EST_120301b_c16845%7Ccglsc1ng-t3-006_k21_17apr2009_085.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2868%7Clongevity.for.162089-164040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.162089-164040.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.162089-164040.Ar_EST_120301b_c2868%7Clongevity.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:41 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:33 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:29 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:53 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:46 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:46 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:58 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:32 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090638%7Cgb%7CEFC44289%2E1%7C.for.2846-5161.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.2846-5161.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.2846-5161.gi%7C284090638%7Cgb%7CEFC44289%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092635%7Cgb%7CEFC46276%2E1%7C.for.6522-8824.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.6522-8824.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.6522-8824.gi%7C284092635%7Cgb%7CEFC46276%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087213%7Cgb%7CEFC40884%2E1%7C.for.15979-17888.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.15979-17888.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.15979-17888.gi%7C284087213%7Cgb%7CEFC40884%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096878%7Cgb%7CEFC50505%2E1%7C.for.17488-18548.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.17488-18548.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.17488-18548.gi%7C284096878%7Cgb%7CEFC50505%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097085%7Cgb%7CEFC50712%2E1%7C.for.23058-25469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.23058-25469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.23058-25469.gi%7C284097085%7Cgb%7CEFC50712%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090588%7Cgb%7CEFC44239%2E1%7C.for.31826-34626.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.31826-34626.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.31826-34626.gi%7C284090588%7Cgb%7CEFC44239%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091692%7Cgb%7CEFC45337%2E1%7C.for.31688-35097.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.31688-35097.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.31688-35097.gi%7C284091692%7Cgb%7CEFC45337%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096964%7Cgb%7CEFC50591%2E1%7C.for.47338-48695.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.47338-48695.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.47338-48695.gi%7C284096964%7Cgb%7CEFC50591%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092317%7Cgb%7CEFC45959%2E1%7C.for.47227-48713.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.47227-48713.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.47227-48713.gi%7C284092317%7Cgb%7CEFC45959%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094675%7Cgb%7CEFC48308%2E1%7C.for.51188-52570.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.51188-52570.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.51188-52570.gi%7C284094675%7Cgb%7CEFC48308%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094767%7Cgb%7CEFC48400%2E1%7C.for.53430-54985.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.53430-54985.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.53430-54985.gi%7C284094767%7Cgb%7CEFC48400%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090385%7Cgb%7CEFC44037%2E1%7C.for.55683-57985.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.55683-57985.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.55683-57985.gi%7C284090385%7Cgb%7CEFC44037%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087326%7Cgb%7CEFC40996%2E1%7C.for.55683-58012.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.55683-58012.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.55683-58012.gi%7C284087326%7Cgb%7CEFC40996%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089393%7Cgb%7CEFC43051%2E1%7C.for.58456-60867.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.58456-60867.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.58456-60867.gi%7C284089393%7Cgb%7CEFC43051%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092889%7Cgb%7CEFC46529%2E1%7C.for.58606-60831.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.58606-60831.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.58606-60831.gi%7C284092889%7Cgb%7CEFC46529%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093346%7Cgb%7CEFC46984%2E1%7C.for.93791-96386.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.93791-96386.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.93791-96386.gi%7C284093346%7Cgb%7CEFC46984%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091412%7Cgb%7CEFC45059%2E1%7C.for.98827-100405.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.98827-100405.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.98827-100405.gi%7C284091412%7Cgb%7CEFC45059%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092652%7Cgb%7CEFC46293%2E1%7C.for.100758-102737.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100758-102737.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100758-102737.gi%7C284092652%7Cgb%7CEFC46293%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084774%7Cgb%7CEFC38463%2E1%7C.for.101315-102716.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.101315-102716.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.101315-102716.gi%7C284084774%7Cgb%7CEFC38463%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084712%7Cgb%7CEFC38402%2E1%7C.for.100785-102737.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100785-102737.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100785-102737.gi%7C284084712%7Cgb%7CEFC38402%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083518%7Cgb%7CEFC37220%2E1%7C.for.100776-102716.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100776-102716.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100776-102716.gi%7C284083518%7Cgb%7CEFC37220%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090770%7Cgb%7CEFC44420%2E1%7C.for.100977-102713.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100977-102713.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100977-102713.gi%7C284090770%7Cgb%7CEFC44420%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095980%7Cgb%7CEFC49609%2E1%7C.for.100770-102716.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100770-102716.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100770-102716.gi%7C284095980%7Cgb%7CEFC49609%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091782%7Cgb%7CEFC45427%2E1%7C.for.100941-101983.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100941-101983.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100941-101983.gi%7C284091782%7Cgb%7CEFC45427%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085503%7Cgb%7CEFC39186%2E1%7C.for.100785-102746.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100785-102746.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100785-102746.gi%7C284085503%7Cgb%7CEFC39186%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093388%7Cgb%7CEFC47026%2E1%7C.for.100995-101983.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100995-101983.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100995-101983.gi%7C284093388%7Cgb%7CEFC47026%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095344%7Cgb%7CEFC48975%2E1%7C.for.100782-102776.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100782-102776.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100782-102776.gi%7C284095344%7Cgb%7CEFC48975%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095754%7Cgb%7CEFC49384%2E1%7C.for.100851-102731.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100851-102731.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100851-102731.gi%7C284095754%7Cgb%7CEFC49384%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084944%7Cgb%7CEFC38632%2E1%7C.for.111621-113308.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.111621-113308.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.111621-113308.gi%7C284084944%7Cgb%7CEFC38632%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080802%7Cgb%7CEFC35193%2E1%7C.for.112682-114013.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.112682-114013.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.112682-114013.gi%7C284080802%7Cgb%7CEFC35193%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094932%7Cgb%7CEFC48564%2E1%7C.for.112845-113989.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.112845-113989.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.112845-113989.gi%7C284094932%7Cgb%7CEFC48564%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087397%7Cgb%7CEFC41067%2E1%7C.for.115312-117053.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.115312-117053.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.115312-117053.gi%7C284087397%7Cgb%7CEFC41067%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096928%7Cgb%7CEFC50555%2E1%7C.for.116338-118126.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.116338-118126.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.116338-118126.gi%7C284096928%7Cgb%7CEFC50555%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082445%7Cgb%7CEFC36163%2E1%7C.for.118317-119683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118317-119683.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118317-119683.gi%7C284082445%7Cgb%7CEFC36163%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091587%7Cgb%7CEFC45233%2E1%7C.for.118145-119079.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118145-119079.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118145-119079.gi%7C284091587%7Cgb%7CEFC45233%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097165%7Cgb%7CEFC50792%2E1%7C.for.117849-119659.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117849-119659.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117849-119659.gi%7C284097165%7Cgb%7CEFC50792%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081068%7Cgb%7CEFC35282%2E1%7C.for.117846-119242.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117846-119242.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117846-119242.gi%7C284081068%7Cgb%7CEFC35282%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094136%7Cgb%7CEFC47771%2E1%7C.for.117685-119707.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117685-119707.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117685-119707.gi%7C284094136%7Cgb%7CEFC47771%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090349%7Cgb%7CEFC44001%2E1%7C.for.117739-119683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117739-119683.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117739-119683.gi%7C284090349%7Cgb%7CEFC44001%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082443%7Cgb%7CEFC36161%2E1%7C.for.117712-119016.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117712-119016.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117712-119016.gi%7C284082443%7Cgb%7CEFC36161%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085688%7Cgb%7CEFC39370%2E1%7C.for.117739-119659.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117739-119659.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117739-119659.gi%7C284085688%7Cgb%7CEFC39370%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090237%7Cgb%7CEFC43890%2E1%7C.for.117858-119587.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117858-119587.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117858-119587.gi%7C284090237%7Cgb%7CEFC43890%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096572%7Cgb%7CEFC50200%2E1%7C.for.118121-119272.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118121-119272.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118121-119272.gi%7C284096572%7Cgb%7CEFC50200%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088224%7Cgb%7CEFC41889%2E1%7C.for.118154-119554.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118154-119554.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118154-119554.gi%7C284088224%7Cgb%7CEFC41889%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090447%7Cgb%7CEFC44099%2E1%7C.for.118118-119551.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118118-119551.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118118-119551.gi%7C284090447%7Cgb%7CEFC44099%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083991%7Cgb%7CEFC37688%2E1%7C.for.117849-119671.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117849-119671.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117849-119671.gi%7C284083991%7Cgb%7CEFC37688%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089853%7Cgb%7CEFC43508%2E1%7C.for.118106-119551.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118106-119551.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118106-119551.gi%7C284089853%7Cgb%7CEFC43508%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088374%7Cgb%7CEFC42038%2E1%7C.for.118139-119554.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118139-119554.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118139-119554.gi%7C284088374%7Cgb%7CEFC42038%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086220%7Cgb%7CEFC39898%2E1%7C.for.118022-119575.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118022-119575.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118022-119575.gi%7C284086220%7Cgb%7CEFC39898%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086311%7Cgb%7CEFC39988%2E1%7C.for.118371-119557.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118371-119557.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118371-119557.gi%7C284086311%7Cgb%7CEFC39988%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084616%7Cgb%7CEFC38307%2E1%7C.for.117852-119542.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117852-119542.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117852-119542.gi%7C284084616%7Cgb%7CEFC38307%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087921%7Cgb%7CEFC41587%2E1%7C.for.118590-119671.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118590-119671.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118590-119671.gi%7C284087921%7Cgb%7CEFC41587%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089145%7Cgb%7CEFC42804%2E1%7C.for.117846-119668.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117846-119668.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117846-119668.gi%7C284089145%7Cgb%7CEFC42804%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090070%7Cgb%7CEFC43724%2E1%7C.for.118157-119560.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118157-119560.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118157-119560.gi%7C284090070%7Cgb%7CEFC43724%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093567%7Cgb%7CEFC47204%2E1%7C.for.118106-119281.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118106-119281.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118106-119281.gi%7C284093567%7Cgb%7CEFC47204%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097055%7Cgb%7CEFC50682%2E1%7C.for.119366-121330.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.119366-121330.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.119366-121330.gi%7C284097055%7Cgb%7CEFC50682%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088135%7Cgb%7CEFC41800%2E1%7C.for.127290-128284.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.127290-128284.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.127290-128284.gi%7C284088135%7Cgb%7CEFC41800%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092330%7Cgb%7CEFC45972%2E1%7C.for.129550-130820.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129550-130820.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129550-130820.gi%7C284092330%7Cgb%7CEFC45972%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085175%7Cgb%7CEFC38861%2E1%7C.for.129559-130835.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129559-130835.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129559-130835.gi%7C284085175%7Cgb%7CEFC38861%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087489%7Cgb%7CEFC41158%2E1%7C.for.129436-130832.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129436-130832.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129436-130832.gi%7C284087489%7Cgb%7CEFC41158%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086692%7Cgb%7CEFC40367%2E1%7C.for.129559-130835.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129559-130835.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129559-130835.gi%7C284086692%7Cgb%7CEFC40367%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093218%7Cgb%7CEFC46857%2E1%7C.for.129559-130811.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129559-130811.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129559-130811.gi%7C284093218%7Cgb%7CEFC46857%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095576%7Cgb%7CEFC49206%2E1%7C.for.129424-130829.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129424-130829.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129424-130829.gi%7C284095576%7Cgb%7CEFC49206%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080992%7Cgb%7CEFC35256%2E1%7C.for.129547-130676.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129547-130676.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129547-130676.gi%7C284080992%7Cgb%7CEFC35256%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089507%7Cgb%7CEFC43164%2E1%7C.for.129559-130829.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129559-130829.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129559-130829.gi%7C284089507%7Cgb%7CEFC43164%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092994%7Cgb%7CEFC46634%2E1%7C.for.129670-130817.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129670-130817.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129670-130817.gi%7C284092994%7Cgb%7CEFC46634%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093669%7Cgb%7CEFC47306%2E1%7C.for.130259-132474.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.130259-132474.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.130259-132474.gi%7C284093669%7Cgb%7CEFC47306%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090027%7Cgb%7CEFC43681%2E1%7C.for.132434-133461.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.132434-133461.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.132434-133461.gi%7C284090027%7Cgb%7CEFC43681%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089533%7Cgb%7CEFC43190%2E1%7C.for.150502-152561.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.150502-152561.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.150502-152561.gi%7C284089533%7Cgb%7CEFC43190%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088991%7Cgb%7CEFC42651%2E1%7C.for.153131-154812.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.153131-154812.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.153131-154812.gi%7C284088991%7Cgb%7CEFC42651%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087025%7Cgb%7CEFC40697%2E1%7C.for.153125-154812.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.153125-154812.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.153125-154812.gi%7C284087025%7Cgb%7CEFC40697%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096724%7Cgb%7CEFC50351%2E1%7C.for.157597-158705.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.157597-158705.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.157597-158705.gi%7C284096724%7Cgb%7CEFC50351%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 10 ...processing 1 of 10 ...processing 2 of 10 ...processing 3 of 10 ...processing 4 of 10 ...processing 5 of 10 ...processing 6 of 10 ...processing 7 of 10 ...processing 8 of 10 ...processing 9 of 10 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:17 now processing 0 total clusters:17 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 ...processing 0 of 10 ...processing 1 of 10 ...processing 2 of 10 ...processing 3 of 10 ...processing 4 of 10 ...processing 5 of 10 ...processing 6 of 10 ...processing 7 of 10 ...processing 8 of 10 ...processing 9 of 10 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.0-3228.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.0-3228.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.0-3228.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.12969-14985.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.12969-14985.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.12969-14985.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.23257-26383.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.23257-26383.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.23257-26383.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.50110-51272.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.50110-51272.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.50110-51272.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.51429-54785.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.51429-54785.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.51429-54785.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.57750-60667.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.57750-60667.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.57750-60667.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.60932-62967.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.60932-62967.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.60932-62967.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.82753-84683.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.82753-84683.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.82753-84683.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.90153-92347.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.90153-92347.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.90153-92347.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.100270-101241.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.100270-101241.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.100270-101241.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.115511-119540.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.115511-119540.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.115511-119540.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.119565-121130.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.119565-121130.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.119565-121130.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.121359-126296.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.121359-126296.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.121359-126296.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.127489-128084.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.127489-128084.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.127489-128084.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.153119-154724.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.153119-154724.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.153119-154724.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.3045-4961.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.3045-4961.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.3045-4961.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.6721-10687.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.6721-10687.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.6721-10687.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.16178-18351.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.16178-18351.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.16178-18351.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.18609-20623.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.18609-20623.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.18609-20623.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.27238-28402.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.27238-28402.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.27238-28402.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.31855-34897.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.31855-34897.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.31855-34897.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.37643-39024.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.37643-39024.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.37643-39024.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.42626-43522.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.42626-43522.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.42626-43522.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.46141-47248.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.46141-47248.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.46141-47248.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.47426-49166.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.47426-49166.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.47426-49166.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.55882-57812.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.55882-57812.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.55882-57812.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.64155-65868.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.64155-65868.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.64155-65868.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.72064-72872.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.72064-72872.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.72064-72872.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.80797-81615.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.80797-81615.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.80797-81615.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.93204-96186.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.93204-96186.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.93204-96186.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.96628-97678.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.96628-97678.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.96628-97678.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.99026-100205.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.99026-100205.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.99026-100205.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.100957-102583.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.100957-102583.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.100957-102583.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.111820-115058.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.111820-115058.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.111820-115058.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.127753-128864.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.127753-128864.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.127753-128864.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.129613-132274.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.129613-132274.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.129613-132274.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.140372-141147.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.140372-141147.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.140372-141147.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.144590-145738.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.144590-145738.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.144590-145738.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.147384-148390.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.147384-148390.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.147384-148390.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.150414-152436.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.150414-152436.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.150414-152436.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/40_0.157796-158505.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/40_0.157796-158505.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/40_0.157796-158505.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/41_0.159627-160614.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/41_0.159627-160614.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/41_0.159627-160614.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/42_0.162288-163840.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/42_0.162288-163840.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/42_0.162288-163840.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C37 Length: 131203 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:4 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:4 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:4 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:7 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:3 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:5 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:6 current j:0 j_size:6 current j:1 j_size:6 current j:2 j_size:6 current j:3 j_size:6 current j:4 j_size:6 current j:5 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C37.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C37.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12507%7Ccs00-c2-003-048-e05-.for.491-1869.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.491-1869.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.491-1869.Ar_EST_120301b_c12507%7Ccs00-c2-003-048-e05-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14016%7C000601kaaa001072ht.for.4721-5746.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.4721-5746.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.4721-5746.Ar_EST_120301b_rep_c14016%7C000601kaaa001072ht.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6435%7C000601kaaa001072ht.for.4632-5746.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.4632-5746.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.4632-5746.Ar_EST_120301b_rep_c6435%7C000601kaaa001072ht.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4185%7C000601kaaa001072ht.for.4067-5991.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.4067-5991.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.4067-5991.Ar_EST_120301b_rep_c4185%7C000601kaaa001072ht.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16295%7Ccalcineurin.for.5634-7049.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.5634-7049.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.5634-7049.Ar_EST_120301b_c16295%7Ccalcineurin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12858%7Cran-binding.for.7174-8599.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.7174-8599.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.7174-8599.Ar_EST_120301b_c12858%7Cran-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3327%7Cran-binding.for.6907-8456.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.6907-8456.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.6907-8456.Ar_EST_120301b_c3327%7Cran-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1425%7Cprotein.for.8613-11356.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.8613-11356.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.8613-11356.Ar_EST_120301b_c1425%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6272%7Cprotein.for.9901-11336.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.9901-11336.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.9901-11336.Ar_EST_120301b_rep_c6272%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4396%7Cprotein.for.9311-11267.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.9311-11267.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.9311-11267.Ar_EST_120301b_rep_c4396%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14041%7Cvacuolar.for.9928-10981.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.9928-10981.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.9928-10981.Ar_EST_120301b_rep_c14041%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13503%7Cvacuolar.for.9120-10058.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.9120-10058.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.9120-10058.Ar_EST_120301b_rep_c13503%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c404%7Cvacuolar.for.15625-17344.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.15625-17344.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.15625-17344.Ar_EST_120301b_c404%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18351%7C---NA---.for.17275-18537.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.17275-18537.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.17275-18537.Ar_EST_120301b_rep_c18351%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12162%7Cvacuolar.for.18168-19578.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.18168-19578.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.18168-19578.Ar_EST_120301b_c12162%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2368%7Cfp322549.for.19883-21105.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.19883-21105.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.19883-21105.Ar_EST_120301b_c2368%7Cfp322549.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9387%7Cdiphthamide.for.26530-28351.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.26530-28351.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.26530-28351.Ar_EST_120301b_c9387%7Cdiphthamide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2037%7Cui-ff-if0-abs-g-23-0-.for.28217-29702.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.28217-29702.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.28217-29702.Ar_EST_120301b_c2037%7Cui-ff-if0-abs-g-23-0-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17943%7Cdimethyladenosine.for.29578-30676.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.29578-30676.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.29578-30676.Ar_EST_120301b_c17943%7Cdimethyladenosine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13089%7Cbaac-.for.30820-32167.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.30820-32167.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.30820-32167.Ar_EST_120301b_c13089%7Cbaac-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2504%7Crhodanese.for.31745-33327.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.31745-33327.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.31745-33327.Ar_EST_120301b_c2504%7Crhodanese.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1282%7Cextracellular.for.33470-35788.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33470-35788.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33470-35788.120301b_Contig1282%7Cextracellular.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12161%7Cvacuolar.for.38373-40000.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.38373-40000.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.38373-40000.Ar_EST_120301b_c12161%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig790%7Cvacuolar.for.37386-39178.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.37386-39178.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.37386-39178.120301b_Contig790%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1270%7Cvacuolar.for.39529-40776.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.39529-40776.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.39529-40776.Ar_EST_120301b_c1270%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12489%7Cpenicillin.for.40597-42131.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.40597-42131.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.40597-42131.Ar_EST_120301b_c12489%7Cpenicillin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18123%7Cbeta-lactam.for.41777-43536.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.41777-43536.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.41777-43536.Ar_EST_120301b_c18123%7Cbeta-lactam.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9957%7Cnicotinate-nucleotide.for.43386-44881.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.43386-44881.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.43386-44881.Ar_EST_120301b_c9957%7Cnicotinate-nucleotide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8570%7Cprotein.for.44400-46657.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.44400-46657.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.44400-46657.Ar_EST_120301b_c8570%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17383%7Cdis3-like.for.46455-47626.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.46455-47626.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.46455-47626.Ar_EST_120301b_c17383%7Cdis3-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9772%7Cribonuclease.for.47164-48608.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.47164-48608.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.47164-48608.Ar_EST_120301b_c9772%7Cribonuclease.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c911%7Cww.for.49424-50682.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.49424-50682.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.49424-50682.Ar_EST_120301b_c911%7Cww.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17350%7Cpre-mrna-processing.for.49950-51324.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.49950-51324.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.49950-51324.Ar_EST_120301b_c17350%7Cpre-mrna-processing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3739%7Cmagnesium.for.50593-52588.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.50593-52588.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.50593-52588.Ar_EST_120301b_c3739%7Cmagnesium.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13962%7Chypothetical.for.52735-53994.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.52735-53994.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.52735-53994.Ar_EST_120301b_c13962%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c754%7Cixodes.for.53555-55026.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.53555-55026.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.53555-55026.Ar_EST_120301b_c754%7Cixodes.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12519%7C---NA---.for.53383-54729.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.53383-54729.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.53383-54729.Ar_EST_120301b_c12519%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9860%7Cmitochondrial.for.54379-56046.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.54379-56046.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.54379-56046.Ar_EST_120301b_c9860%7Cmitochondrial.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10748%7Cprotein.for.55764-57467.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.55764-57467.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.55764-57467.Ar_EST_120301b_c10748%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1156%7Cring.for.57207-58362.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.57207-58362.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.57207-58362.120301b_Contig1156%7Cring.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3551%7Cinosine.for.58094-59535.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.58094-59535.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.58094-59535.Ar_EST_120301b_c3551%7Cinosine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13720%7Caig2.for.59895-61233.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.59895-61233.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.59895-61233.Ar_EST_120301b_c13720%7Caig2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3065%7Caig2.for.59386-60746.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.59386-60746.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.59386-60746.Ar_EST_120301b_c3065%7Caig2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13535%7Cagencourt_85392014.for.59437-60831.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.59437-60831.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.59437-60831.Ar_EST_120301b_c13535%7Cagencourt_85392014.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6824%7C26s.for.61052-62221.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.61052-62221.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.61052-62221.Ar_EST_120301b_rep_c6824%7C26s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13614%7Cglucose-6-phosphate.for.63769-64983.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.63769-64983.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.63769-64983.Ar_EST_120301b_rep_c13614%7Cglucose-6-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17330%7Cglucose-6-phosphate.for.63507-64746.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.63507-64746.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.63507-64746.Ar_EST_120301b_c17330%7Cglucose-6-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1053%7Cglucose-6-phosphate.for.62782-64983.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.62782-64983.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.62782-64983.120301b_Contig1053%7Cglucose-6-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14588%7Cglucose-6-phosphate.for.63555-64786.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.63555-64786.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.63555-64786.Ar_EST_120301b_rep_c14588%7Cglucose-6-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig737%7Catp-dependent.for.64484-66186.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.64484-66186.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.64484-66186.120301b_Contig737%7Catp-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15766%7Cuf439.for.68551-69854.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.68551-69854.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.68551-69854.Ar_EST_120301b_c15766%7Cuf439.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12200%7C---NA---.for.70153-71070.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.70153-71070.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.70153-71070.Ar_EST_120301b_rep_c12200%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5884%7Cperoxisome.for.69596-71063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.69596-71063.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.69596-71063.Ar_EST_120301b_rep_c5884%7Cperoxisome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16068%7Cbrainf100763c7.for.70334-71744.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.70334-71744.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.70334-71744.Ar_EST_120301b_c16068%7Cbrainf100763c7.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8312%7C6-phosphogluconolactonase.for.71635-73107.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.71635-73107.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.71635-73107.Ar_EST_120301b_c8312%7C6-phosphogluconolactonase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19105%7C6-phosphogluconolactonase.for.71404-72896.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.71404-72896.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.71404-72896.Ar_EST_120301b_c19105%7C6-phosphogluconolactonase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9286%7Cdual.for.72557-73881.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.72557-73881.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.72557-73881.Ar_EST_120301b_c9286%7Cdual.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1071%7C5.for.73667-75687.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.73667-75687.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.73667-75687.120301b_Contig1071%7C5.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10743%7Cbtb.for.77101-78400.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.77101-78400.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.77101-78400.Ar_EST_120301b_c10743%7Cbtb.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11327%7Cprotein.for.77757-79514.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.77757-79514.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.77757-79514.Ar_EST_120301b_c11327%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15586%7Cphaseolus.for.80442-81906.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.80442-81906.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.80442-81906.Ar_EST_120301b_c15586%7Cphaseolus.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11139%7Csymbiotic.for.83479-84775.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.83479-84775.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.83479-84775.Ar_EST_120301b_c11139%7Csymbiotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig892%7Cregulator.for.87573-89936.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.87573-89936.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.87573-89936.120301b_Contig892%7Cregulator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1263%7C-dimethylguanosine.for.89157-90558.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.89157-90558.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.89157-90558.Ar_EST_120301b_c1263%7C-dimethylguanosine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2059%7Cn.for.89882-91416.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.89882-91416.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.89882-91416.Ar_EST_120301b_c2059%7Cn.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11524%7Clikely.for.90627-91691.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.90627-91691.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.90627-91691.Ar_EST_120301b_c11524%7Clikely.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16790%7Cchp.for.93546-94847.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.93546-94847.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.93546-94847.Ar_EST_120301b_c16790%7Cchp.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18329%7C---NA---.for.94213-95227.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.94213-95227.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.94213-95227.Ar_EST_120301b_rep_c18329%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20520%7Cwd-repeat.for.95947-98462.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.95947-98462.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.95947-98462.Ar_EST_120301b_c20520%7Cwd-repeat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c880%7C---NA---.for.98021-99356.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.98021-99356.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.98021-99356.Ar_EST_120301b_c880%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c173%7Cprotein.for.98627-100080.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.98627-100080.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.98627-100080.Ar_EST_120301b_c173%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19251%7Ceb3rody01bclmk.for.99458-100778.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.99458-100778.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.99458-100778.Ar_EST_120301b_c19251%7Ceb3rody01bclmk.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig723%7Cprotein.for.100478-102532.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.100478-102532.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.100478-102532.120301b_Contig723%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2239%7Cprotein.for.101740-103409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.101740-103409.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.101740-103409.Ar_EST_120301b_c2239%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1305%7Cpredicted.for.103067-104669.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.103067-104669.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.103067-104669.120301b_Contig1305%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig198%7Cphospholipid-binding.for.103629-105872.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.103629-105872.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.103629-105872.120301b_Contig198%7Cphospholipid-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7974%7Cacetyl-.for.108069-109618.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.108069-109618.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.108069-109618.Ar_EST_120301b_c7974%7Cacetyl-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16015%7Ccg17746-.for.109104-110368.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.109104-110368.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.109104-110368.Ar_EST_120301b_rep_c16015%7Ccg17746-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4490%7Cprotein.for.108968-110877.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.108968-110877.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.108968-110877.Ar_EST_120301b_rep_c4490%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4669%7Cprotein.for.108973-110818.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.108973-110818.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.108973-110818.Ar_EST_120301b_rep_c4669%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13688%7Cpredicted.for.109133-110247.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.109133-110247.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.109133-110247.Ar_EST_120301b_rep_c13688%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20276%7Cprotein.for.110214-111786.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.110214-111786.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.110214-111786.Ar_EST_120301b_c20276%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1941%7Catpase.for.111493-112784.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.111493-112784.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.111493-112784.Ar_EST_120301b_c1941%7Catpase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2591%7Cprotein.for.113440-115358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.113440-115358.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.113440-115358.Ar_EST_120301b_c2591%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7163%7Ceukaryotic.for.117437-119179.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117437-119179.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117437-119179.Ar_EST_120301b_rep_c7163%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4765%7Cded1p.for.117970-119554.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117970-119554.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117970-119554.Ar_EST_120301b_rep_c4765%7Cded1p.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19714%7Ceukaryotic.for.117455-118809.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117455-118809.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117455-118809.Ar_EST_120301b_rep_c19714%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10202%7Ceukaryotic.for.117728-119153.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117728-119153.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117728-119153.Ar_EST_120301b_rep_c10202%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11350%7Cmitogen-activated.for.123622-124964.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.123622-124964.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.123622-124964.Ar_EST_120301b_c11350%7Cmitogen-activated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2610%7Caromatic.for.124921-126417.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.124921-126417.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.124921-126417.Ar_EST_120301b_c2610%7Caromatic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11315%7Camino.for.125849-127108.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.125849-127108.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.125849-127108.Ar_EST_120301b_c11315%7Camino.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10428%7Creverse.for.128141-129655.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.128141-129655.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.128141-129655.Ar_EST_120301b_c10428%7Creverse.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8273%7Ctpa_exp%3A.for.126388-131134.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.126388-131134.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.126388-131134.Ar_EST_120301b_c8273%7Ctpa_exp%3A.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:62 now processing 0 total clusters:62 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:62 now processing 0 total clusters:62 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:62 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:62 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:62 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:62 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:52 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:41 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:40 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:48 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:50 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:56 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:41 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:42 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:43 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:33 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084733%7Cgb%7CEFC38422%2E1%7C.for.5543-7040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.5543-7040.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.5543-7040.gi%7C284084733%7Cgb%7CEFC38422%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085167%7Cgb%7CEFC38853%2E1%7C.for.8727-11341.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.8727-11341.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.8727-11341.gi%7C284085167%7Cgb%7CEFC38853%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096132%7Cgb%7CEFC49761%2E1%7C.for.26597-28720.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.26597-28720.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.26597-28720.gi%7C284096132%7Cgb%7CEFC49761%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083629%7Cgb%7CEFC37330%2E1%7C.for.28923-30631.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.28923-30631.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.28923-30631.gi%7C284083629%7Cgb%7CEFC37330%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082445%7Cgb%7CEFC36163%2E1%7C.for.34189-35447.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34189-35447.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34189-35447.gi%7C284082445%7Cgb%7CEFC36163%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087192%7Cgb%7CEFC40863%2E1%7C.for.33683-35435.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33683-35435.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33683-35435.gi%7C284087192%7Cgb%7CEFC40863%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097165%7Cgb%7CEFC50792%2E1%7C.for.33656-35504.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33656-35504.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33656-35504.gi%7C284097165%7Cgb%7CEFC50792%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089173%7Cgb%7CEFC42832%2E1%7C.for.33683-35435.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33683-35435.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33683-35435.gi%7C284089173%7Cgb%7CEFC42832%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081068%7Cgb%7CEFC35282%2E1%7C.for.33665-35102.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33665-35102.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33665-35102.gi%7C284081068%7Cgb%7CEFC35282%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.for.34123-35147.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34123-35147.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34123-35147.gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092309%7Cgb%7CEFC45952%2E1%7C.for.34099-35018.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34099-35018.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34099-35018.gi%7C284092309%7Cgb%7CEFC45952%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094136%7Cgb%7CEFC47771%2E1%7C.for.33572-35501.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33572-35501.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33572-35501.gi%7C284094136%7Cgb%7CEFC47771%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090349%7Cgb%7CEFC44001%2E1%7C.for.33662-35564.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33662-35564.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33662-35564.gi%7C284090349%7Cgb%7CEFC44001%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082443%7Cgb%7CEFC36161%2E1%7C.for.33668-34943.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33668-34943.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33668-34943.gi%7C284082443%7Cgb%7CEFC36161%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085688%7Cgb%7CEFC39370%2E1%7C.for.33617-35537.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33617-35537.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33617-35537.gi%7C284085688%7Cgb%7CEFC39370%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092790%7Cgb%7CEFC46430%2E1%7C.for.33680-35447.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33680-35447.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33680-35447.gi%7C284092790%7Cgb%7CEFC46430%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081402%7Cgb%7CEFC35430%2E1%7C.for.34147-35168.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34147-35168.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34147-35168.gi%7C284081402%7Cgb%7CEFC35430%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083991%7Cgb%7CEFC37688%2E1%7C.for.33563-35435.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33563-35435.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33563-35435.gi%7C284083991%7Cgb%7CEFC37688%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089853%7Cgb%7CEFC43508%2E1%7C.for.33907-35474.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33907-35474.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33907-35474.gi%7C284089853%7Cgb%7CEFC43508%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086220%7Cgb%7CEFC39898%2E1%7C.for.33895-35555.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33895-35555.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33895-35555.gi%7C284086220%7Cgb%7CEFC39898%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089128%7Cgb%7CEFC42787%2E1%7C.for.33871-35477.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33871-35477.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33871-35477.gi%7C284089128%7Cgb%7CEFC42787%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087921%7Cgb%7CEFC41587%2E1%7C.for.34528-35552.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34528-35552.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34528-35552.gi%7C284087921%7Cgb%7CEFC41587%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089145%7Cgb%7CEFC42804%2E1%7C.for.33632-35552.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33632-35552.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33632-35552.gi%7C284089145%7Cgb%7CEFC42804%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087906%7Cgb%7CEFC41573%2E1%7C.for.35089-37517.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.35089-37517.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.35089-37517.gi%7C284087906%7Cgb%7CEFC41573%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086843%7Cgb%7CEFC40517%2E1%7C.for.37402-40913.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.37402-40913.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.37402-40913.gi%7C284086843%7Cgb%7CEFC40517%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093100%7Cgb%7CEFC46739%2E1%7C.for.43418-45108.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.43418-45108.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.43418-45108.gi%7C284093100%7Cgb%7CEFC46739%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091410%7Cgb%7CEFC45057%2E1%7C.for.55767-57924.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.55767-57924.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.55767-57924.gi%7C284091410%7Cgb%7CEFC45057%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091249%7Cgb%7CEFC44897%2E1%7C.for.57245-58185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.57245-58185.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.57245-58185.gi%7C284091249%7Cgb%7CEFC44897%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096886%7Cgb%7CEFC50513%2E1%7C.for.58107-59550.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.58107-59550.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.58107-59550.gi%7C284096886%7Cgb%7CEFC50513%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094945%7Cgb%7CEFC48577%2E1%7C.for.62731-65120.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.62731-65120.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.62731-65120.gi%7C284094945%7Cgb%7CEFC48577%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090158%7Cgb%7CEFC43811%2E1%7C.for.64423-65709.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.64423-65709.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.64423-65709.gi%7C284090158%7Cgb%7CEFC43811%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083325%7Cgb%7CEFC37029%2E1%7C.for.72541-73910.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.72541-73910.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.72541-73910.gi%7C284083325%7Cgb%7CEFC37029%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091054%7Cgb%7CEFC44703%2E1%7C.for.77122-78884.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.77122-78884.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.77122-78884.gi%7C284091054%7Cgb%7CEFC44703%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086426%7Cgb%7CEFC40103%2E1%7C.for.89261-91623.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.89261-91623.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.89261-91623.gi%7C284086426%7Cgb%7CEFC40103%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087562%7Cgb%7CEFC41231%2E1%7C.for.91129-92600.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.91129-92600.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.91129-92600.gi%7C284087562%7Cgb%7CEFC41231%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088507%7Cgb%7CEFC42170%2E1%7C.for.96585-98264.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.96585-98264.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.96585-98264.gi%7C284088507%7Cgb%7CEFC42170%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090894%7Cgb%7CEFC44543%2E1%7C.for.98815-100028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.98815-100028.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.98815-100028.gi%7C284090894%7Cgb%7CEFC44543%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094387%7Cgb%7CEFC48021%2E1%7C.for.101777-103319.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.101777-103319.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.101777-103319.gi%7C284094387%7Cgb%7CEFC48021%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087483%7Cgb%7CEFC41152%2E1%7C.for.109338-110853.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.109338-110853.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.109338-110853.gi%7C284087483%7Cgb%7CEFC41152%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085542%7Cgb%7CEFC39225%2E1%7C.for.109010-110669.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.109010-110669.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.109010-110669.gi%7C284085542%7Cgb%7CEFC39225%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091466%7Cgb%7CEFC45112%2E1%7C.for.114033-115033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.114033-115033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.114033-115033.gi%7C284091466%7Cgb%7CEFC45112%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092518%7Cgb%7CEFC46160%2E1%7C.for.113626-115033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.113626-115033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.113626-115033.gi%7C284092518%7Cgb%7CEFC46160%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092387%7Cgb%7CEFC46029%2E1%7C.for.113569-115033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.113569-115033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.113569-115033.gi%7C284092387%7Cgb%7CEFC46029%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091231%7Cgb%7CEFC44879%2E1%7C.for.113626-115033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.113626-115033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.113626-115033.gi%7C284091231%7Cgb%7CEFC44879%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096309%7Cgb%7CEFC49937%2E1%7C.for.114033-115033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.114033-115033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.114033-115033.gi%7C284096309%7Cgb%7CEFC49937%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090160%7Cgb%7CEFC43813%2E1%7C.for.117468-119525.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117468-119525.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117468-119525.gi%7C284090160%7Cgb%7CEFC43813%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090298%7Cgb%7CEFC43950%2E1%7C.for.120511-122054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120511-122054.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120511-122054.gi%7C284090298%7Cgb%7CEFC43950%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081791%7Cgb%7CEFC35658%2E1%7C.for.120520-121706.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120520-121706.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120520-121706.gi%7C284081791%7Cgb%7CEFC35658%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096459%7Cgb%7CEFC50087%2E1%7C.for.120511-122392.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120511-122392.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120511-122392.gi%7C284096459%7Cgb%7CEFC50087%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093690%7Cgb%7CEFC47327%2E1%7C.for.121060-122404.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.121060-122404.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.121060-122404.gi%7C284093690%7Cgb%7CEFC47327%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095073%7Cgb%7CEFC48705%2E1%7C.for.120520-122392.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120520-122392.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120520-122392.gi%7C284095073%7Cgb%7CEFC48705%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083745%7Cgb%7CEFC37445%2E1%7C.for.120511-122051.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120511-122051.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120511-122051.gi%7C284083745%7Cgb%7CEFC37445%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 16 ...processing 1 of 16 ...processing 2 of 16 ...processing 3 of 16 ...processing 4 of 16 ...processing 5 of 16 ...processing 6 of 16 ...processing 7 of 16 ...processing 8 of 16 ...processing 9 of 16 ...processing 10 of 16 ...processing 11 of 16 ...processing 12 of 16 ...processing 13 of 16 ...processing 14 of 16 ...processing 15 of 16 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 ...processing 0 of 14 ...processing 1 of 14 ...processing 2 of 14 ...processing 3 of 14 ...processing 4 of 14 ...processing 5 of 14 ...processing 6 of 14 ...processing 7 of 14 ...processing 8 of 14 ...processing 9 of 14 ...processing 10 of 14 ...processing 11 of 14 ...processing 12 of 14 ...processing 13 of 14 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:30 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:30 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:30 now processing 0 total clusters:30 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.690-1692.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.690-1692.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.690-1692.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.4266-6856.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.4266-6856.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.4266-6856.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.8812-11160.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.8812-11160.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.8812-11160.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.26729-29502.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.26729-29502.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.26729-29502.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.31019-31967.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.31019-31967.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.31019-31967.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.33669-35588.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.33669-35588.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.33669-35588.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.37601-40713.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.37601-40713.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.37601-40713.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.44599-46457.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.44599-46457.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.44599-46457.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.46654-48408.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.46654-48408.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.46654-48408.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.50792-52388.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.50792-52388.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.50792-52388.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.52747-54826.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.52747-54826.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.52747-54826.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.55963-57724.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.55963-57724.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.55963-57724.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.62930-65986.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.62930-65986.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.62930-65986.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.68744-69654.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.68744-69654.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.68744-69654.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.70533-71547.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.70533-71547.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.70533-71547.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.71592-72907.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.71592-72907.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.71592-72907.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.73866-75487.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.73866-75487.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.73866-75487.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.93745-94651.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.93745-94651.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.93745-94651.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.96146-99156.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.96146-99156.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.96146-99156.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.99657-100578.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.99657-100578.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.99657-100578.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.103266-105672.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.103266-105672.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.103266-105672.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.109167-111586.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.109167-111586.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.109167-111586.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.111692-112584.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.111692-112584.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.111692-112584.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.113639-115158.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.113639-115158.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.113639-115158.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.117606-119325.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.117606-119325.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.117606-119325.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.128340-130208.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.128340-130208.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.128340-130208.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.7106-8399.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.7106-8399.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.7106-8399.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.15824-20905.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.15824-20905.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.15824-20905.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.29122-30476.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.29122-30476.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.29122-30476.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.31942-33158.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.31942-33158.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.31942-33158.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.35288-37317.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.35288-37317.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.35288-37317.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.40796-41931.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.40796-41931.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.40796-41931.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.41976-43336.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.41976-43336.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.41976-43336.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.43585-44908.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.43585-44908.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.43585-44908.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.50149-51215.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.50149-51215.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.50149-51215.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.54578-55855.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.54578-55855.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.54578-55855.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.57406-58213.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.57406-58213.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.57406-58213.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.58293-59350.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.58293-59350.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.58293-59350.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.59574-61033.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.59574-61033.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.59574-61033.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.69790-70870.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.69790-70870.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.69790-70870.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/40_0.72740-73710.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/40_0.72740-73710.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/40_0.72740-73710.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/41_0.77300-79314.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/41_0.77300-79314.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/41_0.77300-79314.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/42_0.80641-84575.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/42_0.80641-84575.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/42_0.80641-84575.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/43_0.87772-92400.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/43_0.87772-92400.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/43_0.87772-92400.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/44_0.100677-103209.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/44_0.100677-103209.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/44_0.100677-103209.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/45_0.120710-122204.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/45_0.120710-122204.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/45_0.120710-122204.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/46_0.125120-126908.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/46_0.125120-126908.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/46_0.125120-126908.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C38 Length: 133197 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:10 current j:0 j_size:10 current j:1 j_size:10 current j:2 j_size:10 current j:3 j_size:10 current j:4 j_size:10 current j:5 j_size:10 current j:6 j_size:10 current j:7 j_size:10 current j:8 j_size:10 current j:9 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C38.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C38.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:3 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15228%7Crheb.for.1-1268.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.1-1268.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.1-1268.Ar_EST_120301b_c15228%7Crheb.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16286%7Cmeloidogyne.for.1526-3096.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.1526-3096.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.1526-3096.Ar_EST_120301b_c16286%7Cmeloidogyne.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8400%7Chypothetical.for.826-2788.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.826-2788.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.826-2788.Ar_EST_120301b_c8400%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16746%7Cmc1-0049t-m146-h12-.for.7019-8207.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.7019-8207.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.7019-8207.Ar_EST_120301b_c16746%7Cmc1-0049t-m146-h12-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14558%7Cdedicator.for.7705-8887.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.7705-8887.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.7705-8887.Ar_EST_120301b_c14558%7Cdedicator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15786%7Cfn885936.for.10647-11929.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.10647-11929.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.10647-11929.Ar_EST_120301b_c15786%7Cfn885936.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1214%7Cphosphate.for.12409-14139.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.12409-14139.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.12409-14139.120301b_Contig1214%7Cphosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10859%7Cphosphate.for.13552-14841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.13552-14841.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.13552-14841.Ar_EST_120301b_c10859%7Cphosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16453%7Cpre-mrna.for.14309-15975.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.14309-15975.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.14309-15975.Ar_EST_120301b_c16453%7Cpre-mrna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7753%7Ctranslation.for.16013-17972.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.16013-17972.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.16013-17972.Ar_EST_120301b_c7753%7Ctranslation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14209%7Cpredicted.for.19709-20930.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.19709-20930.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.19709-20930.Ar_EST_120301b_c14209%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18465%7Cpredicted.for.20179-21432.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.20179-21432.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.20179-21432.Ar_EST_120301b_c18465%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12710%7Cixodes.for.20982-22492.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.20982-22492.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.20982-22492.Ar_EST_120301b_c12710%7Cixodes.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16149%7Cactin.for.22395-23718.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.22395-23718.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.22395-23718.Ar_EST_120301b_c16149%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3321%7Cfy454559.for.26643-28278.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.26643-28278.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.26643-28278.Ar_EST_120301b_c3321%7Cfy454559.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1245%7Cregulator.for.28414-30245.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.28414-30245.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.28414-30245.120301b_Contig1245%7Cregulator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8350%7Cglycoside.for.30495-32566.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.30495-32566.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.30495-32566.Ar_EST_120301b_c8350%7Cglycoside.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18494%7Cdiacylglycerol.for.36778-38537.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.36778-38537.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.36778-38537.Ar_EST_120301b_c18494%7Cdiacylglycerol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5917%7Cglycosyl.for.40075-41960.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.40075-41960.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.40075-41960.Ar_EST_120301b_rep_c5917%7Cglycosyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4688%7Cglycosyl.for.39920-41840.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.39920-41840.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.39920-41840.Ar_EST_120301b_rep_c4688%7Cglycosyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8876%7Cprotein.for.42940-44630.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.42940-44630.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.42940-44630.Ar_EST_120301b_c8876%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12607%7Ccarboxypeptidase.for.44948-46147.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.44948-46147.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.44948-46147.Ar_EST_120301b_c12607%7Ccarboxypeptidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15694%7Cfy863259.for.47931-49182.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.47931-49182.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.47931-49182.Ar_EST_120301b_c15694%7Cfy863259.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6729%7Chypothetical.for.48968-50536.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.48968-50536.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.48968-50536.Ar_EST_120301b_rep_c6729%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6105%7Cmusra09tf.for.49359-50604.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.49359-50604.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.49359-50604.Ar_EST_120301b_rep_c6105%7Cmusra09tf.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig360%7Cendonuclease.for.48954-50714.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.48954-50714.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.48954-50714.120301b_Contig360%7Cendonuclease.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1875%7Cregulator.for.50892-52717.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.50892-52717.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.50892-52717.Ar_EST_120301b_c1875%7Cregulator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8971%7Cgpi-anchored.for.52653-54255.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.52653-54255.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.52653-54255.Ar_EST_120301b_c8971%7Cgpi-anchored.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1204%7Cantigenic.for.54431-55800.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.54431-55800.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.54431-55800.120301b_Contig1204%7Cantigenic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2993%7Cala-interacting.for.55690-57429.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.55690-57429.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.55690-57429.Ar_EST_120301b_c2993%7Cala-interacting.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17158%7CCCFBM4D02.for.57563-58850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.57563-58850.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.57563-58850.Ar_EST_120301b_c17158%7CCCFBM4D02.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3003%7Cserine.for.61670-63495.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.61670-63495.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.61670-63495.Ar_EST_120301b_c3003%7Cserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8793%7Ckinase.for.62456-63890.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.62456-63890.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.62456-63890.Ar_EST_120301b_c8793%7Ckinase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c181%7Cmannose-p-dolichol.for.70397-71993.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.70397-71993.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.70397-71993.Ar_EST_120301b_c181%7Cmannose-p-dolichol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17865%7Cmannose-p-dolichol.for.70718-71966.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.70718-71966.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.70718-71966.Ar_EST_120301b_c17865%7Cmannose-p-dolichol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1474%7Cregulator.for.77795-79191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.77795-79191.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.77795-79191.Ar_EST_120301b_c1474%7Cregulator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16328%7Cphytanoyl-.for.80693-82050.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.80693-82050.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.80693-82050.Ar_EST_120301b_c16328%7Cphytanoyl-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14940%7C---NA---.for.93035-94410.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.93035-94410.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.93035-94410.Ar_EST_120301b_c14940%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3508%7Crhogef.for.91581-93280.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.91581-93280.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.91581-93280.Ar_EST_120301b_c3508%7Crhogef.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1078%7Cpleckstrin.for.91910-94036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.91910-94036.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.91910-94036.Ar_EST_120301b_c1078%7Cpleckstrin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12304%7Ccls_c.for.93028-94066.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.93028-94066.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.93028-94066.Ar_EST_120301b_c12304%7Ccls_c.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13759%7Cfoaa-.for.104296-105162.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.104296-105162.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.104296-105162.Ar_EST_120301b_c13759%7Cfoaa-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9555%7Cubiquitin.for.104630-106307.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.104630-106307.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.104630-106307.Ar_EST_120301b_c9555%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19079%7Cubiquitin.for.107333-108411.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.107333-108411.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.107333-108411.Ar_EST_120301b_c19079%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8071%7Cubiquitin.for.106552-108586.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.106552-108586.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.106552-108586.Ar_EST_120301b_c8071%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9823%7CCF0007142.for.116219-117319.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.116219-117319.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.116219-117319.Ar_EST_120301b_c9823%7CCF0007142.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17572%7C---NA---.for.117192-118387.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.117192-118387.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.117192-118387.Ar_EST_120301b_c17572%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20039%7C60s.for.118952-120109.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120109.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120109.Ar_EST_120301b_rep_c20039%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9805%7C0246832.for.119506-120448.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119506-120448.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119506-120448.Ar_EST_120301b_rep_c9805%7C0246832.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11483%7Cisoform.for.119403-120493.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119403-120493.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119403-120493.Ar_EST_120301b_rep_c11483%7Cisoform.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5984%7Cribosomal.for.118952-120346.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120346.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120346.Ar_EST_120301b_rep_c5984%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5385%7Cribosomal.for.118966-120352.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118966-120352.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118966-120352.Ar_EST_120301b_rep_c5385%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20112%7C60s.for.119424-120420.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119424-120420.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119424-120420.Ar_EST_120301b_rep_c20112%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1975%7Cribosomal.for.118868-120525.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118868-120525.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118868-120525.Ar_EST_120301b_c1975%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20290%7Cribosomal.for.118952-120343.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120343.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120343.Ar_EST_120301b_rep_c20290%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20093%7C60s.for.118952-120295.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120295.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120295.Ar_EST_120301b_rep_c20093%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5245%7Cribosomal.for.118952-120380.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120380.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120380.Ar_EST_120301b_rep_c5245%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19529%7Cppe00006243.for.119535-120422.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119535-120422.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119535-120422.Ar_EST_120301b_rep_c19529%7Cppe00006243.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig972%7Ctetratricopeptide.for.119793-121397.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119793-121397.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119793-121397.120301b_Contig972%7Ctetratricopeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15821%7Chypothetical.for.125074-126487.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.125074-126487.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.125074-126487.Ar_EST_120301b_c15821%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7993%7Chypothetical.for.128465-130544.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.128465-130544.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.128465-130544.Ar_EST_120301b_c7993%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6167%7Crho.for.130038-131215.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.130038-131215.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.130038-131215.Ar_EST_120301b_rep_c6167%7Crho.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4353%7Cras-related.for.129829-131313.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.129829-131313.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.129829-131313.Ar_EST_120301b_rep_c4353%7Cras-related.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:41 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 ...processing 0 of 2 ...processing 1 of 2 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:37 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:23 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:36 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:52 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:42 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:32 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:43 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:44 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:26 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095853%7Cgb%7CEFC49482%2E1%7C.for.12016-13166.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.12016-13166.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.12016-13166.gi%7C284095853%7Cgb%7CEFC49482%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087172%7Cgb%7CEFC40843%2E1%7C.for.16022-17814.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.16022-17814.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.16022-17814.gi%7C284087172%7Cgb%7CEFC40843%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095198%7Cgb%7CEFC48829%2E1%7C.for.30355-32672.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.30355-32672.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.30355-32672.gi%7C284095198%7Cgb%7CEFC48829%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096098%7Cgb%7CEFC49727%2E1%7C.for.44261-46268.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.44261-46268.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.44261-46268.gi%7C284096098%7Cgb%7CEFC49727%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094374%7Cgb%7CEFC48008%2E1%7C.for.55695-57505.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.55695-57505.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.55695-57505.gi%7C284094374%7Cgb%7CEFC48008%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082829%7Cgb%7CEFC36540%2E1%7C.for.59265-61230.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.59265-61230.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.59265-61230.gi%7C284082829%7Cgb%7CEFC36540%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095559%7Cgb%7CEFC49189%2E1%7C.for.59268-60843.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.59268-60843.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.59268-60843.gi%7C284095559%7Cgb%7CEFC49189%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096101%7Cgb%7CEFC49730%2E1%7C.for.67324-68455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.67324-68455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.67324-68455.gi%7C284096101%7Cgb%7CEFC49730%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090298%7Cgb%7CEFC43950%2E1%7C.for.69162-70660.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69162-70660.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69162-70660.gi%7C284090298%7Cgb%7CEFC43950%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096572%7Cgb%7CEFC50200%2E1%7C.for.69582-70540.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69582-70540.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69582-70540.gi%7C284096572%7Cgb%7CEFC50200%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084962%7Cgb%7CEFC38649%2E1%7C.for.69174-70630.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69174-70630.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69174-70630.gi%7C284084962%7Cgb%7CEFC38649%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081791%7Cgb%7CEFC35658%2E1%7C.for.69162-70354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69162-70354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69162-70354.gi%7C284081791%7Cgb%7CEFC35658%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096459%7Cgb%7CEFC50087%2E1%7C.for.69168-70963.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69168-70963.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69168-70963.gi%7C284096459%7Cgb%7CEFC50087%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093690%7Cgb%7CEFC47327%2E1%7C.for.69654-70660.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69654-70660.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69654-70660.gi%7C284093690%7Cgb%7CEFC47327%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095073%7Cgb%7CEFC48705%2E1%7C.for.69159-70960.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69159-70960.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69159-70960.gi%7C284095073%7Cgb%7CEFC48705%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083745%7Cgb%7CEFC37445%2E1%7C.for.69168-70654.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69168-70654.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69168-70654.gi%7C284083745%7Cgb%7CEFC37445%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097133%7Cgb%7CEFC50760%2E1%7C.for.70362-71972.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.70362-71972.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.70362-71972.gi%7C284097133%7Cgb%7CEFC50760%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095573%7Cgb%7CEFC49203%2E1%7C.for.75345-76793.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75345-76793.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75345-76793.gi%7C284095573%7Cgb%7CEFC49203%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085812%7Cgb%7CEFC39493%2E1%7C.for.75339-76796.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76796.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76796.gi%7C284085812%7Cgb%7CEFC39493%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092862%7Cgb%7CEFC46502%2E1%7C.for.75402-76799.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75402-76799.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75402-76799.gi%7C284092862%7Cgb%7CEFC46502%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090460%7Cgb%7CEFC44112%2E1%7C.for.75339-76805.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76805.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76805.gi%7C284090460%7Cgb%7CEFC44112%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089636%7Cgb%7CEFC43292%2E1%7C.for.75405-76805.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75405-76805.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75405-76805.gi%7C284089636%7Cgb%7CEFC43292%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090872%7Cgb%7CEFC44522%2E1%7C.for.75342-76799.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75342-76799.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75342-76799.gi%7C284090872%7Cgb%7CEFC44522%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081627%7Cgb%7CEFC35562%2E1%7C.for.75684-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75684-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75684-76808.gi%7C284081627%7Cgb%7CEFC35562%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093011%7Cgb%7CEFC46651%2E1%7C.for.75405-76805.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75405-76805.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75405-76805.gi%7C284093011%7Cgb%7CEFC46651%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091565%7Cgb%7CEFC45211%2E1%7C.for.75429-76796.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75429-76796.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75429-76796.gi%7C284091565%7Cgb%7CEFC45211%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085749%7Cgb%7CEFC39431%2E1%7C.for.75537-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75537-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75537-76808.gi%7C284085749%7Cgb%7CEFC39431%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090598%7Cgb%7CEFC44249%2E1%7C.for.75339-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76808.gi%7C284090598%7Cgb%7CEFC44249%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095689%7Cgb%7CEFC49319%2E1%7C.for.75414-76817.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75414-76817.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75414-76817.gi%7C284095689%7Cgb%7CEFC49319%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088013%7Cgb%7CEFC41679%2E1%7C.for.75339-76799.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76799.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76799.gi%7C284088013%7Cgb%7CEFC41679%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092337%7Cgb%7CEFC45979%2E1%7C.for.75402-76799.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75402-76799.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75402-76799.gi%7C284092337%7Cgb%7CEFC45979%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093381%7Cgb%7CEFC47019%2E1%7C.for.75408-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75408-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75408-76808.gi%7C284093381%7Cgb%7CEFC47019%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087750%7Cgb%7CEFC41418%2E1%7C.for.75339-76796.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76796.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76796.gi%7C284087750%7Cgb%7CEFC41418%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097171%7Cgb%7CEFC50798%2E1%7C.for.75360-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75360-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75360-76808.gi%7C284097171%7Cgb%7CEFC50798%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084253%7Cgb%7CEFC37948%2E1%7C.for.75390-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75390-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75390-76808.gi%7C284084253%7Cgb%7CEFC37948%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096980%7Cgb%7CEFC50607%2E1%7C.for.75396-76726.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75396-76726.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75396-76726.gi%7C284096980%7Cgb%7CEFC50607%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082060%7Cgb%7CEFC35846%2E1%7C.for.75588-76805.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75588-76805.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75588-76805.gi%7C284082060%7Cgb%7CEFC35846%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089921%7Cgb%7CEFC43576%2E1%7C.for.75366-76534.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75366-76534.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75366-76534.gi%7C284089921%7Cgb%7CEFC43576%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087888%7Cgb%7CEFC41555%2E1%7C.for.75339-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76808.gi%7C284087888%7Cgb%7CEFC41555%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090604%7Cgb%7CEFC44255%2E1%7C.for.75381-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75381-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75381-76808.gi%7C284090604%7Cgb%7CEFC44255%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093718%7Cgb%7CEFC47355%2E1%7C.for.75402-76802.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75402-76802.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75402-76802.gi%7C284093718%7Cgb%7CEFC47355%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081289%7Cgb%7CEFC35375%2E1%7C.for.75366-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75366-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75366-76808.gi%7C284081289%7Cgb%7CEFC35375%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084867%7Cgb%7CEFC38555%2E1%7C.for.75381-76805.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75381-76805.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75381-76805.gi%7C284084867%7Cgb%7CEFC38555%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092603%7Cgb%7CEFC46244%2E1%7C.for.75390-76805.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75390-76805.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75390-76805.gi%7C284092603%7Cgb%7CEFC46244%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094751%7Cgb%7CEFC48384%2E1%7C.for.75345-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75345-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75345-76808.gi%7C284094751%7Cgb%7CEFC48384%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.82526-86036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86036.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86036.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.for.83467-86042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83467-86042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83467-86042.gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095844%7Cgb%7CEFC49473%2E1%7C.for.82526-86051.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86051.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86051.gi%7C284095844%7Cgb%7CEFC49473%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.for.82478-86054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82478-86054.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82478-86054.gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.for.82526-86054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86054.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86054.gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.for.83596-86024.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83596-86024.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83596-86024.gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085992%7Cgb%7CEFC39672%2E1%7C.for.82526-86078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86078.gi%7C284085992%7Cgb%7CEFC39672%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095843%7Cgb%7CEFC49472%2E1%7C.for.83551-86042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83551-86042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83551-86042.gi%7C284095843%7Cgb%7CEFC49472%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.for.83554-86039.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86039.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86039.gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.for.83617-86012.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83617-86012.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83617-86012.gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085851%7Cgb%7CEFC39532%2E1%7C.for.83590-87575.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-87575.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-87575.gi%7C284085851%7Cgb%7CEFC39532%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088147%7Cgb%7CEFC41812%2E1%7C.for.83623-86063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86063.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86063.gi%7C284088147%7Cgb%7CEFC41812%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.for.83623-85985.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-85985.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-85985.gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.for.83554-86027.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86027.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86027.gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.for.82526-87245.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-87245.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-87245.gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084257%7Cgb%7CEFC37951%2E1%7C.for.82526-86387.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86387.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86387.gi%7C284084257%7Cgb%7CEFC37951%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.for.82526-86054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86054.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86054.gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090138%7Cgb%7CEFC43791%2E1%7C.for.82478-86126.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82478-86126.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82478-86126.gi%7C284090138%7Cgb%7CEFC43791%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.for.83596-86042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83596-86042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83596-86042.gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.for.83551-86036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83551-86036.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83551-86036.gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.for.83551-87245.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83551-87245.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83551-87245.gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082687%7Cgb%7CEFC36400%2E1%7C.for.82517-86612.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82517-86612.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82517-86612.gi%7C284082687%7Cgb%7CEFC36400%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086383%7Cgb%7CEFC40060%2E1%7C.for.83623-86051.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86051.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86051.gi%7C284086383%7Cgb%7CEFC40060%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.for.83566-86015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83566-86015.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83566-86015.gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097003%7Cgb%7CEFC50630%2E1%7C.for.83554-86042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86042.gi%7C284097003%7Cgb%7CEFC50630%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.for.83554-86039.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86039.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86039.gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.for.83590-86015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-86015.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-86015.gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.for.82517-86054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82517-86054.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82517-86054.gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082747%7Cgb%7CEFC36459%2E1%7C.for.83590-86033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-86033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-86033.gi%7C284082747%7Cgb%7CEFC36459%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.for.82526-87245.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-87245.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-87245.gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.for.82523-86054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82523-86054.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82523-86054.gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092908%7Cgb%7CEFC46548%2E1%7C.for.82526-86030.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86030.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86030.gi%7C284092908%7Cgb%7CEFC46548%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.for.82478-86039.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82478-86039.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82478-86039.gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.for.82526-86042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86042.gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.for.82526-86060.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86060.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86060.gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094023%7Cgb%7CEFC47658%2E1%7C.for.82514-86093.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82514-86093.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82514-86093.gi%7C284094023%7Cgb%7CEFC47658%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082395%7Cgb%7CEFC36118%2E1%7C.for.82523-86060.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82523-86060.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82523-86060.gi%7C284082395%7Cgb%7CEFC36118%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096530%7Cgb%7CEFC50158%2E1%7C.for.83623-86396.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86396.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86396.gi%7C284096530%7Cgb%7CEFC50158%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.for.83623-86042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86042.gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.for.83659-86015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83659-86015.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83659-86015.gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090154%7Cgb%7CEFC43807%2E1%7C.for.82526-86081.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86081.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86081.gi%7C284090154%7Cgb%7CEFC43807%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083343%7Cgb%7CEFC37047%2E1%7C.for.82517-86024.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82517-86024.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82517-86024.gi%7C284083343%7Cgb%7CEFC37047%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086531%7Cgb%7CEFC40207%2E1%7C.for.83572-86042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83572-86042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83572-86042.gi%7C284086531%7Cgb%7CEFC40207%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.for.83554-86018.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86018.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86018.gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090243%7Cgb%7CEFC43896%2E1%7C.for.82526-86042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86042.gi%7C284090243%7Cgb%7CEFC43896%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.for.82526-86492.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86492.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86492.gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.for.82517-87083.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82517-87083.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82517-87083.gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092203%7Cgb%7CEFC45846%2E1%7C.for.82526-86054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86054.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86054.gi%7C284092203%7Cgb%7CEFC45846%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.for.83593-86075.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83593-86075.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83593-86075.gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.for.83596-86102.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83596-86102.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83596-86102.gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088463%7Cgb%7CEFC42126%2E1%7C.for.83623-86024.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86024.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86024.gi%7C284088463%7Cgb%7CEFC42126%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086579%7Cgb%7CEFC40255%2E1%7C.for.83554-86042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86042.gi%7C284086579%7Cgb%7CEFC40255%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096176%7Cgb%7CEFC49805%2E1%7C.for.82526-86360.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86360.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86360.gi%7C284096176%7Cgb%7CEFC49805%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.for.83590-86036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-86036.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-86036.gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080837%7Cgb%7CEFC35205%2E1%7C.for.83641-86126.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83641-86126.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83641-86126.gi%7C284080837%7Cgb%7CEFC35205%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087676%7Cgb%7CEFC41344%2E1%7C.for.82523-86432.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82523-86432.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82523-86432.gi%7C284087676%7Cgb%7CEFC41344%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087857%7Cgb%7CEFC41524%2E1%7C.for.82526-86021.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86021.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86021.gi%7C284087857%7Cgb%7CEFC41524%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080808%7Cgb%7CEFC35194%2E1%7C.for.83599-86012.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83599-86012.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83599-86012.gi%7C284080808%7Cgb%7CEFC35194%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.for.83590-85994.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-85994.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-85994.gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095310%7Cgb%7CEFC48941%2E1%7C.for.101030-102665.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.101030-102665.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.101030-102665.gi%7C284095310%7Cgb%7CEFC48941%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084277%7Cgb%7CEFC37971%2E1%7C.for.104855-109073.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.104855-109073.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.104855-109073.gi%7C284084277%7Cgb%7CEFC37971%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.for.109610-110919.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109610-110919.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109610-110919.gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.for.109649-110919.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109649-110919.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109649-110919.gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094669%7Cgb%7CEFC48302%2E1%7C.for.109652-110919.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109652-110919.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109652-110919.gi%7C284094669%7Cgb%7CEFC48302%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.for.109634-110913.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109634-110913.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109634-110913.gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.for.109628-110919.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109628-110919.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109628-110919.gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.for.109610-111339.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109610-111339.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109610-111339.gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.for.109616-110967.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109616-110967.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109616-110967.gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.for.109619-111045.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109619-111045.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109619-111045.gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097002%7Cgb%7CEFC50629%2E1%7C.for.109652-110967.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109652-110967.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109652-110967.gi%7C284097002%7Cgb%7CEFC50629%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.for.109637-110937.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109637-110937.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109637-110937.gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.for.109331-110925.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109331-110925.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109331-110925.gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092908%7Cgb%7CEFC46548%2E1%7C.for.109604-111387.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109604-111387.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109604-111387.gi%7C284092908%7Cgb%7CEFC46548%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.for.109616-110988.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109616-110988.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109616-110988.gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.for.109958-110916.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109958-110916.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109958-110916.gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.for.109610-110916.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109610-110916.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109610-110916.gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.for.109541-110931.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109541-110931.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109541-110931.gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.for.109619-114930.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109619-114930.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109619-114930.gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088433%7Cgb%7CEFC42096%2E1%7C.for.109649-111183.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109649-111183.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109649-111183.gi%7C284088433%7Cgb%7CEFC42096%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096508%7Cgb%7CEFC50136%2E1%7C.for.109643-114861.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109643-114861.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109643-114861.gi%7C284096508%7Cgb%7CEFC50136%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086579%7Cgb%7CEFC40255%2E1%7C.for.109637-114897.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109637-114897.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109637-114897.gi%7C284086579%7Cgb%7CEFC40255%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085441%7Cgb%7CEFC39125%2E1%7C.for.119173-120386.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119173-120386.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119173-120386.gi%7C284085441%7Cgb%7CEFC39125%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090460%7Cgb%7CEFC44112%2E1%7C.for.129852-131111.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.129852-131111.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.129852-131111.gi%7C284090460%7Cgb%7CEFC44112%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091118%7Cgb%7CEFC44766%2E1%7C.for.129888-130990.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.129888-130990.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.129888-130990.gi%7C284091118%7Cgb%7CEFC44766%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 25 ...processing 1 of 25 ...processing 2 of 25 ...processing 3 of 25 ...processing 4 of 25 ...processing 5 of 25 ...processing 6 of 25 ...processing 7 of 25 ...processing 8 of 25 ...processing 9 of 25 ...processing 10 of 25 ...processing 11 of 25 ...processing 12 of 25 ...processing 13 of 25 ...processing 14 of 25 ...processing 15 of 25 ...processing 16 of 25 ...processing 17 of 25 ...processing 18 of 25 ...processing 19 of 25 ...processing 20 of 25 ...processing 21 of 25 ...processing 22 of 25 ...processing 23 of 25 ...processing 24 of 25 total clusters:14 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 21 ...processing 1 of 21 ...processing 2 of 21 ...processing 3 of 21 ...processing 4 of 21 ...processing 5 of 21 ...processing 6 of 21 ...processing 7 of 21 ...processing 8 of 21 ...processing 9 of 21 ...processing 10 of 21 ...processing 11 of 21 ...processing 12 of 21 ...processing 13 of 21 ...processing 14 of 21 ...processing 15 of 21 ...processing 16 of 21 ...processing 17 of 21 ...processing 18 of 21 ...processing 19 of 21 ...processing 20 of 21 ...trimming the rest total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 22 ...processing 1 of 22 ...processing 2 of 22 ...processing 3 of 22 ...processing 4 of 22 ...processing 5 of 22 ...processing 6 of 22 ...processing 7 of 22 ...processing 8 of 22 ...processing 9 of 22 ...processing 10 of 22 ...processing 11 of 22 ...processing 12 of 22 ...processing 13 of 22 ...processing 14 of 22 ...processing 15 of 22 ...processing 16 of 22 ...processing 17 of 22 ...processing 18 of 22 ...processing 19 of 22 ...processing 20 of 22 ...processing 21 of 22 total clusters:12 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 20 ...processing 1 of 20 ...processing 2 of 20 ...processing 3 of 20 ...processing 4 of 20 ...processing 5 of 20 ...processing 6 of 20 ...processing 7 of 20 ...processing 8 of 20 ...processing 9 of 20 ...processing 10 of 20 ...processing 11 of 20 ...processing 12 of 20 ...processing 13 of 20 ...processing 14 of 20 ...processing 15 of 20 ...processing 16 of 20 ...processing 17 of 20 ...processing 18 of 20 ...processing 19 of 20 ...trimming the rest ...processing 0 of 10 ...processing 1 of 10 ...processing 2 of 10 ...processing 3 of 10 ...processing 4 of 10 ...processing 5 of 10 ...processing 6 of 10 ...processing 7 of 10 ...processing 8 of 10 ...processing 9 of 10 total clusters:23 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.0-1068.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.0-1068.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.0-1068.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.14508-15775.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.14508-15775.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.14508-15775.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.26842-28089.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.26842-28089.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.26842-28089.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.30554-32472.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.30554-32472.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.30554-32472.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.36905-38337.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.36905-38337.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.36905-38337.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.40119-41760.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.40119-41760.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.40119-41760.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.49167-50404.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.49167-50404.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.49167-50404.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.51091-52517.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.51091-52517.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.51091-52517.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.52826-55600.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.52826-55600.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.52826-55600.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.61869-63690.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.61869-63690.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.61869-63690.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.77994-78991.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.77994-78991.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.77994-78991.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.80892-81850.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.80892-81850.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.80892-81850.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.82716-86883.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.82716-86883.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.82716-86883.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.91757-94210.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.91757-94210.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.91757-94210.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.101229-102851.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.101229-102851.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.101229-102851.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.104829-108873.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.104829-108873.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.104829-108873.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.109809-114661.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.109809-114661.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.109809-114661.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.116418-117119.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.116418-117119.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.116418-117119.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.119146-121197.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.119146-121197.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.119146-121197.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.125273-126287.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.125273-126287.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.125273-126287.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.1025-2898.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.1025-2898.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.1025-2898.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.7134-8687.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.7134-8687.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.7134-8687.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.10846-11729.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.10846-11729.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.10846-11729.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.12608-14641.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.12608-14641.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.12608-14641.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.16212-17785.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.16212-17785.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.16212-17785.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.19908-23518.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.19908-23518.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.19908-23518.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.28613-30052.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.28613-30052.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.28613-30052.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.43139-44430.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.43139-44430.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.43139-44430.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.44460-46068.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.44460-46068.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.44460-46068.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.55889-57367.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.55889-57367.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.55889-57367.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.57762-58650.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.57762-58650.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.57762-58650.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.67523-68255.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.67523-68255.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.67523-68255.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.69358-71793.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.69358-71793.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.69358-71793.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.75544-76608.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.75544-76608.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.75544-76608.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.117391-118195.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.117391-118195.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.117391-118195.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.128664-131113.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.128664-131113.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.128664-131113.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C39 Length: 100272 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:4 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:1 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:3 current j:0 j_size:3 current j:1 j_size:3 current j:2 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C39.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C39.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:13 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13753%7Czinc.for.1-924.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.1-924.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.1-924.Ar_EST_120301b_c13753%7Czinc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19066%7Chypothetical.for.789-2082.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.789-2082.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.789-2082.Ar_EST_120301b_c19066%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig218%7Cnexus.for.334-2773.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.334-2773.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.334-2773.120301b_Contig218%7Cnexus.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14313%7C---NA---.for.2604-4481.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.2604-4481.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.2604-4481.Ar_EST_120301b_c14313%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19310%7C1351925.for.2914-4175.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.2914-4175.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.2914-4175.Ar_EST_120301b_c19310%7C1351925.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12834%7C1351925.for.2793-4091.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.2793-4091.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.2793-4091.Ar_EST_120301b_c12834%7C1351925.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16703%7C454.for.2095-3484.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.2095-3484.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.2095-3484.Ar_EST_120301b_c16703%7C454.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18347%7Cribosomal.for.5241-6295.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.5241-6295.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.5241-6295.Ar_EST_120301b_rep_c18347%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12088%7Cnucleosome.for.4895-6049.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.4895-6049.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.4895-6049.Ar_EST_120301b_rep_c12088%7Cnucleosome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18245%7Ceukaryotic.for.4895-5920.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.4895-5920.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.4895-5920.Ar_EST_120301b_rep_c18245%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3465%7Cexonuclease.for.6573-8065.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.6573-8065.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.6573-8065.Ar_EST_120301b_c3465%7Cexonuclease.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4109%7Cactin.for.8275-9534.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8275-9534.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8275-9534.Ar_EST_120301b_rep_c4109%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5621%7Cactin.for.8469-9548.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8469-9548.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8469-9548.Ar_EST_120301b_rep_c5621%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19797%7Cactin.for.8462-9544.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8462-9544.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8462-9544.Ar_EST_120301b_rep_c19797%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6543%7Cactin.for.8276-9534.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8276-9534.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8276-9534.Ar_EST_120301b_rep_c6543%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17737%7Cactin.for.8403-9496.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8403-9496.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8403-9496.Ar_EST_120301b_rep_c17737%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8147%7Ccofilin.for.8464-9533.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8464-9533.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8464-9533.Ar_EST_120301b_rep_c8147%7Ccofilin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20113%7Cactin-depolymerizing.for.8505-9548.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8505-9548.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8505-9548.Ar_EST_120301b_rep_c20113%7Cactin-depolymerizing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7396%7Cuncharacterized.for.9271-10874.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.9271-10874.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.9271-10874.Ar_EST_120301b_rep_c7396%7Cuncharacterized.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12055%7Ccg18418-pa.for.10263-11531.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.10263-11531.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.10263-11531.Ar_EST_120301b_c12055%7Ccg18418-pa.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4634%7Cprotein.for.11895-13364.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.11895-13364.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.11895-13364.Ar_EST_120301b_rep_c4634%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1801%7Ctumor.for.11297-12731.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.11297-12731.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.11297-12731.Ar_EST_120301b_c1801%7Ctumor.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13099%7Ctumor.for.11414-12710.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.11414-12710.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.11414-12710.Ar_EST_120301b_c13099%7Ctumor.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13018%7Ctumor.for.11957-13023.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.11957-13023.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.11957-13023.Ar_EST_120301b_rep_c13018%7Ctumor.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10348%7Cnb405-g03.for.14482-15853.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.14482-15853.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.14482-15853.Ar_EST_120301b_c10348%7Cnb405-g03.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8849%7Carp2.for.20682-21692.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.20682-21692.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.20682-21692.Ar_EST_120301b_c8849%7Carp2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4195%7Cactin.for.20151-21811.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.20151-21811.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.20151-21811.Ar_EST_120301b_rep_c4195%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12311%7Cc.for.29373-30667.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.29373-30667.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.29373-30667.Ar_EST_120301b_c12311%7Cc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12329%7Ctyrosine.for.32236-33500.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.32236-33500.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.32236-33500.Ar_EST_120301b_c12329%7Ctyrosine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7147%7Cprotein.for.34104-36543.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.34104-36543.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.34104-36543.Ar_EST_120301b_rep_c7147%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13197%7Cprotein.for.33828-35252.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33828-35252.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33828-35252.Ar_EST_120301b_rep_c13197%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12720%7Cprotein.for.35786-37179.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.35786-37179.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.35786-37179.Ar_EST_120301b_c12720%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16530%7Cprotein.for.37347-38707.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.37347-38707.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.37347-38707.Ar_EST_120301b_c16530%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6488%7Cperoxisomal.for.38875-40593.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.38875-40593.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.38875-40593.Ar_EST_120301b_rep_c6488%7Cperoxisomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3260%7Camp-dependent.for.38868-40952.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.38868-40952.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.38868-40952.Ar_EST_120301b_c3260%7Camp-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3131%7Ccarboxypeptidase.for.40763-42063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.40763-42063.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.40763-42063.Ar_EST_120301b_c3131%7Ccarboxypeptidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2100%7Ccarboxypeptidase.for.41304-43144.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.41304-43144.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.41304-43144.Ar_EST_120301b_c2100%7Ccarboxypeptidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c98%7Ckinesin.for.44885-47294.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.44885-47294.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.44885-47294.Ar_EST_120301b_c98%7Ckinesin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18997%7Cchromosome.for.46355-47842.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.46355-47842.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.46355-47842.Ar_EST_120301b_c18997%7Cchromosome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3674%7Cviral.for.47108-49237.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.47108-49237.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.47108-49237.Ar_EST_120301b_c3674%7Cviral.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15127%7Cankyrin.for.50570-51694.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.50570-51694.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.50570-51694.Ar_EST_120301b_c15127%7Cankyrin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c40%7C2-oxoglutarate.for.51287-55022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.51287-55022.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.51287-55022.Ar_EST_120301b_c40%7C2-oxoglutarate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15498%7Cheat.for.55491-57055.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.55491-57055.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.55491-57055.Ar_EST_120301b_c15498%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18376%7Cheat.for.56061-57285.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.56061-57285.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.56061-57285.Ar_EST_120301b_rep_c18376%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10445%7Cacid.for.57635-59202.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.57635-59202.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.57635-59202.Ar_EST_120301b_c10445%7Cacid.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6230%7Cproteasome.for.67388-68889.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.67388-68889.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.67388-68889.Ar_EST_120301b_rep_c6230%7Cproteasome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6671%7Cproteasome.for.67396-68889.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.67396-68889.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.67396-68889.Ar_EST_120301b_rep_c6671%7Cproteasome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18287%7Cvirginia_state_96561_2_lrc14307.for.70151-71575.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.70151-71575.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.70151-71575.Ar_EST_120301b_c18287%7Cvirginia_state_96561_2_lrc14307.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c484%7Cring.for.75125-76585.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.75125-76585.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.75125-76585.Ar_EST_120301b_c484%7Cring.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c447%7Cring.for.75210-76875.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.75210-76875.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.75210-76875.Ar_EST_120301b_c447%7Cring.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9829%7Cap-3.for.76139-77892.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.76139-77892.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.76139-77892.Ar_EST_120301b_c9829%7Cap-3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3233%7Cdelta.for.77329-79597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.77329-79597.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.77329-79597.Ar_EST_120301b_c3233%7Cdelta.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11437%7Cap3d1.for.78861-80064.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.78861-80064.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.78861-80064.Ar_EST_120301b_c11437%7Cap3d1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig730%7Csucrose.for.80010-82314.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.80010-82314.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.80010-82314.120301b_Contig730%7Csucrose.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2139%7Cppaa.for.81749-83046.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.81749-83046.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.81749-83046.Ar_EST_120301b_c2139%7Cppaa.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12678%7Cf-box_lrr-repeat.for.82248-83524.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.82248-83524.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.82248-83524.Ar_EST_120301b_c12678%7Cf-box_lrr-repeat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17905%7Chypothetical.for.87957-89135.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.87957-89135.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.87957-89135.Ar_EST_120301b_rep_c17905%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5855%7Cagencourt_50136586.for.88105-89314.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.88105-89314.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.88105-89314.Ar_EST_120301b_rep_c5855%7Cagencourt_50136586.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18715%7Cest29560.for.88099-89406.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.88099-89406.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.88099-89406.Ar_EST_120301b_rep_c18715%7Cest29560.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6749%7Cpgsp0011j20.for.88034-89440.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.88034-89440.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.88034-89440.Ar_EST_120301b_rep_c6749%7Cpgsp0011j20.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4535%7Cnucleosome.for.87965-89314.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.87965-89314.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.87965-89314.Ar_EST_120301b_rep_c4535%7Cnucleosome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8267%7C60s.for.88442-89564.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.88442-89564.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.88442-89564.Ar_EST_120301b_rep_c8267%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1246%7Cucrcp01_052_g05_t3.for.87968-89140.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.87968-89140.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.87968-89140.Ar_EST_120301b_c1246%7Cucrcp01_052_g05_t3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19666%7Cpredicted.for.89138-90434.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89138-90434.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89138-90434.Ar_EST_120301b_rep_c19666%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6620%7Cprotein.for.89020-90455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89020-90455.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89020-90455.Ar_EST_120301b_rep_c6620%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10160%7Cubiquitin.for.94605-95858.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.94605-95858.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.94605-95858.Ar_EST_120301b_c10160%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig284%7Cubiquitin.for.93053-95923.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.93053-95923.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.93053-95923.120301b_Contig284%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2103%7Cubiquitin.for.92176-94058.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.92176-94058.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.92176-94058.Ar_EST_120301b_c2103%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3295%7Chistone.for.95180-96441.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.95180-96441.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.95180-96441.Ar_EST_120301b_c3295%7Chistone.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c49%7Cadenylyl.for.96722-98599.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.96722-98599.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.96722-98599.Ar_EST_120301b_c49%7Cadenylyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5021%7Cadenylyl.for.97187-98435.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.97187-98435.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.97187-98435.Ar_EST_120301b_rep_c5021%7Cadenylyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig169%7Ctrna-dihydrouridine.for.97813-99168.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.97813-99168.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.97813-99168.120301b_Contig169%7Ctrna-dihydrouridine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11871%7Chypothetical.for.99403-100272.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.99403-100272.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.99403-100272.Ar_EST_120301b_c11871%7Chypothetical.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 total clusters:38 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:31 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:39 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:41 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:39 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:32 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:42 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:39 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:47 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:31 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:24 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086942%7Cgb%7CEFC40615%2E1%7C.for.1825-2792.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.1825-2792.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.1825-2792.gi%7C284086942%7Cgb%7CEFC40615%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089546%7Cgb%7CEFC43203%2E1%7C.for.4896-6250.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.4896-6250.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.4896-6250.gi%7C284089546%7Cgb%7CEFC43203%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095488%7Cgb%7CEFC49119%2E1%7C.for.4911-6250.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.4911-6250.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.4911-6250.gi%7C284095488%7Cgb%7CEFC49119%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097237%7Cgb%7CEFC50864%2E1%7C.for.6461-7958.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.6461-7958.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.6461-7958.gi%7C284097237%7Cgb%7CEFC50864%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084860%7Cgb%7CEFC38548%2E1%7C.for.7493-8939.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.7493-8939.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.7493-8939.gi%7C284084860%7Cgb%7CEFC38548%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082861%7Cgb%7CEFC36571%2E1%7C.for.8310-9520.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8310-9520.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8310-9520.gi%7C284082861%7Cgb%7CEFC36571%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093132%7Cgb%7CEFC46771%2E1%7C.for.9183-11023.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.9183-11023.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.9183-11023.gi%7C284093132%7Cgb%7CEFC46771%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089301%7Cgb%7CEFC42959%2E1%7C.for.10478-12039.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.10478-12039.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.10478-12039.gi%7C284089301%7Cgb%7CEFC42959%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095143%7Cgb%7CEFC48775%2E1%7C.for.10805-12048.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.10805-12048.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.10805-12048.gi%7C284095143%7Cgb%7CEFC48775%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093567%7Cgb%7CEFC47204%2E1%7C.for.13538-14646.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.13538-14646.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.13538-14646.gi%7C284093567%7Cgb%7CEFC47204%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083404%7Cgb%7CEFC37108%2E1%7C.for.15972-17740.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.15972-17740.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.15972-17740.gi%7C284083404%7Cgb%7CEFC37108%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088825%7Cgb%7CEFC42486%2E1%7C.for.16011-17746.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.16011-17746.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.16011-17746.gi%7C284088825%7Cgb%7CEFC42486%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084491%7Cgb%7CEFC38183%2E1%7C.for.20282-21918.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.20282-21918.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.20282-21918.gi%7C284084491%7Cgb%7CEFC38183%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083516%7Cgb%7CEFC37218%2E1%7C.for.24892-25899.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.24892-25899.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.24892-25899.gi%7C284083516%7Cgb%7CEFC37218%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083359%7Cgb%7CEFC37063%2E1%7C.for.33859-38447.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33859-38447.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33859-38447.gi%7C284083359%7Cgb%7CEFC37063%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082638%7Cgb%7CEFC36352%2E1%7C.for.33862-38664.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-38664.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-38664.gi%7C284082638%7Cgb%7CEFC36352%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086918%7Cgb%7CEFC40591%2E1%7C.for.33859-38664.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33859-38664.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33859-38664.gi%7C284086918%7Cgb%7CEFC40591%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083579%7Cgb%7CEFC37281%2E1%7C.for.33835-38453.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33835-38453.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33835-38453.gi%7C284083579%7Cgb%7CEFC37281%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096503%7Cgb%7CEFC50131%2E1%7C.for.33874-38615.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33874-38615.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33874-38615.gi%7C284096503%7Cgb%7CEFC50131%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091223%7Cgb%7CEFC44871%2E1%7C.for.33862-38447.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-38447.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-38447.gi%7C284091223%7Cgb%7CEFC44871%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086695%7Cgb%7CEFC40370%2E1%7C.for.33859-38459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33859-38459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33859-38459.gi%7C284086695%7Cgb%7CEFC40370%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093963%7Cgb%7CEFC47599%2E1%7C.for.33880-38616.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33880-38616.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33880-38616.gi%7C284093963%7Cgb%7CEFC47599%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089381%7Cgb%7CEFC43039%2E1%7C.for.33862-37772.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-37772.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-37772.gi%7C284089381%7Cgb%7CEFC43039%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086532%7Cgb%7CEFC40208%2E1%7C.for.33883-38447.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33883-38447.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33883-38447.gi%7C284086532%7Cgb%7CEFC40208%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083434%7Cgb%7CEFC37137%2E1%7C.for.33874-38459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33874-38459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33874-38459.gi%7C284083434%7Cgb%7CEFC37137%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084818%7Cgb%7CEFC38507%2E1%7C.for.33874-38459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33874-38459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33874-38459.gi%7C284084818%7Cgb%7CEFC38507%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092043%7Cgb%7CEFC45687%2E1%7C.for.33862-38357.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-38357.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-38357.gi%7C284092043%7Cgb%7CEFC45687%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083990%7Cgb%7CEFC37687%2E1%7C.for.33868-38453.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33868-38453.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33868-38453.gi%7C284083990%7Cgb%7CEFC37687%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094052%7Cgb%7CEFC47687%2E1%7C.for.33820-38636.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33820-38636.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33820-38636.gi%7C284094052%7Cgb%7CEFC47687%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085363%7Cgb%7CEFC39047%2E1%7C.for.33868-38435.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33868-38435.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33868-38435.gi%7C284085363%7Cgb%7CEFC39047%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086873%7Cgb%7CEFC40547%2E1%7C.for.33880-38607.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33880-38607.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33880-38607.gi%7C284086873%7Cgb%7CEFC40547%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083848%7Cgb%7CEFC37547%2E1%7C.for.33808-37841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33808-37841.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33808-37841.gi%7C284083848%7Cgb%7CEFC37547%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092675%7Cgb%7CEFC46316%2E1%7C.for.33862-38303.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-38303.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-38303.gi%7C284092675%7Cgb%7CEFC46316%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085442%7Cgb%7CEFC39126%2E1%7C.for.33874-38613.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33874-38613.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33874-38613.gi%7C284085442%7Cgb%7CEFC39126%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083453%7Cgb%7CEFC37156%2E1%7C.for.33880-38252.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33880-38252.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33880-38252.gi%7C284083453%7Cgb%7CEFC37156%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085964%7Cgb%7CEFC39644%2E1%7C.for.33820-37556.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33820-37556.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33820-37556.gi%7C284085964%7Cgb%7CEFC39644%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094593%7Cgb%7CEFC48227%2E1%7C.for.38975-41324.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.38975-41324.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.38975-41324.gi%7C284094593%7Cgb%7CEFC48227%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092016%7Cgb%7CEFC45660%2E1%7C.for.40930-43013.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.40930-43013.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.40930-43013.gi%7C284092016%7Cgb%7CEFC45660%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096618%7Cgb%7CEFC50246%2E1%7C.for.41125-42953.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.41125-42953.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.41125-42953.gi%7C284096618%7Cgb%7CEFC50246%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093000%7Cgb%7CEFC46640%2E1%7C.for.49360-50363.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.49360-50363.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.49360-50363.gi%7C284093000%7Cgb%7CEFC46640%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094695%7Cgb%7CEFC48328%2E1%7C.for.51149-54740.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.51149-54740.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.51149-54740.gi%7C284094695%7Cgb%7CEFC48328%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087414%7Cgb%7CEFC41084%2E1%7C.for.51149-54521.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.51149-54521.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.51149-54521.gi%7C284087414%7Cgb%7CEFC41084%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091446%7Cgb%7CEFC45093%2E1%7C.for.54887-57609.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57609.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57609.gi%7C284091446%7Cgb%7CEFC45093%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094819%7Cgb%7CEFC48452%2E1%7C.for.55097-57597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.55097-57597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.55097-57597.gi%7C284094819%7Cgb%7CEFC48452%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084267%7Cgb%7CEFC37961%2E1%7C.for.55241-57603.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.55241-57603.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.55241-57603.gi%7C284084267%7Cgb%7CEFC37961%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092327%7Cgb%7CEFC45969%2E1%7C.for.54986-57609.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54986-57609.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54986-57609.gi%7C284092327%7Cgb%7CEFC45969%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082776%7Cgb%7CEFC36488%2E1%7C.for.54887-57609.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57609.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57609.gi%7C284082776%7Cgb%7CEFC36488%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084526%7Cgb%7CEFC38218%2E1%7C.for.54956-57597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54956-57597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54956-57597.gi%7C284084526%7Cgb%7CEFC38218%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085272%7Cgb%7CEFC38957%2E1%7C.for.54887-57627.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57627.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57627.gi%7C284085272%7Cgb%7CEFC38957%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085240%7Cgb%7CEFC38925%2E1%7C.for.54887-57627.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57627.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57627.gi%7C284085240%7Cgb%7CEFC38925%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085885%7Cgb%7CEFC39565%2E1%7C.for.54887-57627.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57627.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57627.gi%7C284085885%7Cgb%7CEFC39565%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C33694258%7Cgb%7CAAQ24867%2E1%7C.for.54887-57609.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57609.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57609.gi%7C33694258%7Cgb%7CAAQ24867%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089387%7Cgb%7CEFC43045%2E1%7C.for.54887-57609.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57609.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57609.gi%7C284089387%7Cgb%7CEFC43045%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089144%7Cgb%7CEFC42803%2E1%7C.for.59122-61977.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59122-61977.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59122-61977.gi%7C284089144%7Cgb%7CEFC42803%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082068%7Cgb%7CEFC35853%2E1%7C.for.59104-61917.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59104-61917.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59104-61917.gi%7C284082068%7Cgb%7CEFC35853%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084087%7Cgb%7CEFC37783%2E1%7C.for.59086-61917.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59086-61917.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59086-61917.gi%7C284084087%7Cgb%7CEFC37783%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088982%7Cgb%7CEFC42642%2E1%7C.for.59083-61911.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59083-61911.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59083-61911.gi%7C284088982%7Cgb%7CEFC42642%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089876%7Cgb%7CEFC43531%2E1%7C.for.59116-62028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59116-62028.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59116-62028.gi%7C284089876%7Cgb%7CEFC43531%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083134%7Cgb%7CEFC36841%2E1%7C.for.59113-61911.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59113-61911.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59113-61911.gi%7C284083134%7Cgb%7CEFC36841%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093774%7Cgb%7CEFC47410%2E1%7C.for.59047-62019.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59047-62019.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59047-62019.gi%7C284093774%7Cgb%7CEFC47410%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087481%7Cgb%7CEFC41150%2E1%7C.for.59086-61956.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59086-61956.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59086-61956.gi%7C284087481%7Cgb%7CEFC41150%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086252%7Cgb%7CEFC39930%2E1%7C.for.59212-61932.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59212-61932.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59212-61932.gi%7C284086252%7Cgb%7CEFC39930%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089785%7Cgb%7CEFC43440%2E1%7C.for.59116-62019.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59116-62019.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59116-62019.gi%7C284089785%7Cgb%7CEFC43440%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089211%7Cgb%7CEFC42870%2E1%7C.for.59146-61911.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59146-61911.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59146-61911.gi%7C284089211%7Cgb%7CEFC42870%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084234%7Cgb%7CEFC37929%2E1%7C.for.59059-62019.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59059-62019.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59059-62019.gi%7C284084234%7Cgb%7CEFC37929%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089683%7Cgb%7CEFC43339%2E1%7C.for.59092-61917.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-61917.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-61917.gi%7C284089683%7Cgb%7CEFC43339%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081057%7Cgb%7CEFC35279%2E1%7C.for.59092-62016.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-62016.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-62016.gi%7C284081057%7Cgb%7CEFC35279%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093932%7Cgb%7CEFC47568%2E1%7C.for.59104-61917.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59104-61917.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59104-61917.gi%7C284093932%7Cgb%7CEFC47568%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082314%7Cgb%7CEFC36048%2E1%7C.for.59092-61917.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-61917.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-61917.gi%7C284082314%7Cgb%7CEFC36048%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087499%7Cgb%7CEFC41168%2E1%7C.for.59203-61941.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59203-61941.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59203-61941.gi%7C284087499%7Cgb%7CEFC41168%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094795%7Cgb%7CEFC48428%2E1%7C.for.59119-62010.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59119-62010.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59119-62010.gi%7C284094795%7Cgb%7CEFC48428%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084505%7Cgb%7CEFC38197%2E1%7C.for.59116-61923.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59116-61923.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59116-61923.gi%7C284084505%7Cgb%7CEFC38197%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082806%7Cgb%7CEFC36517%2E1%7C.for.59134-61917.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59134-61917.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59134-61917.gi%7C284082806%7Cgb%7CEFC36517%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084837%7Cgb%7CEFC38526%2E1%7C.for.59092-62028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-62028.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-62028.gi%7C284084837%7Cgb%7CEFC38526%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091590%7Cgb%7CEFC45236%2E1%7C.for.59116-61968.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59116-61968.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59116-61968.gi%7C284091590%7Cgb%7CEFC45236%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087889%7Cgb%7CEFC41556%2E1%7C.for.59095-62019.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59095-62019.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59095-62019.gi%7C284087889%7Cgb%7CEFC41556%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084171%7Cgb%7CEFC37866%2E1%7C.for.59092-61917.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-61917.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-61917.gi%7C284084171%7Cgb%7CEFC37866%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093137%7Cgb%7CEFC46776%2E1%7C.for.59107-62082.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59107-62082.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59107-62082.gi%7C284093137%7Cgb%7CEFC46776%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087305%7Cgb%7CEFC40976%2E1%7C.for.59059-62067.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59059-62067.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59059-62067.gi%7C284087305%7Cgb%7CEFC40976%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092523%7Cgb%7CEFC46165%2E1%7C.for.59086-61962.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59086-61962.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59086-61962.gi%7C284092523%7Cgb%7CEFC46165%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083624%7Cgb%7CEFC37325%2E1%7C.for.59092-61911.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-61911.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-61911.gi%7C284083624%7Cgb%7CEFC37325%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092041%7Cgb%7CEFC45685%2E1%7C.for.59206-61941.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59206-61941.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59206-61941.gi%7C284092041%7Cgb%7CEFC45685%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080810%7Cgb%7CEFC35195%2E1%7C.for.60500-61911.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.60500-61911.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.60500-61911.gi%7C284080810%7Cgb%7CEFC35195%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092124%7Cgb%7CEFC45767%2E1%7C.for.67410-68831.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.67410-68831.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.67410-68831.gi%7C284092124%7Cgb%7CEFC45767%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090008%7Cgb%7CEFC43662%2E1%7C.for.78206-80506.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.78206-80506.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.78206-80506.gi%7C284090008%7Cgb%7CEFC43662%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096915%7Cgb%7CEFC50542%2E1%7C.for.80135-82254.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.80135-82254.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.80135-82254.gi%7C284096915%7Cgb%7CEFC50542%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085103%7Cgb%7CEFC38789%2E1%7C.for.80057-82221.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.80057-82221.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.80057-82221.gi%7C284085103%7Cgb%7CEFC38789%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095199%7Cgb%7CEFC48830%2E1%7C.for.84894-87733.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.84894-87733.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.84894-87733.gi%7C284095199%7Cgb%7CEFC48830%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090474%7Cgb%7CEFC44126%2E1%7C.for.89200-90179.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89200-90179.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89200-90179.gi%7C284090474%7Cgb%7CEFC44126%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088600%7Cgb%7CEFC42263%2E1%7C.for.89823-91248.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89823-91248.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89823-91248.gi%7C284088600%7Cgb%7CEFC42263%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089013%7Cgb%7CEFC42673%2E1%7C.for.89936-91248.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89936-91248.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89936-91248.gi%7C284089013%7Cgb%7CEFC42673%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089693%7Cgb%7CEFC43349%2E1%7C.for.89820-91221.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89820-91221.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89820-91221.gi%7C284089693%7Cgb%7CEFC43349%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088684%7Cgb%7CEFC42346%2E1%7C.for.89826-91155.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89826-91155.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89826-91155.gi%7C284088684%7Cgb%7CEFC42346%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090665%7Cgb%7CEFC44316%2E1%7C.for.93196-95879.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.93196-95879.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.93196-95879.gi%7C284090665%7Cgb%7CEFC44316%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095605%7Cgb%7CEFC49235%2E1%7C.for.96759-98430.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.96759-98430.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.96759-98430.gi%7C284095605%7Cgb%7CEFC49235%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 ...processing 0 of 10 ...processing 1 of 10 ...processing 2 of 10 ...processing 3 of 10 ...processing 4 of 10 ...processing 5 of 10 ...processing 6 of 10 ...processing 7 of 10 ...processing 8 of 10 ...processing 9 of 10 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 22 ...processing 1 of 22 ...processing 2 of 22 ...processing 3 of 22 ...processing 4 of 22 ...processing 5 of 22 ...processing 6 of 22 ...processing 7 of 22 ...processing 8 of 22 ...processing 9 of 22 ...processing 10 of 22 ...processing 11 of 22 ...processing 12 of 22 ...processing 13 of 22 ...processing 14 of 22 ...processing 15 of 22 ...processing 16 of 22 ...processing 17 of 22 ...processing 18 of 22 ...processing 19 of 22 ...trimming the rest total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 ...processing 0 of 11 ...processing 1 of 11 ...processing 2 of 11 ...processing 3 of 11 ...processing 4 of 11 ...processing 5 of 11 ...processing 6 of 11 ...processing 7 of 11 ...processing 8 of 11 ...processing 9 of 11 ...processing 10 of 11 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:23 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 26 ...processing 1 of 26 ...processing 2 of 26 ...processing 3 of 26 ...processing 4 of 26 ...processing 5 of 26 ...processing 6 of 26 ...processing 7 of 26 ...processing 8 of 26 ...processing 9 of 26 ...processing 10 of 26 ...processing 11 of 26 ...processing 12 of 26 ...processing 13 of 26 ...processing 14 of 26 ...processing 15 of 26 ...processing 16 of 26 ...processing 17 of 26 ...processing 18 of 26 ...processing 19 of 26 ...processing 20 of 26 ...processing 21 of 26 ...processing 22 of 26 ...trimming the rest total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 10 ...processing 1 of 10 ...processing 2 of 10 ...processing 3 of 10 ...processing 4 of 10 ...processing 5 of 10 ...processing 6 of 10 ...processing 7 of 10 ...processing 8 of 10 ...processing 9 of 10 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:15 now processing 0 total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 total clusters:15 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 10 ...processing 1 of 10 ...processing 2 of 10 ...processing 3 of 10 ...processing 4 of 10 ...processing 5 of 10 ...processing 6 of 10 ...processing 7 of 10 ...processing 8 of 10 ...processing 9 of 10 total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:15 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 20 ...processing 1 of 20 ...processing 2 of 20 ...processing 3 of 20 ...processing 4 of 20 ...processing 5 of 20 ...processing 6 of 20 ...processing 7 of 20 ...processing 8 of 20 ...processing 9 of 20 ...processing 10 of 20 ...processing 11 of 20 ...processing 12 of 20 ...processing 13 of 20 ...processing 14 of 20 ...processing 15 of 20 ...processing 16 of 20 ...processing 17 of 20 ...processing 18 of 20 ...processing 19 of 20 ...trimming the rest ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 20 ...processing 1 of 20 ...processing 2 of 20 ...processing 3 of 20 ...processing 4 of 20 ...processing 5 of 20 ...processing 6 of 20 ...processing 7 of 20 ...processing 8 of 20 ...processing 9 of 20 ...processing 10 of 20 ...processing 11 of 20 ...processing 12 of 20 ...processing 13 of 20 ...processing 14 of 20 ...processing 15 of 20 ...processing 16 of 20 ...processing 17 of 20 ...processing 18 of 20 ...processing 19 of 20 ...trimming the rest total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.6660-7758.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.6660-7758.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.6660-7758.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.10462-11848.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.10462-11848.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.10462-11848.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.13353-14446.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.13353-14446.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.13353-14446.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.14681-15653.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.14681-15653.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.14681-15653.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.20345-21718.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.20345-21718.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.20345-21718.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.32435-33316.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.32435-33316.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.32435-33316.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.39067-42944.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.39067-42944.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.39067-42944.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.45084-49037.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.45084-49037.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.45084-49037.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.59291-61882.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.59291-61882.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.59291-61882.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.80209-82114.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.80209-82114.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.80209-82114.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.88298-89260.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.88298-89260.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.88298-89260.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.92375-95723.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.92375-95723.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.92375-95723.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.97137-98274.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.97137-98274.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.97137-98274.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.533-4449.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.533-4449.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.533-4449.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.4956-6050.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.4956-6050.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.4956-6050.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.7628-10823.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.7628-10823.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.7628-10823.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.11496-13164.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.11496-13164.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.11496-13164.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.24994-25708.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.24994-25708.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.24994-25708.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.29572-30475.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.29572-30475.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.29572-30475.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.34007-38507.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.34007-38507.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.34007-38507.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.50769-54822.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.50769-54822.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.50769-54822.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.55086-57427.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.55086-57427.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.55086-57427.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.57834-59002.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.57834-59002.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.57834-59002.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.67587-68691.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.67587-68691.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.67587-68691.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.70350-71375.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.70350-71375.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.70350-71375.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.75324-80306.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.75324-80306.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.75324-80306.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.81948-83324.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.81948-83324.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.81948-83324.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.85060-87533.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.85060-87533.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.85060-87533.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.89219-91048.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.89219-91048.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.89219-91048.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.95379-96241.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.95379-96241.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.95379-96241.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.96958-98230.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.96958-98230.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.96958-98230.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.99602-100272.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.99602-100272.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.99602-100272.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C41 Length: 154535 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:4 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:1 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:8 current j:0 j_size:8 current j:1 j_size:8 current j:2 j_size:8 current j:3 j_size:8 current j:4 j_size:8 current j:5 j_size:8 current j:6 j_size:8 current j:7 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C41.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C41.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:5 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18484%7Chydroxyproline-rich.for.2187-3523.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.2187-3523.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.2187-3523.Ar_EST_120301b_c18484%7Chydroxyproline-rich.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1478%7Cring.for.4286-5745.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.4286-5745.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.4286-5745.Ar_EST_120301b_c1478%7Cring.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17193%7Cf-box.for.5269-6583.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.5269-6583.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.5269-6583.Ar_EST_120301b_c17193%7Cf-box.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4442%7Ceukaryotic.for.10165-11796.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.10165-11796.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.10165-11796.Ar_EST_120301b_rep_c4442%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8843%7Cx-ray.for.7105-8533.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7105-8533.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7105-8533.Ar_EST_120301b_c8843%7Cx-ray.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14364%7Ceukaryotic.for.7508-11779.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7508-11779.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7508-11779.Ar_EST_120301b_rep_c14364%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3817%7Cx-ray.for.7840-9618.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7840-9618.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7840-9618.Ar_EST_120301b_c3817%7Cx-ray.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9670%7Ceukaryotic.for.10491-11699.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.10491-11699.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.10491-11699.Ar_EST_120301b_rep_c9670%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19424%7Cx-ray.for.7408-8427.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7408-8427.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7408-8427.Ar_EST_120301b_rep_c19424%7Cx-ray.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8252%7Cser.for.13210-14765.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.13210-14765.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.13210-14765.Ar_EST_120301b_c8252%7Cser.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11587%7Cpredicted.for.14122-15513.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.14122-15513.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.14122-15513.Ar_EST_120301b_c11587%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3305%7Calpha-l-glutamate.for.16307-18409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.16307-18409.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.16307-18409.Ar_EST_120301b_c3305%7Calpha-l-glutamate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11608%7Cribosomal.for.16177-17586.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.16177-17586.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.16177-17586.Ar_EST_120301b_c11608%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8254%7Calpha-l-glutamate.for.17251-18334.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.17251-18334.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.17251-18334.Ar_EST_120301b_c8254%7Calpha-l-glutamate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1594%7Cformate.for.18210-20004.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.18210-20004.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.18210-20004.Ar_EST_120301b_c1594%7Cformate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9408%7Chypothetical.for.19279-21053.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.19279-21053.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.19279-21053.Ar_EST_120301b_c9408%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17501%7Csignal.for.21176-22828.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.21176-22828.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.21176-22828.Ar_EST_120301b_c17501%7Csignal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6353%7Ceukaryotic.for.25430-27136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.25430-27136.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.25430-27136.Ar_EST_120301b_rep_c6353%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5611%7Ceukaryotic.for.24776-27122.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.24776-27122.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.24776-27122.Ar_EST_120301b_rep_c5611%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig227%7Czinc.for.26362-27835.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.26362-27835.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.26362-27835.120301b_Contig227%7Czinc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20371%7Chypothetical.for.27387-29476.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.27387-29476.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.27387-29476.Ar_EST_120301b_c20371%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2180%7Cpredicted.for.28305-29601.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.28305-29601.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.28305-29601.Ar_EST_120301b_c2180%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c249%7Ccalmodulin.for.29478-30871.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29478-30871.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29478-30871.Ar_EST_120301b_c249%7Ccalmodulin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19994%7Cacyl-.for.30216-31226.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.30216-31226.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.30216-31226.Ar_EST_120301b_rep_c19994%7Cacyl-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1202%7Cwd-40.for.31015-32417.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.31015-32417.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.31015-32417.120301b_Contig1202%7Cwd-40.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13644%7Cserine.for.30760-32079.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.30760-32079.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.30760-32079.Ar_EST_120301b_c13644%7Cserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13183%7C---NA---.for.33943-35220.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.33943-35220.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.33943-35220.Ar_EST_120301b_c13183%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9362%7Cprotein.for.34412-35861.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.34412-35861.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.34412-35861.Ar_EST_120301b_c9362%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c276%7Cprotein.for.35235-36619.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.35235-36619.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.35235-36619.Ar_EST_120301b_c276%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15761%7C---NA---.for.36991-38330.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.36991-38330.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.36991-38330.Ar_EST_120301b_c15761%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8595%7C---NA---.for.38092-39496.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.38092-39496.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.38092-39496.Ar_EST_120301b_c8595%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14176%7Cdg2-90j1.for.39278-40527.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.39278-40527.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.39278-40527.Ar_EST_120301b_c14176%7Cdg2-90j1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17402%7Cprotein.for.40329-41323.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.40329-41323.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.40329-41323.Ar_EST_120301b_c17402%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15139%7C-.for.41265-42587.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.41265-42587.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.41265-42587.Ar_EST_120301b_c15139%7C-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18485%7Cmicrotubule-associated.for.41154-42264.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.41154-42264.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.41154-42264.Ar_EST_120301b_c18485%7Cmicrotubule-associated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2523%7Cnuclear.for.41989-43342.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.41989-43342.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.41989-43342.Ar_EST_120301b_c2523%7Cnuclear.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1188%7Ccytoplasmic.for.43231-44554.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.43231-44554.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.43231-44554.Ar_EST_120301b_c1188%7Ccytoplasmic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15535%7Cmajor.for.44232-45248.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.44232-45248.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.44232-45248.Ar_EST_120301b_c15535%7Cmajor.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13992%7Cmajor.for.45074-46353.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.45074-46353.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.45074-46353.Ar_EST_120301b_c13992%7Cmajor.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5585%7Cbax.for.51794-53356.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.51794-53356.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.51794-53356.Ar_EST_120301b_rep_c5585%7Cbax.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig746%7Chypothetical.for.53525-54999.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.53525-54999.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.53525-54999.120301b_Contig746%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10918%7Csomething.for.56330-57676.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.56330-57676.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.56330-57676.Ar_EST_120301b_c10918%7Csomething.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11928%7Csomething.for.57498-59333.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.57498-59333.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.57498-59333.Ar_EST_120301b_c11928%7Csomething.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17010%7Cleucine.for.57436-58393.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.57436-58393.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.57436-58393.Ar_EST_120301b_c17010%7Cleucine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c211%7Cbeta-.for.65659-67125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.65659-67125.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.65659-67125.Ar_EST_120301b_c211%7Cbeta-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig490%7Cg-protein.for.66457-68388.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66457-68388.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66457-68388.120301b_Contig490%7Cg-protein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig117%7Cheat.for.67633-70247.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.67633-70247.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.67633-70247.120301b_Contig117%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2590%7Cmethyltransferase.for.70139-71511.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.70139-71511.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.70139-71511.Ar_EST_120301b_c2590%7Cmethyltransferase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17137%7Chypothetical.for.70937-72211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.70937-72211.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.70937-72211.Ar_EST_120301b_c17137%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12127%7Cbag.for.72882-74181.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.72882-74181.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.72882-74181.Ar_EST_120301b_c12127%7Cbag.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11701%7Calpha.for.73539-75194.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.73539-75194.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.73539-75194.Ar_EST_120301b_c11701%7Calpha.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11059%7C---NA---.for.74908-75962.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.74908-75962.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.74908-75962.Ar_EST_120301b_c11059%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14862%7Cpredicted.for.75374-76344.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.75374-76344.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.75374-76344.Ar_EST_120301b_c14862%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c21%7Ctrehalose-6-phosphate.for.75748-78779.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.75748-78779.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.75748-78779.Ar_EST_120301b_c21%7Ctrehalose-6-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15607%7C-trehalose-phosphate.for.77246-78385.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.77246-78385.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.77246-78385.Ar_EST_120301b_rep_c15607%7C-trehalose-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15030%7C-trehalose-phosphate.for.75564-76902.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.75564-76902.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.75564-76902.Ar_EST_120301b_c15030%7C-trehalose-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16719%7C---NA---.for.78376-79899.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.78376-79899.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.78376-79899.Ar_EST_120301b_c16719%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4679%7Ccalcium.for.79728-81631.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.79728-81631.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.79728-81631.Ar_EST_120301b_rep_c4679%7Ccalcium.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6123%7Ccalcium-binding.for.79688-81126.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.79688-81126.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.79688-81126.Ar_EST_120301b_rep_c6123%7Ccalcium-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c192%7C40s.for.82195-83413.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82195-83413.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82195-83413.Ar_EST_120301b_c192%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19660%7C40s.for.82241-83413.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82241-83413.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82241-83413.Ar_EST_120301b_rep_c19660%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20551%7C40s.for.82228-83501.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82228-83501.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82228-83501.Ar_EST_120301b_rep_c20551%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19968%7Cribosomal.for.82233-83376.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82233-83376.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82233-83376.Ar_EST_120301b_rep_c19968%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19279%7Cgolgi.for.83109-84409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.83109-84409.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.83109-84409.Ar_EST_120301b_c19279%7Cgolgi.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12101%7Cgolgi.for.83398-84791.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.83398-84791.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.83398-84791.Ar_EST_120301b_c12101%7Cgolgi.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14459%7Cterminal.for.85226-86142.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.85226-86142.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.85226-86142.Ar_EST_120301b_c14459%7Cterminal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11091%7Ccell.for.87167-88894.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.87167-88894.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.87167-88894.Ar_EST_120301b_c11091%7Ccell.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16049%7Cn-acetylglucosaminylphosphatidylinositol.for.91301-92567.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.91301-92567.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.91301-92567.Ar_EST_120301b_c16049%7Cn-acetylglucosaminylphosphatidylinositol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10463%7Cpolycystin.for.93843-95353.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.93843-95353.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.93843-95353.Ar_EST_120301b_c10463%7Cpolycystin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19139%7C---NA---.for.97938-99210.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.97938-99210.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.97938-99210.Ar_EST_120301b_c19139%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19439%7C1106908803323.for.97484-98616.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.97484-98616.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.97484-98616.Ar_EST_120301b_c19439%7C1106908803323.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8788%7Cp02431_mmt-2407_g07_026.for.97690-99044.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.97690-99044.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.97690-99044.Ar_EST_120301b_c8788%7Cp02431_mmt-2407_g07_026.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18344%7Csjs.for.102945-104249.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.102945-104249.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.102945-104249.Ar_EST_120301b_c18344%7Csjs.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11384%7Ctubby.for.103787-105337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.103787-105337.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.103787-105337.Ar_EST_120301b_c11384%7Ctubby.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1737%7Cgaf.for.105107-106111.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.105107-106111.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.105107-106111.Ar_EST_120301b_c1737%7Cgaf.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c764%7Cwd.for.108045-109340.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.108045-109340.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.108045-109340.Ar_EST_120301b_c764%7Cwd.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig429%7Cprotein.for.108478-110082.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.108478-110082.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.108478-110082.120301b_Contig429%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11559%7Csodium-coupled.for.109747-111803.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.109747-111803.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.109747-111803.Ar_EST_120301b_c11559%7Csodium-coupled.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4314%7Cadp-ribosylation.for.112569-113963.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112569-113963.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112569-113963.Ar_EST_120301b_rep_c4314%7Cadp-ribosylation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c564%7Cribosomal.for.113229-114795.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.113229-114795.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.113229-114795.Ar_EST_120301b_c564%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6629%7Chypothetical.for.116163-117627.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.116163-117627.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.116163-117627.Ar_EST_120301b_rep_c6629%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20242%7Chydra.for.116171-117286.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.116171-117286.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.116171-117286.Ar_EST_120301b_rep_c20242%7Chydra.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17271%7Chx350990.for.118102-119434.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.118102-119434.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.118102-119434.Ar_EST_120301b_c17271%7Chx350990.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13812%7Creinhardtii.for.123923-125193.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.123923-125193.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.123923-125193.Ar_EST_120301b_c13812%7Creinhardtii.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8787%7Ctraf-type.for.127786-129861.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.127786-129861.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.127786-129861.Ar_EST_120301b_c8787%7Ctraf-type.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1865%7Cprotein.for.130511-131973.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.130511-131973.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.130511-131973.Ar_EST_120301b_c1865%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17512%7Cpredicted.for.131444-132940.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.131444-132940.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.131444-132940.Ar_EST_120301b_c17512%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10556%7Cpredicted.for.132788-134373.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.132788-134373.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.132788-134373.Ar_EST_120301b_c10556%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig718%7Cci569863.for.134029-135481.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.134029-135481.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.134029-135481.120301b_Contig718%7Cci569863.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2633%7Cprotein.for.134795-136208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.134795-136208.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.134795-136208.Ar_EST_120301b_c2633%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16910%7Cabc.for.137462-139213.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.137462-139213.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.137462-139213.Ar_EST_120301b_c16910%7Cabc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1871%7Catp-binding.for.139326-141444.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.139326-141444.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.139326-141444.Ar_EST_120301b_c1871%7Catp-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17554%7Cby908063.for.138639-140232.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.138639-140232.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.138639-140232.Ar_EST_120301b_c17554%7Cby908063.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11060%7Cpredicted.for.141427-142899.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.141427-142899.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.141427-142899.Ar_EST_120301b_c11060%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13278%7Ca65o08n1.for.142316-143625.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.142316-143625.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.142316-143625.Ar_EST_120301b_c13278%7Ca65o08n1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17268%7C---NA---.for.142931-144237.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.142931-144237.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.142931-144237.Ar_EST_120301b_c17268%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15928%7Cig.for.146738-148264.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.146738-148264.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.146738-148264.Ar_EST_120301b_c15928%7Cig.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2769%7Cprotein.for.149095-151248.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.149095-151248.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.149095-151248.Ar_EST_120301b_c2769%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2370%7Cglycosylphosphatidylinositol.for.150499-151720.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.150499-151720.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.150499-151720.Ar_EST_120301b_c2370%7Cglycosylphosphatidylinositol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13294%7Cglycosylphosphatidylinositol.for.151378-152573.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.151378-152573.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.151378-152573.Ar_EST_120301b_c13294%7Cglycosylphosphatidylinositol.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:72 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:72 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:72 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:72 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:72 now processing 0 total clusters:72 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:40 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:35 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:35 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:43 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:26 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:49 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:44 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:49 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:36 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:41 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081903%7Cgb%7CEFC35733%2E1%7C.for.7123-9212.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7123-9212.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7123-9212.gi%7C284081903%7Cgb%7CEFC35733%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084058%7Cgb%7CEFC37754%2E1%7C.for.7123-8168.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7123-8168.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7123-8168.gi%7C284084058%7Cgb%7CEFC37754%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091255%7Cgb%7CEFC44903%2E1%7C.for.10243-11777.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.10243-11777.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.10243-11777.gi%7C284091255%7Cgb%7CEFC44903%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089366%7Cgb%7CEFC43024%2E1%7C.for.14773-16385.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.14773-16385.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.14773-16385.gi%7C284089366%7Cgb%7CEFC43024%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084895%7Cgb%7CEFC38583%2E1%7C.for.16319-18374.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.16319-18374.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.16319-18374.gi%7C284084895%7Cgb%7CEFC38583%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090994%7Cgb%7CEFC44643%2E1%7C.for.17715-18874.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.17715-18874.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.17715-18874.gi%7C284090994%7Cgb%7CEFC44643%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092047%7Cgb%7CEFC45691%2E1%7C.for.18398-20016.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.18398-20016.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.18398-20016.gi%7C284092047%7Cgb%7CEFC45691%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081730%7Cgb%7CEFC35619%2E1%7C.for.18434-19503.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.18434-19503.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.18434-19503.gi%7C284081730%7Cgb%7CEFC35619%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084767%7Cgb%7CEFC38456%2E1%7C.for.18383-20040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.18383-20040.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.18383-20040.gi%7C284084767%7Cgb%7CEFC38456%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086665%7Cgb%7CEFC40340%2E1%7C.for.23275-24275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.23275-24275.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.23275-24275.gi%7C284086665%7Cgb%7CEFC40340%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086663%7Cgb%7CEFC40338%2E1%7C.for.23281-24302.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.23281-24302.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.23281-24302.gi%7C284086663%7Cgb%7CEFC40338%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089940%7Cgb%7CEFC43594%2E1%7C.for.24971-27117.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.24971-27117.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.24971-27117.gi%7C284089940%7Cgb%7CEFC43594%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C1705567%7Csp%7CP53440%2E1%7CCALMF_NAEGR.for.29497-30869.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.gi%7C1705567%7Csp%7CP53440%2E1%7CCALMF_NAEGR.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097162%7Cgb%7CEFC50789%2E1%7C.for.29497-30869.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.gi%7C284097162%7Cgb%7CEFC50789%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085072%7Cgb%7CEFC38759%2E1%7C.for.29566-30728.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29566-30728.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29566-30728.gi%7C284085072%7Cgb%7CEFC38759%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C311815490%7Cemb%7CCBX84382%2E1%7C.for.29497-30869.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.gi%7C311815490%7Cemb%7CCBX84382%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C206984671%7Cemb%7CCAR80909%2E1%7C.for.29497-30869.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.gi%7C206984671%7Cemb%7CCAR80909%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C458232%7Cgb%7CAAA81897%2E1%7C.for.29497-30869.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.gi%7C458232%7Cgb%7CAAA81897%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091622%7Cgb%7CEFC45268%2E1%7C.for.30178-31220.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.30178-31220.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.30178-31220.gi%7C284091622%7Cgb%7CEFC45268%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081107%7Cgb%7CEFC35296%2E1%7C.for.44270-45567.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.44270-45567.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.44270-45567.gi%7C284081107%7Cgb%7CEFC35296%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093209%7Cgb%7CEFC46848%2E1%7C.for.49527-51284.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.49527-51284.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.49527-51284.gi%7C284093209%7Cgb%7CEFC46848%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092652%7Cgb%7CEFC46293%2E1%7C.for.66531-68353.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66531-68353.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66531-68353.gi%7C284092652%7Cgb%7CEFC46293%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084712%7Cgb%7CEFC38402%2E1%7C.for.66531-68326.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66531-68326.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66531-68326.gi%7C284084712%7Cgb%7CEFC38402%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083518%7Cgb%7CEFC37220%2E1%7C.for.66540-68347.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66540-68347.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66540-68347.gi%7C284083518%7Cgb%7CEFC37220%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095980%7Cgb%7CEFC49609%2E1%7C.for.66525-68335.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66525-68335.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66525-68335.gi%7C284095980%7Cgb%7CEFC49609%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091782%7Cgb%7CEFC45427%2E1%7C.for.66957-68161.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66957-68161.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66957-68161.gi%7C284091782%7Cgb%7CEFC45427%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085503%7Cgb%7CEFC39186%2E1%7C.for.66549-68335.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66549-68335.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66549-68335.gi%7C284085503%7Cgb%7CEFC39186%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093388%7Cgb%7CEFC47026%2E1%7C.for.67134-68098.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.67134-68098.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.67134-68098.gi%7C284093388%7Cgb%7CEFC47026%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095344%7Cgb%7CEFC48975%2E1%7C.for.66495-68329.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66495-68329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66495-68329.gi%7C284095344%7Cgb%7CEFC48975%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095754%7Cgb%7CEFC49384%2E1%7C.for.66543-68347.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66543-68347.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66543-68347.gi%7C284095754%7Cgb%7CEFC49384%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087598%7Cgb%7CEFC41267%2E1%7C.for.67616-70365.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.67616-70365.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.67616-70365.gi%7C284087598%7Cgb%7CEFC41267%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095546%7Cgb%7CEFC49176%2E1%7C.for.75463-77811.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.75463-77811.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.75463-77811.gi%7C284095546%7Cgb%7CEFC49176%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095547%7Cgb%7CEFC49177%2E1%7C.for.77195-78546.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.77195-78546.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.77195-78546.gi%7C284095547%7Cgb%7CEFC49177%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091342%7Cgb%7CEFC44989%2E1%7C.for.79831-81624.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.79831-81624.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.79831-81624.gi%7C284091342%7Cgb%7CEFC44989%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092680%7Cgb%7CEFC46321%2E1%7C.for.82221-83413.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82221-83413.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82221-83413.gi%7C284092680%7Cgb%7CEFC46321%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096588%7Cgb%7CEFC50216%2E1%7C.for.83361-84536.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.83361-84536.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.83361-84536.gi%7C284096588%7Cgb%7CEFC50216%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090846%7Cgb%7CEFC44496%2E1%7C.for.84362-86850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.84362-86850.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.84362-86850.gi%7C284090846%7Cgb%7CEFC44496%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089235%7Cgb%7CEFC42894%2E1%7C.for.88402-90836.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.88402-90836.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.88402-90836.gi%7C284089235%7Cgb%7CEFC42894%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091855%7Cgb%7CEFC45500%2E1%7C.for.91109-92648.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.91109-92648.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.91109-92648.gi%7C284091855%7Cgb%7CEFC45500%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087921%7Cgb%7CEFC41587%2E1%7C.for.96505-97541.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.96505-97541.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.96505-97541.gi%7C284087921%7Cgb%7CEFC41587%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086204%7Cgb%7CEFC39882%2E1%7C.for.100754-101769.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.100754-101769.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.100754-101769.gi%7C284086204%7Cgb%7CEFC39882%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088301%7Cgb%7CEFC41965%2E1%7C.for.104798-105909.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.104798-105909.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.104798-105909.gi%7C284088301%7Cgb%7CEFC41965%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090924%7Cgb%7CEFC44573%2E1%7C.for.108070-110047.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.108070-110047.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.108070-110047.gi%7C284090924%7Cgb%7CEFC44573%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097066%7Cgb%7CEFC50693%2E1%7C.for.111783-113222.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.111783-113222.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.111783-113222.gi%7C284097066%7Cgb%7CEFC50693%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090632%7Cgb%7CEFC44283%2E1%7C.for.112604-113928.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112604-113928.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112604-113928.gi%7C284090632%7Cgb%7CEFC44283%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083438%7Cgb%7CEFC37141%2E1%7C.for.112580-113916.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112580-113916.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112580-113916.gi%7C284083438%7Cgb%7CEFC37141%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085981%7Cgb%7CEFC39661%2E1%7C.for.112604-113919.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112604-113919.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112604-113919.gi%7C284085981%7Cgb%7CEFC39661%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089356%7Cgb%7CEFC43014%2E1%7C.for.112604-113919.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112604-113919.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112604-113919.gi%7C284089356%7Cgb%7CEFC43014%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094385%7Cgb%7CEFC48019%2E1%7C.for.113740-114929.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.113740-114929.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.113740-114929.gi%7C284094385%7Cgb%7CEFC48019%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097074%7Cgb%7CEFC50701%2E1%7C.for.115749-116791.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.115749-116791.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.115749-116791.gi%7C284097074%7Cgb%7CEFC50701%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084567%7Cgb%7CEFC38258%2E1%7C.for.115767-116794.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.115767-116794.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.115767-116794.gi%7C284084567%7Cgb%7CEFC38258%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093075%7Cgb%7CEFC46714%2E1%7C.for.130730-131943.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.130730-131943.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.130730-131943.gi%7C284093075%7Cgb%7CEFC46714%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090726%7Cgb%7CEFC44376%2E1%7C.for.139599-140995.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.139599-140995.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.139599-140995.gi%7C284090726%7Cgb%7CEFC44376%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:28 now processing 0 total clusters:28 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:28 now processing 0 total clusters:28 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.2386-3323.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.2386-3323.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.2386-3323.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.4485-6383.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.4485-6383.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.4485-6383.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.10364-11603.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.10364-11603.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.10364-11603.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.13401-14596.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.13401-14596.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.13401-14596.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.14972-16185.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.14972-16185.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.14972-16185.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.16376-18209.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.16376-18209.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.16376-18209.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.24975-26936.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.24975-26936.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.24975-26936.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.29677-30675.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.29677-30675.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.29677-30675.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.30959-31899.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.30959-31899.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.30959-31899.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.37033-43142.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.37033-43142.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.37033-43142.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.43430-44354.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.43430-44354.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.43430-44354.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.44431-46153.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.44431-46153.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.44431-46153.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.49726-51084.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.49726-51084.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.49726-51084.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.53724-54799.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.53724-54799.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.53724-54799.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.65858-68188.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.65858-68188.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.65858-68188.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.73071-73981.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.73071-73981.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.73071-73981.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.75107-78579.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.75107-78579.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.75107-78579.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.79887-81431.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.79887-81431.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.79887-81431.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.82420-83213.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.82420-83213.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.82420-83213.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.83308-86650.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.83308-86650.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.83308-86650.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.88601-90636.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.88601-90636.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.88601-90636.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.94042-95153.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.94042-95153.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.94042-95153.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.96704-97341.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.96704-97341.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.96704-97341.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.103144-104059.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.103144-104059.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.103144-104059.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.104997-105709.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.104997-105709.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.104997-105709.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.109946-111603.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.109946-111603.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.109946-111603.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.111961-114729.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.111961-114729.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.111961-114729.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.116362-117427.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.116362-117427.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.116362-117427.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.130710-132750.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.130710-132750.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.130710-132750.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.134159-136008.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.134159-136008.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.134159-136008.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.137661-141244.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.137661-141244.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.137661-141244.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.146931-148064.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.146931-148064.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.146931-148064.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.149294-151051.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.149294-151051.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.149294-151051.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.7226-9418.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.7226-9418.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.7226-9418.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.14321-15313.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.14321-15313.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.14321-15313.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.17914-20853.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.17914-20853.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.17914-20853.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.21355-22628.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.21355-22628.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.21355-22628.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.23480-24102.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.23480-24102.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.23480-24102.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.26561-29401.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.26561-29401.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.26561-29401.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.30377-31023.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.30377-31023.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.30377-31023.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/40_0.34142-36419.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/40_0.34142-36419.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/40_0.34142-36419.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/41_0.56529-59133.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/41_0.56529-59133.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/41_0.56529-59133.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/42_0.67815-70165.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/42_0.67815-70165.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/42_0.67815-70165.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/43_0.70338-72011.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/43_0.70338-72011.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/43_0.70338-72011.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/44_0.73731-74994.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/44_0.73731-74994.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/44_0.73731-74994.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/45_0.78575-79699.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/45_0.78575-79699.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/45_0.78575-79699.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/46_0.87346-88694.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/46_0.87346-88694.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/46_0.87346-88694.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/47_0.91308-92448.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/47_0.91308-92448.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/47_0.91308-92448.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/48_0.97683-99010.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/48_0.97683-99010.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/48_0.97683-99010.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/49_0.103986-105137.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/49_0.103986-105137.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/49_0.103986-105137.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/50_0.108244-109905.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/50_0.108244-109905.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/50_0.108244-109905.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/51_0.115948-116594.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/51_0.115948-116594.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/51_0.115948-116594.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/52_0.118285-119234.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/52_0.118285-119234.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/52_0.118285-119234.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/53_0.124122-129661.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/53_0.124122-129661.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/53_0.124122-129661.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/54_0.132987-134173.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/54_0.132987-134173.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/54_0.132987-134173.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/55_0.141626-144037.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/55_0.141626-144037.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/55_0.141626-144037.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/56_0.150698-152373.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/56_0.150698-152373.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/56_0.150698-152373.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C42 Length: 76433 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:3 current j:0 j_size:3 current j:1 j_size:3 current j:2 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C42.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C42.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:9 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:27 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:28 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:27 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:27 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:32 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:22 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:22 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:26 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:26 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7774%7C030702kazb008692ht.for.1-1406.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1-1406.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1-1406.Ar_EST_120301b_rep_c7774%7C030702kazb008692ht.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18851%7C---NA---.for.1-940.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1-940.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1-940.Ar_EST_120301b_c18851%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19024%7C---NA---.for.1-970.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1-970.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1-970.Ar_EST_120301b_c19024%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18770%7Cloc407698.for.1-1451.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1-1451.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1-1451.Ar_EST_120301b_rep_c18770%7Cloc407698.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4948%7Cmyosin.for.10321-12607.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.10321-12607.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.10321-12607.Ar_EST_120301b_rep_c4948%7Cmyosin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19625%7Cgtp-binding.for.8546-9603.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.8546-9603.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.8546-9603.Ar_EST_120301b_rep_c19625%7Cgtp-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5732%7Cm.for.9794-11275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.9794-11275.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.9794-11275.Ar_EST_120301b_rep_c5732%7Cm.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17320%7Cheavy.for.9960-11233.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.9960-11233.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.9960-11233.Ar_EST_120301b_rep_c17320%7Cheavy.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11257%7Cmyosin.for.8686-9748.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.8686-9748.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.8686-9748.Ar_EST_120301b_rep_c11257%7Cmyosin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14762%7Cmyosin.for.13210-14193.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.13210-14193.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.13210-14193.Ar_EST_120301b_c14762%7Cmyosin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig338%7Cmyosin.for.7890-13060.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.7890-13060.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.7890-13060.120301b_Contig338%7Cmyosin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20010%7Cpt030.for.10412-11566.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.10412-11566.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.10412-11566.Ar_EST_120301b_rep_c20010%7Cpt030.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13599%7Ceps15l1.for.8928-10003.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.8928-10003.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.8928-10003.Ar_EST_120301b_rep_c13599%7Ceps15l1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c280%7Ca.for.11708-14561.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.11708-14561.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.11708-14561.Ar_EST_120301b_c280%7Ca.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5072%7Cmyosin.for.7911-10427.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.7911-10427.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.7911-10427.Ar_EST_120301b_rep_c5072%7Cmyosin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9109%7Cinositol-pentakisphosphate.for.14767-16470.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.14767-16470.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.14767-16470.Ar_EST_120301b_c9109%7Cinositol-pentakisphosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2562%7Camino.for.16482-18275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.16482-18275.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.16482-18275.Ar_EST_120301b_c2562%7Camino.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2007%7Camino.for.15884-17370.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.15884-17370.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.15884-17370.Ar_EST_120301b_c2007%7Camino.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11326%7Chypothetical.for.16353-17413.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.16353-17413.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.16353-17413.Ar_EST_120301b_c11326%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12013%7Ccytochrome.for.19357-20363.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.19357-20363.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.19357-20363.Ar_EST_120301b_rep_c12013%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13656%7Crrp12-like.for.21547-22901.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.21547-22901.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.21547-22901.Ar_EST_120301b_c13656%7Crrp12-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8608%7Cnuc173-domain-containing.for.23818-25377.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.23818-25377.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.23818-25377.Ar_EST_120301b_c8608%7Cnuc173-domain-containing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9977%7Crrp12-like.for.24622-26076.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.24622-26076.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.24622-26076.Ar_EST_120301b_c9977%7Crrp12-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15839%7Clucilia.for.27768-29114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.27768-29114.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.27768-29114.Ar_EST_120301b_c15839%7Clucilia.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig969%7Cstructural.for.33495-35407.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.33495-35407.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.33495-35407.120301b_Contig969%7Cstructural.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8672%7Ccondensin.for.34640-36040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.34640-36040.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.34640-36040.Ar_EST_120301b_c8672%7Ccondensin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11535%7Ce3.for.39167-40542.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.39167-40542.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.39167-40542.Ar_EST_120301b_c11535%7Ce3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13262%7Cunnamed.for.39805-41097.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.39805-41097.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.39805-41097.Ar_EST_120301b_c13262%7Cunnamed.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11312%7Cpoly%28adp-ribose%29.for.40444-41924.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.40444-41924.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.40444-41924.Ar_EST_120301b_c11312%7Cpoly%28adp-ribose%29.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19596%7Chypothetical.for.42045-43366.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42045-43366.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42045-43366.Ar_EST_120301b_c19596%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7308%7Cunnamed.for.42244-43364.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42244-43364.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42244-43364.Ar_EST_120301b_rep_c7308%7Cunnamed.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig325%7Cregulatory.for.42802-44973.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42802-44973.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42802-44973.120301b_Contig325%7Cregulatory.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11048%7C26s.for.42818-43974.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42818-43974.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42818-43974.Ar_EST_120301b_rep_c11048%7C26s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7492%7Cconserved.for.45877-46991.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45877-46991.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45877-46991.Ar_EST_120301b_rep_c7492%7Cconserved.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7479%7Cagn_rnc.for.45989-47063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45989-47063.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45989-47063.Ar_EST_120301b_rep_c7479%7Cagn_rnc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7508%7Cagn_rnc.for.45857-46841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45857-46841.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45857-46841.Ar_EST_120301b_rep_c7508%7Cagn_rnc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7480%7Cagn_rnc.for.46091-47455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46091-47455.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46091-47455.Ar_EST_120301b_rep_c7480%7Cagn_rnc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7509%7Cmucin.for.45434-46641.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45434-46641.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45434-46641.Ar_EST_120301b_rep_c7509%7Cmucin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig982%7Cras-related.for.45341-46536.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45341-46536.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45341-46536.120301b_Contig982%7Cras-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig343%7Cson.for.45134-47099.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45134-47099.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45134-47099.120301b_Contig343%7Cson.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5597%7Ccre-clec-202.for.45109-46960.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45109-46960.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45109-46960.Ar_EST_120301b_rep_c5597%7Ccre-clec-202.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7743%7Ccapg.for.45109-46400.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45109-46400.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45109-46400.Ar_EST_120301b_rep_c7743%7Ccapg.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7494%7Chypothetical.for.46415-47555.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46415-47555.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46415-47555.Ar_EST_120301b_rep_c7494%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16710%7Cascaris.for.46415-47537.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46415-47537.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46415-47537.Ar_EST_120301b_rep_c16710%7Cascaris.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19414%7Clusgc1ng-rp-234_a03_02apr2007_031.for.46639-47581.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46639-47581.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46639-47581.Ar_EST_120301b_rep_c19414%7Clusgc1ng-rp-234_a03_02apr2007_031.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7511%7C454.for.45483-46453.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45483-46453.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45483-46453.Ar_EST_120301b_rep_c7511%7C454.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6388%7Cglycoside.for.45638-46638.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45638-46638.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45638-46638.Ar_EST_120301b_rep_c6388%7Cglycoside.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19937%7Cseverin.for.45116-46100.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45116-46100.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45116-46100.Ar_EST_120301b_rep_c19937%7Cseverin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7495%7Cagn_rnc.for.46158-47433.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46158-47433.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46158-47433.Ar_EST_120301b_rep_c7495%7Cagn_rnc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7483%7C---NA---.for.46372-47433.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46372-47433.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46372-47433.Ar_EST_120301b_rep_c7483%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5806%7Cagn_rnc.for.45932-46941.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45932-46941.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45932-46941.Ar_EST_120301b_rep_c5806%7Cagn_rnc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7496%7Cc08024b04sk.for.45501-46672.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45501-46672.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45501-46672.Ar_EST_120301b_rep_c7496%7Cc08024b04sk.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16396%7Cglycoprotein.for.45482-46646.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45482-46646.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45482-46646.Ar_EST_120301b_rep_c16396%7Cglycoprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13573%7Cconserved.for.45147-46240.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45147-46240.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45147-46240.Ar_EST_120301b_rep_c13573%7Cconserved.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20339%7Cprotein.for.45144-46424.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45144-46424.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45144-46424.Ar_EST_120301b_rep_c20339%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig316%7Cpf11-1.for.45115-47057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45115-47057.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45115-47057.120301b_Contig316%7Cpf11-1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7487%7Cagn_rnc.for.46182-47595.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46182-47595.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46182-47595.Ar_EST_120301b_rep_c7487%7Cagn_rnc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6183%7Cpf11-1.for.45491-47522.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45491-47522.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45491-47522.Ar_EST_120301b_rep_c6183%7Cpf11-1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14545%7Chypothetical.for.45965-47068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45965-47068.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45965-47068.Ar_EST_120301b_rep_c14545%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1387%7Cpf11-1.for.45128-47072.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45128-47072.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45128-47072.120301b_Contig1387%7Cpf11-1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7470%7Cdc961434.for.45674-46577.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45674-46577.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45674-46577.Ar_EST_120301b_rep_c7470%7Cdc961434.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14022%7Chypothetical.for.46393-47555.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46393-47555.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46393-47555.Ar_EST_120301b_rep_c14022%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7500%7Cagn_rnc.for.45877-46957.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45877-46957.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45877-46957.Ar_EST_120301b_rep_c7500%7Cagn_rnc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7489%7Cagn_rnc.for.45655-46926.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45655-46926.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45655-46926.Ar_EST_120301b_rep_c7489%7Cagn_rnc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7476%7Cagn_rnc.for.46159-47569.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46159-47569.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46159-47569.Ar_EST_120301b_rep_c7476%7Cagn_rnc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7112%7Clikely.for.45218-47099.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45218-47099.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45218-47099.Ar_EST_120301b_rep_c7112%7Clikely.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7490%7Cpf11-1.for.45848-47172.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45848-47172.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45848-47172.Ar_EST_120301b_rep_c7490%7Cpf11-1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7505%7Cserine.for.45942-47187.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45942-47187.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45942-47187.Ar_EST_120301b_rep_c7505%7Cserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7044%7Cbw637335.for.45144-46373.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45144-46373.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45144-46373.Ar_EST_120301b_rep_c7044%7Cbw637335.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4836%7Cpf11-1.for.45128-47522.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45128-47522.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45128-47522.Ar_EST_120301b_rep_c4836%7Cpf11-1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6893%7Cpf11-1.for.45110-47063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45110-47063.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45110-47063.Ar_EST_120301b_rep_c6893%7Cpf11-1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17766%7C60s.for.45811-47072.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45811-47072.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45811-47072.Ar_EST_120301b_rep_c17766%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4017%7Ccre-clec-202.for.45109-46943.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45109-46943.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45109-46943.Ar_EST_120301b_rep_c4017%7Ccre-clec-202.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7092%7Chypothetical.for.45110-46243.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45110-46243.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45110-46243.Ar_EST_120301b_rep_c7092%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20418%7Cdc981051.for.45137-46306.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45137-46306.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45137-46306.Ar_EST_120301b_rep_c20418%7Cdc981051.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4416%7Cmannose-1-phosphate.for.48178-50188.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.48178-50188.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.48178-50188.Ar_EST_120301b_rep_c4416%7Cmannose-1-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10906%7Cset.for.49734-51197.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.49734-51197.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.49734-51197.Ar_EST_120301b_c10906%7Cset.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16929%7C---NA---.for.51104-52524.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.51104-52524.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.51104-52524.Ar_EST_120301b_c16929%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1490%7Cagencourt_54728430.for.51937-53332.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.51937-53332.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.51937-53332.Ar_EST_120301b_c1490%7Cagencourt_54728430.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c990%7Ccaau.for.53479-54807.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.53479-54807.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.53479-54807.Ar_EST_120301b_c990%7Ccaau.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1347%7C---NA---.for.53147-54553.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.53147-54553.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.53147-54553.120301b_Contig1347%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5238%7C---NA---.for.53147-54491.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.53147-54491.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.53147-54491.Ar_EST_120301b_rep_c5238%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1370%7Cubiquitin.for.53182-54304.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.53182-54304.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.53182-54304.120301b_Contig1370%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c572%7Cfra0980.for.54258-55665.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.54258-55665.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.54258-55665.Ar_EST_120301b_c572%7Cfra0980.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c824%7C---NA---.for.54999-56346.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.54999-56346.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.54999-56346.Ar_EST_120301b_c824%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14096%7Cprotein.for.59864-61124.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59864-61124.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59864-61124.Ar_EST_120301b_c14096%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16701%7Celongation.for.63503-64957.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.63503-64957.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.63503-64957.Ar_EST_120301b_c16701%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14311%7Cmajor.for.65108-66195.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.65108-66195.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.65108-66195.Ar_EST_120301b_c14311%7Cmajor.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10866%7Cpiggybac.for.67346-69111.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.67346-69111.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.67346-69111.Ar_EST_120301b_c10866%7Cpiggybac.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8355%7Cpiggybac.for.67322-68937.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.67322-68937.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.67322-68937.Ar_EST_120301b_c8355%7Cpiggybac.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9544%7Cmlp2991.for.72162-73645.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.72162-73645.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.72162-73645.Ar_EST_120301b_c9544%7Cmlp2991.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10994%7Cct751907.for.75607-76433.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.75607-76433.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.75607-76433.Ar_EST_120301b_c10994%7Cct751907.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:33 now processing 0 total clusters:33 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:33 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 ...processing 0 of 22 ...processing 1 of 22 ...processing 2 of 22 ...processing 3 of 22 ...processing 4 of 22 ...processing 5 of 22 ...processing 6 of 22 ...processing 7 of 22 ...processing 8 of 22 ...processing 9 of 22 ...processing 10 of 22 ...processing 11 of 22 ...processing 12 of 22 ...processing 13 of 22 ...processing 14 of 22 ...processing 15 of 22 ...processing 16 of 22 ...processing 17 of 22 ...processing 18 of 22 ...processing 19 of 22 ...processing 20 of 22 ...processing 21 of 22 total clusters:33 now processing 0 total clusters:33 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:22 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:11 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:15 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:20 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:24 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:20 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:26 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:15 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:12 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:14 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084885%7Cgb%7CEFC38573%2E1%7C.for.1773-3681.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1773-3681.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1773-3681.gi%7C284084885%7Cgb%7CEFC38573%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085553%7Cgb%7CEFC39236%2E1%7C.for.7920-14466.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.7920-14466.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.7920-14466.gi%7C284085553%7Cgb%7CEFC39236%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094451%7Cgb%7CEFC48085%2E1%7C.for.7932-14460.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.7932-14460.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.7932-14460.gi%7C284094451%7Cgb%7CEFC48085%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084972%7Cgb%7CEFC38659%2E1%7C.for.16062-18301.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.16062-18301.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.16062-18301.gi%7C284084972%7Cgb%7CEFC38659%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089951%7Cgb%7CEFC43605%2E1%7C.for.16209-18235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.16209-18235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.16209-18235.gi%7C284089951%7Cgb%7CEFC43605%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096115%7Cgb%7CEFC49744%2E1%7C.for.17570-19460.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.17570-19460.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.17570-19460.gi%7C284096115%7Cgb%7CEFC49744%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096480%7Cgb%7CEFC50108%2E1%7C.for.19232-20352.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.19232-20352.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.19232-20352.gi%7C284096480%7Cgb%7CEFC50108%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096114%7Cgb%7CEFC49743%2E1%7C.for.31950-36420.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.31950-36420.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.31950-36420.gi%7C284096114%7Cgb%7CEFC49743%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084943%7Cgb%7CEFC38631%2E1%7C.for.31962-36417.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.31962-36417.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.31962-36417.gi%7C284084943%7Cgb%7CEFC38631%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091903%7Cgb%7CEFC45547%2E1%7C.for.37513-38519.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.37513-38519.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.37513-38519.gi%7C284091903%7Cgb%7CEFC45547%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096119%7Cgb%7CEFC49748%2E1%7C.for.40644-42565.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.40644-42565.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.40644-42565.gi%7C284096119%7Cgb%7CEFC49748%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092250%7Cgb%7CEFC45893%2E1%7C.for.43363-44942.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43363-44942.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43363-44942.gi%7C284092250%7Cgb%7CEFC45893%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082802%7Cgb%7CEFC36513%2E1%7C.for.43363-44861.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43363-44861.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43363-44861.gi%7C284082802%7Cgb%7CEFC36513%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083285%7Cgb%7CEFC36990%2E1%7C.for.43231-44915.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43231-44915.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43231-44915.gi%7C284083285%7Cgb%7CEFC36990%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086815%7Cgb%7CEFC40489%2E1%7C.for.42949-44954.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42949-44954.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42949-44954.gi%7C284086815%7Cgb%7CEFC40489%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095107%7Cgb%7CEFC48739%2E1%7C.for.43381-44933.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43381-44933.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43381-44933.gi%7C284095107%7Cgb%7CEFC48739%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092145%7Cgb%7CEFC45788%2E1%7C.for.43324-44894.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43324-44894.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43324-44894.gi%7C284092145%7Cgb%7CEFC45788%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086643%7Cgb%7CEFC40318%2E1%7C.for.43342-44903.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43342-44903.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43342-44903.gi%7C284086643%7Cgb%7CEFC40318%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090736%7Cgb%7CEFC44386%2E1%7C.for.43339-44951.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43339-44951.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43339-44951.gi%7C284090736%7Cgb%7CEFC44386%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089920%7Cgb%7CEFC43575%2E1%7C.for.43186-44918.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43186-44918.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43186-44918.gi%7C284089920%7Cgb%7CEFC43575%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089547%7Cgb%7CEFC43204%2E1%7C.for.43201-44921.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43201-44921.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43201-44921.gi%7C284089547%7Cgb%7CEFC43204%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084479%7Cgb%7CEFC38171%2E1%7C.for.48200-50161.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.48200-50161.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.48200-50161.gi%7C284084479%7Cgb%7CEFC38171%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097121%7Cgb%7CEFC50748%2E1%7C.for.48200-50161.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.48200-50161.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.48200-50161.gi%7C284097121%7Cgb%7CEFC50748%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095513%7Cgb%7CEFC49143%2E1%7C.for.59486-60759.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59486-60759.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59486-60759.gi%7C284095513%7Cgb%7CEFC49143%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091174%7Cgb%7CEFC44822%2E1%7C.for.59498-60747.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59498-60747.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59498-60747.gi%7C284091174%7Cgb%7CEFC44822%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096632%7Cgb%7CEFC50259%2E1%7C.for.59504-60747.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59504-60747.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59504-60747.gi%7C284096632%7Cgb%7CEFC50259%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096631%7Cgb%7CEFC50258%2E1%7C.for.56274-60438.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.56274-60438.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.56274-60438.gi%7C284096631%7Cgb%7CEFC50258%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091239%7Cgb%7CEFC44887%2E1%7C.for.59486-60744.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59486-60744.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59486-60744.gi%7C284091239%7Cgb%7CEFC44887%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087686%7Cgb%7CEFC41354%2E1%7C.for.56064-60891.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.56064-60891.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.56064-60891.gi%7C284087686%7Cgb%7CEFC41354%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089822%7Cgb%7CEFC43477%2E1%7C.for.62094-65123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.62094-65123.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.62094-65123.gi%7C284089822%7Cgb%7CEFC43477%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082936%7Cgb%7CEFC36645%2E1%7C.for.64707-66232.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.64707-66232.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.64707-66232.gi%7C284082936%7Cgb%7CEFC36645%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:11 now processing 0 total clusters:11 now processing 0 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:9 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:16 now processing 0 total clusters:16 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 ...processing 0 of 2 ...processing 1 of 2 total clusters:16 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 ...processing 0 of 19 ...processing 1 of 19 ...processing 2 of 19 ...processing 3 of 19 ...processing 4 of 19 ...processing 5 of 19 ...processing 6 of 19 ...processing 7 of 19 ...processing 8 of 19 ...processing 9 of 19 ...processing 10 of 19 ...processing 11 of 19 ...processing 12 of 19 ...processing 13 of 19 ...processing 14 of 19 ...processing 15 of 19 ...processing 16 of 19 ...processing 17 of 19 ...processing 18 of 19 total clusters:16 now processing 0 total clusters:16 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.274-1263.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.274-1263.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.274-1263.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.8848-9548.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.8848-9548.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.8848-9548.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.14966-16270.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.14966-16270.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.14966-16270.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.21746-22701.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.21746-22701.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.21746-22701.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.24017-25876.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.24017-25876.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.24017-25876.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.32149-36220.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.32149-36220.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.32149-36220.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.39366-40342.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.39366-40342.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.39366-40342.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.43001-44777.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.43001-44777.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.43001-44777.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.45867-47168.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.45867-47168.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.45867-47168.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.48367-49988.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.48367-49988.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.48367-49988.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.51249-53132.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.51249-53132.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.51249-53132.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.56263-60924.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.56263-60924.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.56263-60924.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.67521-68911.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.67521-68911.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.67521-68911.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.72361-73478.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.72361-73478.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.72361-73478.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.90-631.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.90-631.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.90-631.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.8089-14361.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.8089-14361.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.8089-14361.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.16083-19260.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.16083-19260.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.16083-19260.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.19431-20152.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.19431-20152.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.19431-20152.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.27967-28914.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.27967-28914.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.27967-28914.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.40004-43176.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.40004-43176.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.40004-43176.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.45295-47426.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.45295-47426.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.45295-47426.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.49931-50997.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.49931-50997.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.49931-50997.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.53346-56146.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.53346-56146.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.53346-56146.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.62293-66032.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.62293-66032.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.62293-66032.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C43 Length: 92164 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:2 current j:0 j_size:2 current j:1 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C43.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C43.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:5 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17092%7Cfp188883.for.3526-4473.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.3526-4473.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.3526-4473.Ar_EST_120301b_c17092%7Cfp188883.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13677%7Cccab.for.5252-6612.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.5252-6612.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.5252-6612.Ar_EST_120301b_c13677%7Cccab.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14518%7Cct749901.for.7990-9313.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.7990-9313.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.7990-9313.Ar_EST_120301b_c14518%7Cct749901.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9288%7Cam569745.for.7381-8837.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.7381-8837.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.7381-8837.Ar_EST_120301b_c9288%7Cam569745.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4141%7Cand.for.9566-11196.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.9566-11196.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.9566-11196.Ar_EST_120301b_rep_c4141%7Cand.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6063%7Cand.for.9750-11028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.9750-11028.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.9750-11028.Ar_EST_120301b_rep_c6063%7Cand.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15157%7Cfs534783.for.12578-13795.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.12578-13795.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.12578-13795.Ar_EST_120301b_c15157%7Cfs534783.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17200%7Ctetratricopeptide.for.13047-14232.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.13047-14232.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.13047-14232.Ar_EST_120301b_c17200%7Ctetratricopeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13584%7Cpinus.for.14744-15962.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.14744-15962.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.14744-15962.Ar_EST_120301b_c13584%7Cpinus.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3070%7C---NA---.for.14732-16014.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.14732-16014.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.14732-16014.Ar_EST_120301b_c3070%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9766%7Cperoxiredoxin.for.17496-18964.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.17496-18964.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.17496-18964.Ar_EST_120301b_c9766%7Cperoxiredoxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10584%7Ccytochrome.for.18605-19915.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.18605-19915.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.18605-19915.Ar_EST_120301b_c10584%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig463%7Calcohol.for.19343-21211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.19343-21211.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.19343-21211.120301b_Contig463%7Calcohol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4099%7Calcohol.for.19322-21212.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.19322-21212.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.19322-21212.Ar_EST_120301b_rep_c4099%7Calcohol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18166%7Ccopper.for.23025-24216.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.23025-24216.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.23025-24216.Ar_EST_120301b_c18166%7Ccopper.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9326%7Cabc.for.25002-26391.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.25002-26391.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.25002-26391.Ar_EST_120301b_c9326%7Cabc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12338%7Cabc.for.26196-27884.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26196-27884.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26196-27884.Ar_EST_120301b_c12338%7Cabc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7977%7Cprotein.for.28339-30585.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.28339-30585.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.28339-30585.Ar_EST_120301b_c7977%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13552%7Ccytochrome.for.30161-31786.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.30161-31786.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.30161-31786.Ar_EST_120301b_c13552%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1677%7Crhogef.for.33450-34814.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.33450-34814.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.33450-34814.Ar_EST_120301b_c1677%7Crhogef.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20340%7Cmembrane.for.32541-33655.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.32541-33655.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.32541-33655.Ar_EST_120301b_rep_c20340%7Cmembrane.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1340%7Crhogef.for.31943-34641.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.31943-34641.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.31943-34641.120301b_Contig1340%7Crhogef.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3406%7Cnucleoside-diphosphate-sugar.for.35037-36828.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.35037-36828.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.35037-36828.Ar_EST_120301b_c3406%7Cnucleoside-diphosphate-sugar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8532%7Cau287079.for.37076-38097.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.37076-38097.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.37076-38097.Ar_EST_120301b_c8532%7Cau287079.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12209%7Cacetyl-.for.38502-39630.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.38502-39630.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.38502-39630.Ar_EST_120301b_c12209%7Cacetyl-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18018%7C---NA---.for.39325-40402.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.39325-40402.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.39325-40402.Ar_EST_120301b_c18018%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12991%7Calpha-tubulin.for.40091-41311.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.40091-41311.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.40091-41311.Ar_EST_120301b_rep_c12991%7Calpha-tubulin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17425%7Crapamycin.for.44284-45658.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.44284-45658.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.44284-45658.Ar_EST_120301b_rep_c17425%7Crapamycin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16058%7Cserine.for.45035-46459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.45035-46459.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.45035-46459.Ar_EST_120301b_c16058%7Cserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2918%7Cphosphatidylinositol.for.46079-47673.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.46079-47673.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.46079-47673.Ar_EST_120301b_c2918%7Cphosphatidylinositol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18515%7Cprotein.for.47799-49079.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.47799-49079.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.47799-49079.Ar_EST_120301b_c18515%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12339%7Cphosphatidylinositol.for.48446-49831.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.48446-49831.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.48446-49831.Ar_EST_120301b_c12339%7Cphosphatidylinositol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10083%7Ctor.for.50097-52131.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.50097-52131.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.50097-52131.Ar_EST_120301b_c10083%7Ctor.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17125%7Cfk506.for.51445-52972.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.51445-52972.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.51445-52972.Ar_EST_120301b_c17125%7Cfk506.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c609%7Ctranslation.for.55264-57136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.55264-57136.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.55264-57136.Ar_EST_120301b_c609%7Ctranslation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16114%7Cpentein-type.for.56590-57910.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.56590-57910.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.56590-57910.Ar_EST_120301b_c16114%7Cpentein-type.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15590%7Cggdef.for.59052-60296.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.59052-60296.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.59052-60296.Ar_EST_120301b_c15590%7Cggdef.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11620%7Chypothetical.for.59484-60929.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.59484-60929.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.59484-60929.Ar_EST_120301b_c11620%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16515%7C---NA---.for.60825-62078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.60825-62078.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.60825-62078.Ar_EST_120301b_c16515%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4560%7Cmember.for.62938-64381.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.62938-64381.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.62938-64381.Ar_EST_120301b_rep_c4560%7Cmember.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20266%7Cdrug.for.61501-63752.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.61501-63752.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.61501-63752.Ar_EST_120301b_c20266%7Cdrug.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5804%7Cbeta-arrestin.for.64403-66155.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.64403-66155.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.64403-66155.Ar_EST_120301b_rep_c5804%7Cbeta-arrestin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6687%7Cpredicted.for.64370-65546.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.64370-65546.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.64370-65546.Ar_EST_120301b_rep_c6687%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4372%7Cbeta-arrestin.for.64168-66155.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.64168-66155.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.64168-66155.Ar_EST_120301b_rep_c4372%7Cbeta-arrestin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13910%7C---NA---.for.64304-65220.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.64304-65220.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.64304-65220.Ar_EST_120301b_rep_c13910%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2549%7Cthioredoxin.for.66566-68310.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.66566-68310.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.66566-68310.Ar_EST_120301b_c2549%7Cthioredoxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15315%7Crna-binding.for.67791-68961.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.67791-68961.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.67791-68961.Ar_EST_120301b_c15315%7Crna-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2976%7Crna-binding.for.68438-70469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.68438-70469.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.68438-70469.Ar_EST_120301b_c2976%7Crna-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3634%7Czz-type.for.70147-71611.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.70147-71611.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.70147-71611.Ar_EST_120301b_c3634%7Czz-type.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2887%7Cubiquitin-associated.for.70584-72038.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.70584-72038.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.70584-72038.Ar_EST_120301b_c2887%7Cubiquitin-associated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig323%7Ctubulin.for.73278-75377.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73278-75377.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73278-75377.120301b_Contig323%7Ctubulin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15599%7Cpopulus.for.74929-76348.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.74929-76348.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.74929-76348.Ar_EST_120301b_c15599%7Cpopulus.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7031%7Cheat.for.76336-77895.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.76336-77895.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.76336-77895.Ar_EST_120301b_rep_c7031%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16987%7Cflagellar.for.77326-78609.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.77326-78609.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.77326-78609.Ar_EST_120301b_c16987%7Cflagellar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9635%7Cgdp-man%3Aman.for.79655-81480.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.79655-81480.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.79655-81480.Ar_EST_120301b_c9635%7Cgdp-man%3Aman.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19551%7Caspargine-linked.for.80083-81464.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.80083-81464.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.80083-81464.Ar_EST_120301b_c19551%7Caspargine-linked.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1696%7Ctrna.for.81261-82761.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.81261-82761.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.81261-82761.Ar_EST_120301b_c1696%7Ctrna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7744%7Cprotein.for.81867-83835.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.81867-83835.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.81867-83835.Ar_EST_120301b_c7744%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18655%7Cmethyltransferase.for.82807-84315.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.82807-84315.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.82807-84315.Ar_EST_120301b_c18655%7Cmethyltransferase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19904%7Cmethyltransferase.for.82712-84249.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.82712-84249.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.82712-84249.Ar_EST_120301b_c19904%7Cmethyltransferase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig233%7Cphospholipase.for.86209-88251.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.86209-88251.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.86209-88251.120301b_Contig233%7Cphospholipase.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:40 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:38 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:38 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:38 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:30 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:49 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:38 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:31 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:40 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:41 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:36 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097056%7Cgb%7CEFC50683%2E1%7C.for.9746-11154.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.9746-11154.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.9746-11154.gi%7C284097056%7Cgb%7CEFC50683%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090825%7Cgb%7CEFC44475%2E1%7C.for.21982-23057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.21982-23057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.21982-23057.gi%7C284090825%7Cgb%7CEFC44475%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084884%7Cgb%7CEFC38572%2E1%7C.for.25245-27535.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.25245-27535.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.25245-27535.gi%7C284084884%7Cgb%7CEFC38572%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090115%7Cgb%7CEFC43768%2E1%7C.for.25005-27712.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.25005-27712.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.25005-27712.gi%7C284090115%7Cgb%7CEFC43768%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085735%7Cgb%7CEFC39417%2E1%7C.for.24999-27664.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.24999-27664.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.24999-27664.gi%7C284085735%7Cgb%7CEFC39417%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096910%7Cgb%7CEFC50537%2E1%7C.for.26056-27625.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26056-27625.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26056-27625.gi%7C284096910%7Cgb%7CEFC50537%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096078%7Cgb%7CEFC49707%2E1%7C.for.26047-27437.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26047-27437.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26047-27437.gi%7C284096078%7Cgb%7CEFC49707%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094270%7Cgb%7CEFC47905%2E1%7C.for.26059-27559.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26059-27559.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26059-27559.gi%7C284094270%7Cgb%7CEFC47905%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083704%7Cgb%7CEFC37404%2E1%7C.for.24999-27673.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.24999-27673.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.24999-27673.gi%7C284083704%7Cgb%7CEFC37404%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094259%7Cgb%7CEFC47894%2E1%7C.for.24999-27682.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.24999-27682.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.24999-27682.gi%7C284094259%7Cgb%7CEFC47894%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094721%7Cgb%7CEFC48354%2E1%7C.for.26065-27559.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26065-27559.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26065-27559.gi%7C284094721%7Cgb%7CEFC48354%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082506%7Cgb%7CEFC36223%2E1%7C.for.28324-29819.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.28324-29819.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.28324-29819.gi%7C284082506%7Cgb%7CEFC36223%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089855%7Cgb%7CEFC43510%2E1%7C.for.28264-30386.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.28264-30386.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.28264-30386.gi%7C284089855%7Cgb%7CEFC43510%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081402%7Cgb%7CEFC35430%2E1%7C.for.42347-43347.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.42347-43347.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.42347-43347.gi%7C284081402%7Cgb%7CEFC35430%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096798%7Cgb%7CEFC50425%2E1%7C.for.43208-44964.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.43208-44964.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.43208-44964.gi%7C284096798%7Cgb%7CEFC50425%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088248%7Cgb%7CEFC41913%2E1%7C.for.44214-52634.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.44214-52634.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.44214-52634.gi%7C284088248%7Cgb%7CEFC41913%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084309%7Cgb%7CEFC38003%2E1%7C.for.55818-57080.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.55818-57080.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.55818-57080.gi%7C284084309%7Cgb%7CEFC38003%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084448%7Cgb%7CEFC38141%2E1%7C.for.55818-57092.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.55818-57092.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.55818-57092.gi%7C284084448%7Cgb%7CEFC38141%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092108%7Cgb%7CEFC45751%2E1%7C.for.56577-58330.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.56577-58330.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.56577-58330.gi%7C284092108%7Cgb%7CEFC45751%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088691%7Cgb%7CEFC42353%2E1%7C.for.57943-58856.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.57943-58856.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.57943-58856.gi%7C284088691%7Cgb%7CEFC42353%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091203%7Cgb%7CEFC44851%2E1%7C.for.61596-63641.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.61596-63641.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.61596-63641.gi%7C284091203%7Cgb%7CEFC44851%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083474%7Cgb%7CEFC37177%2E1%7C.for.61605-63584.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.61605-63584.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.61605-63584.gi%7C284083474%7Cgb%7CEFC37177%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083969%7Cgb%7CEFC37667%2E1%7C.for.61889-63587.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.61889-63587.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.61889-63587.gi%7C284083969%7Cgb%7CEFC37667%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096866%7Cgb%7CEFC50493%2E1%7C.for.63133-64462.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63133-64462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63133-64462.gi%7C284096866%7Cgb%7CEFC50493%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093204%7Cgb%7CEFC46843%2E1%7C.for.63169-64438.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63169-64438.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63169-64438.gi%7C284093204%7Cgb%7CEFC46843%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095151%7Cgb%7CEFC48783%2E1%7C.for.63118-64262.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63118-64262.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63118-64262.gi%7C284095151%7Cgb%7CEFC48783%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095231%7Cgb%7CEFC48862%2E1%7C.for.62968-64462.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.62968-64462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.62968-64462.gi%7C284095231%7Cgb%7CEFC48862%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095060%7Cgb%7CEFC48692%2E1%7C.for.63139-64462.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63139-64462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63139-64462.gi%7C284095060%7Cgb%7CEFC48692%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085175%7Cgb%7CEFC38861%2E1%7C.for.63148-64262.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63148-64262.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63148-64262.gi%7C284085175%7Cgb%7CEFC38861%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081592%7Cgb%7CEFC35538%2E1%7C.for.63118-64214.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63118-64214.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63118-64214.gi%7C284081592%7Cgb%7CEFC35538%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087063%7Cgb%7CEFC40735%2E1%7C.for.63145-64462.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63145-64462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63145-64462.gi%7C284087063%7Cgb%7CEFC40735%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089507%7Cgb%7CEFC43164%2E1%7C.for.63169-64262.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63169-64262.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63169-64262.gi%7C284089507%7Cgb%7CEFC43164%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092547%7Cgb%7CEFC46189%2E1%7C.for.67167-68206.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.67167-68206.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.67167-68206.gi%7C284092547%7Cgb%7CEFC46189%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093081%7Cgb%7CEFC46720%2E1%7C.for.70141-71237.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.70141-71237.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.70141-71237.gi%7C284093081%7Cgb%7CEFC46720%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091177%7Cgb%7CEFC44825%2E1%7C.for.70081-72452.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.70081-72452.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.70081-72452.gi%7C284091177%7Cgb%7CEFC44825%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096878%7Cgb%7CEFC50505%2E1%7C.for.72364-73424.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.72364-73424.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.72364-73424.gi%7C284096878%7Cgb%7CEFC50505%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C464854%7Csp%7CP34108%2E1%7CTBB_NAEGR.for.73326-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.gi%7C464854%7Csp%7CP34108%2E1%7CTBB_NAEGR.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086940%7Cgb%7CEFC40613%2E1%7C.for.73335-75325.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73335-75325.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73335-75325.gi%7C284086940%7Cgb%7CEFC40613%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C9737%7Cemb%7CCAA78362%2E1%7C.for.73326-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.gi%7C9737%7Cemb%7CCAA78362%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086828%7Cgb%7CEFC40502%2E1%7C.for.73287-74890.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73287-74890.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73287-74890.gi%7C284086828%7Cgb%7CEFC40502%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082800%7Cgb%7CEFC36511%2E1%7C.for.73326-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.gi%7C284082800%7Cgb%7CEFC36511%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086082%7Cgb%7CEFC39761%2E1%7C.for.73326-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.gi%7C284086082%7Cgb%7CEFC39761%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091464%7Cgb%7CEFC45110%2E1%7C.for.73278-75409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73278-75409.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73278-75409.gi%7C284091464%7Cgb%7CEFC45110%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084286%7Cgb%7CEFC37980%2E1%7C.for.73347-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73347-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73347-75412.gi%7C284084286%7Cgb%7CEFC37980%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C15082214%7Cgb%7CAAK84066%2E1%7CAF401641_1.for.74148-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.74148-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.74148-75412.gi%7C15082214%7Cgb%7CAAK84066%2E1%7CAF401641_1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C829213%7Cemb%7CCAA56940%2E1%7C.for.73326-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.gi%7C829213%7Cemb%7CCAA56940%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083707%7Cgb%7CEFC37407%2E1%7C.for.73320-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73320-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73320-75412.gi%7C284083707%7Cgb%7CEFC37407%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083068%7Cgb%7CEFC36775%2E1%7C.for.73326-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.gi%7C284083068%7Cgb%7CEFC36775%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084695%7Cgb%7CEFC38385%2E1%7C.for.73320-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73320-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73320-75412.gi%7C284084695%7Cgb%7CEFC38385%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094548%7Cgb%7CEFC48182%2E1%7C.for.77239-78596.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.77239-78596.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.77239-78596.gi%7C284094548%7Cgb%7CEFC48182%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094208%7Cgb%7CEFC47843%2E1%7C.for.79553-81709.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.79553-81709.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.79553-81709.gi%7C284094208%7Cgb%7CEFC47843%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:14 now processing 0 total clusters:14 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:12 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:27 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:27 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:27 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.7580-9113.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.7580-9113.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.7580-9113.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.17695-18764.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.17695-18764.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.17695-18764.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.35236-36628.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.35236-36628.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.35236-36628.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.40264-41111.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.40264-41111.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.40264-41111.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.43407-44764.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.43407-44764.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.43407-44764.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.56776-58130.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.56776-58130.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.56776-58130.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.61024-63552.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.61024-63552.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.61024-63552.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.70280-72252.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.70280-72252.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.70280-72252.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.3725-4273.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.3725-4273.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.3725-4273.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.5451-6412.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.5451-6412.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.5451-6412.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.9846-10954.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.9846-10954.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.9846-10954.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.12777-14032.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.12777-14032.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.12777-14032.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.14931-15844.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.14931-15844.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.14931-15844.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.18804-21022.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.18804-21022.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.18804-21022.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.23224-24016.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.23224-24016.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.23224-24016.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.25198-27684.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.25198-27684.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.25198-27684.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.28463-31586.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.28463-31586.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.28463-31586.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.32142-34623.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.32142-34623.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.32142-34623.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.44413-52772.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.44413-52772.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.44413-52772.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.59251-60729.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.59251-60729.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.59251-60729.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.63132-64321.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.63132-64321.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.63132-64321.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.64367-65955.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.64367-65955.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.64367-65955.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.66765-70269.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.66765-70269.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.66765-70269.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.72563-73227.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.72563-73227.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.72563-73227.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.73477-76148.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.73477-76148.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.73477-76148.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.77438-78411.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.77438-78411.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.77438-78411.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.79752-84119.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.79752-84119.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.79752-84119.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.86408-88051.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.86408-88051.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.86408-88051.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output Maker is now finished!!! [saneash at milou2 re-run0]$ From carsonhh at gmail.com Fri Jan 17 10:55:38 2014 From: carsonhh at gmail.com (Carson Holt) Date: Fri, 17 Jan 2014 10:55:38 -0700 Subject: [maker-devel] Problem with re-annotation In-Reply-To: References: Message-ID: Could you send me these two files. I put the full path below based on your STDERR report. Also this log was from the original run having the issue, and not a new repeated attempt at that one, correct? First file ?> /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_re dundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_1 30708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1/theVoid.AR_HYBRID_130 113_TINTIN_EF2ON_C1/AR_HYBRID_130113_TINTIN_EF2ON_C1.abinit_masked.0.run0%2E hmm.snap Second file ?> /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_re dundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_1 30708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1/AR_HYBRID_130113_TINT IN_EF2ON_C1.gff Thanks, Carson From: Sanea Sheikh Date: Thursday, January 16, 2014 at 3:52 AM To: , Carson Holt Subject: Fwd: [maker-devel] Problem with re-annotation Hello Carson Here it is. Sanea On Tue, Jan 14, 2014 at 1:39 AM, Carson Holt wrote: > Hi Sanea, > > There are no snap calls in your results. It?s as if SNAP never even ran. Did > you capture STDERR from your second run? If so can you send it to me. I just > want to see if it even shows SNAP as having run in the progress reports. > > Thanks, > Carson > > From: Sanea Sheikh > Date: Monday, January 13, 2014 at 2:17 AM > To: > Subject: [maker-devel] Problem with re-annotation > > Hello > > I am using Maker to annotate a genome for which I only have EST data and some > protein data. I ran Maker once using this EST and protein data (est2genome=1, > protein2genome=1). I had the Maker output. I combined all the GFF files for > all the contigs. I used the combined GFF file to train SNAP which gave me a > .hmm file. Now I modified the Maker opts control file. I provided the hmm file > in snap_hmm. I set est2genome=0 and protein2genome=0. I ran Maker again > assuming that now I have trained the gene predictor and I would have better > annotations. But now the output file that I get does not have Maker > annotation. I have attached the control files and the output file for the > re-run so you can have a look and let me know what I am doing wrong in order > to re-annotate the genome using the output from the previous run. > > Sanea > _______________________________________________ maker-devel mailing list > maker-devel at box290.bluehost.comhttp://box290.bluehost.com/mailman/listinfo/mak > er-devel_yandell-lab.org -------------- next part -------------- An HTML attachment was scrubbed... URL: From carsonhh at gmail.com Fri Jan 17 14:34:44 2014 From: carsonhh at gmail.com (Carson Holt) Date: Fri, 17 Jan 2014 14:34:44 -0700 Subject: [maker-devel] Problem with re-annotation In-Reply-To: References: Message-ID: The snap reports are empty, as if SNAP is never calling any genes even though it runs. Could you try running with a different HMM bundled with SNAP? Even though it?s not the right species, I just want to see if it will produce output under different circumstances. ?Carson From: Sanea Sheikh Date: Friday, January 17, 2014 at 12:21 PM To: Carson Holt Cc: Subject: Re: [maker-devel] Problem with re-annotation Hi Here are the two files that you asked for. The log was from a repeated attempt but the same issue was still there. I have attached the output from the repeated attempt as well so you can have a look at that. Sanea On Fri, Jan 17, 2014 at 6:55 PM, Carson Holt wrote: > Could you send me these two files. I put the full path below based on your > STDERR report. Also this log was from the original run having the issue, and > not a new repeated attempt at that one, correct? > > > First file ?> > /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redu > ndant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_13070 > 8_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1/theVoid.AR_HYBRID_130113_TI > NTIN_EF2ON_C1/AR_HYBRID_130113_TINTIN_EF2ON_C1.abinit_masked.0.run0%2Ehmm.snap > > > Second file ?> > /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redu > ndant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_13070 > 8_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1/AR_HYBRID_130113_TINTIN_EF2 > ON_C1.gff > > > Thanks, > Carson > > > From: Sanea Sheikh > Date: Thursday, January 16, 2014 at 3:52 AM > To: , Carson Holt > Subject: Fwd: [maker-devel] Problem with re-annotation > > Hello Carson > Here it is. > Sanea > > On Tue, Jan 14, 2014 at 1:39 AM, Carson Holt wrote: >> Hi Sanea, >> >> There are no snap calls in your results. It?s as if SNAP never even ran. >> Did you capture STDERR from your second run? If so can you send it to me. I >> just want to see if it even shows SNAP as having run in the progress reports. >> >> Thanks, >> Carson >> >> From: Sanea Sheikh >> Date: Monday, January 13, 2014 at 2:17 AM >> To: >> Subject: [maker-devel] Problem with re-annotation >> >> Hello >> >> I am using Maker to annotate a genome for which I only have EST data and some >> protein data. I ran Maker once using this EST and protein data (est2genome=1, >> protein2genome=1). I had the Maker output. I combined all the GFF files for >> all the contigs. I used the combined GFF file to train SNAP which gave me a >> .hmm file. Now I modified the Maker opts control file. I provided the hmm >> file in snap_hmm. I set est2genome=0 and protein2genome=0. I ran Maker again >> assuming that now I have trained the gene predictor and I would have better >> annotations. But now the output file that I get does not have Maker >> annotation. I have attached the control files and the output file for the >> re-run so you can have a look and let me know what I am doing wrong in order >> to re-annotate the genome using the output from the previous run. >> >> Sanea >> _______________________________________________ maker-devel mailing list >> maker-devel at box290.bluehost.comhttp://box290.bluehost.com/mailman/listinfo/ma >> ker-devel_yandell-lab.org > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From mike.thon at gmail.com Fri Jan 17 22:27:07 2014 From: mike.thon at gmail.com (Michael Thon) Date: Sat, 18 Jan 2014 06:27:07 +0100 Subject: [maker-devel] another maker re-annotation question Message-ID: <4BC8D8CA-A150-415D-9985-A2F5E758FDA9@gmail.com> We would like to re-run maker, keeping our locus IDs from a previous run, if possible. We added the old maker annotation in maker_gff and set everything else in the re-annotation section to 0. We also set map_forward=1. The output has gene annotations but the locus IDs were not transferred. I did some searching in the mailing list and it seems that our old annotation should be in model_gff. In that case do we need to strip out all the non-gene model features (match_part, etc) or can we leave it as is? Mike From dence at genetics.utah.edu Fri Jan 17 23:47:02 2014 From: dence at genetics.utah.edu (Daniel Ence) Date: Sat, 18 Jan 2014 06:47:02 +0000 Subject: [maker-devel] another maker re-annotation question In-Reply-To: <4BC8D8CA-A150-415D-9985-A2F5E758FDA9@gmail.com> References: <4BC8D8CA-A150-415D-9985-A2F5E758FDA9@gmail.com> Message-ID: Hi Mike, I am pretty sure that you need to strip out everything else. Just keep the "gene", "transcript" and "exon" features. Thanks, Daniel Daniel Ence Graduate Student Eccles Institute of Human Genetics University of Utah 15 North 2030 East, Room 2100 Salt Lake City, UT 84112-5330 ________________________________________ From: maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of Michael Thon [mike.thon at gmail.com] Sent: Friday, January 17, 2014 10:27 PM To: MAKER Subject: [maker-devel] another maker re-annotation question We would like to re-run maker, keeping our locus IDs from a previous run, if possible. We added the old maker annotation in maker_gff and set everything else in the re-annotation section to 0. We also set map_forward=1. The output has gene annotations but the locus IDs were not transferred. I did some searching in the mailing list and it seems that our old annotation should be in model_gff. In that case do we need to strip out all the non-gene model features (match_part, etc) or can we leave it as is? Mike _______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org From saneasheikh at gmail.com Fri Jan 17 12:21:40 2014 From: saneasheikh at gmail.com (Sanea Sheikh) Date: Fri, 17 Jan 2014 20:21:40 +0100 Subject: [maker-devel] Problem with re-annotation In-Reply-To: References: Message-ID: Hi Here are the two files that you asked for. The log was from a repeated attempt but the same issue was still there. I have attached the output from the repeated attempt as well so you can have a look at that. Sanea On Fri, Jan 17, 2014 at 6:55 PM, Carson Holt wrote: > Could you send me these two files. I put the full path below based on > your STDERR report. Also this log was from the original run having the > issue, and not a new repeated attempt at that one, correct? > > > First file ?> > > /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1/theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/AR_HYBRID_130113_TINTIN_EF2ON_C1.abinit_masked.0.run0%2Ehmm.snap > > > Second file ?> > > /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1/ > AR_HYBRID_130113_TINTIN_EF2ON_C1.gff > > > Thanks, > Carson > > > From: Sanea Sheikh > Date: Thursday, January 16, 2014 at 3:52 AM > To: , Carson Holt > Subject: Fwd: [maker-devel] Problem with re-annotation > > Hello Carson > Here it is. > Sanea > > On Tue, Jan 14, 2014 at 1:39 AM, Carson Holt wrote: > >> Hi Sanea, >> >> There are no snap calls in your results. It?s as if SNAP never even ran. >> Did you capture STDERR from your second run? If so can you send it to me. >> I just want to see if it even shows SNAP as having run in the progress >> reports. >> >> Thanks, >> Carson >> >> From: Sanea Sheikh >> Date: Monday, January 13, 2014 at 2:17 AM >> To: >> Subject: [maker-devel] Problem with re-annotation >> >> Hello >> >> I am using Maker to annotate a genome for which I only have EST data and >> some protein data. I ran Maker once using this EST and protein data >> (est2genome=1, protein2genome=1). I had the Maker output. I combined all >> the GFF files for all the contigs. I used the combined GFF file to train >> SNAP which gave me a .hmm file. Now I modified the Maker opts control file. >> I provided the hmm file in snap_hmm. I set est2genome=0 and >> protein2genome=0. I ran Maker again assuming that now I have trained the >> gene predictor and I would have better annotations. But now the output file >> that I get does not have Maker annotation. I have attached the control >> files and the output file for the re-run so you can have a look and let me >> know what I am doing wrong in order to re-annotate the genome using the >> output from the previous run. >> >> Sanea >> _______________________________________________ maker-devel mailing list >> maker-devel at box290.bluehost.com >> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org >> > > > -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: run1_0.zip Type: application/zip Size: 2242291 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: AR_HYBRID_130113_TINTIN_EF2ON_C1.gff Type: application/octet-stream Size: 123835 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: AR_HYBRID_130113_TINTIN_EF2ON_C1.abinit_masked.0.run0%2Ehmm.snap Type: application/octet-stream Size: 75 bytes Desc: not available URL: From saneasheikh at gmail.com Sat Jan 18 00:19:26 2014 From: saneasheikh at gmail.com (Sanea Sheikh) Date: Sat, 18 Jan 2014 08:19:26 +0100 Subject: [maker-devel] Problem with re-annotation In-Reply-To: References: Message-ID: Hello Here are the files (test.zip) I got from running Maker again with another HMM. It clearly worked this time. I have attached my HMM (run0.hmm) from the previous run (that went wrong) as well. I can see why snap wasn't calling genes before based on this HMM but do you know why I got an HMM like that? Sanea On Fri, Jan 17, 2014 at 10:34 PM, Carson Holt wrote: > The snap reports are empty, as if SNAP is never calling any genes even > though it runs. Could you try running with a different HMM bundled with > SNAP? Even though it?s not the right species, I just want to see if it will > produce output under different circumstances. > > ?Carson > > > From: Sanea Sheikh > Date: Friday, January 17, 2014 at 12:21 PM > To: Carson Holt > Cc: > Subject: Re: [maker-devel] Problem with re-annotation > > Hi > > Here are the two files that you asked for. > > The log was from a repeated attempt but the same issue was still there. I > have attached the output from the repeated attempt as well so you can have > a look at that. > > Sanea > > > On Fri, Jan 17, 2014 at 6:55 PM, Carson Holt wrote: > >> Could you send me these two files. I put the full path below based on >> your STDERR report. Also this log was from the original run having the >> issue, and not a new repeated attempt at that one, correct? >> >> >> First file ?> >> >> /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1/theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/AR_HYBRID_130113_TINTIN_EF2ON_C1.abinit_masked.0.run0%2Ehmm.snap >> >> >> Second file ?> >> >> /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1/ >> AR_HYBRID_130113_TINTIN_EF2ON_C1.gff >> >> >> Thanks, >> Carson >> >> >> From: Sanea Sheikh >> Date: Thursday, January 16, 2014 at 3:52 AM >> To: , Carson Holt >> Subject: Fwd: [maker-devel] Problem with re-annotation >> >> Hello Carson >> Here it is. >> Sanea >> >> On Tue, Jan 14, 2014 at 1:39 AM, Carson Holt wrote: >> >>> Hi Sanea, >>> >>> There are no snap calls in your results. It?s as if SNAP never even >>> ran. Did you capture STDERR from your second run? If so can you send it >>> to me. I just want to see if it even shows SNAP as having run in the >>> progress reports. >>> >>> Thanks, >>> Carson >>> >>> From: Sanea Sheikh >>> Date: Monday, January 13, 2014 at 2:17 AM >>> To: >>> Subject: [maker-devel] Problem with re-annotation >>> >>> Hello >>> >>> I am using Maker to annotate a genome for which I only have EST data and >>> some protein data. I ran Maker once using this EST and protein data >>> (est2genome=1, protein2genome=1). I had the Maker output. I combined all >>> the GFF files for all the contigs. I used the combined GFF file to train >>> SNAP which gave me a .hmm file. Now I modified the Maker opts control file. >>> I provided the hmm file in snap_hmm. I set est2genome=0 and >>> protein2genome=0. I ran Maker again assuming that now I have trained the >>> gene predictor and I would have better annotations. But now the output file >>> that I get does not have Maker annotation. I have attached the control >>> files and the output file for the re-run so you can have a look and let me >>> know what I am doing wrong in order to re-annotate the genome using the >>> output from the previous run. >>> >>> Sanea >>> _______________________________________________ maker-devel mailing list >>> maker-devel at box290.bluehost.com >>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org >>> >> >> >> > -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: test.zip Type: application/zip Size: 2642437 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: run0.hmm Type: application/octet-stream Size: 43968 bytes Desc: not available URL: From carsonhh at gmail.com Sat Jan 18 10:49:31 2014 From: carsonhh at gmail.com (Carson Holt) Date: Sat, 18 Jan 2014 10:49:31 -0700 Subject: [maker-devel] Problem with re-annotation In-Reply-To: References: Message-ID: I?m not an expert at all the details in the raw HMM, but it looks like all your transition probabilities are 0. You need to regenerate the HMM. How many models were used to generate the original HMM? ?Carson From: Sanea Sheikh Date: Saturday, January 18, 2014 at 12:19 AM To: Carson Holt Cc: Subject: Re: [maker-devel] Problem with re-annotation Hello Here are the files (test.zip) I got from running Maker again with another HMM. It clearly worked this time. I have attached my HMM (run0.hmm) from the previous run (that went wrong) as well. I can see why snap wasn't calling genes before based on this HMM but do you know why I got an HMM like that? Sanea On Fri, Jan 17, 2014 at 10:34 PM, Carson Holt wrote: > The snap reports are empty, as if SNAP is never calling any genes even though > it runs. Could you try running with a different HMM bundled with SNAP? Even > though it?s not the right species, I just want to see if it will produce > output under different circumstances. > > ?Carson > > > From: Sanea Sheikh > Date: Friday, January 17, 2014 at 12:21 PM > To: Carson Holt > Cc: > Subject: Re: [maker-devel] Problem with re-annotation > > Hi > > Here are the two files that you asked for. > > The log was from a repeated attempt but the same issue was still there. I have > attached the output from the repeated attempt as well so you can have a look > at that. > > Sanea > > > On Fri, Jan 17, 2014 at 6:55 PM, Carson Holt wrote: >> Could you send me these two files. I put the full path below based on your >> STDERR report. Also this log was from the original run having the issue, and >> not a new repeated attempt at that one, correct? >> >> >> First file ?> >> /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_red >> undant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130 >> 708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1/theVoid.AR_HYBRID_130113 >> _TINTIN_EF2ON_C1/AR_HYBRID_130113_TINTIN_EF2ON_C1.abinit_masked.0.run0%2Ehmm. >> snap >> >> >> Second file ?> >> /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_red >> undant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130 >> 708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1/AR_HYBRID_130113_TINTIN_ >> EF2ON_C1.gff >> >> >> Thanks, >> Carson >> >> >> From: Sanea Sheikh >> Date: Thursday, January 16, 2014 at 3:52 AM >> To: , Carson Holt >> Subject: Fwd: [maker-devel] Problem with re-annotation >> >> Hello Carson >> Here it is. >> Sanea >> >> On Tue, Jan 14, 2014 at 1:39 AM, Carson Holt wrote: >>> Hi Sanea, >>> >>> There are no snap calls in your results. It?s as if SNAP never even ran. >>> Did you capture STDERR from your second run? If so can you send it to me. >>> I just want to see if it even shows SNAP as having run in the progress >>> reports. >>> >>> Thanks, >>> Carson >>> >>> From: Sanea Sheikh >>> Date: Monday, January 13, 2014 at 2:17 AM >>> To: >>> Subject: [maker-devel] Problem with re-annotation >>> >>> Hello >>> >>> I am using Maker to annotate a genome for which I only have EST data and >>> some protein data. I ran Maker once using this EST and protein data >>> (est2genome=1, protein2genome=1). I had the Maker output. I combined all the >>> GFF files for all the contigs. I used the combined GFF file to train SNAP >>> which gave me a .hmm file. Now I modified the Maker opts control file. I >>> provided the hmm file in snap_hmm. I set est2genome=0 and protein2genome=0. >>> I ran Maker again assuming that now I have trained the gene predictor and I >>> would have better annotations. But now the output file that I get does not >>> have Maker annotation. I have attached the control files and the output file >>> for the re-run so you can have a look and let me know what I am doing wrong >>> in order to re-annotate the genome using the output from the previous run. >>> >>> Sanea >>> _______________________________________________ maker-devel mailing list >>> maker-devel at box290.bluehost.comhttp://box290.bluehost.com/mailman/listinfo/m >>> aker-devel_yandell-lab.org >> >> > -------------- next part -------------- An HTML attachment was scrubbed... URL: From charlos9 at gmail.com Tue Jan 21 10:39:03 2014 From: charlos9 at gmail.com (carlos vargas) Date: Tue, 21 Jan 2014 18:39:03 +0100 Subject: [maker-devel] Problem installing maker In-Reply-To: References: Message-ID: Hi Barry, Thank you for you help. I got maker running, however when I try to install it with MPI support I face some issues. I installed MPICH2 and performed the test that comes with the package and it went smoothly, however when I try to install maker the following messages appear. Thank you in advance, Carlos ~/maker/src$ perl Build.PL MAKER supports distributed parallelization via MPI. Would you like to configure MAKER for MPI (This requires that you have an MPI client installed)? [N ]y Please specify the path to 'mpicc' on your system: [/usr/bin/mpicc ] /usr/bin/mpicc Please specify the path to the directory containing 'mpi.h': [/usr/include/mpi ] /usr/include/mpi Would you like to install the web interface to MAKER (MWAS) on this machine This requires that you be logged in as root or use sudo for './Build install'? [N ] N Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'MAKER' version '2.3' The file 'Build' has been created for you to finish installing MAKER. ============================================================================== STATUS MAKER 2.3 ============================================================================== PERL Dependencies: VERIFIED External Programs: VERIFIED External C Libraries: VERIFIED MPI SUPPORT: ENABLED MWAS Web Interface: DISABLED MAKER PACKAGE: CONFIGURATION OK Important Commands: ./Build installdeps #installs missing PERL dependencies ./Build installexes #installs all missing external programs ./Build install #installs MAKER ./Build status #Shows this status menu Other Commands: ./Build repeatmasker #installs RepeatMasker (asks for RepBase) ./Build blast #installs BLAST (NCBI BLAST+) ./Build exonerate #installs Exonerate (v2 on UNIX / v1 on Mac OSX) ./Build snap #installs SNAP ./Build augustus #installs Augustus ./Build apollo #installs Apollo ./Build gbrowse #installs GBrowse (must be root) ./Build jbrowse #installs JBrowse (MAKER copy, not web accecible) ./Build webapollo #installs WebApollo (use maker2wap to create DBs) ./Build mpich2 #installs MPICH2 (but manual install recommended) ~/maker/src$ ./Build install Configuring MAKER with MPI support Installing MAKER... Configuring MAKER with MPI support Subroutine dl_load_flags redefined at (eval 93) line 8. Installing /home/cvargas/maker/src/../perl/lib/MAKER/ConfigData.pm Skip /home/cvargas/maker/src/../perl/config-x86_64-linux-gnu-thread-multi-5.014002 (unchanged) On Mon, Jan 13, 2014 at 10:21 PM, Barry Moore wrote: > Hi Carlos, > > Did you run ./Build install? If not do that first and then you want to > run the copy of maker in ~/software/maker/bin/maker. > > B > > On Jan 13, 2014, at 1:00 PM, carlos vargas wrote: > > Hello, > > I have been trying to install maker but I've been facing several issues. > After installing all of the prerequisites I ran perl Build.PL and ./Build > install. No issues were detected. Afterwards I tried to test maker by > simply executing maker -h and got the following error: > > Can't locate MAKER/ConfigData.pm in @INC (@INC contains: > ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib > ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl > /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 > /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 > /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. > BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line > 42. > > I found a similar thread which suggested reinstalling (which I did) but I > still face the same issue. The full messages are below. > > > Thank you for your help! > > Carlos > > > ~/software/maker/src$ sudo perl Build.PL > > MAKER supports distributed parallelization via MPI. > Would you like to configure MAKER for MPI (This > requires that you have an MPI client installed)? [N ] > N > > Would you like to install the web interface to MAKER (MWAS) on this machine > This requires that you be logged in as root or use sudo for './Build > install'? [N ] > N > Created MYMETA.yml and MYMETA.json > Creating new 'Build' script for 'MAKER' version '2.3' > > > The file 'Build' has been created for you to finish installing MAKER. > > > > ============================================================================== > STATUS MAKER 2.3 > > ============================================================================== > PERL Dependencies: VERIFIED > External Programs: VERIFIED > External C Libraries: VERIFIED > MPI SUPPORT: DISABLED > MWAS Web Interface: DISABLED > MAKER PACKAGE: CONFIGURATION OK > > > Important Commands: > ./Build installdeps #installs missing PERL dependencies > ./Build installexes #installs all missing external programs > ./Build install #installs MAKER > ./Build status #Shows this status menu > > Other Commands: > ./Build repeatmasker #installs RepeatMasker (asks for RepBase) > ./Build blast #installs BLAST (NCBI BLAST+) > ./Build exonerate #installs Exonerate (v2 on UNIX / v1 on > Mac OSX) > ./Build snap #installs SNAP > ./Build augustus #installs Augustus > ./Build apollo #installs Apollo > ./Build gbrowse #installs GBrowse (must be root) > ./Build jbrowse #installs JBrowse (MAKER copy, not web > accecible) > ./Build webapollo #installs WebApollo (use maker2wap to > create DBs) > ./Build mpich2 #installs MPICH2 (but manual install > recommended) > > ~/software/maker/src$ sudo ./Build install > Building MAKER > Installing MAKER... > Building MAKER > Installing ~/software/maker/src/../perl/lib/MAKER/ConfigData.pm > > ~/software/maker/src$ maker -h > Can't locate MAKER/ConfigData.pm in @INC (@INC contains: > ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib > ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl > /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 > /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 > /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. > BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line > 42. > > > _______________________________________________ > maker-devel mailing list > maker-devel at box290.bluehost.com > http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org > > > Barry Moore > Research Scientist > Dept. of Human Genetics > University of Utah > Salt Lake City, UT 84112 > -------------------------------------------- > (801) 585-3543 > > > > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From dence at genetics.utah.edu Tue Jan 21 10:45:32 2014 From: dence at genetics.utah.edu (Daniel Ence) Date: Tue, 21 Jan 2014 17:45:32 +0000 Subject: [maker-devel] Problem installing maker In-Reply-To: References: , Message-ID: Hi Carlos, That message looks like maker installed correctly. Have you tried running it in MPI now? The command to use MPI for maker will look something like "mpiexec -n X maker" where X is the number of processors you want it to use. Thanks, Daniel Daniel Ence Graduate Student Eccles Institute of Human Genetics University of Utah 15 North 2030 East, Room 2100 Salt Lake City, UT 84112-5330 ________________________________ From: maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of carlos vargas [charlos9 at gmail.com] Sent: Tuesday, January 21, 2014 10:39 AM To: Barry Moore Cc: maker-devel at yandell-lab.org Subject: Re: [maker-devel] Problem installing maker Hi Barry, Thank you for you help. I got maker running, however when I try to install it with MPI support I face some issues. I installed MPICH2 and performed the test that comes with the package and it went smoothly, however when I try to install maker the following messages appear. Thank you in advance, Carlos ~/maker/src$ perl Build.PL MAKER supports distributed parallelization via MPI. Would you like to configure MAKER for MPI (This requires that you have an MPI client installed)? [N ]y Please specify the path to 'mpicc' on your system: [/usr/bin/mpicc ] /usr/bin/mpicc Please specify the path to the directory containing 'mpi.h': [/usr/include/mpi ] /usr/include/mpi Would you like to install the web interface to MAKER (MWAS) on this machine This requires that you be logged in as root or use sudo for './Build install'? [N ] N Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'MAKER' version '2.3' The file 'Build' has been created for you to finish installing MAKER. ============================================================================== STATUS MAKER 2.3 ============================================================================== PERL Dependencies: VERIFIED External Programs: VERIFIED External C Libraries: VERIFIED MPI SUPPORT: ENABLED MWAS Web Interface: DISABLED MAKER PACKAGE: CONFIGURATION OK Important Commands: ./Build installdeps #installs missing PERL dependencies ./Build installexes #installs all missing external programs ./Build install #installs MAKER ./Build status #Shows this status menu Other Commands: ./Build repeatmasker #installs RepeatMasker (asks for RepBase) ./Build blast #installs BLAST (NCBI BLAST+) ./Build exonerate #installs Exonerate (v2 on UNIX / v1 on Mac OSX) ./Build snap #installs SNAP ./Build augustus #installs Augustus ./Build apollo #installs Apollo ./Build gbrowse #installs GBrowse (must be root) ./Build jbrowse #installs JBrowse (MAKER copy, not web accecible) ./Build webapollo #installs WebApollo (use maker2wap to create DBs) ./Build mpich2 #installs MPICH2 (but manual install recommended) ~/maker/src$ ./Build install Configuring MAKER with MPI support Installing MAKER... Configuring MAKER with MPI support Subroutine dl_load_flags redefined at (eval 93) line 8. Installing /home/cvargas/maker/src/../perl/lib/MAKER/ConfigData.pm Skip /home/cvargas/maker/src/../perl/config-x86_64-linux-gnu-thread-multi-5.014002 (unchanged) On Mon, Jan 13, 2014 at 10:21 PM, Barry Moore > wrote: Hi Carlos, Did you run ./Build install? If not do that first and then you want to run the copy of maker in ~/software/maker/bin/maker. B On Jan 13, 2014, at 1:00 PM, carlos vargas wrote: Hello, I have been trying to install maker but I've been facing several issues. After installing all of the prerequisites I ran perl Build.PL and ./Build install. No issues were detected. Afterwards I tried to test maker by simply executing maker -h and got the following error: Can't locate MAKER/ConfigData.pm in @INC (@INC contains: ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42. I found a similar thread which suggested reinstalling (which I did) but I still face the same issue. The full messages are below. Thank you for your help! Carlos ~/software/maker/src$ sudo perl Build.PL MAKER supports distributed parallelization via MPI. Would you like to configure MAKER for MPI (This requires that you have an MPI client installed)? [N ] N Would you like to install the web interface to MAKER (MWAS) on this machine This requires that you be logged in as root or use sudo for './Build install'? [N ] N Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'MAKER' version '2.3' The file 'Build' has been created for you to finish installing MAKER. ============================================================================== STATUS MAKER 2.3 ============================================================================== PERL Dependencies: VERIFIED External Programs: VERIFIED External C Libraries: VERIFIED MPI SUPPORT: DISABLED MWAS Web Interface: DISABLED MAKER PACKAGE: CONFIGURATION OK Important Commands: ./Build installdeps #installs missing PERL dependencies ./Build installexes #installs all missing external programs ./Build install #installs MAKER ./Build status #Shows this status menu Other Commands: ./Build repeatmasker #installs RepeatMasker (asks for RepBase) ./Build blast #installs BLAST (NCBI BLAST+) ./Build exonerate #installs Exonerate (v2 on UNIX / v1 on Mac OSX) ./Build snap #installs SNAP ./Build augustus #installs Augustus ./Build apollo #installs Apollo ./Build gbrowse #installs GBrowse (must be root) ./Build jbrowse #installs JBrowse (MAKER copy, not web accecible) ./Build webapollo #installs WebApollo (use maker2wap to create DBs) ./Build mpich2 #installs MPICH2 (but manual install recommended) ~/software/maker/src$ sudo ./Build install Building MAKER Installing MAKER... Building MAKER Installing ~/software/maker/src/../perl/lib/MAKER/ConfigData.pm ~/software/maker/src$ maker -h Can't locate MAKER/ConfigData.pm in @INC (@INC contains: ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42. _______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org Barry Moore Research Scientist Dept. of Human Genetics University of Utah Salt Lake City, UT 84112 -------------------------------------------- (801) 585-3543 -------------- next part -------------- An HTML attachment was scrubbed... URL: From charlos9 at gmail.com Tue Jan 21 10:49:35 2014 From: charlos9 at gmail.com (carlos vargas) Date: Tue, 21 Jan 2014 18:49:35 +0100 Subject: [maker-devel] Problem installing maker In-Reply-To: References: Message-ID: Thank you very much for your quick reply! Sorry, I forgot to attach the error message. /gnmP05/Carlos/mpiannotate$ ~/mpich2-install/bin/mpiexec -n 4 ~/maker/bin/maker /usr/bin/perl: symbol lookup error: /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so: undefined symbol: mca_base_param_reg_int /usr/bin/perl: symbol lookup error: /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so: undefined symbol: mca_base_param_reg_int /usr/bin/perl: symbol lookup error: /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so: undefined symbol: mca_base_param_reg_int /usr/bin/perl: symbol lookup error: /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so: undefined symbol: mca_base_param_reg_int =================================================================================== = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES = EXIT CODE: 127 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES =================================================================================== On Tue, Jan 21, 2014 at 6:45 PM, Daniel Ence wrote: > Hi Carlos, That message looks like maker installed correctly. Have you > tried running it in MPI now? The command to use MPI for maker will look > something like "mpiexec -n X maker" where X is the number of processors you > want it to use. > > Thanks, > Daniel > > Daniel Ence > Graduate Student > Eccles Institute of Human Genetics > University of Utah > 15 North 2030 East, Room 2100 > Salt Lake City, UT 84112-5330 > ------------------------------ > *From:* maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of > carlos vargas [charlos9 at gmail.com] > *Sent:* Tuesday, January 21, 2014 10:39 AM > *To:* Barry Moore > *Cc:* maker-devel at yandell-lab.org > *Subject:* Re: [maker-devel] Problem installing maker > > Hi Barry, > > Thank you for you help. I got maker running, however when I try to > install it with MPI support I face some issues. I installed MPICH2 and > performed the test that comes with the package and it went smoothly, > however when I try to install maker the following messages appear. > > > Thank you in advance, > > Carlos > > ~/maker/src$ perl Build.PL > > MAKER supports distributed parallelization via MPI. > Would you like to configure MAKER for MPI (This > requires that you have an MPI client installed)? [N ]y > > Please specify the path to 'mpicc' on your system: [/usr/bin/mpicc ] > /usr/bin/mpicc > > Please specify the path to the directory containing 'mpi.h': > [/usr/include/mpi ] > /usr/include/mpi > > Would you like to install the web interface to MAKER (MWAS) on this > machine > This requires that you be logged in as root or use sudo for './Build > install'? [N ] > N > Created MYMETA.yml and MYMETA.json > Creating new 'Build' script for 'MAKER' version '2.3' > > > The file 'Build' has been created for you to finish installing MAKER. > > > > ============================================================================== > STATUS MAKER 2.3 > > ============================================================================== > PERL Dependencies: VERIFIED > External Programs: VERIFIED > External C Libraries: VERIFIED > MPI SUPPORT: ENABLED > MWAS Web Interface: DISABLED > MAKER PACKAGE: CONFIGURATION OK > > > Important Commands: > ./Build installdeps #installs missing PERL dependencies > ./Build installexes #installs all missing external programs > ./Build install #installs MAKER > ./Build status #Shows this status menu > > Other Commands: > ./Build repeatmasker #installs RepeatMasker (asks for RepBase) > ./Build blast #installs BLAST (NCBI BLAST+) > ./Build exonerate #installs Exonerate (v2 on UNIX / v1 on Mac OSX) > ./Build snap #installs SNAP > ./Build augustus #installs Augustus > ./Build apollo #installs Apollo > ./Build gbrowse #installs GBrowse (must be root) > ./Build jbrowse #installs JBrowse (MAKER copy, not web accecible) > ./Build webapollo #installs WebApollo (use maker2wap to create DBs) > ./Build mpich2 #installs MPICH2 (but manual install recommended) > ~/maker/src$ ./Build install > Configuring MAKER with MPI support > Installing MAKER... > Configuring MAKER with MPI support > Subroutine dl_load_flags redefined at (eval 93) line 8. > Installing /home/cvargas/maker/src/../perl/lib/MAKER/ConfigData.pm > Skip > /home/cvargas/maker/src/../perl/config-x86_64-linux-gnu-thread-multi-5.014002 > (unchanged) > > > > > On Mon, Jan 13, 2014 at 10:21 PM, Barry Moore wrote: > >> Hi Carlos, >> >> Did you run ./Build install? If not do that first and then you want to >> run the copy of maker in ~/software/maker/bin/maker. >> >> B >> >> On Jan 13, 2014, at 1:00 PM, carlos vargas wrote: >> >> Hello, >> >> I have been trying to install maker but I've been facing several >> issues. After installing all of the prerequisites I ran perl Build.PL and >> ./Build install. No issues were detected. Afterwards I tried to test maker >> by simply executing maker -h and got the following error: >> >> Can't locate MAKER/ConfigData.pm in @INC (@INC contains: >> ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib >> ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl >> /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 >> /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 >> /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. >> BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line >> 42. >> >> I found a similar thread which suggested reinstalling (which I did) but >> I still face the same issue. The full messages are below. >> >> >> Thank you for your help! >> >> Carlos >> >> >> ~/software/maker/src$ sudo perl Build.PL >> >> MAKER supports distributed parallelization via MPI. >> Would you like to configure MAKER for MPI (This >> requires that you have an MPI client installed)? [N ] >> N >> >> Would you like to install the web interface to MAKER (MWAS) on this >> machine >> This requires that you be logged in as root or use sudo for './Build >> install'? [N ] >> N >> Created MYMETA.yml and MYMETA.json >> Creating new 'Build' script for 'MAKER' version '2.3' >> >> >> The file 'Build' has been created for you to finish installing MAKER. >> >> >> >> ============================================================================== >> STATUS MAKER 2.3 >> >> ============================================================================== >> PERL Dependencies: VERIFIED >> External Programs: VERIFIED >> External C Libraries: VERIFIED >> MPI SUPPORT: DISABLED >> MWAS Web Interface: DISABLED >> MAKER PACKAGE: CONFIGURATION OK >> >> >> Important Commands: >> ./Build installdeps #installs missing PERL dependencies >> ./Build installexes #installs all missing external programs >> ./Build install #installs MAKER >> ./Build status #Shows this status menu >> >> Other Commands: >> ./Build repeatmasker #installs RepeatMasker (asks for RepBase) >> ./Build blast #installs BLAST (NCBI BLAST+) >> ./Build exonerate #installs Exonerate (v2 on UNIX / v1 on >> Mac OSX) >> ./Build snap #installs SNAP >> ./Build augustus #installs Augustus >> ./Build apollo #installs Apollo >> ./Build gbrowse #installs GBrowse (must be root) >> ./Build jbrowse #installs JBrowse (MAKER copy, not web >> accecible) >> ./Build webapollo #installs WebApollo (use maker2wap to >> create DBs) >> ./Build mpich2 #installs MPICH2 (but manual install >> recommended) >> >> ~/software/maker/src$ sudo ./Build install >> Building MAKER >> Installing MAKER... >> Building MAKER >> Installing ~/software/maker/src/../perl/lib/MAKER/ConfigData.pm >> >> ~/software/maker/src$ maker -h >> Can't locate MAKER/ConfigData.pm in @INC (@INC contains: >> ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib >> ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl >> /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 >> /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 >> /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. >> BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line >> 42. >> >> >> _______________________________________________ >> maker-devel mailing list >> maker-devel at box290.bluehost.com >> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org >> >> >> Barry Moore >> Research Scientist >> Dept. of Human Genetics >> University of Utah >> Salt Lake City, UT 84112 >> -------------------------------------------- >> (801) 585-3543 >> >> >> >> >> > -------------- next part -------------- An HTML attachment was scrubbed... URL: From carsonhh at gmail.com Tue Jan 21 10:55:10 2014 From: carsonhh at gmail.com (Carson Holt) Date: Tue, 21 Jan 2014 10:55:10 -0700 Subject: [maker-devel] Problem installing maker In-Reply-To: References: Message-ID: The error message says you are using OpenMPI and not MPICH2 ?> /usr/lib/openmpi/lib/openmpi To use OpenMPI set the following before installing maker and before running maker (best to just add it to your ~/.bash_profile) export LD_PRELOAD=/usr/lib/openmpi/lib/libmpi.so You will have to rerun the ?perl Build.PL? and ?./Build install? steps after running this command. Setting LD_PRELOAD is required for any program to use OpenMPI?s shared libraries. Thanks, Carosn From: carlos vargas Date: Tuesday, January 21, 2014 at 10:49 AM To: Daniel Ence Cc: "maker-devel at yandell-lab.org" Subject: Re: [maker-devel] Problem installing maker Thank you very much for your quick reply! Sorry, I forgot to attach the error message. /gnmP05/Carlos/mpiannotate$ ~/mpich2-install/bin/mpiexec -n 4 ~/maker/bin/maker /usr/bin/perl: symbol lookup error: /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so: undefined symbol: mca_base_param_reg_int /usr/bin/perl: symbol lookup error: /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so: undefined symbol: mca_base_param_reg_int /usr/bin/perl: symbol lookup error: /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so: undefined symbol: mca_base_param_reg_int /usr/bin/perl: symbol lookup error: /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so: undefined symbol: mca_base_param_reg_int ============================================================================ ======= = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES = EXIT CODE: 127 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES ============================================================================ ======= On Tue, Jan 21, 2014 at 6:45 PM, Daniel Ence wrote: > Hi Carlos, That message looks like maker installed correctly. Have you tried > running it in MPI now? The command to use MPI for maker will look something > like "mpiexec -n X maker" where X is the number of processors you want it to > use. > > Thanks, > Daniel > > Daniel Ence > Graduate Student > Eccles Institute of Human Genetics > University of Utah > 15 North 2030 East, Room 2100 > Salt Lake City, UT 84112-5330 > > From: maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of carlos > vargas [charlos9 at gmail.com] > Sent: Tuesday, January 21, 2014 10:39 AM > To: Barry Moore > Cc: maker-devel at yandell-lab.org > Subject: Re: [maker-devel] Problem installing maker > > Hi Barry, > > Thank you for you help. I got maker running, however when I try to install it > with MPI support I face some issues. I installed MPICH2 and performed the test > that comes with the package and it went smoothly, however when I try to > install maker the following messages appear. > > > Thank you in advance, > > Carlos > > ~/maker/src$ perl Build.PL > > MAKER supports distributed parallelization via MPI. > Would you like to configure MAKER for MPI (This > requires that you have an MPI client installed)? [N ]y > > Please specify the path to 'mpicc' on your system: [/usr/bin/mpicc ] > /usr/bin/mpicc > > Please specify the path to the directory containing 'mpi.h': [/usr/include/mpi > ] > /usr/include/mpi > > Would you like to install the web interface to MAKER (MWAS) on this machine > This requires that you be logged in as root or use sudo for './Build install'? > [N ] > N > Created MYMETA.yml and MYMETA.json > Creating new 'Build' script for 'MAKER' version '2.3' > > > The file 'Build' has been created for you to finish installing MAKER. > > > ============================================================================== > STATUS MAKER 2.3 > ============================================================================== > PERL Dependencies: VERIFIED > External Programs: VERIFIED > External C Libraries: VERIFIED > MPI SUPPORT: ENABLED > MWAS Web Interface: DISABLED > MAKER PACKAGE: CONFIGURATION OK > > > Important Commands: > ./Build installdeps#installs missing PERL dependencies > ./Build installexes#installs all missing external programs > ./Build install#installs MAKER > ./Build status#Shows this status menu > > Other Commands: > ./Build repeatmasker#installs RepeatMasker (asks for RepBase) > ./Build blast#installs BLAST (NCBI BLAST+) > ./Build exonerate#installs Exonerate (v2 on UNIX / v1 on Mac OSX) > ./Build snap#installs SNAP > ./Build augustus#installs Augustus > ./Build apollo#installs Apollo > ./Build gbrowse#installs GBrowse (must be root) > ./Build jbrowse#installs JBrowse (MAKER copy, not web accecible) > ./Build webapollo#installs WebApollo (use maker2wap to create DBs) > ./Build mpich2#installs MPICH2 (but manual install recommended) > ~/maker/src$ ./Build install > Configuring MAKER with MPI support > Installing MAKER... > Configuring MAKER with MPI support > Subroutine dl_load_flags redefined at (eval 93) line 8. > Installing /home/cvargas/maker/src/../perl/lib/MAKER/ConfigData.pm > Skip > /home/cvargas/maker/src/../perl/config-x86_64-linux-gnu-thread-multi-5.014002 > (unchanged) > > > > > On Mon, Jan 13, 2014 at 10:21 PM, Barry Moore wrote: >> Hi Carlos, >> >> Did you run ./Build install? If not do that first and then you want to run >> the copy of maker in ~/software/maker/bin/maker. >> >> B >> >> On Jan 13, 2014, at 1:00 PM, carlos vargas wrote: >> >>> Hello, >>> >>> I have been trying to install maker but I've been facing several issues. >>> After installing all of the prerequisites I ran perl Build.PL and ./Build >>> install. No issues were detected. Afterwards I tried to test maker by simply >>> executing maker -h and got the following error: >>> >>> Can't locate MAKER/ConfigData.pm in @INC (@INC contains: >>> ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib >>> ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl >>> /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 >>> /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 >>> /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. >>> BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42. >>> >>> I found a similar thread which suggested reinstalling (which I did) but I >>> still face the same issue. The full messages are below. >>> >>> >>> Thank you for your help! >>> >>> Carlos >>> >>> >>> ~/software/maker/src$ sudo perl Build.PL >>> >>> MAKER supports distributed parallelization via MPI. >>> Would you like to configure MAKER for MPI (This >>> requires that you have an MPI client installed)? [N ] >>> N >>> >>> Would you like to install the web interface to MAKER (MWAS) on this machine >>> This requires that you be logged in as root or use sudo for './Build >>> install'? [N ] >>> N >>> Created MYMETA.yml and MYMETA.json >>> Creating new 'Build' script for 'MAKER' version '2.3' >>> >>> >>> The file 'Build' has been created for you to finish installing MAKER. >>> >>> >>> ============================================================================ >>> == >>> STATUS MAKER 2.3 >>> ============================================================================ >>> == >>> PERL Dependencies: VERIFIED >>> External Programs: VERIFIED >>> External C Libraries: VERIFIED >>> MPI SUPPORT: DISABLED >>> MWAS Web Interface: DISABLED >>> MAKER PACKAGE: CONFIGURATION OK >>> >>> >>> Important Commands: >>> ./Build installdeps #installs missing PERL dependencies >>> ./Build installexes #installs all missing external programs >>> ./Build install #installs MAKER >>> ./Build status #Shows this status menu >>> >>> Other Commands: >>> ./Build repeatmasker #installs RepeatMasker (asks for RepBase) >>> ./Build blast #installs BLAST (NCBI BLAST+) >>> ./Build exonerate #installs Exonerate (v2 on UNIX / v1 on Mac >>> OSX) >>> ./Build snap #installs SNAP >>> ./Build augustus #installs Augustus >>> ./Build apollo #installs Apollo >>> ./Build gbrowse #installs GBrowse (must be root) >>> ./Build jbrowse #installs JBrowse (MAKER copy, not web >>> accecible) >>> ./Build webapollo #installs WebApollo (use maker2wap to create >>> DBs) >>> ./Build mpich2 #installs MPICH2 (but manual install >>> recommended) >>> >>> ~/software/maker/src$ sudo ./Build install >>> Building MAKER >>> Installing MAKER... >>> Building MAKER >>> Installing ~/software/maker/src/../perl/lib/MAKER/ConfigData.pm >>> >>> ~/software/maker/src$ maker -h >>> Can't locate MAKER/ConfigData.pm in @INC (@INC contains: >>> ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib >>> ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl >>> /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 >>> /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 >>> /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. >>> BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42. >>> >>> >>> _______________________________________________ >>> maker-devel mailing list >>> maker-devel at box290.bluehost.com >>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org >> >> Barry Moore >> Research Scientist >> Dept. of Human Genetics >> University of Utah >> Salt Lake City, UT 84112 >> -------------------------------------------- >> (801) 585-3543 >> >> >> >> > _______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org -------------- next part -------------- An HTML attachment was scrubbed... URL: From carsonhh at gmail.com Tue Jan 21 10:56:55 2014 From: carsonhh at gmail.com (Carson Holt) Date: Tue, 21 Jan 2014 10:56:55 -0700 Subject: [maker-devel] Problem installing maker In-Reply-To: References: Message-ID: FYI. You may be mixing your MPI configurations, by supplying some values from MPICH2 and others from OpenMPI. You will need to check your configurations. ?Carson From: Carson Holt Date: Tuesday, January 21, 2014 at 10:55 AM To: carlos vargas , Daniel Ence Cc: "maker-devel at yandell-lab.org" Subject: Re: [maker-devel] Problem installing maker The error message says you are using OpenMPI and not MPICH2 ?> /usr/lib/openmpi/lib/openmpi To use OpenMPI set the following before installing maker and before running maker (best to just add it to your ~/.bash_profile) export LD_PRELOAD=/usr/lib/openmpi/lib/libmpi.so You will have to rerun the ?perl Build.PL? and ?./Build install? steps after running this command. Setting LD_PRELOAD is required for any program to use OpenMPI?s shared libraries. Thanks, Carosn From: carlos vargas Date: Tuesday, January 21, 2014 at 10:49 AM To: Daniel Ence Cc: "maker-devel at yandell-lab.org" Subject: Re: [maker-devel] Problem installing maker Thank you very much for your quick reply! Sorry, I forgot to attach the error message. /gnmP05/Carlos/mpiannotate$ ~/mpich2-install/bin/mpiexec -n 4 ~/maker/bin/maker /usr/bin/perl: symbol lookup error: /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so: undefined symbol: mca_base_param_reg_int /usr/bin/perl: symbol lookup error: /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so: undefined symbol: mca_base_param_reg_int /usr/bin/perl: symbol lookup error: /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so: undefined symbol: mca_base_param_reg_int /usr/bin/perl: symbol lookup error: /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so: undefined symbol: mca_base_param_reg_int ============================================================================ ======= = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES = EXIT CODE: 127 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES ============================================================================ ======= On Tue, Jan 21, 2014 at 6:45 PM, Daniel Ence wrote: > Hi Carlos, That message looks like maker installed correctly. Have you tried > running it in MPI now? The command to use MPI for maker will look something > like "mpiexec -n X maker" where X is the number of processors you want it to > use. > > Thanks, > Daniel > > Daniel Ence > Graduate Student > Eccles Institute of Human Genetics > University of Utah > 15 North 2030 East, Room 2100 > Salt Lake City, UT 84112-5330 > > From: maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of carlos > vargas [charlos9 at gmail.com] > Sent: Tuesday, January 21, 2014 10:39 AM > To: Barry Moore > Cc: maker-devel at yandell-lab.org > Subject: Re: [maker-devel] Problem installing maker > > Hi Barry, > > Thank you for you help. I got maker running, however when I try to install it > with MPI support I face some issues. I installed MPICH2 and performed the test > that comes with the package and it went smoothly, however when I try to > install maker the following messages appear. > > > Thank you in advance, > > Carlos > > ~/maker/src$ perl Build.PL > > MAKER supports distributed parallelization via MPI. > Would you like to configure MAKER for MPI (This > requires that you have an MPI client installed)? [N ]y > > Please specify the path to 'mpicc' on your system: [/usr/bin/mpicc ] > /usr/bin/mpicc > > Please specify the path to the directory containing 'mpi.h': [/usr/include/mpi > ] > /usr/include/mpi > > Would you like to install the web interface to MAKER (MWAS) on this machine > This requires that you be logged in as root or use sudo for './Build install'? > [N ] > N > Created MYMETA.yml and MYMETA.json > Creating new 'Build' script for 'MAKER' version '2.3' > > > The file 'Build' has been created for you to finish installing MAKER. > > > ============================================================================== > STATUS MAKER 2.3 > ============================================================================== > PERL Dependencies: VERIFIED > External Programs: VERIFIED > External C Libraries: VERIFIED > MPI SUPPORT: ENABLED > MWAS Web Interface: DISABLED > MAKER PACKAGE: CONFIGURATION OK > > > Important Commands: > ./Build installdeps#installs missing PERL dependencies > ./Build installexes#installs all missing external programs > ./Build install#installs MAKER > ./Build status#Shows this status menu > > Other Commands: > ./Build repeatmasker#installs RepeatMasker (asks for RepBase) > ./Build blast#installs BLAST (NCBI BLAST+) > ./Build exonerate#installs Exonerate (v2 on UNIX / v1 on Mac OSX) > ./Build snap#installs SNAP > ./Build augustus#installs Augustus > ./Build apollo#installs Apollo > ./Build gbrowse#installs GBrowse (must be root) > ./Build jbrowse#installs JBrowse (MAKER copy, not web accecible) > ./Build webapollo#installs WebApollo (use maker2wap to create DBs) > ./Build mpich2#installs MPICH2 (but manual install recommended) > ~/maker/src$ ./Build install > Configuring MAKER with MPI support > Installing MAKER... > Configuring MAKER with MPI support > Subroutine dl_load_flags redefined at (eval 93) line 8. > Installing /home/cvargas/maker/src/../perl/lib/MAKER/ConfigData.pm > Skip > /home/cvargas/maker/src/../perl/config-x86_64-linux-gnu-thread-multi-5.014002 > (unchanged) > > > > > On Mon, Jan 13, 2014 at 10:21 PM, Barry Moore wrote: >> Hi Carlos, >> >> Did you run ./Build install? If not do that first and then you want to run >> the copy of maker in ~/software/maker/bin/maker. >> >> B >> >> On Jan 13, 2014, at 1:00 PM, carlos vargas wrote: >> >>> Hello, >>> >>> I have been trying to install maker but I've been facing several issues. >>> After installing all of the prerequisites I ran perl Build.PL and ./Build >>> install. No issues were detected. Afterwards I tried to test maker by simply >>> executing maker -h and got the following error: >>> >>> Can't locate MAKER/ConfigData.pm in @INC (@INC contains: >>> ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib >>> ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl >>> /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 >>> /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 >>> /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. >>> BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42. >>> >>> I found a similar thread which suggested reinstalling (which I did) but I >>> still face the same issue. The full messages are below. >>> >>> >>> Thank you for your help! >>> >>> Carlos >>> >>> >>> ~/software/maker/src$ sudo perl Build.PL >>> >>> MAKER supports distributed parallelization via MPI. >>> Would you like to configure MAKER for MPI (This >>> requires that you have an MPI client installed)? [N ] >>> N >>> >>> Would you like to install the web interface to MAKER (MWAS) on this machine >>> This requires that you be logged in as root or use sudo for './Build >>> install'? [N ] >>> N >>> Created MYMETA.yml and MYMETA.json >>> Creating new 'Build' script for 'MAKER' version '2.3' >>> >>> >>> The file 'Build' has been created for you to finish installing MAKER. >>> >>> >>> ============================================================================ >>> == >>> STATUS MAKER 2.3 >>> ============================================================================ >>> == >>> PERL Dependencies: VERIFIED >>> External Programs: VERIFIED >>> External C Libraries: VERIFIED >>> MPI SUPPORT: DISABLED >>> MWAS Web Interface: DISABLED >>> MAKER PACKAGE: CONFIGURATION OK >>> >>> >>> Important Commands: >>> ./Build installdeps #installs missing PERL dependencies >>> ./Build installexes #installs all missing external programs >>> ./Build install #installs MAKER >>> ./Build status #Shows this status menu >>> >>> Other Commands: >>> ./Build repeatmasker #installs RepeatMasker (asks for RepBase) >>> ./Build blast #installs BLAST (NCBI BLAST+) >>> ./Build exonerate #installs Exonerate (v2 on UNIX / v1 on Mac >>> OSX) >>> ./Build snap #installs SNAP >>> ./Build augustus #installs Augustus >>> ./Build apollo #installs Apollo >>> ./Build gbrowse #installs GBrowse (must be root) >>> ./Build jbrowse #installs JBrowse (MAKER copy, not web >>> accecible) >>> ./Build webapollo #installs WebApollo (use maker2wap to create >>> DBs) >>> ./Build mpich2 #installs MPICH2 (but manual install >>> recommended) >>> >>> ~/software/maker/src$ sudo ./Build install >>> Building MAKER >>> Installing MAKER... >>> Building MAKER >>> Installing ~/software/maker/src/../perl/lib/MAKER/ConfigData.pm >>> >>> ~/software/maker/src$ maker -h >>> Can't locate MAKER/ConfigData.pm in @INC (@INC contains: >>> ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib >>> ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl >>> /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 >>> /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 >>> /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. >>> BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42. >>> >>> >>> _______________________________________________ >>> maker-devel mailing list >>> maker-devel at box290.bluehost.com >>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org >> >> Barry Moore >> Research Scientist >> Dept. of Human Genetics >> University of Utah >> Salt Lake City, UT 84112 >> -------------------------------------------- >> (801) 585-3543 >> >> >> >> > _______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.comhttp://box290.bluehost.com/mailman/listinfo/m aker-devel_yandell-lab.org -------------- next part -------------- An HTML attachment was scrubbed... URL: From charlos9 at gmail.com Wed Jan 22 17:34:10 2014 From: charlos9 at gmail.com (carlos vargas) Date: Thu, 23 Jan 2014 01:34:10 +0100 Subject: [maker-devel] Problem before running ab-initio predictors Message-ID: Hello, I finally was able to install maker with mpi support, however now I see a new error which I wasn't seeing before. Both for mpiexec and single maker runs I observe the following error just after it finishes running exonerate. Thank you for your time! Carlos deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation cleaning clusters.... total clusters:1 now processing 0 cleaning clusters.... total clusters:1 now processing 0 annotating transcripts Making transcripts ...processing 0 of 1 ERROR: Not a valid predictor in auto_annoator::get_pred_shot at /home/cvargas/maker/bin/../lib/maker/auto_annotator.pm line 2155. maker::auto_annotator::get_pred_shot(FastaSeq=HASH(0x3eb6920), ">2973", "/gnmP05/Carlos/mpiannotatetest/longest.maker.output/longest_d"..., undef, HASH(0x3eeb9f8), 0, "trnascan", HASH(0x3fb1f80), runlog=HASH(0x3ec6e38), ...) called at /home/cvargas/maker/bin/../lib/maker/auto_annotator.pm line 1923 maker::auto_annotator::run_it(ARRAY(0x3fab4d0), "/gnmP05/Carlos/mpiannotatetest/longest.maker.output/longest_d"..., FastaSeq=HASH(0x3eb6920), FastaSeq=HASH(0x3ed42d0), ">2973", "trnascan", HASH(0x3fb1f80)) called at /home/cvargas/maker/bin/../lib/maker/ auto_annotator.pm line 920 maker::auto_annotator::annotate_trans(FastaSeq=HASH(0x3ed42d0), FastaSeq=HASH(0x3eb6920), ">2973", 2973, ARRAY(0x3e818f8), "/gnmP05/Carlos/mpiannotatetest/longest.maker.output/longest_d"..., HASH(0x3fb1f80), runlog=HASH(0x3ec6e38)) called at /home/cvargas/maker/bin/../lib/Process/MpiChunk.pm line 3775 Process::MpiChunk::__ANON__() called at /home/cvargas/maker/bin/../lib/Error.pm line 415 eval {...} called at /home/cvargas/maker/bin/../lib/Error.pm line 407 Error::subs::try(CODE(0x3eb6d58), HASH(0x3eb74b8)) called at /home/cvargas/maker/bin/../lib/Process/MpiChunk.pm line 4215 Process::MpiChunk::_go(Process::MpiChunk=HASH(0x3e90218), "run", HASH(0x3e81748), 1, 4) called at /home/cvargas/maker/bin/../lib/Process/MpiChunk.pm line 341 Process::MpiChunk::run(Process::MpiChunk=HASH(0x3e90218), 0) called at /home/cvargas/maker/bin/../lib/Process/MpiChunk.pm line 357 Process::MpiChunk::run_all(Process::MpiChunk=HASH(0x3e90218), 0) called at /home/cvargas/maker/bin/../lib/Process/MpiTiers.pm line 287 Process::MpiTiers::run_all(Process::MpiTiers=HASH(0x3ea34b8), 0) called at /home/cvargas/maker/bin/../lib/Process/MpiTiers.pm line 287 Process::MpiTiers::run_all(Process::MpiTiers=HASH(0x3e733e8), 0) called at /home/cvargas/maker/bin/maker line 670 --> rank=NA, hostname=Ritchie ERROR: Failed while annotating transcripts ERROR: Chunk failed at level:1, tier_type:4 FAILED CONTIG:2973 ERROR: Chunk failed at level:6, tier_type:0 FAILED CONTIG:2973 examining contents of the fasta file and run log -------------- next part -------------- An HTML attachment was scrubbed... URL: From Ambrose.Andongabo at rothamsted.ac.uk Thu Jan 23 04:19:50 2014 From: Ambrose.Andongabo at rothamsted.ac.uk (Ambrose Andongabo (RRes-Roth)) Date: Thu, 23 Jan 2014 11:19:50 +0000 Subject: [maker-devel] MAKER annotation and Trinity output Message-ID: Dear all, I am using the latest version of MAKER and I keep on getting this error message when I activate fgenesh gene predictor in the maker_opts.ctl file. It runs successfully when using SNAP, GeneMark and AUGUSTUS. If I do not provide my ESTs evidence in the form of Trinity output, the pipeline will run successfully using all the four gene predictors including fgenesh. I wonder if someone encountered such a problem before #--------- command -------------# Widget::fgenesh: /home/data/MAKER_2.30/maker/bin/../lib/Widget/fgenesh/fgenesh_wrap /home/data/mg_annotation/fgenesh/fgenesh /home/data/mg_annotation/fgenesh/Fusarium /tmp/maker_cAePfY/0/164_0.557-1163.Fusarium.auto_annotator.fgenesh.fasta -exon_table:/tmp/maker_cAePfY/0/164_0.557-1163.Fusarium.auto_annotator.xdef.fgenesh > /tmp/maker_cAePfY/0/164_0.557-1163.Fusarium.auto_annotator.fgenesh #-------------------------------# ERROR: FGENESH Failed ERROR: FgenesH failed --> rank=NA, hostname=vnc.rothamsted.ac.uk ERROR: Failed while annotating transcripts ERROR: Chunk failed at level:1, tier_type:4 FAILED CONTIG:contig_1 ERROR: Chunk failed at level:6, tier_type:0 FAILED CONTIG:contig_1 examining contents of the fasta file and run log I will be grateful for your contribution Thanks Ambrose -- This message has been scanned for viruses and dangerous content by MailScanner, and we believe but do not warrant that this e-mail and any attachments thereto do not contain any viruses. However, you are fully responsible for performing any virus scanning. -------------- next part -------------- An HTML attachment was scrubbed... URL: From carson.holt at genetics.utah.edu Thu Jan 23 08:54:05 2014 From: carson.holt at genetics.utah.edu (Carson Holt) Date: Thu, 23 Jan 2014 15:54:05 +0000 Subject: [maker-devel] regarding MAKER In-Reply-To: <979080620.2022.1390472597931.JavaMail.root@mail.icgeb.res.in> References: <765683564.2020.1390472529829.JavaMail.root@mail.icgeb.res.in> <979080620.2022.1390472597931.JavaMail.root@mail.icgeb.res.in> Message-ID: Hi Nadita, You appear to be using input files with spaces in their names. It?s best to avoid whitespace in file names for linux based programs, as they will not always be interpreted correctly. Thanks, Carson On 1/23/14, 3:23 AM, "Nandita Pasari" wrote: > >Sir, > >I am trying to run maker from bin. >I was successful in running the example data but as I proceeded to a >second run from the bin folder I am getting an error as follows: > > >STATUS: Parsing control files... >STATUS: Processing and indexing input FASTA files... >mv: target `435.maker.output/mpi_blastdb/te_proteins%2Efasta.mpi.10.0/' >is not a directory >mv: target `435.maker.output/mpi_blastdb/te_proteins%2Efasta.mpi.10/' is >not a directory >ERROR: SplitDB not created correctly > > at /home/shams/Downloads/maker/bin/../lib/GI.pm line 1116. > GI::split_db("/home/shams/Downloads/maker/data/te_proteins.fasta", >"protein", 10, "/home/shams/Downloads/maker/bin/contig >435.maker.output/mpi_b"..., "C") called at maker line 518 >--> rank=NA, hostname=shams-ThinkCentre-M90p > >How can this be rectified? > >Nandita Pasari >Pre Doctoral Fellow >Synthetic Biology and Biofuels Group >ICGEB >New Delhi > From nandita at icgeb.res.in Thu Jan 23 03:23:17 2014 From: nandita at icgeb.res.in (Nandita Pasari) Date: Thu, 23 Jan 2014 15:53:17 +0530 (IST) Subject: [maker-devel] regarding MAKER In-Reply-To: <765683564.2020.1390472529829.JavaMail.root@mail.icgeb.res.in> Message-ID: <979080620.2022.1390472597931.JavaMail.root@mail.icgeb.res.in> Sir, I am trying to run maker from bin. I was successful in running the example data but as I proceeded to a second run from the bin folder I am getting an error as follows: STATUS: Parsing control files... STATUS: Processing and indexing input FASTA files... mv: target `435.maker.output/mpi_blastdb/te_proteins%2Efasta.mpi.10.0/' is not a directory mv: target `435.maker.output/mpi_blastdb/te_proteins%2Efasta.mpi.10/' is not a directory ERROR: SplitDB not created correctly at /home/shams/Downloads/maker/bin/../lib/GI.pm line 1116. GI::split_db("/home/shams/Downloads/maker/data/te_proteins.fasta", "protein", 10, "/home/shams/Downloads/maker/bin/contig 435.maker.output/mpi_b"..., "C") called at maker line 518 --> rank=NA, hostname=shams-ThinkCentre-M90p How can this be rectified? Nandita Pasari Pre Doctoral Fellow Synthetic Biology and Biofuels Group ICGEB New Delhi From carsonhh at gmail.com Thu Jan 23 10:51:50 2014 From: carsonhh at gmail.com (Carson Holt) Date: Thu, 23 Jan 2014 10:51:50 -0700 Subject: [maker-devel] Problem before running ab-initio predictors In-Reply-To: References: Message-ID: Could you make sure trna=0 is set in the maker_opt.ctl file, and leave that off for the time being. It is a new feature that was added since 2.28, and may be a little buggy. I?ll try and replicate the error here. Could you send me a copy of your maker_opts.ctl file. For the mean time just turn off the trna option and you should be able to run, you can always run with trna=1 later (even by itself as a separate run) without loosing anything. Thanks, Carson From: carlos vargas Date: Wednesday, January 22, 2014 at 5:34 PM To: "maker-devel at yandell-lab.org" Subject: [maker-devel] Problem before running ab-initio predictors Hello, I finally was able to install maker with mpi support, however now I see a new error which I wasn't seeing before. Both for mpiexec and single maker runs I observe the following error just after it finishes running exonerate. Thank you for your time! Carlos deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation cleaning clusters.... total clusters:1 now processing 0 cleaning clusters.... total clusters:1 now processing 0 annotating transcripts Making transcripts ...processing 0 of 1 ERROR: Not a valid predictor in auto_annoator::get_pred_shot at /home/cvargas/maker/bin/../lib/maker/auto_annotator.pm line 2155. maker::auto_annotator::get_pred_shot(FastaSeq=HASH(0x3eb6920), ">2973", "/gnmP05/Carlos/mpiannotatetest/longest.maker.output/longest_d"..., undef, HASH(0x3eeb9f8), 0, "trnascan", HASH(0x3fb1f80), runlog=HASH(0x3ec6e38), ...) called at /home/cvargas/maker/bin/../lib/maker/auto_annotator.pm line 1923 maker::auto_annotator::run_it(ARRAY(0x3fab4d0), "/gnmP05/Carlos/mpiannotatetest/longest.maker.output/longest_d"..., FastaSeq=HASH(0x3eb6920), FastaSeq=HASH(0x3ed42d0), ">2973", "trnascan", HASH(0x3fb1f80)) called at /home/cvargas/maker/bin/../lib/maker/auto_annotator.pm line 920 maker::auto_annotator::annotate_trans(FastaSeq=HASH(0x3ed42d0), FastaSeq=HASH(0x3eb6920), ">2973", 2973, ARRAY(0x3e818f8), "/gnmP05/Carlos/mpiannotatetest/longest.maker.output/longest_d"..., HASH(0x3fb1f80), runlog=HASH(0x3ec6e38)) called at /home/cvargas/maker/bin/../lib/Process/MpiChunk.pm line 3775 Process::MpiChunk::__ANON__() called at /home/cvargas/maker/bin/../lib/Error.pm line 415 eval {...} called at /home/cvargas/maker/bin/../lib/Error.pm line 407 Error::subs::try(CODE(0x3eb6d58), HASH(0x3eb74b8)) called at /home/cvargas/maker/bin/../lib/Process/MpiChunk.pm line 4215 Process::MpiChunk::_go(Process::MpiChunk=HASH(0x3e90218), "run", HASH(0x3e81748), 1, 4) called at /home/cvargas/maker/bin/../lib/Process/MpiChunk.pm line 341 Process::MpiChunk::run(Process::MpiChunk=HASH(0x3e90218), 0) called at /home/cvargas/maker/bin/../lib/Process/MpiChunk.pm line 357 Process::MpiChunk::run_all(Process::MpiChunk=HASH(0x3e90218), 0) called at /home/cvargas/maker/bin/../lib/Process/MpiTiers.pm line 287 Process::MpiTiers::run_all(Process::MpiTiers=HASH(0x3ea34b8), 0) called at /home/cvargas/maker/bin/../lib/Process/MpiTiers.pm line 287 Process::MpiTiers::run_all(Process::MpiTiers=HASH(0x3e733e8), 0) called at /home/cvargas/maker/bin/maker line 670 --> rank=NA, hostname=Ritchie ERROR: Failed while annotating transcripts ERROR: Chunk failed at level:1, tier_type:4 FAILED CONTIG:2973 ERROR: Chunk failed at level:6, tier_type:0 FAILED CONTIG:2973 examining contents of the fasta file and run log _______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org -------------- next part -------------- An HTML attachment was scrubbed... URL: From carsonhh at gmail.com Fri Jan 24 11:32:08 2014 From: carsonhh at gmail.com (Carson Holt) Date: Fri, 24 Jan 2014 11:32:08 -0700 Subject: [maker-devel] MAKER annotation and Trinity output Message-ID: Hi Ambrose, It is likely caused by an issue with hints being generated for Fgenesh, I?ve attached an updated module to be placed here ?> .../maker/lib/Widget/fgenesh.pm. I will also integrate this into the MAKER download. Thanks, Carson From: "Ambrose Andongabo (RRes-Roth)" Date: Thursday, January 23, 2014 at 4:19 AM To: "maker-devel at yandell-lab.org" Subject: [maker-devel] MAKER annotation and Trinity output Dear all, I am using the latest version of MAKER and I keep on getting this error message when I activate fgenesh gene predictor in the maker_opts.ctl file. It runs successfully when using SNAP, GeneMark and AUGUSTUS. If I do not provide my ESTs evidence in the form of Trinity output, the pipeline will run successfully using all the four gene predictors including fgenesh. I wonder if someone encountered such a problem before #--------- command -------------# Widget::fgenesh: /home/data/MAKER_2.30/maker/bin/../lib/Widget/fgenesh/fgenesh_wrap /home/data/mg_annotation/fgenesh/fgenesh /home/data/mg_annotation/fgenesh/Fusarium /tmp/maker_cAePfY/0/164_0.557-1163.Fusarium.auto_annotator.fgenesh.fasta -exon_table:/tmp/maker_cAePfY/0/164_0.557-1163.Fusarium.auto_annotator.xdef. fgenesh > /tmp/maker_cAePfY/0/164_0.557-1163.Fusarium.auto_annotator.fgenesh #-------------------------------# ERROR: FGENESH Failed ERROR: FgenesH failed --> rank=NA, hostname=vnc.rothamsted.ac.uk ERROR: Failed while annotating transcripts ERROR: Chunk failed at level:1, tier_type:4 FAILED CONTIG:contig_1 ERROR: Chunk failed at level:6, tier_type:0 FAILED CONTIG:contig_1 examining contents of the fasta file and run log I will be grateful for your contribution Thanks Ambrose -- This message has been scanned for viruses and dangerous content by MailScanner , and we believe but do not warrant that this e-mail and any attachments thereto do not contain any viruses. However, you are fully responsible for performing any virus scanning. _______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: fgenesh.pm Type: text/x-perl-script Size: 19742 bytes Desc: not available URL: From Ambrose.Andongabo at rothamsted.ac.uk Mon Jan 27 03:44:24 2014 From: Ambrose.Andongabo at rothamsted.ac.uk (Ambrose Andongabo (RRes-Roth)) Date: Mon, 27 Jan 2014 10:44:24 +0000 Subject: [maker-devel] Trinity and fgenesh wrapper for MAKER Message-ID: Dear Carson, Many thanks for the quick fix to the fgenesh.pm perl module in MAKER. I ran the annotation over the weekend and obtained the desired results. Thanks Ambrose -- This message has been scanned for viruses and dangerous content by MailScanner, and we believe but do not warrant that this e-mail and any attachments thereto do not contain any viruses. However, you are fully responsible for performing any virus scanning. -------------- next part -------------- An HTML attachment was scrubbed... URL: From Michael.Li3 at AGR.GC.CA Mon Jan 27 09:17:29 2014 From: Michael.Li3 at AGR.GC.CA (Li, Michael) Date: Mon, 27 Jan 2014 16:17:29 +0000 Subject: [maker-devel] Transcriptome Assmeblies for Protein Evidence Message-ID: <229AF11430CC544B8987653593A750A98765E327@ONOTTAXES3.AGR.GC.CA> Hi everyone, I've been tasked to run MAKER on a genome that we have recently sequenced and assembled de novo. Along with the genome, the transcriptome has also been assembled using SOAPdenovo. I've been told that we've experimented with different kmers, but I'm not sure which kmer is ideal for use. One kmer assembly has the highest N50 for contigs, while another has the highest N50 for scaffolds, but it comes with a lot of gaps. Would gaps impact how MAKER handles evidence alignment or the overall annotation? Or would either work well with MAKER? Thanks in advance! Michael Li Co-op Student From carsonhh at gmail.com Mon Jan 27 09:22:57 2014 From: carsonhh at gmail.com (Carson Holt) Date: Mon, 27 Jan 2014 09:22:57 -0700 Subject: [maker-devel] Transcriptome Assmeblies for Protein Evidence Message-ID: You should use the scaffolds. Large gaps will not affect the annotation and are common in the scaffolds of all newly assembled genomes. Thanks, Carson On 1/27/14, 9:17 AM, "Li, Michael" wrote: >Hi everyone, > >I've been tasked to run MAKER on a genome that we have recently sequenced >and assembled de novo. Along with the genome, the transcriptome has also >been assembled using SOAPdenovo. I've been told that we've experimented >with different kmers, but I'm not sure which kmer is ideal for use. > >One kmer assembly has the highest N50 for contigs, while another has the >highest N50 for scaffolds, but it comes with a lot of gaps. > >Would gaps impact how MAKER handles evidence alignment or the overall >annotation? Or would either work well with MAKER? > >Thanks in advance! > >Michael Li >Co-op Student > >_______________________________________________ >maker-devel mailing list >maker-devel at box290.bluehost.com >http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org From carsonhh at gmail.com Mon Jan 27 10:27:28 2014 From: carsonhh at gmail.com (Carson Holt) Date: Mon, 27 Jan 2014 10:27:28 -0700 Subject: [maker-devel] Trinity and fgenesh wrapper for MAKER In-Reply-To: References: Message-ID: Thanks for letting me know. I?m glad it?s working. ?Carson From: "Ambrose Andongabo (RRes-Roth)" Date: Monday, January 27, 2014 at 3:44 AM To: Carson Holt , "maker-devel at yandell-lab.org" Subject: Trinity and fgenesh wrapper for MAKER Dear Carson, Many thanks for the quick fix to the fgenesh.pm perl module in MAKER. I ran the annotation over the weekend and obtained the desired results. Thanks Ambrose -- This message has been scanned for viruses and dangerous content by MailScanner , and we believe but do not warrant that this e-mail and any attachments thereto do not contain any viruses. However, you are fully responsible for performing any virus scanning. -------------- next part -------------- An HTML attachment was scrubbed... URL: From carson.holt at genetics.utah.edu Mon Jan 27 11:29:21 2014 From: carson.holt at genetics.utah.edu (Carson Holt) Date: Mon, 27 Jan 2014 18:29:21 +0000 Subject: [maker-devel] MAKER failing In-Reply-To: References: Message-ID: You need to supply the captured STDERR from your maker run. The cause of any failure will be printed to the screen Thanks, Carson From: Seth Munholland > Date: Monday, January 27, 2014 at 11:24 AM To: > Subject: MAKER failing Hello Everyone, I recently installed MAKER 2.28 and the installation went smoothly. When I ran it on my assembly the first time I didn't properly configure the CTL files and so genemark and snap were not run (I didn't supply hmm links). After correcting this and running MAKER again my log file consists of nothing but STARTED...FAILED. I don't know what files would be useful to attach to help figure out the problem, so I'm starting with the CTL.log files I used and the resultant master_datastore_index.log file. Any input would be greatly appreciated. Seth Munholland, B.Sc. Department of Biological Sciences Rm. 304 Biology Building University of Windsor 401 Sunset Ave. N9B 3P4 T: (519) 253-3000 Ext: 4755 -------------- next part -------------- An HTML attachment was scrubbed... URL: From munholl at uwindsor.ca Mon Jan 27 11:24:17 2014 From: munholl at uwindsor.ca (Seth Munholland) Date: Mon, 27 Jan 2014 13:24:17 -0500 Subject: [maker-devel] MAKER failing Message-ID: Hello Everyone, I recently installed MAKER 2.28 and the installation went smoothly. When I ran it on my assembly the first time I didn't properly configure the CTL files and so genemark and snap were not run (I didn't supply hmm links). After correcting this and running MAKER again my log file consists of nothing but STARTED...FAILED. I don't know what files would be useful to attach to help figure out the problem, so I'm starting with the CTL.log files I used and the resultant master_datastore_index.log file. Any input would be greatly appreciated. Seth Munholland, B.Sc. Department of Biological Sciences Rm. 304 Biology Building University of Windsor 401 Sunset Ave. N9B 3P4 T: (519) 253-3000 Ext: 4755 -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: maker_bopts.log Type: text/x-log Size: 1412 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: maker_exe.log Type: text/x-log Size: 1308 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: maker_opts.log Type: text/x-log Size: 4711 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: OAC_Rex_AllPathsLG_Scaffolds_master_datastore_index.log Type: text/x-log Size: 2434292 bytes Desc: not available URL: From sbrubaker at solazyme.com Mon Jan 27 12:27:41 2014 From: sbrubaker at solazyme.com (Shane Brubaker) Date: Mon, 27 Jan 2014 19:27:41 +0000 Subject: [maker-devel] Introduction Message-ID: <61D01ACB70C1E141A150BA9F586D5BFA50EFC711@EXCHANGE-MB01.internal.solazyme.com> Hello, I'd like to introduce you to Mike D'Eletto. He is developing an open-source deep functional annotation pipeline to run numerous downstream program on predicted genes. I was wondering if this could be something interesting to bundle with MAKER. I met a person, I forget their name, at PAG 2014 who was involved with MAKER, and we discussed it briefly. I think it could be a beneficial idea. Thanks! - Shane Brubaker -------------- next part -------------- An HTML attachment was scrubbed... URL: From bmoore at genetics.utah.edu Mon Jan 27 18:54:41 2014 From: bmoore at genetics.utah.edu (Barry Moore) Date: Tue, 28 Jan 2014 01:54:41 +0000 Subject: [maker-devel] Introduction In-Reply-To: <61D01ACB70C1E141A150BA9F586D5BFA50EFC711@EXCHANGE-MB01.internal.solazyme.com> References: <61D01ACB70C1E141A150BA9F586D5BFA50EFC711@EXCHANGE-MB01.internal.solazyme.com> Message-ID: <6D6E50E3-0FAD-4E49-A1CA-6650C035E964@genetics.utah.edu> Thanks Shane and hi Mike. Sounds cool - is there a link to the tool? B Barry Moore Research Scientist Dept. Human Genetics University of Utah On Jan 27, 2014, at 12:30 PM, "Shane Brubaker" > wrote: Hello, I?d like to introduce you to Mike D?Eletto. He is developing an open-source deep functional annotation pipeline to run numerous downstream program on predicted genes. I was wondering if this could be something interesting to bundle with MAKER. I met a person, I forget their name, at PAG 2014 who was involved with MAKER, and we discussed it briefly. I think it could be a beneficial idea. Thanks! - Shane Brubaker _______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org -------------- next part -------------- An HTML attachment was scrubbed... URL: From jcjb at cam.ac.uk Tue Jan 28 05:14:03 2014 From: jcjb at cam.ac.uk (Jenny Barna) Date: Tue, 28 Jan 2014 12:14:03 +0000 (GMT) Subject: [maker-devel] WARNING: Multiple MAKER processes... Message-ID: We have had maker since 2010. Maker 2.10 and 2.11 compiled with mpich2 were and still are working with mpi as far as I can tell. These have a binary called mpi_maker. I have kept the same mpich2 installed to try to make sure things stay working. It has been picked up by subsequent maker builds. It is mpich2-1.2.1p1 . I have seen the posting by Marc P. Hoeppner on 10/26/13 about 'WARNING: Multiple MAKER processes have been started in the same directory.' which is the same warning I have had. Trying all my previous installations I now see this is happening in all 2.2? distributions I have. Versions 2.10/2.11 are not doing this. It is happening with 2.2?/2.30p where no separate mpi_maker binary is made. Trying new mpich 3.0.4 as advised in the posting by Marc has not worked. It appears to build but fails at once with severe mpi errors. Tests included with that mpi distro worked. I am aware the maker WARNING behaviour is indicative of mpi types having become mixed but have not been able to correct. Jenny Barna | jcjb at cam.ac.uk Bioinformatics and Computational Biology | computing.bio.cam.ac.uk Dept of Biochemistry | +44 1223 333644 80 Tennis Court Road, Cambridge, CB2 1GA, UK From sbrubaker at solazyme.com Tue Jan 28 10:34:16 2014 From: sbrubaker at solazyme.com (Shane Brubaker) Date: Tue, 28 Jan 2014 17:34:16 +0000 Subject: [maker-devel] Introduction In-Reply-To: <6D6E50E3-0FAD-4E49-A1CA-6650C035E964@genetics.utah.edu> References: <61D01ACB70C1E141A150BA9F586D5BFA50EFC711@EXCHANGE-MB01.internal.solazyme.com> <6D6E50E3-0FAD-4E49-A1CA-6650C035E964@genetics.utah.edu> Message-ID: <61D01ACB70C1E141A150BA9F586D5BFA50EFCB79@EXCHANGE-MB01.internal.solazyme.com> He has not put it out yet but can send you a link once it's ready. :) From: Barry Moore [mailto:bmoore at genetics.utah.edu] Sent: Monday, January 27, 2014 5:55 PM To: Shane Brubaker Cc: maker-devel at yandell-lab.org; Mike D'Eletto (mikedeletto at gmail.com) Subject: Re: [maker-devel] Introduction Thanks Shane and hi Mike. Sounds cool - is there a link to the tool? B Barry Moore Research Scientist Dept. Human Genetics University of Utah On Jan 27, 2014, at 12:30 PM, "Shane Brubaker" > wrote: Hello, I'd like to introduce you to Mike D'Eletto. He is developing an open-source deep functional annotation pipeline to run numerous downstream program on predicted genes. I was wondering if this could be something interesting to bundle with MAKER. I met a person, I forget their name, at PAG 2014 who was involved with MAKER, and we discussed it briefly. I think it could be a beneficial idea. Thanks! - Shane Brubaker _______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org -------------- next part -------------- An HTML attachment was scrubbed... URL: From carsonhh at gmail.com Tue Jan 28 10:58:03 2014 From: carsonhh at gmail.com (Carson Holt) Date: Tue, 28 Jan 2014 10:58:03 -0700 Subject: [maker-devel] WARNING: Multiple MAKER processes... In-Reply-To: References: Message-ID: Hi Jenny, There are three locations that are key to running with MPI. 1. The location of mpicc 2. the location of mpi.h 3. the location of mpiexec These files are common to all MPI flavors, but are incompatible between MPI flavor and version. For example, if you use mpicc to compile with the wrong mpi.h, it will fail. If you compile and then try and execute with the wrong mpiexec, it will fail. So you need to make sure all 3 are coming from the same version when running maker or any MPI program. A common mistake is to just call mpiexec direct on the command line. Your system may in fact call the wrong mpiexec when you do that (use ?which mpiexec? to see which one is being called when you just type mpiexec). Also when configuring MAKER, manually review the path to mpicc and mpi.h given during the ?perl Build.PL? configuration step to make sure they are coming from the same version and flavor of MPI. Also there is no mpi_maker. The standard 'maker' command will now be MPI enabled if you say ?yes' to the 'configure for MPI' question during the 'perl Build.PL' step of the install. I just installed MPICH3 and ran MAKER on a test job. Here is what I did step-by-step ?> #first install MPICH3 wget http://www.mpich.org/static/downloads/3.0.4/mpich-3.0.4.tar.gz tar -zxvf mpich-3.0.4.tar.gz cd mpich-3.0.4 #note that I configure with shared libraries enabled *this is not the default!! #also set prefix to wherever you want it installed ./configure --enable-shared=yes --prefix=/usr/local/mpich3 make make install #now cofigure MAKER cd /usr/local/maker/src perl Build.PL #say yes to MPI question #give full path to mpicc ?> /usr/local/mpich3/bin/mpicc #give full path to mpi.h containing directory ?> /usr/local/mpich3/include ./Build ./Build install #test using full paths to executables /usr/local/mpich3/bin/mpiexec -n 3 /usr/local/maker/bin/maker In addition, use MAKER 2.30. It has the best MPI performance of any version of MAKER. Also you can use OpenMPI rather than MPICH if you choose. It actually scales better than MPICH. The main difference is that you must set LD_PRELOAD to the location of libmpi.so before even trying to install MAKER. It must also be set before running MAKER (or any program that uses OpenMPI's shared libraries), so it's best just to add it to your ~/.bash_profile. (i.e. export LD_PRELOAD=/usr/local/openmpi/lib/libmpi.so). Note however that having this set will cause errors for MPICH, so be careful if switching back and forth between MPI flavors. Thanks, Carson On 1/28/14, 5:14 AM, "Jenny Barna" wrote: > >We have had maker since 2010. Maker 2.10 and 2.11 compiled with mpich2 >were and still are working with mpi as far as I can tell. These have >a binary called mpi_maker. > >I have kept the same mpich2 installed to try to make sure things stay >working. It has been picked up by subsequent maker builds. >It is mpich2-1.2.1p1 . > >I have seen the posting by Marc P. Hoeppner on 10/26/13 about >'WARNING: Multiple MAKER processes have been started in the same >directory.' which is the same warning I have had. > >Trying all my previous installations I now see this is happening in all >2.2? distributions I have. Versions 2.10/2.11 are not doing this. >It is happening with 2.2?/2.30p where no separate mpi_maker binary is >made. > >Trying new mpich 3.0.4 as advised in the posting by Marc has not worked. >It appears to build but fails at once with severe mpi errors. Tests >included >with that mpi distro worked. > >I am aware the maker WARNING behaviour is indicative of mpi types having >become mixed but have not been able to correct. > > > >Jenny Barna | jcjb at cam.ac.uk >Bioinformatics and Computational Biology | computing.bio.cam.ac.uk >Dept of Biochemistry | +44 1223 333644 >80 Tennis Court Road, Cambridge, CB2 1GA, UK > > >_______________________________________________ >maker-devel mailing list >maker-devel at box290.bluehost.com >http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org From barry.utah at gmail.com Wed Jan 29 20:58:37 2014 From: barry.utah at gmail.com (Barry Moore) Date: Wed, 29 Jan 2014 20:58:37 -0700 Subject: [maker-devel] Genome Annotation Library (Version 0.2.2) Message-ID: The Sequence Ontology is please to announce the release of the Genome Annotation Library (GAL) Version 0.2.2. GAL is a library of Perl modules that makes working with sequence features in GFF3/GVF files straight forward and intuitive. GAL also provides numerous parser classes for converting other formats to GFF3 and makes writing new parsers easy. GAL takes advantage of the ontology based relationships captured in SO-based sequence feature data to allow users to easily traverse the relationships between features in a GFF3 file. In addition to the GAL programming library many scripts utilizing the library are included as well as several stand-alone scripts for working with GFF/GVF and other genomic dataset. Updates in this version include: -Adding bin/footprint script -Adding gal_indexer script -Adding bin/gene_CDS_footprint script -New CPAN style html docs for GAL -Updates to gtf2gff3 -Adding warnings when mrna.pm can not return CDS or protein sequence -Added progress counter to Storage::SQLite::load_files -Adding --template option to gff_tool -Adding templates/gff_tool_gvf_example2.tt -Adding gal_remove_transcripts and gal_gff_tool -Adding fix_gvf function to bin/gff_tool -Added --clean to gal_protein_genes -Adding GAL::Base::open_file For more information, to access the GAL docs and to download GAL code please visit: http://www.sequenceontology.org/software/GAL.html Barry Moore Research Scientist Dept. of Human Genetics Dept. of Biomedical Informatics University of Utah Salt Lake City, UT 84112 -------------------------------------------- (801) 585-3543 -------------- next part -------------- An HTML attachment was scrubbed... URL: From S.M.Schmidt at uva.nl Thu Jan 30 07:30:18 2014 From: S.M.Schmidt at uva.nl (Schmidt, Sarah) Date: Thu, 30 Jan 2014 14:30:18 +0000 Subject: [maker-devel] Maker fails to annotate large contigs Message-ID: Dear Carson, When running maker on my genome assembly (roughly 60 Mb), it keeps failing the largest contigs with either error: DIED RANK 3:4:0:3 DIED COUNT 2 or DIED RANK 4:4:0:0 DIED COUNT 1 DIED RANK 4 DIED COUNT 1. Do you know what might be the problem? I am using Maker 2.28 with MPI support. Thanks in advance, Sarah -------------- next part -------------- An HTML attachment was scrubbed... URL: From carsonhh at gmail.com Thu Jan 30 08:04:28 2014 From: carsonhh at gmail.com (Carson Holt) Date: Thu, 30 Jan 2014 08:04:28 -0700 Subject: [maker-devel] Maker fails to annotate large contigs Message-ID: What are the errors from the STDERR printed to screen? That will tell you the specifics of why it is failing. Redirect to a file to capture it and I can take a look as well. Note you may need to set a higher number of retries to get it to run again. Thanks, Carson From: "Schmidt, Sarah" Date: Thursday, January 30, 2014 at 7:30 AM To: "maker-devel at yandell-lab.org" Subject: [maker-devel] Maker fails to annotate large contigs Dear Carson, When running maker on my genome assembly (roughly 60 Mb), it keeps failing the largest contigs with either error: DIED RANK 3:4:0:3 DIED COUNT 2 or DIED RANK 4:4:0:0 DIED COUNT 1 DIED RANK 4 DIED COUNT 1. Do you know what might be the problem? I am using Maker 2.28 with MPI support. Thanks in advance, Sarah _______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org -------------- next part -------------- An HTML attachment was scrubbed... URL: From darasappan at gmail.com Thu Jan 30 11:18:48 2014 From: darasappan at gmail.com (dhivya arasappan) Date: Thu, 30 Jan 2014 12:18:48 -0600 Subject: [maker-devel] maker annotation with cufflinks output Message-ID: <516896DE-1ACB-460B-9842-90E12CB72343@gmail.com> Hello, I am trying to annotate a 200 mb plant genome for which I have a very good assembly. I tried to denovo assemble RNA-seq data using trinity and ran maker using my genome assembly and the trinity results. I did not get as many transcripts as expected, around 10,000 transcripts. So, I decided to try a different approach. I did a genome assisted assembly of the RNA-seq data using tophat/cufflinks. This pipeline generated 21,000 genes, 29,000 transcripts. I then ran maker using my genome assembly and the cufflinks result. I get much less number of transcripts as a result. If cufflinks found 29000 transcripts by mapping to the genome, I'm confused as to why maker is not finding the same. Any suggestions would be appreciated. Thanks Dhivya From dence at genetics.utah.edu Thu Jan 30 13:51:10 2014 From: dence at genetics.utah.edu (Daniel Ence) Date: Thu, 30 Jan 2014 20:51:10 +0000 Subject: [maker-devel] maker annotation with cufflinks output In-Reply-To: <516896DE-1ACB-460B-9842-90E12CB72343@gmail.com> References: <516896DE-1ACB-460B-9842-90E12CB72343@gmail.com> Message-ID: Hi Dhivya, I think there a few numbers that could be helpful to understand what's happening here. How many transcripts did Trinity assembly the RNA-seq data into? Also, you had 29,000 transcripts from cufflinks, but fewer from MAKER when you gave it the cufflinks data. How many transcripts did MAKER identify with the cufflinks data? Did you still get more than the 10,000 transcripts that you found with just the Trinity data? A key part of MAKER's approach to genome annotation that might be affecting it's performance is that it only annotates a gene where there is both evidence (like your RNA-seq data) and an ab-initio prediction. If a prediction is unsupported by the evidence, then MAKER won't annotate a gene and if evidence aligns where there's no prediction, MAKER won't annotate a gene either. What ab-initio predictors are you using and have they been trained specific genome? You can force MAKER to automatically promote evidence alignments to a gene model by setting the est2genome option to 1, but that will usually give you many false positives. Try rerunning it with either the Trinity data or the Cufflinks data and with est2genome set to 1, and let us know how that affects the MAKER results. Thanks, Daniel Daniel Ence Graduate Student Eccles Institute of Human Genetics University of Utah 15 North 2030 East, Room 2100 Salt Lake City, UT 84112-5330 ________________________________________ From: maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of dhivya arasappan [darasappan at gmail.com] Sent: Thursday, January 30, 2014 11:18 AM To: maker-devel at yandell-lab.org Subject: [maker-devel] maker annotation with cufflinks output Hello, I am trying to annotate a 200 mb plant genome for which I have a very good assembly. I tried to denovo assemble RNA-seq data using trinity and ran maker using my genome assembly and the trinity results. I did not get as many transcripts as expected, around 10,000 transcripts. So, I decided to try a different approach. I did a genome assisted assembly of the RNA-seq data using tophat/cufflinks. This pipeline generated 21,000 genes, 29,000 transcripts. I then ran maker using my genome assembly and the cufflinks result. I get much less number of transcripts as a result. If cufflinks found 29000 transcripts by mapping to the genome, I'm confused as to why maker is not finding the same. Any suggestions would be appreciated. Thanks Dhivya _______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org From darasappan at gmail.com Thu Jan 30 14:00:07 2014 From: darasappan at gmail.com (dhivya arasappan) Date: Thu, 30 Jan 2014 15:00:07 -0600 Subject: [maker-devel] maker annotation with cufflinks output Message-ID: <8B185515-42FE-4EB2-8275-FE090541E49B@gmail.com> Hello, I am trying to annotate a 200 mb plant genome for which I have a very good assembly. I tried to denovo assemble RNA-seq data using trinity and ran maker using my genome assembly and the trinity results. I did not get as many transcripts as expected, around 10,000 transcripts. So, I decided to try a different approach. I did a genome assisted assembly of the RNA-seq data using tophat/cufflinks. This pipeline generated 21,000 genes, 29,000 transcripts. I then ran maker using my genome assembly and the cufflinks result. I get much less number of transcripts as a result. If cufflinks found 29000 transcripts by mapping to the genome, I'm confused as to why maker is not finding the same. Any suggestions would be appreciated. Thanks Dhivya From carsonhh at gmail.com Thu Jan 30 14:14:53 2014 From: carsonhh at gmail.com (Carson Holt) Date: Thu, 30 Jan 2014 14:14:53 -0700 Subject: [maker-devel] maker annotation with cufflinks output In-Reply-To: References: <516896DE-1ACB-460B-9842-90E12CB72343@gmail.com> Message-ID: What you get back from cufflinks should not necessarily be considered a transcript count, and you should always expect the count given by cufflinks to be high relative to assembly methods like trinity (especially in plants). This is because repetitive elements, spurious alignments, and pseudogenes will all inflate the count because it is an alignment based method which can be more sensitive but will also generate a lot of false positives. Fortunately the false positives will mostly be singe exon results and will be filtered out by maker. Also your mRNA-seq data from cufflinks will contribute to hints that can generate genes in the absence of an ab-intio gene prediction, but if the gene finder doesn?t think the hints make sense it will ignore them. So a lot of cufflinks results that don?t make sense with respect to ORF etc., will fall into the category of being ignored. In addition, you should try running your pipeline through CEGMA (http://korflab.ucdavis.edu/datasets/cegma/) to identify the expected completeness of the genome. For example if a genome of 70% completeness then you only expect to recover 70% of the genes. I believe CEGMA can also be run online from the iPlant discovery environment and iPlant atmosphere images. Also make sure you are including proteins with your MAKER run, as not all genes will be expressed, so mRNAseq will only capture a portion of the genes and that portion can be as low as 50%. Thanks, Carson On 1/30/14, 1:51 PM, "Daniel Ence" wrote: >Hi Dhivya, > >I think there a few numbers that could be helpful to understand what's >happening here. > >How many transcripts did Trinity assembly the RNA-seq data into? Also, >you had 29,000 transcripts from cufflinks, but fewer from MAKER when you >gave it the cufflinks data. How many transcripts did MAKER identify with >the cufflinks data? Did you still get more than the 10,000 transcripts >that you found with just the Trinity data? > >A key part of MAKER's approach to genome annotation that might be >affecting it's performance is that it only annotates a gene where there >is both evidence (like your RNA-seq data) and an ab-initio prediction. If >a prediction is unsupported by the evidence, then MAKER won't annotate a >gene and if evidence aligns where there's no prediction, MAKER won't >annotate a gene either. What ab-initio predictors are you using and have >they been trained specific genome? > >You can force MAKER to automatically promote evidence alignments to a >gene model by setting the est2genome option to 1, but that will usually >give you many false positives. > >Try rerunning it with either the Trinity data or the Cufflinks data and >with est2genome set to 1, and let us know how that affects the MAKER >results. > >Thanks, >Daniel > >Daniel Ence >Graduate Student >Eccles Institute of Human Genetics >University of Utah >15 North 2030 East, Room 2100 >Salt Lake City, UT 84112-5330 >________________________________________ >From: maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of >dhivya arasappan [darasappan at gmail.com] >Sent: Thursday, January 30, 2014 11:18 AM >To: maker-devel at yandell-lab.org >Subject: [maker-devel] maker annotation with cufflinks output > >Hello, > >I am trying to annotate a 200 mb plant genome for which I have a very >good assembly. > >I tried to denovo assemble RNA-seq data using trinity and ran maker >using my genome assembly and the trinity results. I did not get as >many transcripts as expected, around 10,000 transcripts. > >So, I decided to try a different approach. I did a genome assisted >assembly of the RNA-seq data using tophat/cufflinks. This pipeline >generated 21,000 genes, 29,000 transcripts. I then ran maker using my >genome assembly and the cufflinks result. I get much less number of >transcripts as a result. > >If cufflinks found 29000 transcripts by mapping to the genome, I'm >confused as to why maker is not finding the same. > >Any suggestions would be appreciated. > >Thanks >Dhivya > > >_______________________________________________ >maker-devel mailing list >maker-devel at box290.bluehost.com >http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org > >_______________________________________________ >maker-devel mailing list >maker-devel at box290.bluehost.com >http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org From ranjani at uga.edu Thu Jan 30 17:59:56 2014 From: ranjani at uga.edu (Sivaranjani Namasivayam) Date: Fri, 31 Jan 2014 00:59:56 +0000 Subject: [maker-devel] maker annotation with cufflinks output In-Reply-To: References: <516896DE-1ACB-460B-9842-90E12CB72343@gmail.com> , Message-ID: Hi All, This is a problem I have been having for quite some time; maker predicts much lower number of genes or proteins than in my evidence RNA-seq transcripts. My genome is not repetitive and is atleast 90% complete. I tried setting est2genome to 1, but that still doesn't seem to increase the predicted gene set too much. If I input ~13000 genes(21000 transcripts) as evidence I get predictions of ~5000 genes(6000 transcripts). I ran MAKER again with the transcripts that didn't have a gene model predicted in the first run, and this time MAKER predicted gene models for ~20-30% of those transcripts. Is there anything that can be done to increase the predicted gene count? Thanks, Ranjani ________________________________________ From: maker-devel on behalf of Carson Holt Sent: Thursday, January 30, 2014 4:14 PM To: Daniel Ence; dhivya arasappan; maker-devel at yandell-lab.org Subject: Re: [maker-devel] maker annotation with cufflinks output What you get back from cufflinks should not necessarily be considered a transcript count, and you should always expect the count given by cufflinks to be high relative to assembly methods like trinity (especially in plants). This is because repetitive elements, spurious alignments, and pseudogenes will all inflate the count because it is an alignment based method which can be more sensitive but will also generate a lot of false positives. Fortunately the false positives will mostly be singe exon results and will be filtered out by maker. Also your mRNA-seq data from cufflinks will contribute to hints that can generate genes in the absence of an ab-intio gene prediction, but if the gene finder doesn?t think the hints make sense it will ignore them. So a lot of cufflinks results that don?t make sense with respect to ORF etc., will fall into the category of being ignored. In addition, you should try running your pipeline through CEGMA (http://korflab.ucdavis.edu/datasets/cegma/) to identify the expected completeness of the genome. For example if a genome of 70% completeness then you only expect to recover 70% of the genes. I believe CEGMA can also be run online from the iPlant discovery environment and iPlant atmosphere images. Also make sure you are including proteins with your MAKER run, as not all genes will be expressed, so mRNAseq will only capture a portion of the genes and that portion can be as low as 50%. Thanks, Carson On 1/30/14, 1:51 PM, "Daniel Ence" wrote: >Hi Dhivya, > >I think there a few numbers that could be helpful to understand what's >happening here. > >How many transcripts did Trinity assembly the RNA-seq data into? Also, >you had 29,000 transcripts from cufflinks, but fewer from MAKER when you >gave it the cufflinks data. How many transcripts did MAKER identify with >the cufflinks data? Did you still get more than the 10,000 transcripts >that you found with just the Trinity data? > >A key part of MAKER's approach to genome annotation that might be >affecting it's performance is that it only annotates a gene where there >is both evidence (like your RNA-seq data) and an ab-initio prediction. If >a prediction is unsupported by the evidence, then MAKER won't annotate a >gene and if evidence aligns where there's no prediction, MAKER won't >annotate a gene either. What ab-initio predictors are you using and have >they been trained specific genome? > >You can force MAKER to automatically promote evidence alignments to a >gene model by setting the est2genome option to 1, but that will usually >give you many false positives. > >Try rerunning it with either the Trinity data or the Cufflinks data and >with est2genome set to 1, and let us know how that affects the MAKER >results. > >Thanks, >Daniel > >Daniel Ence >Graduate Student >Eccles Institute of Human Genetics >University of Utah >15 North 2030 East, Room 2100 >Salt Lake City, UT 84112-5330 >________________________________________ >From: maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of >dhivya arasappan [darasappan at gmail.com] >Sent: Thursday, January 30, 2014 11:18 AM >To: maker-devel at yandell-lab.org >Subject: [maker-devel] maker annotation with cufflinks output > >Hello, > >I am trying to annotate a 200 mb plant genome for which I have a very >good assembly. > >I tried to denovo assemble RNA-seq data using trinity and ran maker >using my genome assembly and the trinity results. I did not get as >many transcripts as expected, around 10,000 transcripts. > >So, I decided to try a different approach. I did a genome assisted >assembly of the RNA-seq data using tophat/cufflinks. This pipeline >generated 21,000 genes, 29,000 transcripts. I then ran maker using my >genome assembly and the cufflinks result. I get much less number of >transcripts as a result. > >If cufflinks found 29000 transcripts by mapping to the genome, I'm >confused as to why maker is not finding the same. > >Any suggestions would be appreciated. > >Thanks >Dhivya > > >_______________________________________________ >maker-devel mailing list >maker-devel at box290.bluehost.com >http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org > >_______________________________________________ >maker-devel mailing list >maker-devel at box290.bluehost.com >http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org _______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org From carsonhh at gmail.com Fri Jan 31 00:20:40 2014 From: carsonhh at gmail.com (Carson Holt) Date: Fri, 31 Jan 2014 00:20:40 -0700 Subject: [maker-devel] maker annotation with cufflinks output In-Reply-To: References: <516896DE-1ACB-460B-9842-90E12CB72343@gmail.com> Message-ID: So just a few suggestions. If you are getting fewer genes than you expect, that is usually an indication that the evidence provided is insufficient, the gene predictors need to be retrained, the repeat masking is insufficient, or the assembly has problems. Here is more explanation on each point: 1. In addition to any mRNA/EST data, you should provided full proteomes from a minimum of two species as closely related as possible, and perhaps a comprehensive database such as UniProt/Swissprot. Note that based on experience the comprehensive database cannot substitute for a related species proteome, they can complement it, but not substitute for it. So you need to supply full proteomes from something. mRNA/EST data is not sufficient by itself, so make sure you have enough protein evidence. 2. All models are ultimately generated by the predictors (maker doesn?t generate these), so care should be taken to train the predictors as best as possible. Also train at least two predictors (SNAP and Augustus are recommended). If they are both well trained, then they will be in general concordance with one another. If they are not well trained, then each program will produce very different models. So visually inspecting their concordance can give you an idea of if they need to be retrained. 3. More often than not, poor predictor performance is actually the result of repeat related complications. Many genomes that at first may seem repeat poor may actually contain novel repeats that can affect the performance of the gene predictors. If you are getting fewer genes than you expect or ab initio models are not in concordance from two independent predictors, run something like RepeatScout to generate species specific libraries. This may seem minor, but I have seen predictions go from apparently random to textbook perfect just by producing a species specific library of novel repeats. 4. You can?t have gene models if you don?t have open reading frames to translate through. Also gene predictors need sequence upstream and downstream of genes to work correctly, so if contigs are too short they won?t be useful for prediction even if the sum of the contigs is large enough to encompass the whole genome. In general any contig smaller than 10kb is not annotatable, so you should aim for as high an N50 value as possible. Annotating a new genome is sort of like a moving target. No two organisms are alike, so you usually have to to identify what deficiencies exist based on preliminary runs and then correct for them in subsequent runs. Thanks, Carson On 1/30/14, 5:59 PM, "Sivaranjani Namasivayam" wrote: >Hi All, > >This is a problem I have been having for quite some time; maker predicts >much lower number of genes or proteins than in my evidence RNA-seq >transcripts. My genome is not repetitive and is atleast 90% complete. > >I tried setting est2genome to 1, but that still doesn't seem to increase >the predicted gene set too much. If I input ~13000 genes(21000 >transcripts) as evidence I get predictions of ~5000 genes(6000 >transcripts). >I ran MAKER again with the transcripts that didn't have a gene model >predicted in the first run, and this time MAKER predicted gene models for >~20-30% of those transcripts. > >Is there anything that can be done to increase the predicted gene count? > >Thanks, >Ranjani >________________________________________ >From: maker-devel on behalf of >Carson Holt >Sent: Thursday, January 30, 2014 4:14 PM >To: Daniel Ence; dhivya arasappan; maker-devel at yandell-lab.org >Subject: Re: [maker-devel] maker annotation with cufflinks output > >What you get back from cufflinks should not necessarily be considered a >transcript count, and you should always expect the count given by >cufflinks to be high relative to assembly methods like trinity (especially >in plants). This is because repetitive elements, spurious alignments, and >pseudogenes will all inflate the count because it is an alignment based >method which can be more sensitive but will also generate a lot of false >positives. Fortunately the false positives will mostly be singe exon >results and will be filtered out by maker. Also your mRNA-seq data from >cufflinks will contribute to hints that can generate genes in the absence >of an ab-intio gene prediction, but if the gene finder doesn?t think the >hints make sense it will ignore them. So a lot of cufflinks results that >don?t make sense with respect to ORF etc., will fall into the category of >being ignored. > >In addition, you should try running your pipeline through CEGMA >(http://korflab.ucdavis.edu/datasets/cegma/) to identify the expected >completeness of the genome. For example if a genome of 70% completeness >then you only expect to recover 70% of the genes. I believe CEGMA can also >be run online from the iPlant discovery environment and iPlant atmosphere >images. Also make sure you are including proteins with your MAKER run, >as not all genes will be expressed, so mRNAseq will only capture a portion >of the genes and that portion can be as low as 50%. > >Thanks, >Carson > > >On 1/30/14, 1:51 PM, "Daniel Ence" wrote: > >>Hi Dhivya, >> >>I think there a few numbers that could be helpful to understand what's >>happening here. >> >>How many transcripts did Trinity assembly the RNA-seq data into? Also, >>you had 29,000 transcripts from cufflinks, but fewer from MAKER when you >>gave it the cufflinks data. How many transcripts did MAKER identify with >>the cufflinks data? Did you still get more than the 10,000 transcripts >>that you found with just the Trinity data? >> >>A key part of MAKER's approach to genome annotation that might be >>affecting it's performance is that it only annotates a gene where there >>is both evidence (like your RNA-seq data) and an ab-initio prediction. If >>a prediction is unsupported by the evidence, then MAKER won't annotate a >>gene and if evidence aligns where there's no prediction, MAKER won't >>annotate a gene either. What ab-initio predictors are you using and have >>they been trained specific genome? >> >>You can force MAKER to automatically promote evidence alignments to a >>gene model by setting the est2genome option to 1, but that will usually >>give you many false positives. >> >>Try rerunning it with either the Trinity data or the Cufflinks data and >>with est2genome set to 1, and let us know how that affects the MAKER >>results. >> >>Thanks, >>Daniel >> >>Daniel Ence >>Graduate Student >>Eccles Institute of Human Genetics >>University of Utah >>15 North 2030 East, Room 2100 >>Salt Lake City, UT 84112-5330 >>________________________________________ >>From: maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of >>dhivya arasappan [darasappan at gmail.com] >>Sent: Thursday, January 30, 2014 11:18 AM >>To: maker-devel at yandell-lab.org >>Subject: [maker-devel] maker annotation with cufflinks output >> >>Hello, >> >>I am trying to annotate a 200 mb plant genome for which I have a very >>good assembly. >> >>I tried to denovo assemble RNA-seq data using trinity and ran maker >>using my genome assembly and the trinity results. I did not get as >>many transcripts as expected, around 10,000 transcripts. >> >>So, I decided to try a different approach. I did a genome assisted >>assembly of the RNA-seq data using tophat/cufflinks. This pipeline >>generated 21,000 genes, 29,000 transcripts. I then ran maker using my >>genome assembly and the cufflinks result. I get much less number of >>transcripts as a result. >> >>If cufflinks found 29000 transcripts by mapping to the genome, I'm >>confused as to why maker is not finding the same. >> >>Any suggestions would be appreciated. >> >>Thanks >>Dhivya >> >> >>_______________________________________________ >>maker-devel mailing list >>maker-devel at box290.bluehost.com >>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org >> >>_______________________________________________ >>maker-devel mailing list >>maker-devel at box290.bluehost.com >>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org > > > >_______________________________________________ >maker-devel mailing list >maker-devel at box290.bluehost.com >http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org From darasappan at gmail.com Thu Jan 30 14:22:14 2014 From: darasappan at gmail.com (dhivya arasappan) Date: Thu, 30 Jan 2014 15:22:14 -0600 Subject: [maker-devel] maker annotation with cufflinks output In-Reply-To: References: <516896DE-1ACB-460B-9842-90E12CB72343@gmail.com> Message-ID: <3D1D5626-3130-4C4A-B808-FE2366A42048@gmail.com> Thank you for this information. Our server is currently down, so I'm unable to get you all the statistics you've asked for. Once the server is back up, I'll email again with more numbers But I can tell you that I did run cegma first and got around 92% completeness (full genes) and 98% completeness (partial genes). This is why I'm even more puzzled by maker results. Thanks again Dhivya On Jan 30, 2014, at 3:14 PM, Carson Holt wrote: > What you get back from cufflinks should not necessarily be > considered a > transcript count, and you should always expect the count given by > cufflinks to be high relative to assembly methods like trinity > (especially > in plants). This is because repetitive elements, spurious > alignments, and > pseudogenes will all inflate the count because it is an alignment > based > method which can be more sensitive but will also generate a lot of > false > positives. Fortunately the false positives will mostly be singe exon > results and will be filtered out by maker. Also your mRNA-seq data > from > cufflinks will contribute to hints that can generate genes in the > absence > of an ab-intio gene prediction, but if the gene finder doesn?t think > the > hints make sense it will ignore them. So a lot of cufflinks results > that > don?t make sense with respect to ORF etc., will fall into the > category of > being ignored. > > In addition, you should try running your pipeline through CEGMA > (http://korflab.ucdavis.edu/datasets/cegma/) to identify the expected > completeness of the genome. For example if a genome of 70% > completeness > then you only expect to recover 70% of the genes. I believe CEGMA > can also > be run online from the iPlant discovery environment and iPlant > atmosphere > images. Also make sure you are including proteins with your MAKER > run, > as not all genes will be expressed, so mRNAseq will only capture a > portion > of the genes and that portion can be as low as 50%. > > Thanks, > Carson > > > On 1/30/14, 1:51 PM, "Daniel Ence" wrote: > >> Hi Dhivya, >> >> I think there a few numbers that could be helpful to understand >> what's >> happening here. >> >> How many transcripts did Trinity assembly the RNA-seq data into? >> Also, >> you had 29,000 transcripts from cufflinks, but fewer from MAKER >> when you >> gave it the cufflinks data. How many transcripts did MAKER identify >> with >> the cufflinks data? Did you still get more than the 10,000 >> transcripts >> that you found with just the Trinity data? >> >> A key part of MAKER's approach to genome annotation that might be >> affecting it's performance is that it only annotates a gene where >> there >> is both evidence (like your RNA-seq data) and an ab-initio >> prediction. If >> a prediction is unsupported by the evidence, then MAKER won't >> annotate a >> gene and if evidence aligns where there's no prediction, MAKER won't >> annotate a gene either. What ab-initio predictors are you using and >> have >> they been trained specific genome? >> >> You can force MAKER to automatically promote evidence alignments to a >> gene model by setting the est2genome option to 1, but that will >> usually >> give you many false positives. >> >> Try rerunning it with either the Trinity data or the Cufflinks data >> and >> with est2genome set to 1, and let us know how that affects the MAKER >> results. >> >> Thanks, >> Daniel >> >> Daniel Ence >> Graduate Student >> Eccles Institute of Human Genetics >> University of Utah >> 15 North 2030 East, Room 2100 >> Salt Lake City, UT 84112-5330 >> ________________________________________ >> From: maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of >> dhivya arasappan [darasappan at gmail.com] >> Sent: Thursday, January 30, 2014 11:18 AM >> To: maker-devel at yandell-lab.org >> Subject: [maker-devel] maker annotation with cufflinks output >> >> Hello, >> >> I am trying to annotate a 200 mb plant genome for which I have a very >> good assembly. >> >> I tried to denovo assemble RNA-seq data using trinity and ran maker >> using my genome assembly and the trinity results. I did not get as >> many transcripts as expected, around 10,000 transcripts. >> >> So, I decided to try a different approach. I did a genome assisted >> assembly of the RNA-seq data using tophat/cufflinks. This pipeline >> generated 21,000 genes, 29,000 transcripts. I then ran maker using >> my >> genome assembly and the cufflinks result. I get much less number of >> transcripts as a result. >> >> If cufflinks found 29000 transcripts by mapping to the genome, I'm >> confused as to why maker is not finding the same. >> >> Any suggestions would be appreciated. >> >> Thanks >> Dhivya >> >> >> _______________________________________________ >> maker-devel mailing list >> maker-devel at box290.bluehost.com >> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org >> >> _______________________________________________ >> maker-devel mailing list >> maker-devel at box290.bluehost.com >> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org > > From sujaikumar at gmail.com Fri Jan 31 01:39:26 2014 From: sujaikumar at gmail.com (Sujai) Date: Fri, 31 Jan 2014 08:39:26 +0000 Subject: [maker-devel] maker annotation with cufflinks output In-Reply-To: References: <516896DE-1ACB-460B-9842-90E12CB72343@gmail.com> Message-ID: Many thanks, Carson - for this fabulous post describing general principles. You've hinted at some of these tips in other posts, but it's great to have them in one place. Thanks especially for the kinds of things that make a big difference (point 3 below). More such tips always welcome! Best wishes, and thanks for an amazing piece of kit. - Sujai On 31 January 2014 07:20, Carson Holt wrote: > So just a few suggestions. If you are getting fewer genes than you expect, > that is usually an indication that the evidence provided is insufficient, > the gene predictors need to be retrained, the repeat masking is > insufficient, or the assembly has problems. > > Here is more explanation on each point: > > 1. In addition to any mRNA/EST data, you should provided full proteomes > from a minimum of two species as closely related as possible, and perhaps > a comprehensive database such as UniProt/Swissprot. Note that based on > experience the comprehensive database cannot substitute for a related > species proteome, they can complement it, but not substitute for it. So > you need to supply full proteomes from something. mRNA/EST data is not > sufficient by itself, so make sure you have enough protein evidence. > > 2. All models are ultimately generated by the predictors (maker doesn't > generate these), so care should be taken to train the predictors as best > as possible. Also train at least two predictors (SNAP and Augustus are > recommended). If they are both well trained, then they will be in general > concordance with one another. If they are not well trained, then each > program will produce very different models. So visually inspecting their > concordance can give you an idea of if they need to be retrained. > > 3. More often than not, poor predictor performance is actually the result > of repeat related complications. Many genomes that at first may seem > repeat poor may actually contain novel repeats that can affect the > performance of the gene predictors. If you are getting fewer genes than > you expect or ab initio models are not in concordance from two independent > predictors, run something like RepeatScout to generate species specific > libraries. This may seem minor, but I have seen predictions go from > apparently random to textbook perfect just by producing a species specific > library of novel repeats. > > 4. You can't have gene models if you don't have open reading frames to > translate through. Also gene predictors need sequence upstream and > downstream of genes to work correctly, so if contigs are too short they > won't be useful for prediction even if the sum of the contigs is large > enough to encompass the whole genome. In general any contig smaller than > 10kb is not annotatable, so you should aim for as high an N50 value as > possible. > > > Annotating a new genome is sort of like a moving target. No two organisms > are alike, so you usually have to to identify what deficiencies exist > based on preliminary runs and then correct for them in subsequent runs. > > Thanks, > Carson > > > > On 1/30/14, 5:59 PM, "Sivaranjani Namasivayam" wrote: > >>Hi All, >> >>This is a problem I have been having for quite some time; maker predicts >>much lower number of genes or proteins than in my evidence RNA-seq >>transcripts. My genome is not repetitive and is atleast 90% complete. >> >>I tried setting est2genome to 1, but that still doesn't seem to increase >>the predicted gene set too much. If I input ~13000 genes(21000 >>transcripts) as evidence I get predictions of ~5000 genes(6000 >>transcripts). >>I ran MAKER again with the transcripts that didn't have a gene model >>predicted in the first run, and this time MAKER predicted gene models for >>~20-30% of those transcripts. >> >>Is there anything that can be done to increase the predicted gene count? >> >>Thanks, >>Ranjani >>________________________________________ >>From: maker-devel on behalf of >>Carson Holt >>Sent: Thursday, January 30, 2014 4:14 PM >>To: Daniel Ence; dhivya arasappan; maker-devel at yandell-lab.org >>Subject: Re: [maker-devel] maker annotation with cufflinks output >> >>What you get back from cufflinks should not necessarily be considered a >>transcript count, and you should always expect the count given by >>cufflinks to be high relative to assembly methods like trinity (especially >>in plants). This is because repetitive elements, spurious alignments, and >>pseudogenes will all inflate the count because it is an alignment based >>method which can be more sensitive but will also generate a lot of false >>positives. Fortunately the false positives will mostly be singe exon >>results and will be filtered out by maker. Also your mRNA-seq data from >>cufflinks will contribute to hints that can generate genes in the absence >>of an ab-intio gene prediction, but if the gene finder doesn't think the >>hints make sense it will ignore them. So a lot of cufflinks results that >>don't make sense with respect to ORF etc., will fall into the category of >>being ignored. >> >>In addition, you should try running your pipeline through CEGMA >>(http://korflab.ucdavis.edu/datasets/cegma/) to identify the expected >>completeness of the genome. For example if a genome of 70% completeness >>then you only expect to recover 70% of the genes. I believe CEGMA can also >>be run online from the iPlant discovery environment and iPlant atmosphere >>images. Also make sure you are including proteins with your MAKER run, >>as not all genes will be expressed, so mRNAseq will only capture a portion >>of the genes and that portion can be as low as 50%. >> >>Thanks, >>Carson >> >> >>On 1/30/14, 1:51 PM, "Daniel Ence" wrote: >> >>>Hi Dhivya, >>> >>>I think there a few numbers that could be helpful to understand what's >>>happening here. >>> >>>How many transcripts did Trinity assembly the RNA-seq data into? Also, >>>you had 29,000 transcripts from cufflinks, but fewer from MAKER when you >>>gave it the cufflinks data. How many transcripts did MAKER identify with >>>the cufflinks data? Did you still get more than the 10,000 transcripts >>>that you found with just the Trinity data? >>> >>>A key part of MAKER's approach to genome annotation that might be >>>affecting it's performance is that it only annotates a gene where there >>>is both evidence (like your RNA-seq data) and an ab-initio prediction. If >>>a prediction is unsupported by the evidence, then MAKER won't annotate a >>>gene and if evidence aligns where there's no prediction, MAKER won't >>>annotate a gene either. What ab-initio predictors are you using and have >>>they been trained specific genome? >>> >>>You can force MAKER to automatically promote evidence alignments to a >>>gene model by setting the est2genome option to 1, but that will usually >>>give you many false positives. >>> >>>Try rerunning it with either the Trinity data or the Cufflinks data and >>>with est2genome set to 1, and let us know how that affects the MAKER >>>results. >>> >>>Thanks, >>>Daniel >>> >>>Daniel Ence >>>Graduate Student >>>Eccles Institute of Human Genetics >>>University of Utah >>>15 North 2030 East, Room 2100 >>>Salt Lake City, UT 84112-5330 >>>________________________________________ >>>From: maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of >>>dhivya arasappan [darasappan at gmail.com] >>>Sent: Thursday, January 30, 2014 11:18 AM >>>To: maker-devel at yandell-lab.org >>>Subject: [maker-devel] maker annotation with cufflinks output >>> >>>Hello, >>> >>>I am trying to annotate a 200 mb plant genome for which I have a very >>>good assembly. >>> >>>I tried to denovo assemble RNA-seq data using trinity and ran maker >>>using my genome assembly and the trinity results. I did not get as >>>many transcripts as expected, around 10,000 transcripts. >>> >>>So, I decided to try a different approach. I did a genome assisted >>>assembly of the RNA-seq data using tophat/cufflinks. This pipeline >>>generated 21,000 genes, 29,000 transcripts. I then ran maker using my >>>genome assembly and the cufflinks result. I get much less number of >>>transcripts as a result. >>> >>>If cufflinks found 29000 transcripts by mapping to the genome, I'm >>>confused as to why maker is not finding the same. >>> >>>Any suggestions would be appreciated. >>> >>>Thanks >>>Dhivya >>> >>> >>>_______________________________________________ >>>maker-devel mailing list >>>maker-devel at box290.bluehost.com >>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org >>> >>>_______________________________________________ >>>maker-devel mailing list >>>maker-devel at box290.bluehost.com >>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org >> >> >> >>_______________________________________________ >>maker-devel mailing list >>maker-devel at box290.bluehost.com >>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org > > > > _______________________________________________ > maker-devel mailing list > maker-devel at box290.bluehost.com > http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org From sbrubaker at solazyme.com Wed Jan 8 11:10:30 2014 From: sbrubaker at solazyme.com (Shane Brubaker) Date: Wed, 8 Jan 2014 18:10:30 +0000 Subject: [maker-devel] Plastid annotation Message-ID: <61D01ACB70C1E141A150BA9F586D5BFA50EF7ADE@EXCHANGE-MB01.internal.solazyme.com> Hi, we are embarking on a project to annotate several plastids. We want to do all the work in-house though (i.e. we don't want to use a web service) and we would like to use MAKER if possible. As you know the plastid is essentially bacterial, so I get the impression that it would not be appropriate to use Augustus or SNAP on it, is that correct? Is it possible instead to use Glimmer within MAKER? I was wondering if anyone has suggestions on 1) how to use MAKER with organellar genomes and 2) other general organellar annotation piplelines that people have found useful (and useable) that are downloadable to a local installation. Thanks, Shane Brubaker -------------- next part -------------- An HTML attachment was scrubbed... URL: From michael.s.campbell1 at gmail.com Wed Jan 8 13:51:03 2014 From: michael.s.campbell1 at gmail.com (Michael Campbell) Date: Wed, 8 Jan 2014 13:51:03 -0700 Subject: [maker-devel] FW: extract repeats from maker output In-Reply-To: <7A60AB257EFF2B48B1F4C814817EA05365EDC871@mxb2.hg.genetics.utah.edu> References: <7A60AB257EFF2B48B1F4C814817EA05365EDC871@mxb2.hg.genetics.utah.edu> Message-ID: Hi Stefan, MAKER does write the repeatmasker output to the final gff3 file. However, to save space and prevent redundancy in the case of nested or overlapping repeats the repeat regions are collapsed and named after the longest repeat contributing to the repeat region. This means that the portion of the genome being masked is easy to calculate, but the length of the masked regions reported in the MAKER output will non always represent the length of individual repetitive elements. To get the true length distribution you could run repeat masker on the genome outside of MAKER or look for the repeatmasker output in the void directories in the datastore for each scaffold. Also make sure that you are using the most recent version of MAKER. There was one recent bug fix that affected the repeatmaksker output that was written to the gff3 file that resulted, in some cases, in an underestimation of the portion of the genome that was masked prior to annotation. I've copied this to the MAKER dev list just in case anyone else has additional insights. Mike > > Dear Mark Yandell, > > I wanted to ask if it's possible to extract a file with all repeats found > from the maker output? > > I would like to see how much of the genome is repeats and check their > lengths distribution. > > All the best, > Stefan Prost > > > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From dence at genetics.utah.edu Wed Jan 8 16:44:10 2014 From: dence at genetics.utah.edu (Daniel Ence) Date: Wed, 8 Jan 2014 23:44:10 +0000 Subject: [maker-devel] Plastid annotation In-Reply-To: <61D01ACB70C1E141A150BA9F586D5BFA50EF7ADE@EXCHANGE-MB01.internal.solazyme.com> References: <61D01ACB70C1E141A150BA9F586D5BFA50EF7ADE@EXCHANGE-MB01.internal.solazyme.com> Message-ID: Hi Shane, I'm not familiar with anyone using MAKER to annotate organellar genomes. My guess is that there might be a more specialized pipeline for this purpose. Glimmer isn't integrated into MAKER, but if you can get a gff3 file from it, you can pass those predictions to MAKER. The only difference between passing predictions and running it within MAKER is that MAKER will generate and pass "hints" based on the blast alignments to its internal predictors. MAKER can't do that with predictions generated externally. Thanks, Daniel Daniel Ence Graduate Student Eccles Institute of Human Genetics University of Utah 15 North 2030 East, Room 2100 Salt Lake City, UT 84112-5330 ________________________________ From: maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of Shane Brubaker [sbrubaker at solazyme.com] Sent: Wednesday, January 08, 2014 11:10 AM To: maker-devel at yandell-lab.org Cc: Aren Ewing Subject: [maker-devel] Plastid annotation Hi, we are embarking on a project to annotate several plastids. We want to do all the work in-house though (i.e. we don?t want to use a web service) and we would like to use MAKER if possible. As you know the plastid is essentially bacterial, so I get the impression that it would not be appropriate to use Augustus or SNAP on it, is that correct? Is it possible instead to use Glimmer within MAKER? I was wondering if anyone has suggestions on 1) how to use MAKER with organellar genomes and 2) other general organellar annotation piplelines that people have found useful (and useable) that are downloadable to a local installation. Thanks, Shane Brubaker -------------- next part -------------- An HTML attachment was scrubbed... URL: From sbrubaker at solazyme.com Wed Jan 8 16:47:30 2014 From: sbrubaker at solazyme.com (Shane Brubaker) Date: Wed, 8 Jan 2014 23:47:30 +0000 Subject: [maker-devel] Plastid annotation In-Reply-To: References: <61D01ACB70C1E141A150BA9F586D5BFA50EF7ADE@EXCHANGE-MB01.internal.solazyme.com> Message-ID: <61D01ACB70C1E141A150BA9F586D5BFA50EF7E00@EXCHANGE-MB01.internal.solazyme.com> Thanks very much for the information! From: Daniel Ence [mailto:dence at genetics.utah.edu] Sent: Wednesday, January 08, 2014 3:44 PM To: Shane Brubaker; maker-devel at yandell-lab.org Cc: Aren Ewing Subject: RE: Plastid annotation Hi Shane, I'm not familiar with anyone using MAKER to annotate organellar genomes. My guess is that there might be a more specialized pipeline for this purpose. Glimmer isn't integrated into MAKER, but if you can get a gff3 file from it, you can pass those predictions to MAKER. The only difference between passing predictions and running it within MAKER is that MAKER will generate and pass "hints" based on the blast alignments to its internal predictors. MAKER can't do that with predictions generated externally. Thanks, Daniel Daniel Ence Graduate Student Eccles Institute of Human Genetics University of Utah 15 North 2030 East, Room 2100 Salt Lake City, UT 84112-5330 ________________________________ From: maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of Shane Brubaker [sbrubaker at solazyme.com] Sent: Wednesday, January 08, 2014 11:10 AM To: maker-devel at yandell-lab.org Cc: Aren Ewing Subject: [maker-devel] Plastid annotation Hi, we are embarking on a project to annotate several plastids. We want to do all the work in-house though (i.e. we don't want to use a web service) and we would like to use MAKER if possible. As you know the plastid is essentially bacterial, so I get the impression that it would not be appropriate to use Augustus or SNAP on it, is that correct? Is it possible instead to use Glimmer within MAKER? I was wondering if anyone has suggestions on 1) how to use MAKER with organellar genomes and 2) other general organellar annotation piplelines that people have found useful (and useable) that are downloadable to a local installation. Thanks, Shane Brubaker -------------- next part -------------- An HTML attachment was scrubbed... URL: From amelia.ireland at gmod.org Thu Jan 9 14:15:03 2014 From: amelia.ireland at gmod.org (Amelia Ireland) Date: Thu, 9 Jan 2014 13:15:03 -0800 Subject: [maker-devel] GMOD in San Diego: PAG XXII and GMOD meeting Message-ID: Greetings, GMODders! If you're going to be in San Diego for PAG next week, we've put together a guide to the GMOD sessions at PAG, as well as a selection of content from GMOD users. You can find it on the GMOD website at http://gmod.org/wiki/PAG Please come along to the GMOD sessions and poster and introduce yourself and your project -- we would love to hear what you're doing with GMOD software! If you want to come to the GMOD Community Meeting on Jan 16 and 17, there is still time to register, but please do so ASAP. The agenda and registration link are on the wiki: http://gmod.org/wiki/Jan_2014_GMOD_Meeting Thanks! -- Amelia Ireland GMOD Community Support Generic Model Organism Database project http://gmod.org || @gmodproject -------------- next part -------------- An HTML attachment was scrubbed... URL: From mikael.durling at slu.se Fri Jan 10 02:48:49 2014 From: mikael.durling at slu.se (=?iso-8859-1?Q?Mikael_Brandstr=F6m_Durling?=) Date: Fri, 10 Jan 2014 09:48:49 +0000 Subject: [maker-devel] ncRNA support in maker Message-ID: Hi Carson and other maker developers, I was reading the source code of the latest maker release and noted several references to ncRNAs, snoscan and trnascan. Can these be incorporated into the normal annotation workflow? If so, are there any instructions available for that? best regards, Mikael Durling -------------- next part -------------- A non-text attachment was scrubbed... Name: signature.asc Type: application/pgp-signature Size: 496 bytes Desc: Message signed with OpenPGP using GPGMail URL: From carsonhh at gmail.com Fri Jan 10 14:03:25 2014 From: carsonhh at gmail.com (Carson Holt) Date: Fri, 10 Jan 2014 14:03:25 -0700 Subject: [maker-devel] ncRNA support in maker Message-ID: Hi Mikael, The options are part of the new MAKER-P integration (http://www.plantphysiol.org/content/early/2013/12/06/pp.113.230144.abstrac t). Additional documentation/tutorials will be forthcoming - probably in a nice wiki page as part of the upcoming GMOD Malaysia courses in February or alternatively with the annual GMOD summer school. The tRNA option is easy enough to turn on (just set trna=1 in the maker_opts.ctl file). Thanks, Carson On 1/10/14, 2:48 AM, "Mikael Brandstr?m Durling" wrote: >Hi Carson and other maker developers, > >I was reading the source code of the latest maker release and noted >several references to ncRNAs, snoscan and trnascan. Can these be >incorporated into the normal annotation workflow? If so, are there any >instructions available for that? > >best regards, >Mikael Durling >_______________________________________________ >maker-devel mailing list >maker-devel at box290.bluehost.com >http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org From saneasheikh at gmail.com Mon Jan 13 02:17:25 2014 From: saneasheikh at gmail.com (Sanea Sheikh) Date: Mon, 13 Jan 2014 10:17:25 +0100 Subject: [maker-devel] Problem with re-annotation Message-ID: Hello I am using Maker to annotate a genome for which I only have EST data and some protein data. I ran Maker once using this EST and protein data (est2genome=1, protein2genome=1). I had the Maker output. I combined all the GFF files for all the contigs. I used the combined GFF file to train SNAP which gave me a .hmm file. Now I modified the Maker opts control file. I provided the hmm file in snap_hmm. I set est2genome=0 and protein2genome=0. I ran Maker again assuming that now I have trained the gene predictor and I would have better annotations. But now the output file that I get does not have Maker annotation. I have attached the control files and the output file for the re-run so you can have a look and let me know what I am doing wrong in order to re-annotate the genome using the output from the previous run. Sanea -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: concatenated_gff_run1.gff Type: application/octet-stream Size: 8158526 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: Run1maker_opts.ctl Type: application/octet-stream Size: 4684 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: Run2maker_opts.ctl Type: application/octet-stream Size: 4749 bytes Desc: not available URL: From charlos9 at gmail.com Mon Jan 13 13:00:12 2014 From: charlos9 at gmail.com (carlos vargas) Date: Mon, 13 Jan 2014 21:00:12 +0100 Subject: [maker-devel] Problem installing maker Message-ID: Hello, I have been trying to install maker but I've been facing several issues. After installing all of the prerequisites I ran perl Build.PL and ./Build install. No issues were detected. Afterwards I tried to test maker by simply executing maker -h and got the following error: Can't locate MAKER/ConfigData.pm in @INC (@INC contains: ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42. I found a similar thread which suggested reinstalling (which I did) but I still face the same issue. The full messages are below. Thank you for your help! Carlos ~/software/maker/src$ sudo perl Build.PL MAKER supports distributed parallelization via MPI. Would you like to configure MAKER for MPI (This requires that you have an MPI client installed)? [N ] N Would you like to install the web interface to MAKER (MWAS) on this machine This requires that you be logged in as root or use sudo for './Build install'? [N ] N Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'MAKER' version '2.3' The file 'Build' has been created for you to finish installing MAKER. ============================================================================== STATUS MAKER 2.3 ============================================================================== PERL Dependencies: VERIFIED External Programs: VERIFIED External C Libraries: VERIFIED MPI SUPPORT: DISABLED MWAS Web Interface: DISABLED MAKER PACKAGE: CONFIGURATION OK Important Commands: ./Build installdeps #installs missing PERL dependencies ./Build installexes #installs all missing external programs ./Build install #installs MAKER ./Build status #Shows this status menu Other Commands: ./Build repeatmasker #installs RepeatMasker (asks for RepBase) ./Build blast #installs BLAST (NCBI BLAST+) ./Build exonerate #installs Exonerate (v2 on UNIX / v1 on Mac OSX) ./Build snap #installs SNAP ./Build augustus #installs Augustus ./Build apollo #installs Apollo ./Build gbrowse #installs GBrowse (must be root) ./Build jbrowse #installs JBrowse (MAKER copy, not web accecible) ./Build webapollo #installs WebApollo (use maker2wap to create DBs) ./Build mpich2 #installs MPICH2 (but manual install recommended) ~/software/maker/src$ sudo ./Build install Building MAKER Installing MAKER... Building MAKER Installing ~/software/maker/src/../perl/lib/MAKER/ConfigData.pm ~/software/maker/src$ maker -h Can't locate MAKER/ConfigData.pm in @INC (@INC contains: ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42. -------------- next part -------------- An HTML attachment was scrubbed... URL: From carsonhh at gmail.com Mon Jan 13 13:06:13 2014 From: carsonhh at gmail.com (Carson Holt) Date: Mon, 13 Jan 2014 12:06:13 -0800 Subject: [maker-devel] Problem installing maker In-Reply-To: References: Message-ID: You are running maker from .../maker/src/bin/. That is just the source code. The scripts for execution will be in .../maker/bin/ after installation. You need to use those. Thanks, Carson > On Jan 13, 2014, at 12:00 PM, carlos vargas wrote: > > Hello, > > I have been trying to install maker but I've been facing several issues. After installing all of the prerequisites I ran perl Build.PL and ./Build install. No issues were detected. Afterwards I tried to test maker by simply executing maker -h and got the following error: > > Can't locate MAKER/ConfigData.pm in @INC (@INC contains: ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. > BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42. > > I found a similar thread which suggested reinstalling (which I did) but I still face the same issue. The full messages are below. > > > Thank you for your help! > > Carlos > > > ~/software/maker/src$ sudo perl Build.PL > > MAKER supports distributed parallelization via MPI. > Would you like to configure MAKER for MPI (This > requires that you have an MPI client installed)? [N ] > N > > Would you like to install the web interface to MAKER (MWAS) on this machine > This requires that you be logged in as root or use sudo for './Build install'? [N ] > N > Created MYMETA.yml and MYMETA.json > Creating new 'Build' script for 'MAKER' version '2.3' > > > The file 'Build' has been created for you to finish installing MAKER. > > > ============================================================================== > STATUS MAKER 2.3 > ============================================================================== > PERL Dependencies: VERIFIED > External Programs: VERIFIED > External C Libraries: VERIFIED > MPI SUPPORT: DISABLED > MWAS Web Interface: DISABLED > MAKER PACKAGE: CONFIGURATION OK > > > Important Commands: > ./Build installdeps #installs missing PERL dependencies > ./Build installexes #installs all missing external programs > ./Build install #installs MAKER > ./Build status #Shows this status menu > > Other Commands: > ./Build repeatmasker #installs RepeatMasker (asks for RepBase) > ./Build blast #installs BLAST (NCBI BLAST+) > ./Build exonerate #installs Exonerate (v2 on UNIX / v1 on Mac OSX) > ./Build snap #installs SNAP > ./Build augustus #installs Augustus > ./Build apollo #installs Apollo > ./Build gbrowse #installs GBrowse (must be root) > ./Build jbrowse #installs JBrowse (MAKER copy, not web accecible) > ./Build webapollo #installs WebApollo (use maker2wap to create DBs) > ./Build mpich2 #installs MPICH2 (but manual install recommended) > > ~/software/maker/src$ sudo ./Build install > Building MAKER > Installing MAKER... > Building MAKER > Installing ~/software/maker/src/../perl/lib/MAKER/ConfigData.pm > > ~/software/maker/src$ maker -h > Can't locate MAKER/ConfigData.pm in @INC (@INC contains: ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. > BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42. > > > _______________________________________________ > maker-devel mailing list > maker-devel at box290.bluehost.com > http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org From barry.utah at gmail.com Mon Jan 13 14:21:22 2014 From: barry.utah at gmail.com (Barry Moore) Date: Mon, 13 Jan 2014 14:21:22 -0700 Subject: [maker-devel] Problem installing maker In-Reply-To: References: Message-ID: Hi Carlos, Did you run ./Build install? If not do that first and then you want to run the copy of maker in ~/software/maker/bin/maker. B On Jan 13, 2014, at 1:00 PM, carlos vargas wrote: > Hello, > > I have been trying to install maker but I've been facing several issues. After installing all of the prerequisites I ran perl Build.PL and ./Build install. No issues were detected. Afterwards I tried to test maker by simply executing maker -h and got the following error: > > Can't locate MAKER/ConfigData.pm in @INC (@INC contains: ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. > BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42. > > I found a similar thread which suggested reinstalling (which I did) but I still face the same issue. The full messages are below. > > > Thank you for your help! > > Carlos > > > ~/software/maker/src$ sudo perl Build.PL > > MAKER supports distributed parallelization via MPI. > Would you like to configure MAKER for MPI (This > requires that you have an MPI client installed)? [N ] > N > > Would you like to install the web interface to MAKER (MWAS) on this machine > This requires that you be logged in as root or use sudo for './Build install'? [N ] > N > Created MYMETA.yml and MYMETA.json > Creating new 'Build' script for 'MAKER' version '2.3' > > > The file 'Build' has been created for you to finish installing MAKER. > > > ============================================================================== > STATUS MAKER 2.3 > ============================================================================== > PERL Dependencies: VERIFIED > External Programs: VERIFIED > External C Libraries: VERIFIED > MPI SUPPORT: DISABLED > MWAS Web Interface: DISABLED > MAKER PACKAGE: CONFIGURATION OK > > > Important Commands: > ./Build installdeps #installs missing PERL dependencies > ./Build installexes #installs all missing external programs > ./Build install #installs MAKER > ./Build status #Shows this status menu > > Other Commands: > ./Build repeatmasker #installs RepeatMasker (asks for RepBase) > ./Build blast #installs BLAST (NCBI BLAST+) > ./Build exonerate #installs Exonerate (v2 on UNIX / v1 on Mac OSX) > ./Build snap #installs SNAP > ./Build augustus #installs Augustus > ./Build apollo #installs Apollo > ./Build gbrowse #installs GBrowse (must be root) > ./Build jbrowse #installs JBrowse (MAKER copy, not web accecible) > ./Build webapollo #installs WebApollo (use maker2wap to create DBs) > ./Build mpich2 #installs MPICH2 (but manual install recommended) > > ~/software/maker/src$ sudo ./Build install > Building MAKER > Installing MAKER... > Building MAKER > Installing ~/software/maker/src/../perl/lib/MAKER/ConfigData.pm > > ~/software/maker/src$ maker -h > Can't locate MAKER/ConfigData.pm in @INC (@INC contains: ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. > BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42. > > > _______________________________________________ > maker-devel mailing list > maker-devel at box290.bluehost.com > http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org Barry Moore Research Scientist Dept. of Human Genetics University of Utah Salt Lake City, UT 84112 -------------------------------------------- (801) 585-3543 -------------- next part -------------- An HTML attachment was scrubbed... URL: From carsonhh at gmail.com Mon Jan 13 17:39:19 2014 From: carsonhh at gmail.com (Carson Holt) Date: Mon, 13 Jan 2014 17:39:19 -0700 Subject: [maker-devel] Problem with re-annotation In-Reply-To: References: Message-ID: Hi Sanea, There are no snap calls in your results. It?s as if SNAP never even ran. Did you capture STDERR from your second run? If so can you send it to me. I just want to see if it even shows SNAP as having run in the progress reports. Thanks, Carson From: Sanea Sheikh Date: Monday, January 13, 2014 at 2:17 AM To: Subject: [maker-devel] Problem with re-annotation Hello I am using Maker to annotate a genome for which I only have EST data and some protein data. I ran Maker once using this EST and protein data (est2genome=1, protein2genome=1). I had the Maker output. I combined all the GFF files for all the contigs. I used the combined GFF file to train SNAP which gave me a .hmm file. Now I modified the Maker opts control file. I provided the hmm file in snap_hmm. I set est2genome=0 and protein2genome=0. I ran Maker again assuming that now I have trained the gene predictor and I would have better annotations. But now the output file that I get does not have Maker annotation. I have attached the control files and the output file for the re-run so you can have a look and let me know what I am doing wrong in order to re-annotate the genome using the output from the previous run. Sanea _______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org -------------- next part -------------- An HTML attachment was scrubbed... URL: From carson.holt at genetics.utah.edu Tue Jan 14 11:14:00 2014 From: carson.holt at genetics.utah.edu (Carson Holt) Date: Tue, 14 Jan 2014 18:14:00 +0000 Subject: [maker-devel] Issues regarding maker In-Reply-To: <7A60AB257EFF2B48B1F4C814817EA05365EE0D6E@mxb2.hg.genetics.utah.edu> References: <1766640308.998.1389701368895.JavaMail.root@mail.icgeb.res.in> <7A60AB257EFF2B48B1F4C814817EA05365EE0D6E@mxb2.hg.genetics.utah.edu> Message-ID: Hi Nandita, Check that you do not have an error like an extra space or character when you add it to your PATH. Also you must either ?source? the modified ./bashrc or restart your terminal for changes to the PATH environmental variable to take effect. You can check the contents of your active PATH variable by doing 'echo $PATH' on the command line. Also check that you finished the installation procedure. If so the 'maker' script should be in the .../maker/bin/ directory. Make sure it is there, and make sure it is the .../maker/bin/ directory and not the .../maker/ or .../maker/src/ directory that you added to the PATH. Thanks, Carson On 1/14/14, 7:22 AM, "Mark Yandell" wrote: > > >Mark Yandell >Professor of Human Genetics >H.A. & Edna Benning Presidential Endowed Chair >Eccles Institute of Human Genetics >University of Utah >15 North 2030 East, Room 2100 >Salt Lake City, UT 84112-5330 >ph:801-587-7707 > >________________________________________ >From: Nandita Pasari [nandita at icgeb.res.in] >Sent: Tuesday, January 14, 2014 5:09 AM >To: Mark Yandell >Subject: Issues regarding maker > >Respected Sir, > >I have been trying to install maker and the configuration it is showing >on installation is ok. >when I type maker -h it shows > > >"No command 'maker' found, did you mean: > Command 'wmaker' from package 'wmaker-common' (universe) > Command 'makeg' from package 'xutils-dev' (main) > Command 'make' from package 'make' (main) > maker: command not found" > >Also I have set the path in nano ./bashrc profile still it is not running. >Can you please help me out. > > >Nandita Pasari >Pre Doctoral Fellow >Synthetic Biology and Biofuels Group >ICGEB >New Delhi From amelia.ireland at gmod.org Tue Jan 14 13:55:20 2014 From: amelia.ireland at gmod.org (Amelia Ireland) Date: Tue, 14 Jan 2014 12:55:20 -0800 Subject: [maker-devel] GMOD Malaysia 2014 Message-ID: GMOD is pleased to announce GMOD Malaysia, a three-day training course to be held in Kuala Lumpur, Malaysia, on February 26-28, 2014. http://gmod.org/wiki/GMOD_Malaysia_2014 GMOD Malaysia offers an introduction to, and training in, the bioinformatics software offered by the Generic Model Organism Database project. Over three days, participants will learn about GMOD's free, open-source tools for visualising, storing, and disseminating genetic and genomic data. These include: - Galaxy analysis pipeline - GBrowse and JBrowse genome browsers - InterMine data warehouse - MAKER and MAKER-P genome annotation pipelines - Tripal website generator and database interface - Chado database schema Instruction is by experienced instructors and developers with deep knowledge of the tools and their applications. By the end of the course, participants will have hands-on experience of setting up and using core components needed for a modern genomics project. Application deadline: 12 February 2014. For more information, and to apply, please visit the website: http://gmod.org/wiki/GMOD_Malaysia_2014 Please spread the word to anyone who may be interested! GMOD Malaysia 2014 is made possible by the extremely generous support of National Evolutionary Synthesis Center (NESCent, http://nescent.org) and the NESCent Ambassador program. NESCent promotes the synthesis of information, concepts and knowledge to address significant, emerging, or novel questions in evolutionary science and its applications; it supports research and education across disciplinary, institutional, geographic, and demographic boundaries. The NESCent Ambassador Program is NESCent?s primary international outreach program, and is supported by a three-year grant from the NSF. GMOD is very grateful to be a beneficiary of this generous program. Thanks! -- Amelia Ireland GMOD Community Support Generic Model Organism Database project http://gmod.org || @gmodproject -------------- next part -------------- An HTML attachment was scrubbed... URL: From prakhar_aaidu16 at hotmail.com Wed Jan 15 23:12:24 2014 From: prakhar_aaidu16 at hotmail.com (PRAKHAR gaur) Date: Thu, 16 Jan 2014 11:42:24 +0530 Subject: [maker-devel] Maker Virtual Machine Image Message-ID: Hello, I am having multiple dependency related and library version issues installing Maker 2.28 on Debian 7 So would like to ask if there is a easy way out?Is there a vm image with Maker available for download from somewhere? I know about the AWS ami used for 2103 GMOD Maker Tutorial, ami-ea661f83. But wanted to use the vm locally, which is not possible with AWS ami's. Any help / pointer in right direction is appreciated. Regards,--Prakhar GaurSenior Research FellowMicrobiology @ Indian Agriculture Research InstituteNew Delhi, IN. -------------- next part -------------- An HTML attachment was scrubbed... URL: From prakhar_aaidu16 at hotmail.com Wed Jan 15 23:43:23 2014 From: prakhar_aaidu16 at hotmail.com (PRAKHAR gaur) Date: Thu, 16 Jan 2014 12:13:23 +0530 Subject: [maker-devel] Maker Virtual Machine Image In-Reply-To: References: , Message-ID: Hello Dan, The sample is a Prokaryotic genome, assembly size is greater than 6Mbp (rules out Web-Maker) Maker 2.30 is beta release hence did not try it out, will do that now. I have installed Maker before and its not a trivial task, hence the question about Virtual Machine. Since I am already struggling with installing Prokka and DIYA. If a virtual machine is available it would save ~ 3 days time, otherwise I will install from bottom up! Regards,--Prakhar GaurSenior Research FellowMicrobiology @ Indian Agriculture Research InstituteNew Delhi, IN. From: ddvanderpool at gmail.com Subject: Re: [maker-devel] Maker Virtual Machine Image Date: Wed, 15 Jan 2014 23:17:30 -0700 To: prakhar_aaidu16 at hotmail.com Hello Prakhar, Is there a reason you have not tried installing 2.30? I have it running on Debian 7 and it was fairly straight forward. Additionally, the multithreading speeds everything up so that I can annotate several smaller eukaryote genomes in one day. which dependencies and libraries are the problem? Dan VanderpoolUniversity of MontanaMcCutcheon LabHealth Sciences 304Missoula, MT 59812Office: 406-243-6106ddvanderpool at gmail.com On Jan 15, 2014, at 11:12 PM, PRAKHAR gaur wrote:Hello, I am having multiple dependency related and library version issues installing Maker 2.28 on Debian 7 So would like to ask if there is a easy way out?Is there a vm image with Maker available for download from somewhere? I know about the AWS ami used for 2103 GMOD Maker Tutorial, ami-ea661f83. But wanted to use the vm locally, which is not possible with AWS ami's. Any help / pointer in right direction is appreciated. Regards,--Prakhar GaurSenior Research FellowMicrobiology @ Indian Agriculture Research InstituteNew Delhi, IN._______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org -------------- next part -------------- An HTML attachment was scrubbed... URL: From barry.utah at gmail.com Thu Jan 16 07:16:18 2014 From: barry.utah at gmail.com (Barry Moore) Date: Thu, 16 Jan 2014 07:16:18 -0700 Subject: [maker-devel] Maker Virtual Machine Image In-Reply-To: References: Message-ID: Hi Prakar, We don't regularly create VMs of MAKER, but if you can give us some details on the install issues and well help you sort through them and fix any problems that you may have uncovered. Barry On Jan 15, 2014, at 11:12 PM, PRAKHAR gaur wrote: > Hello, > > I am having multiple dependency related and library version issues installing Maker 2.28 on Debian 7 > > So would like to ask if there is a easy way out? > Is there a vm image with Maker available for download from somewhere? > > I know about the AWS ami used for 2103 GMOD Maker Tutorial, ami-ea661f83. > > But wanted to use the vm locally, which is not possible with AWS ami's. > > Any help / pointer in right direction is appreciated. > > Regards, > -- > Prakhar Gaur > Senior Research Fellow > Microbiology @ Indian Agriculture Research Institute > New Delhi, IN. > _______________________________________________ > maker-devel mailing list > maker-devel at box290.bluehost.com > http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org Barry Moore Research Scientist Dept. of Human Genetics University of Utah Salt Lake City, UT 84112 -------------------------------------------- (801) 585-3543 -------------- next part -------------- An HTML attachment was scrubbed... URL: From saneasheikh at gmail.com Thu Jan 16 03:52:29 2014 From: saneasheikh at gmail.com (Sanea Sheikh) Date: Thu, 16 Jan 2014 11:52:29 +0100 Subject: [maker-devel] Fwd: Problem with re-annotation In-Reply-To: References: Message-ID: Hello Carson Here it is. Sanea On Tue, Jan 14, 2014 at 1:39 AM, Carson Holt wrote: > Hi Sanea, > > There are no snap calls in your results. It?s as if SNAP never even ran. > Did you capture STDERR from your second run? If so can you send it to me. > I just want to see if it even shows SNAP as having run in the progress > reports. > > Thanks, > Carson > > From: Sanea Sheikh > Date: Monday, January 13, 2014 at 2:17 AM > To: > Subject: [maker-devel] Problem with re-annotation > > Hello > > I am using Maker to annotate a genome for which I only have EST data and > some protein data. I ran Maker once using this EST and protein data > (est2genome=1, protein2genome=1). I had the Maker output. I combined all > the GFF files for all the contigs. I used the combined GFF file to train > SNAP which gave me a .hmm file. Now I modified the Maker opts control file. > I provided the hmm file in snap_hmm. I set est2genome=0 and > protein2genome=0. I ran Maker again assuming that now I have trained the > gene predictor and I would have better annotations. But now the output file > that I get does not have Maker annotation. I have attached the control > files and the output file for the re-run so you can have a look and let me > know what I am doing wrong in order to re-annotate the genome using the > output from the previous run. > > Sanea > _______________________________________________ maker-devel mailing list > maker-devel at box290.bluehost.com > http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org > -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- [saneash at milou2 re-run0]$ module load bioinfo-tools [saneash at milou2 re-run0]$ module load maker/2.28 [saneash at milou2 re-run0]$ maker STATUS: Parsing control files... STATUS: Processing and indexing input FASTA files... STATUS: Setting up database for any GFF3 input... A data structure will be created for you at: /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore To access files for individual sequences use the datastore index: /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_master_datastore_index.log STATUS: Now running MAKER... examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C1 Length: 58489 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0 -pa 1 #-------------------------------# doing blastx repeats formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:4 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:4 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:4 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:4 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:4 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:1 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:5 current j:0 j_size:5 current j:1 j_size:5 current j:2 j_size:5 current j:3 j_size:5 current j:4 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C1.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C1.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11053%7Crhogap.for.4526-6082.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.4526-6082.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.4526-6082.Ar_EST_120301b_c11053%7Crhogap.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c268%7Crhogap.for.5511-6995.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.5511-6995.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.5511-6995.Ar_EST_120301b_c268%7Crhogap.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2803%7Cprotein.for.6572-8321.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.6572-8321.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.6572-8321.Ar_EST_120301b_c2803%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18685%7C5.for.10389-12250.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.10389-12250.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.10389-12250.Ar_EST_120301b_c18685%7C5.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20527%7C5.for.11857-13265.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.11857-13265.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.11857-13265.Ar_EST_120301b_c20527%7C5.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c607%7C---NA---.for.12934-14282.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.12934-14282.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.12934-14282.Ar_EST_120301b_c607%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10671%7Cn-acylethanolamine-hydrolyzing.for.13964-15360.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.13964-15360.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.13964-15360.Ar_EST_120301b_c10671%7Cn-acylethanolamine-hydrolyzing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17817%7C26s.for.14494-15869.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.14494-15869.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.14494-15869.Ar_EST_120301b_c17817%7C26s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2291%7Cautophagy.for.15736-17754.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.15736-17754.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.15736-17754.Ar_EST_120301b_c2291%7Cautophagy.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17723%7Ccci.for.17326-18646.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.17326-18646.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.17326-18646.Ar_EST_120301b_c17723%7Ccci.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13159%7Cair9.for.19436-20822.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.19436-20822.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.19436-20822.Ar_EST_120301b_c13159%7Cair9.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11534%7Cair9.for.20126-21431.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.20126-21431.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.20126-21431.Ar_EST_120301b_c11534%7Cair9.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15074%7Cair9.for.20452-21494.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.20452-21494.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.20452-21494.Ar_EST_120301b_c15074%7Cair9.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1253%7Cf-box.for.22970-24212.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.22970-24212.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.22970-24212.Ar_EST_120301b_c1253%7Cf-box.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17132%7Calkylated.for.24491-25995.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.24491-25995.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.24491-25995.Ar_EST_120301b_c17132%7Calkylated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9069%7Cam193219.for.31057-32071.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.31057-32071.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.31057-32071.Ar_EST_120301b_c9069%7Cam193219.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10823%7Ccr05-c1-100-012-f08-.for.33886-35415.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.33886-35415.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.33886-35415.Ar_EST_120301b_c10823%7Ccr05-c1-100-012-f08-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c930%7Cprotein.for.38557-40055.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.38557-40055.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.38557-40055.Ar_EST_120301b_c930%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18260%7Cunq127-.for.40476-41781.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.40476-41781.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.40476-41781.Ar_EST_120301b_c18260%7Cunq127-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2552%7Cprotein.for.48234-49551.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.48234-49551.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.48234-49551.Ar_EST_120301b_c2552%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2497%7Cprotein.for.48058-49397.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.48058-49397.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.48058-49397.Ar_EST_120301b_c2497%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1789%7Cprotein.for.48205-49551.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.48205-49551.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.48205-49551.Ar_EST_120301b_c1789%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18050%7Ccto.for.49972-51260.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.49972-51260.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.49972-51260.Ar_EST_120301b_c18050%7Ccto.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9640%7Cmethyltransferase.for.51502-53111.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.51502-53111.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.51502-53111.Ar_EST_120301b_c9640%7Cmethyltransferase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17917%7Ccht.for.52335-53662.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.52335-53662.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.52335-53662.Ar_EST_120301b_c17917%7Ccht.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16986%7Cvcdc13845.for.55765-57091.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.55765-57091.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.55765-57091.Ar_EST_120301b_c16986%7Cvcdc13845.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 flattening EST clusters doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:36 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:40 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:35 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:65 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:45 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:50 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:34 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:50 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:39 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:30 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088766%7Cgb%7CEFC42427%2E1%7C.for.4953-6967.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.4953-6967.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.4953-6967.gi%7C284088766%7Cgb%7CEFC42427%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083894%7Cgb%7CEFC37592%2E1%7C.for.6309-7884.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.6309-7884.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.6309-7884.gi%7C284083894%7Cgb%7CEFC37592%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089795%7Cgb%7CEFC43450%2E1%7C.for.6219-8277.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.6219-8277.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.6219-8277.gi%7C284089795%7Cgb%7CEFC43450%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097098%7Cgb%7CEFC50725%2E1%7C.for.15836-17505.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.15836-17505.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.15836-17505.gi%7C284097098%7Cgb%7CEFC50725%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095290%7Cgb%7CEFC48921%2E1%7C.for.24561-26053.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.24561-26053.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.24561-26053.gi%7C284095290%7Cgb%7CEFC48921%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085158%7Cgb%7CEFC38844%2E1%7C.for.25336-26753.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.25336-26753.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.25336-26753.gi%7C284085158%7Cgb%7CEFC38844%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096842%7Cgb%7CEFC50469%2E1%7C.for.26367-28540.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.26367-28540.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.26367-28540.gi%7C284096842%7Cgb%7CEFC50469%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081501%7Cgb%7CEFC35480%2E1%7C.for.38104-39098.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.38104-39098.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.38104-39098.gi%7C284081501%7Cgb%7CEFC35480%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085657%7Cgb%7CEFC39339%2E1%7C.for.38104-39098.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.38104-39098.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.38104-39098.gi%7C284085657%7Cgb%7CEFC39339%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.for.41924-44025.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41924-44025.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41924-44025.gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090673%7Cgb%7CEFC44323%2E1%7C.for.41960-43878.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41960-43878.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41960-43878.gi%7C284090673%7Cgb%7CEFC44323%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.for.41960-43902.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41960-43902.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41960-43902.gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094023%7Cgb%7CEFC47658%2E1%7C.for.41957-44109.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41957-44109.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41957-44109.gi%7C284094023%7Cgb%7CEFC47658%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.for.41954-43965.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41954-43965.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41954-43965.gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C464854%7Csp%7CP34108%2E1%7CTBB_NAEGR.for.45443-47597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.gi%7C464854%7Csp%7CP34108%2E1%7CTBB_NAEGR.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086940%7Cgb%7CEFC40613%2E1%7C.for.45578-47603.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45578-47603.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45578-47603.gi%7C284086940%7Cgb%7CEFC40613%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C9737%7Cemb%7CCAA78362%2E1%7C.for.45443-47597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.gi%7C9737%7Cemb%7CCAA78362%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082800%7Cgb%7CEFC36511%2E1%7C.for.45443-47597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.gi%7C284082800%7Cgb%7CEFC36511%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086082%7Cgb%7CEFC39761%2E1%7C.for.45443-47597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.gi%7C284086082%7Cgb%7CEFC39761%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091464%7Cgb%7CEFC45110%2E1%7C.for.45440-47621.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45440-47621.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45440-47621.gi%7C284091464%7Cgb%7CEFC45110%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C15082214%7Cgb%7CAAK84066%2E1%7CAF401641_1.for.45443-46787.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-46787.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-46787.gi%7C15082214%7Cgb%7CAAK84066%2E1%7CAF401641_1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093591%7Cgb%7CEFC47228%2E1%7C.for.45440-47594.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45440-47594.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45440-47594.gi%7C284093591%7Cgb%7CEFC47228%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091812%7Cgb%7CEFC45457%2E1%7C.for.45443-47639.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47639.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47639.gi%7C284091812%7Cgb%7CEFC45457%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C829213%7Cemb%7CCAA56940%2E1%7C.for.45443-47597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.gi%7C829213%7Cemb%7CCAA56940%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083707%7Cgb%7CEFC37407%2E1%7C.for.45449-47648.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45449-47648.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45449-47648.gi%7C284083707%7Cgb%7CEFC37407%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084695%7Cgb%7CEFC38385%2E1%7C.for.45443-47597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.gi%7C284084695%7Cgb%7CEFC38385%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083068%7Cgb%7CEFC36775%2E1%7C.for.45443-47597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.gi%7C284083068%7Cgb%7CEFC36775%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096574%7Cgb%7CEFC50202%2E1%7C.for.48315-49510.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.48315-49510.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.48315-49510.gi%7C284096574%7Cgb%7CEFC50202%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:8 now processing 0 total clusters:8 now processing 0 total clusters:8 now processing 0 total clusters:8 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:8 now processing 0 ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:8 now processing 0 total clusters:8 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:8 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:7 now processing 0 ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:14 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:14 now processing 0 total clusters:14 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.4725-6795.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.4725-6795.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.4725-6795.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.10588-12055.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.10588-12055.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.10588-12055.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.12056-13157.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.12056-13157.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.12056-13157.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.15926-18446.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.15926-18446.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.15926-18446.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.23065-23889.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.23065-23889.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.23065-23889.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.24690-25853.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.24690-25853.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.24690-25853.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.26566-28340.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.26566-28340.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.26566-28340.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.38273-38898.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.38273-38898.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.38273-38898.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.40672-41581.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.40672-41581.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.40672-41581.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.45639-47448.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.45639-47448.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.45639-47448.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.48257-49356.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.48257-49356.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.48257-49356.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.50171-51071.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.50171-51071.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.50171-51071.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.55964-56891.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.55964-56891.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.55964-56891.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.6418-8217.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.6418-8217.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.6418-8217.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.13131-14082.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.13131-14082.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.13131-14082.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.14163-15160.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.14163-15160.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.14163-15160.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.19635-21294.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.19635-21294.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.19635-21294.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.23268-24019.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.23268-24019.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.23268-24019.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.25535-26553.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.25535-26553.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.25535-26553.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.31256-31871.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.31256-31871.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.31256-31871.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.34085-35224.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.34085-35224.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.34085-35224.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.51701-53462.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.51701-53462.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.51701-53462.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C2 Length: 117277 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:103 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:75 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:71 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:65 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:81 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:94 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:87 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:81 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:73 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:80 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C2.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C2.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c507%7Chypothetical.for.1-1394.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.1-1394.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.1-1394.Ar_EST_120301b_c507%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14990%7C---NA---.for.640-1498.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.640-1498.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.640-1498.Ar_EST_120301b_c14990%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5131%7CsT7aVVM011J17071.for.761-2391.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.761-2391.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.761-2391.Ar_EST_120301b_rep_c5131%7CsT7aVVM011J17071.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig47%7Ctransmembrane.for.6436-8329.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.6436-8329.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.6436-8329.120301b_Contig47%7Ctransmembrane.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14084%7Cunnamed.for.7758-9064.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.7758-9064.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.7758-9064.Ar_EST_120301b_c14084%7Cunnamed.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9225%7Ctransmembrane.for.8330-9700.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.8330-9700.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.8330-9700.Ar_EST_120301b_c9225%7Ctransmembrane.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14631%7Chydra.for.8696-9907.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.8696-9907.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.8696-9907.Ar_EST_120301b_c14631%7Chydra.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3024%7Cudp-glucose.for.9676-11591.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.9676-11591.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.9676-11591.Ar_EST_120301b_c3024%7Cudp-glucose.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig990%7Cmitochondrial.for.10856-12335.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.10856-12335.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.10856-12335.120301b_Contig990%7Cmitochondrial.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1211%7Cgcn5-related.for.11805-13456.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.11805-13456.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.11805-13456.Ar_EST_120301b_c1211%7Cgcn5-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16722%7Cct752454.for.13015-14306.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.13015-14306.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.13015-14306.Ar_EST_120301b_c16722%7Cct752454.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig224%7Cprotein.for.15919-17709.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.15919-17709.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.15919-17709.120301b_Contig224%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3881%7Cprotein.for.16047-17501.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.16047-17501.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.16047-17501.Ar_EST_120301b_c3881%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2433%7Cgpgc_est03437.for.17128-18491.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.17128-18491.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.17128-18491.Ar_EST_120301b_c2433%7Cgpgc_est03437.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13343%7Cdioscorea.for.17305-18618.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.17305-18618.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.17305-18618.Ar_EST_120301b_c13343%7Cdioscorea.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11728%7Cpiggybac-derived.for.18145-19476.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.18145-19476.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.18145-19476.Ar_EST_120301b_c11728%7Cpiggybac-derived.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8045%7Chypothetical.for.22621-24232.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.22621-24232.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.22621-24232.Ar_EST_120301b_c8045%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12485%7Ch019c03.for.22501-23565.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.22501-23565.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.22501-23565.Ar_EST_120301b_c12485%7Ch019c03.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16884%7Cheat-shocked.for.24359-25393.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.24359-25393.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.24359-25393.Ar_EST_120301b_c16884%7Cheat-shocked.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5131%7CsT7aVVM011J17071.for.25415-26610.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.25415-26610.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.25415-26610.Ar_EST_120301b_rep_c5131%7CsT7aVVM011J17071.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19746%7Cglycoside.for.26440-27757.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.26440-27757.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.26440-27757.Ar_EST_120301b_c19746%7Cglycoside.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig676%7Cglycoside.for.26298-28164.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.26298-28164.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.26298-28164.120301b_Contig676%7Cglycoside.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13860%7Cprotein.for.32010-33342.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.32010-33342.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.32010-33342.Ar_EST_120301b_c13860%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c199%7Cinterferon-related.for.33113-34832.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.33113-34832.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.33113-34832.Ar_EST_120301b_c199%7Cinterferon-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig826%7Cintegral.for.34950-37418.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.34950-37418.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.34950-37418.120301b_Contig826%7Cintegral.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3644%7Crasgef.for.40362-42405.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.40362-42405.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.40362-42405.Ar_EST_120301b_c3644%7Crasgef.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2583%7Crasgef.for.39147-41164.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.39147-41164.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.39147-41164.Ar_EST_120301b_c2583%7Crasgef.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12768%7Crasgef.for.41845-43175.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.41845-43175.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.41845-43175.Ar_EST_120301b_c12768%7Crasgef.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16000%7Cprotein.for.42497-43802.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.42497-43802.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.42497-43802.Ar_EST_120301b_c16000%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12166%7Cdedicator.for.43827-45754.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.43827-45754.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.43827-45754.Ar_EST_120301b_c12166%7Cdedicator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12629%7Cpeptidyl-prolyl.for.46674-48006.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46674-48006.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46674-48006.Ar_EST_120301b_c12629%7Cpeptidyl-prolyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4714%7Crac.for.50959-53161.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.50959-53161.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.50959-53161.Ar_EST_120301b_rep_c4714%7Crac.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11446%7C40s.for.51193-52314.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51193-52314.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51193-52314.Ar_EST_120301b_rep_c11446%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7175%7Crac-beta.for.51491-53136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51491-53136.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51491-53136.Ar_EST_120301b_rep_c7175%7Crac-beta.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17186%7Cprotein.for.52528-54217.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52528-54217.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52528-54217.Ar_EST_120301b_c17186%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17524%7Ccto.for.59145-60473.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.59145-60473.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.59145-60473.Ar_EST_120301b_c17524%7Ccto.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c989%7Cprotease.for.60132-61476.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.60132-61476.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.60132-61476.Ar_EST_120301b_c989%7Cprotease.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7983%7Cendonuclease.for.60911-62507.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.60911-62507.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.60911-62507.Ar_EST_120301b_c7983%7Cendonuclease.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20027%7Cgtp-binding.for.62798-64102.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.62798-64102.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.62798-64102.Ar_EST_120301b_c20027%7Cgtp-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18683%7Cg-protein.for.62454-63870.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.62454-63870.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.62454-63870.Ar_EST_120301b_c18683%7Cg-protein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16992%7Cnovel.for.63760-65049.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.63760-65049.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.63760-65049.Ar_EST_120301b_c16992%7Cnovel.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10583%7Clipase.for.68765-70207.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.68765-70207.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.68765-70207.Ar_EST_120301b_c10583%7Clipase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11588%7C---NA---.for.69933-71292.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.69933-71292.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.69933-71292.Ar_EST_120301b_c11588%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1963%7Cprotein.for.70510-71966.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.70510-71966.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.70510-71966.Ar_EST_120301b_c1963%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20347%7Cpeptidase.for.74316-75861.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.74316-75861.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.74316-75861.Ar_EST_120301b_c20347%7Cpeptidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20105%7Cserine.for.73290-75800.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.73290-75800.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.73290-75800.Ar_EST_120301b_c20105%7Cserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13314%7Ckaan-.for.76588-77926.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.76588-77926.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.76588-77926.Ar_EST_120301b_c13314%7Ckaan-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17187%7Cljna722tf.for.78662-79915.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.78662-79915.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.78662-79915.Ar_EST_120301b_c17187%7Cljna722tf.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14075%7Cipt.for.80654-82283.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.80654-82283.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.80654-82283.Ar_EST_120301b_c14075%7Cipt.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2151%7Cegf-like.for.80564-82712.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.80564-82712.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.80564-82712.Ar_EST_120301b_c2151%7Cegf-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15871%7Cgm-r1089.for.81864-83119.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.81864-83119.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.81864-83119.Ar_EST_120301b_c15871%7Cgm-r1089.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3019%7Crcc1.for.82360-83500.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.82360-83500.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.82360-83500.Ar_EST_120301b_c3019%7Crcc1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18457%7Cregulator.for.82761-84301.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.82761-84301.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.82761-84301.Ar_EST_120301b_c18457%7Cregulator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2002%7Cmitochondrial.for.84168-85833.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.84168-85833.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.84168-85833.Ar_EST_120301b_c2002%7Cmitochondrial.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16158%7Cthioredoxin.for.86999-88287.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.86999-88287.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.86999-88287.Ar_EST_120301b_c16158%7Cthioredoxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10238%7Ccto.for.88444-90125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.88444-90125.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.88444-90125.Ar_EST_120301b_c10238%7Ccto.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c525%7Ctranscription.for.89357-91075.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.89357-91075.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.89357-91075.Ar_EST_120301b_c525%7Ctranscription.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10630%7Cpredicted.for.90701-91993.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.90701-91993.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.90701-91993.Ar_EST_120301b_c10630%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3446%7Cwd.for.94044-95698.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.94044-95698.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.94044-95698.Ar_EST_120301b_c3446%7Cwd.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2740%7Cbromodomain.for.95217-96781.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.95217-96781.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.95217-96781.Ar_EST_120301b_c2740%7Cbromodomain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14182%7Cwd40.for.95143-96256.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.95143-96256.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.95143-96256.Ar_EST_120301b_c14182%7Cwd40.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2955%7Cwd.for.96139-98603.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.96139-98603.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.96139-98603.Ar_EST_120301b_c2955%7Cwd.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15897%7Cwd.for.96376-97474.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.96376-97474.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.96376-97474.Ar_EST_120301b_c15897%7Cwd.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1239%7C---NA---.for.98316-99620.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.98316-99620.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.98316-99620.Ar_EST_120301b_c1239%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1149%7Cbeta-galactosidase.for.101237-104546.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.101237-104546.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.101237-104546.Ar_EST_120301b_c1149%7Cbeta-galactosidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18482%7C---NA---.for.103754-105055.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.103754-105055.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.103754-105055.Ar_EST_120301b_c18482%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17585%7Csuppressor.for.104275-105642.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.104275-105642.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.104275-105642.Ar_EST_120301b_c17585%7Csuppressor.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9748%7Cphytanoyl-.for.105274-106624.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.105274-106624.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.105274-106624.Ar_EST_120301b_c9748%7Cphytanoyl-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16625%7Cixodes.for.108291-109796.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.108291-109796.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.108291-109796.Ar_EST_120301b_c16625%7Cixodes.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig957%7Cprolyl.for.111713-113469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.111713-113469.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.111713-113469.120301b_Contig957%7Cprolyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c341%7Cprolyl.for.112916-114615.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.112916-114615.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.112916-114615.Ar_EST_120301b_c341%7Cprolyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19609%7C60s.for.114043-115231.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.114043-115231.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.114043-115231.Ar_EST_120301b_rep_c19609%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c363%7Cprotein.for.115090-116629.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.115090-116629.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.115090-116629.Ar_EST_120301b_c363%7Cprotein.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:52 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:52 now processing 0 total clusters:52 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:52 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:52 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:72 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:65 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:74 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:81 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:70 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:73 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:60 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:72 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:77 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:58 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094603%7Cgb%7CEFC48237%2E1%7C.for.9805-11564.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.9805-11564.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.9805-11564.gi%7C284094603%7Cgb%7CEFC48237%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083050%7Cgb%7CEFC36758%2E1%7C.for.16040-17692.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.16040-17692.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.16040-17692.gi%7C284083050%7Cgb%7CEFC36758%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096069%7Cgb%7CEFC49698%2E1%7C.for.16040-17659.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.16040-17659.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.16040-17659.gi%7C284096069%7Cgb%7CEFC49698%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091333%7Cgb%7CEFC44980%2E1%7C.for.27718-29412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.27718-29412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.27718-29412.gi%7C284091333%7Cgb%7CEFC44980%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089590%7Cgb%7CEFC43247%2E1%7C.for.39144-41128.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.39144-41128.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.39144-41128.gi%7C284089590%7Cgb%7CEFC43247%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089589%7Cgb%7CEFC43246%2E1%7C.for.39144-41128.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.39144-41128.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.39144-41128.gi%7C284089589%7Cgb%7CEFC43246%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081155%7Cgb%7CEFC35313%2E1%7C.for.46491-47770.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47770.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47770.gi%7C284081155%7Cgb%7CEFC35313%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092983%7Cgb%7CEFC46623%2E1%7C.for.46491-47770.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47770.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47770.gi%7C284092983%7Cgb%7CEFC46623%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093592%7Cgb%7CEFC47229%2E1%7C.for.46503-47767.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46503-47767.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46503-47767.gi%7C284093592%7Cgb%7CEFC47229%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089692%7Cgb%7CEFC43348%2E1%7C.for.46503-47779.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46503-47779.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46503-47779.gi%7C284089692%7Cgb%7CEFC43348%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088464%7Cgb%7CEFC42127%2E1%7C.for.46491-47770.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47770.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47770.gi%7C284088464%7Cgb%7CEFC42127%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094883%7Cgb%7CEFC48516%2E1%7C.for.46497-47776.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46497-47776.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46497-47776.gi%7C284094883%7Cgb%7CEFC48516%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095464%7Cgb%7CEFC49095%2E1%7C.for.46491-47767.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47767.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47767.gi%7C284095464%7Cgb%7CEFC49095%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090503%7Cgb%7CEFC44154%2E1%7C.for.46491-47770.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47770.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47770.gi%7C284090503%7Cgb%7CEFC44154%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086458%7Cgb%7CEFC40134%2E1%7C.for.46491-47773.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47773.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47773.gi%7C284086458%7Cgb%7CEFC40134%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094068%7Cgb%7CEFC47703%2E1%7C.for.51383-53046.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51383-53046.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51383-53046.gi%7C284094068%7Cgb%7CEFC47703%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094875%7Cgb%7CEFC48508%2E1%7C.for.50957-53136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.50957-53136.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.50957-53136.gi%7C284094875%7Cgb%7CEFC48508%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094832%7Cgb%7CEFC48465%2E1%7C.for.50972-53136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.50972-53136.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.50972-53136.gi%7C284094832%7Cgb%7CEFC48465%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088361%7Cgb%7CEFC42025%2E1%7C.for.51365-53046.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51365-53046.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51365-53046.gi%7C284088361%7Cgb%7CEFC42025%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090070%7Cgb%7CEFC43724%2E1%7C.for.51362-53094.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51362-53094.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51362-53094.gi%7C284090070%7Cgb%7CEFC43724%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085317%7Cgb%7CEFC39002%2E1%7C.for.52410-54205.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52410-54205.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52410-54205.gi%7C284085317%7Cgb%7CEFC39002%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081068%7Cgb%7CEFC35282%2E1%7C.for.52797-54004.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52797-54004.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52797-54004.gi%7C284081068%7Cgb%7CEFC35282%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.for.52776-53791.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52776-53791.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52776-53791.gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091625%7Cgb%7CEFC45271%2E1%7C.for.52410-54199.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52410-54199.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52410-54199.gi%7C284091625%7Cgb%7CEFC45271%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096422%7Cgb%7CEFC50050%2E1%7C.for.52410-54208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52410-54208.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52410-54208.gi%7C284096422%7Cgb%7CEFC50050%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097050%7Cgb%7CEFC50677%2E1%7C.for.52416-54202.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52416-54202.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52416-54202.gi%7C284097050%7Cgb%7CEFC50677%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090562%7Cgb%7CEFC44213%2E1%7C.for.66633-67624.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66633-67624.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66633-67624.gi%7C284090562%7Cgb%7CEFC44213%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092309%7Cgb%7CEFC45952%2E1%7C.for.66693-67995.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66693-67995.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66693-67995.gi%7C284092309%7Cgb%7CEFC45952%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090708%7Cgb%7CEFC44358%2E1%7C.for.66516-67624.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66516-67624.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66516-67624.gi%7C284090708%7Cgb%7CEFC44358%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093840%7Cgb%7CEFC47476%2E1%7C.for.66690-67615.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66690-67615.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66690-67615.gi%7C284093840%7Cgb%7CEFC47476%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081311%7Cgb%7CEFC35385%2E1%7C.for.66618-67624.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66618-67624.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66618-67624.gi%7C284081311%7Cgb%7CEFC35385%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082866%7Cgb%7CEFC36576%2E1%7C.for.70396-71585.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.70396-71585.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.70396-71585.gi%7C284082866%7Cgb%7CEFC36576%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082849%7Cgb%7CEFC36560%2E1%7C.for.73129-75157.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.73129-75157.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.73129-75157.gi%7C284082849%7Cgb%7CEFC36560%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.for.80650-81731.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.80650-81731.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.80650-81731.gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089151%7Cgb%7CEFC42810%2E1%7C.for.87117-88275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.87117-88275.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.87117-88275.gi%7C284089151%7Cgb%7CEFC42810%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095219%7Cgb%7CEFC48850%2E1%7C.for.111697-114629.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.111697-114629.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.111697-114629.gi%7C284095219%7Cgb%7CEFC48850%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086650%7Cgb%7CEFC40325%2E1%7C.for.115979-117015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.115979-117015.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.115979-117015.gi%7C284086650%7Cgb%7CEFC40325%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:9 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:9 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:7 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:7 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:26 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.954-2217.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.954-2217.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.954-2217.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.9875-14112.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.9875-14112.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.9875-14112.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.16118-18418.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.16118-18418.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.16118-18418.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.22820-24032.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.22820-24032.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.22820-24032.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.51156-52963.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.51156-52963.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.51156-52963.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.59344-62307.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.59344-62307.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.59344-62307.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.68964-70007.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.68964-70007.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.68964-70007.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.70132-71766.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.70132-71766.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.70132-71766.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.76787-77726.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.76787-77726.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.76787-77726.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.78861-79715.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.78861-79715.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.78861-79715.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.84367-85636.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.84367-85636.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.84367-85636.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.94243-98403.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.94243-98403.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.94243-98403.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.98513-99420.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.98513-99420.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.98513-99420.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.101436-105465.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.101436-105465.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.101436-105465.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.105473-106424.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.105473-106424.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.105473-106424.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.115289-116429.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.115289-116429.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.115289-116429.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.6631-9707.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.6631-9707.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.6631-9707.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.26497-27964.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.26497-27964.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.26497-27964.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.32196-33142.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.32196-33142.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.32196-33142.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.35149-37218.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.35149-37218.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.35149-37218.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.39346-43602.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.39346-43602.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.39346-43602.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.44026-45564.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.44026-45564.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.44026-45564.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.46690-47806.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.46690-47806.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.46690-47806.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.52615-54017.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.52615-54017.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.52615-54017.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.62650-64855.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.62650-64855.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.62650-64855.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.66715-67795.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.66715-67795.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.66715-67795.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.73328-75726.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.73328-75726.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.73328-75726.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.80763-84101.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.80763-84101.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.80763-84101.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.87198-88087.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.87198-88087.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.87198-88087.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.88643-90875.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.88643-90875.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.88643-90875.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.90900-91793.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.90900-91793.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.90900-91793.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.108490-109596.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.108490-109596.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.108490-109596.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.111879-114429.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.111879-114429.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.111879-114429.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.116098-116885.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.116098-116885.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.116098-116885.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C4 Length: 65381 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C4.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C4.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10892%7C0082817.for.1-1025.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.1-1025.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.1-1025.Ar_EST_120301b_c10892%7C0082817.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12497%7Cpl08003b1g07.for.464-1964.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.464-1964.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.464-1964.Ar_EST_120301b_c12497%7Cpl08003b1g07.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9064%7Chypothetical.for.1180-2583.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.1180-2583.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.1180-2583.Ar_EST_120301b_c9064%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14018%7Cui-s-gu1-aee-p-13-0-.for.2150-3327.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.2150-3327.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.2150-3327.Ar_EST_120301b_c14018%7Cui-s-gu1-aee-p-13-0-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16392%7Ctm2.for.3881-5011.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3881-5011.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3881-5011.Ar_EST_120301b_rep_c16392%7Ctm2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18540%7Cpredicted.for.4013-5052.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.4013-5052.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.4013-5052.Ar_EST_120301b_rep_c18540%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19988%7Ctm2.for.4002-4998.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.4002-4998.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.4002-4998.Ar_EST_120301b_rep_c19988%7Ctm2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17214%7Ctm2.for.3986-5028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3986-5028.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3986-5028.Ar_EST_120301b_rep_c17214%7Ctm2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15650%7Cpredicted.for.3969-4990.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3969-4990.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3969-4990.Ar_EST_120301b_rep_c15650%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7924%7Cpredicted.for.3983-5062.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3983-5062.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3983-5062.Ar_EST_120301b_rep_c7924%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6312%7Cribosomal.for.3930-4999.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3930-4999.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3930-4999.Ar_EST_120301b_rep_c6312%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4538%7Ctm2.for.3881-5023.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3881-5023.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3881-5023.Ar_EST_120301b_rep_c4538%7Ctm2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13709%7Cintegrator.for.6912-8195.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.6912-8195.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.6912-8195.Ar_EST_120301b_c13709%7Cintegrator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9675%7Cculex.for.9178-10584.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.9178-10584.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.9178-10584.Ar_EST_120301b_c9675%7Cculex.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c257%7Cqg_abcdi.for.9988-11249.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.9988-11249.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.9988-11249.Ar_EST_120301b_c257%7Cqg_abcdi.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8616%7Cclp.for.16774-18142.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.16774-18142.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.16774-18142.Ar_EST_120301b_rep_c8616%7Cclp.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c673%7Ccathepsin.for.22385-24283.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.22385-24283.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.22385-24283.Ar_EST_120301b_c673%7Ccathepsin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16839%7Cn-acetylglucosaminyl-phosphatidylinositol.for.24238-25543.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.24238-25543.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.24238-25543.Ar_EST_120301b_c16839%7Cn-acetylglucosaminyl-phosphatidylinositol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13622%7Cpredicted.for.27404-28719.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.27404-28719.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.27404-28719.Ar_EST_120301b_c13622%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3407%7Cabc.for.28182-30134.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.28182-30134.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.28182-30134.Ar_EST_120301b_c3407%7Cabc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13324%7Cpeptidase.for.29844-31104.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.29844-31104.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.29844-31104.Ar_EST_120301b_c13324%7Cpeptidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17579%7Ccafy.for.30948-32538.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.30948-32538.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.30948-32538.Ar_EST_120301b_c17579%7Ccafy.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17883%7Cme1-0071p-a159-f12-.for.32347-33734.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.32347-33734.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.32347-33734.Ar_EST_120301b_c17883%7Cme1-0071p-a159-f12-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c321%7Crho.for.33136-34435.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.33136-34435.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.33136-34435.Ar_EST_120301b_c321%7Crho.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1291%7Cgolgin.for.33807-35294.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.33807-35294.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.33807-35294.120301b_Contig1291%7Cgolgin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8512%7Crho.for.34096-36128.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.34096-36128.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.34096-36128.Ar_EST_120301b_c8512%7Crho.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4149%7Ccathepsin.for.36731-38881.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.36731-38881.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.36731-38881.Ar_EST_120301b_rep_c4149%7Ccathepsin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13879%7Ccathepsin.for.36811-38313.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.36811-38313.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.36811-38313.Ar_EST_120301b_rep_c13879%7Ccathepsin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig493%7Cgut.for.37440-38856.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.37440-38856.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.37440-38856.120301b_Contig493%7Cgut.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19441%7C40s.for.37322-38430.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.37322-38430.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.37322-38430.Ar_EST_120301b_rep_c19441%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6027%7Ccysteine.for.36676-38177.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.36676-38177.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.36676-38177.Ar_EST_120301b_rep_c6027%7Ccysteine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10144%7Ccathepsin.for.37675-38749.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.37675-38749.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.37675-38749.Ar_EST_120301b_rep_c10144%7Ccathepsin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12182%7Cdigestive.for.36933-38320.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.36933-38320.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.36933-38320.Ar_EST_120301b_rep_c12182%7Cdigestive.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1163%7Cprotein.for.40718-42567.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.40718-42567.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.40718-42567.120301b_Contig1163%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c335%7Cglucosamine-6-phosphate.for.42267-44759.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.42267-44759.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.42267-44759.Ar_EST_120301b_c335%7Cglucosamine-6-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13169%7Cglucosamine-6-phosphate.for.42266-43240.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.42266-43240.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.42266-43240.Ar_EST_120301b_c13169%7Cglucosamine-6-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12559%7Cendocytosis.for.45717-47004.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.45717-47004.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.45717-47004.Ar_EST_120301b_c12559%7Cendocytosis.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4411%7Cfyve-type.for.46516-48423.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.46516-48423.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.46516-48423.Ar_EST_120301b_rep_c4411%7Cfyve-type.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13558%7Ccomm.for.50698-52032.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.50698-52032.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.50698-52032.Ar_EST_120301b_c13558%7Ccomm.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15742%7Ctrna.for.52178-53369.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.52178-53369.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.52178-53369.Ar_EST_120301b_c15742%7Ctrna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16117%7Csmall.for.53247-54540.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.53247-54540.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.53247-54540.Ar_EST_120301b_c16117%7Csmall.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17565%7Cconserved.for.63969-65310.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.63969-65310.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.63969-65310.Ar_EST_120301b_c17565%7Cconserved.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:36 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:36 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:42 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:48 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:46 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:50 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:42 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:31 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090220%7Cgb%7CEFC43873%2E1%7C.for.18520-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18520-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18520-19886.gi%7C284090220%7Cgb%7CEFC43873%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085812%7Cgb%7CEFC39493%2E1%7C.for.18466-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18466-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18466-19886.gi%7C284085812%7Cgb%7CEFC39493%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095573%7Cgb%7CEFC49203%2E1%7C.for.18523-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18523-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18523-19886.gi%7C284095573%7Cgb%7CEFC49203%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092862%7Cgb%7CEFC46502%2E1%7C.for.18535-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18535-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18535-19886.gi%7C284092862%7Cgb%7CEFC46502%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090872%7Cgb%7CEFC44522%2E1%7C.for.18538-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18538-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18538-19886.gi%7C284090872%7Cgb%7CEFC44522%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081627%7Cgb%7CEFC35562%2E1%7C.for.18802-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18802-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18802-19886.gi%7C284081627%7Cgb%7CEFC35562%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095689%7Cgb%7CEFC49319%2E1%7C.for.18511-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18511-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18511-19886.gi%7C284095689%7Cgb%7CEFC49319%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090598%7Cgb%7CEFC44249%2E1%7C.for.18508-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18508-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18508-19886.gi%7C284090598%7Cgb%7CEFC44249%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092337%7Cgb%7CEFC45979%2E1%7C.for.18523-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18523-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18523-19886.gi%7C284092337%7Cgb%7CEFC45979%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087750%7Cgb%7CEFC41418%2E1%7C.for.18466-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18466-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18466-19886.gi%7C284087750%7Cgb%7CEFC41418%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097171%7Cgb%7CEFC50798%2E1%7C.for.18511-19877.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18511-19877.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18511-19877.gi%7C284097171%7Cgb%7CEFC50798%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096980%7Cgb%7CEFC50607%2E1%7C.for.18523-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18523-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18523-19886.gi%7C284096980%7Cgb%7CEFC50607%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082060%7Cgb%7CEFC35846%2E1%7C.for.18706-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18706-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18706-19886.gi%7C284082060%7Cgb%7CEFC35846%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089921%7Cgb%7CEFC43576%2E1%7C.for.18469-19655.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18469-19655.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18469-19655.gi%7C284089921%7Cgb%7CEFC43576%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090604%7Cgb%7CEFC44255%2E1%7C.for.18511-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18511-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18511-19886.gi%7C284090604%7Cgb%7CEFC44255%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093718%7Cgb%7CEFC47355%2E1%7C.for.18505-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18505-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18505-19886.gi%7C284093718%7Cgb%7CEFC47355%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087888%7Cgb%7CEFC41555%2E1%7C.for.18511-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18511-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18511-19886.gi%7C284087888%7Cgb%7CEFC41555%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080970%7Cgb%7CEFC35250%2E1%7C.for.23211-24283.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.23211-24283.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.23211-24283.gi%7C284080970%7Cgb%7CEFC35250%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091231%7Cgb%7CEFC44879%2E1%7C.for.22743-24259.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.22743-24259.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.22743-24259.gi%7C284091231%7Cgb%7CEFC44879%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096232%7Cgb%7CEFC49860%2E1%7C.for.24093-26257.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.24093-26257.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.24093-26257.gi%7C284096232%7Cgb%7CEFC49860%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090699%7Cgb%7CEFC44349%2E1%7C.for.27429-30997.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.27429-30997.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.27429-30997.gi%7C284090699%7Cgb%7CEFC44349%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095545%7Cgb%7CEFC49175%2E1%7C.for.28112-31000.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.28112-31000.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.28112-31000.gi%7C284095545%7Cgb%7CEFC49175%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082178%7Cgb%7CEFC35938%2E1%7C.for.38304-39589.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.38304-39589.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.38304-39589.gi%7C284082178%7Cgb%7CEFC35938%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087427%7Cgb%7CEFC41097%2E1%7C.for.38304-39589.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.38304-39589.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.38304-39589.gi%7C284087427%7Cgb%7CEFC41097%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092869%7Cgb%7CEFC46509%2E1%7C.for.40475-43005.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.40475-43005.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.40475-43005.gi%7C284092869%7Cgb%7CEFC46509%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094373%7Cgb%7CEFC48007%2E1%7C.for.41096-42963.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.41096-42963.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.41096-42963.gi%7C284094373%7Cgb%7CEFC48007%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096359%7Cgb%7CEFC49987%2E1%7C.for.42289-45022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.42289-45022.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.42289-45022.gi%7C284096359%7Cgb%7CEFC49987%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090005%7Cgb%7CEFC43659%2E1%7C.for.46531-48269.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.46531-48269.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.46531-48269.gi%7C284090005%7Cgb%7CEFC43659%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087223%7Cgb%7CEFC40894%2E1%7C.for.50687-52053.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.50687-52053.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.50687-52053.gi%7C284087223%7Cgb%7CEFC40894%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080992%7Cgb%7CEFC35256%2E1%7C.for.53422-54539.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.53422-54539.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.53422-54539.gi%7C284080992%7Cgb%7CEFC35256%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.55918-58235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55918-58235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55918-58235.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.for.55918-58208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55918-58208.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55918-58208.gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.for.55927-58211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55927-58211.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55927-58211.gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.for.55918-57080.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55918-57080.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55918-57080.gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.for.55963-57080.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55963-57080.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55963-57080.gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.for.55930-57101.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55930-57101.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55930-57101.gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.for.55918-58214.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55918-58214.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55918-58214.gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.for.55843-58235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55843-58235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55843-58235.gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090146%7Cgb%7CEFC43799%2E1%7C.for.55921-58211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55921-58211.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55921-58211.gi%7C284090146%7Cgb%7CEFC43799%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.for.55927-58559.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55927-58559.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55927-58559.gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.for.55873-58295.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55873-58295.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55873-58295.gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.for.55870-58211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55870-58211.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55870-58211.gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.for.55798-58208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55798-58208.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55798-58208.gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.for.55996-56951.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55996-56951.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55996-56951.gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086531%7Cgb%7CEFC40207%2E1%7C.for.55927-57146.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55927-57146.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55927-57146.gi%7C284086531%7Cgb%7CEFC40207%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.for.55834-58217.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55834-58217.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55834-58217.gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090143%7Cgb%7CEFC43796%2E1%7C.for.55921-58211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55921-58211.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55921-58211.gi%7C284090143%7Cgb%7CEFC43796%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.for.55930-58211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55930-58211.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55930-58211.gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080808%7Cgb%7CEFC35194%2E1%7C.for.55927-57038.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55927-57038.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55927-57038.gi%7C284080808%7Cgb%7CEFC35194%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.for.55963-57038.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55963-57038.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55963-57038.gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:11 now processing 0 total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:11 now processing 0 ...processing 0 of 17 ...processing 1 of 17 ...processing 2 of 17 ...processing 3 of 17 ...processing 4 of 17 ...processing 5 of 17 ...processing 6 of 17 ...processing 7 of 17 ...processing 8 of 17 ...processing 9 of 17 ...processing 10 of 17 ...processing 11 of 17 ...processing 12 of 17 ...processing 13 of 17 ...processing 14 of 17 ...processing 15 of 17 ...processing 16 of 17 total clusters:11 now processing 0 total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 total clusters:11 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 15 ...processing 1 of 15 ...processing 2 of 15 ...processing 3 of 15 ...processing 4 of 15 ...processing 5 of 15 ...processing 6 of 15 ...processing 7 of 15 ...processing 8 of 15 ...processing 9 of 15 ...processing 10 of 15 ...processing 11 of 15 ...processing 12 of 15 ...processing 13 of 15 ...processing 14 of 15 total clusters:7 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:7 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:15 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.0-825.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.0-825.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.0-825.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.2349-3127.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.2349-3127.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.2349-3127.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.4180-4964.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.4180-4964.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.4180-4964.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.7111-7995.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.7111-7995.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.7111-7995.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.9366-11049.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.9366-11049.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.9366-11049.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.24292-26057.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.24292-26057.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.24292-26057.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.27603-30800.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.27603-30800.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.27603-30800.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.36875-38681.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.36875-38681.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.36875-38681.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.40674-42805.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.40674-42805.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.40674-42805.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.50886-51853.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.50886-51853.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.50886-51853.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.53433-54340.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.53433-54340.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.53433-54340.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.56120-58359.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.56120-58359.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.56120-58359.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.64168-65110.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.64168-65110.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.64168-65110.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.4080-4900.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.4080-4900.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.4080-4900.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.18665-19754.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.18665-19754.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.18665-19754.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.22584-24083.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.22584-24083.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.22584-24083.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.30043-30904.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.30043-30904.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.30043-30904.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.31147-32360.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.31147-32360.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.31147-32360.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.33335-35934.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.33335-35934.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.33335-35934.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.38503-39487.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.38503-39487.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.38503-39487.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.42465-44822.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.42465-44822.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.42465-44822.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.45910-48232.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.45910-48232.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.45910-48232.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.52377-53169.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.52377-53169.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.52377-53169.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C5 Length: 131745 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:1 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:4 current j:0 j_size:4 current j:1 j_size:4 current j:2 j_size:4 current j:3 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C5.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C5.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:3 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4927%7Ccoatomer.for.1750-4580.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.1750-4580.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.1750-4580.Ar_EST_120301b_rep_c4927%7Ccoatomer.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c219%7Ccoatomer.for.1117-5675.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.1117-5675.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.1117-5675.Ar_EST_120301b_c219%7Ccoatomer.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5068%7Cprotein.for.999-2306.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.999-2306.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.999-2306.Ar_EST_120301b_rep_c5068%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1870%7Cshort-chain.for.7529-8815.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.7529-8815.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.7529-8815.Ar_EST_120301b_c1870%7Cshort-chain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13983%7Cglycerate.for.9016-10532.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9016-10532.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9016-10532.Ar_EST_120301b_c13983%7Cglycerate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2872%7Cglycerate.for.9011-10422.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9011-10422.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9011-10422.Ar_EST_120301b_c2872%7Cglycerate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1884%7Crho.for.9854-11280.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9854-11280.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9854-11280.Ar_EST_120301b_c1884%7Crho.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18292%7C---NA---.for.11079-12444.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.11079-12444.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.11079-12444.Ar_EST_120301b_c18292%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9251%7Cadenylate.for.11875-13224.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.11875-13224.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.11875-13224.Ar_EST_120301b_c9251%7Cadenylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1113%7Cprotein.for.15259-17252.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.15259-17252.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.15259-17252.120301b_Contig1113%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10689%7Cendonuclease.for.16859-18277.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.16859-18277.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.16859-18277.Ar_EST_120301b_c10689%7Cendonuclease.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11369%7Cphospholipase.for.21668-22878.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.21668-22878.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.21668-22878.Ar_EST_120301b_c11369%7Cphospholipase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18303%7Chypothetical.for.23197-24457.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.23197-24457.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.23197-24457.Ar_EST_120301b_c18303%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig495%7Cprotein.for.26089-27731.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.26089-27731.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.26089-27731.120301b_Contig495%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c738%7Chypothetical.for.25998-27627.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.25998-27627.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.25998-27627.Ar_EST_120301b_c738%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16831%7C---NA---.for.26248-27437.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.26248-27437.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.26248-27437.Ar_EST_120301b_c16831%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3170%7Crna-binding.for.29265-30841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.29265-30841.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.29265-30841.Ar_EST_120301b_c3170%7Crna-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18861%7Csplicing.for.30193-31519.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.30193-31519.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.30193-31519.Ar_EST_120301b_c18861%7Csplicing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18342%7Cehahb38tr.for.31682-32618.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.31682-32618.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.31682-32618.Ar_EST_120301b_rep_c18342%7Cehahb38tr.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig330%7Cactin.for.31093-33168.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.31093-33168.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.31093-33168.120301b_Contig330%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19138%7Chypothetical.for.33677-35187.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.33677-35187.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.33677-35187.Ar_EST_120301b_c19138%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9985%7Clipase.for.33305-34844.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.33305-34844.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.33305-34844.Ar_EST_120301b_c9985%7Clipase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16685%7Ctranslation.for.35667-37110.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.35667-37110.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.35667-37110.Ar_EST_120301b_c16685%7Ctranslation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20389%7Csepticolysin.for.36823-38079.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.36823-38079.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.36823-38079.Ar_EST_120301b_rep_c20389%7Csepticolysin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7158%7Csepticolysin.for.36723-38078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.36723-38078.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.36723-38078.Ar_EST_120301b_rep_c7158%7Csepticolysin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1100%7Csepticolysin.for.36741-38079.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.36741-38079.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.36741-38079.120301b_Contig1100%7Csepticolysin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12800%7Cserine.for.39700-41118.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.39700-41118.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.39700-41118.Ar_EST_120301b_c12800%7Cserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12672%7Cserine.for.40155-41467.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.40155-41467.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.40155-41467.Ar_EST_120301b_c12672%7Cserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14883%7C0156836.for.41198-42449.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.41198-42449.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.41198-42449.Ar_EST_120301b_c14883%7C0156836.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c576%7Cpeptidase.for.42583-44087.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.42583-44087.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.42583-44087.Ar_EST_120301b_c576%7Cpeptidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14550%7Crcc1.for.46429-47518.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.46429-47518.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.46429-47518.Ar_EST_120301b_c14550%7Crcc1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3172%7Cpelecinus.for.48613-50486.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.48613-50486.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.48613-50486.Ar_EST_120301b_c3172%7Cpelecinus.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig705%7Cprobable.for.49720-51442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.49720-51442.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.49720-51442.120301b_Contig705%7Cprobable.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17286%7C1112934329288.for.50896-52235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.50896-52235.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.50896-52235.Ar_EST_120301b_c17286%7C1112934329288.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1584%7Cmyosin.for.51678-53058.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.51678-53058.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.51678-53058.Ar_EST_120301b_c1584%7Cmyosin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18785%7Criboflavin.for.52842-53791.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.52842-53791.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.52842-53791.Ar_EST_120301b_rep_c18785%7Criboflavin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19995%7Criboflavin.for.52637-53860.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.52637-53860.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.52637-53860.Ar_EST_120301b_c19995%7Criboflavin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9495%7Cperoxisome.for.53340-55004.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.53340-55004.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.53340-55004.Ar_EST_120301b_c9495%7Cperoxisome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14%7Cfk506-binding.for.54242-56219.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.54242-56219.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.54242-56219.Ar_EST_120301b_c14%7Cfk506-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17894%7Cbg01.for.57293-58491.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.57293-58491.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.57293-58491.Ar_EST_120301b_c17894%7Cbg01.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2318%7Chermansky-pudlak.for.58366-59946.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.58366-59946.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.58366-59946.Ar_EST_120301b_c2318%7Chermansky-pudlak.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13264%7Cphysarum04582.for.60446-61409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.60446-61409.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.60446-61409.Ar_EST_120301b_c13264%7Cphysarum04582.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig569%7Ctrehalose-6-phosphate.for.60904-62620.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.60904-62620.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.60904-62620.120301b_Contig569%7Ctrehalose-6-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1192%7Chypothetical.for.74768-76995.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.74768-76995.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.74768-76995.120301b_Contig1192%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c940%7C1445745_5_c15_062.for.76417-77860.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.76417-77860.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.76417-77860.Ar_EST_120301b_c940%7C1445745_5_c15_062.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19216%7Ctg.for.77340-78465.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.77340-78465.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.77340-78465.Ar_EST_120301b_rep_c19216%7Ctg.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8441%7Cankyrin.for.78567-80270.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.78567-80270.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.78567-80270.Ar_EST_120301b_c8441%7Cankyrin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3062%7Cnacht.for.78319-79781.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.78319-79781.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.78319-79781.Ar_EST_120301b_c3062%7Cnacht.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig922%7Cthioredoxin.for.81853-83382.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.81853-83382.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.81853-83382.120301b_Contig922%7Cthioredoxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1406%7Chx129285.for.81417-82703.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.81417-82703.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.81417-82703.Ar_EST_120301b_c1406%7Chx129285.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c884%7Ccci.for.83640-85075.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.83640-85075.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.83640-85075.Ar_EST_120301b_c884%7Ccci.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3232%7Csimilarity.for.82705-84656.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.82705-84656.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.82705-84656.Ar_EST_120301b_c3232%7Csimilarity.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15594%7Csimilarity.for.83031-84107.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.83031-84107.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.83031-84107.Ar_EST_120301b_c15594%7Csimilarity.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10733%7C---NA---.for.84023-85289.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.84023-85289.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.84023-85289.Ar_EST_120301b_c10733%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig164%7Cmisexpression.for.86591-88318.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.86591-88318.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.86591-88318.120301b_Contig164%7Cmisexpression.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2393%7Chypothetical.for.86080-87393.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.86080-87393.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.86080-87393.Ar_EST_120301b_c2393%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3126%7Cprotein.for.87842-89519.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.87842-89519.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.87842-89519.Ar_EST_120301b_c3126%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12848%7Caldo.for.89750-91167.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.89750-91167.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.89750-91167.Ar_EST_120301b_c12848%7Caldo.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1669%7C%28aldo.for.89843-91300.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.89843-91300.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.89843-91300.Ar_EST_120301b_c1669%7C%28aldo.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9784%7Chypothetical.for.90835-92394.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.90835-92394.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.90835-92394.Ar_EST_120301b_c9784%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1376%7Cpredicted.for.92016-93662.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.92016-93662.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.92016-93662.120301b_Contig1376%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19862%7Cicpl20102_cw46_f06.for.92623-93606.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.92623-93606.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.92623-93606.Ar_EST_120301b_c19862%7Cicpl20102_cw46_f06.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1340%7C---NA---.for.93186-94487.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.93186-94487.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.93186-94487.Ar_EST_120301b_c1340%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1082%7C---NA---.for.94235-95710.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.94235-95710.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.94235-95710.Ar_EST_120301b_c1082%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig308%7Cnad.for.95110-97107.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.95110-97107.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.95110-97107.120301b_Contig308%7Cnad.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14271%7Crna.for.101533-102830.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.101533-102830.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.101533-102830.Ar_EST_120301b_c14271%7Crna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15637%7Chypothetical.for.103277-104452.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.103277-104452.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.103277-104452.Ar_EST_120301b_c15637%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16787%7Ccchu.for.103813-105125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.103813-105125.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.103813-105125.Ar_EST_120301b_c16787%7Ccchu.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1482%7C30s.for.104418-105784.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.104418-105784.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.104418-105784.Ar_EST_120301b_c1482%7C30s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1205%7Cmdf180_4-28dpi_hb383.for.105373-106697.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.105373-106697.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.105373-106697.Ar_EST_120301b_c1205%7Cmdf180_4-28dpi_hb383.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c938%7Cduo.for.105969-107823.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.105969-107823.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.105969-107823.Ar_EST_120301b_c938%7Cduo.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10147%7C---NA---.for.107361-108436.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.107361-108436.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.107361-108436.Ar_EST_120301b_c10147%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17005%7Cfp072159.for.108422-109291.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.108422-109291.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.108422-109291.Ar_EST_120301b_c17005%7Cfp072159.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12429%7Csubunit.for.108615-109926.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.108615-109926.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.108615-109926.Ar_EST_120301b_c12429%7Csubunit.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10392%7Canolis.for.109947-111462.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.109947-111462.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.109947-111462.Ar_EST_120301b_c10392%7Canolis.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16466%7Cxre.for.114425-115636.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.114425-115636.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.114425-115636.Ar_EST_120301b_c16466%7Cxre.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c196%7Cankyrin.for.113280-115250.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.113280-115250.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.113280-115250.Ar_EST_120301b_c196%7Cankyrin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11093%7Cdomain-containing.for.115928-117488.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.115928-117488.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.115928-117488.Ar_EST_120301b_c11093%7Cdomain-containing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11883%7Cfq355161.for.118590-120174.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.118590-120174.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.118590-120174.Ar_EST_120301b_c11883%7Cfq355161.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15305%7Cccif.for.120353-121637.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.120353-121637.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.120353-121637.Ar_EST_120301b_c15305%7Cccif.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8899%7Csumo.for.120923-122601.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.120923-122601.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.120923-122601.Ar_EST_120301b_c8899%7Csumo.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5398%7Cgadus.for.123283-124857.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.123283-124857.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.123283-124857.Ar_EST_120301b_rep_c5398%7Cgadus.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c594%7Ccbxu.for.122875-124833.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.122875-124833.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.122875-124833.Ar_EST_120301b_c594%7Ccbxu.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9877%7Cubiquitin-activating.for.126067-128042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.126067-128042.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.126067-128042.Ar_EST_120301b_c9877%7Cubiquitin-activating.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:60 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:60 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:60 now processing 0 total clusters:60 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:60 now processing 0 total clusters:60 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:60 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:60 now processing 0 total clusters:60 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:60 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:53 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:51 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:62 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:70 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:68 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:69 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:61 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:69 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:72 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:44 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092746%7Cgb%7CEFC46387%2E1%7C.for.1013-5621.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.1013-5621.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.1013-5621.gi%7C284092746%7Cgb%7CEFC46387%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083683%7Cgb%7CEFC37384%2E1%7C.for.5064-6702.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.5064-6702.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.5064-6702.gi%7C284083683%7Cgb%7CEFC37384%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088407%7Cgb%7CEFC42071%2E1%7C.for.8543-10559.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.8543-10559.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.8543-10559.gi%7C284088407%7Cgb%7CEFC42071%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085812%7Cgb%7CEFC39493%2E1%7C.for.9874-11247.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11247.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11247.gi%7C284085812%7Cgb%7CEFC39493%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090220%7Cgb%7CEFC43873%2E1%7C.for.9862-11235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9862-11235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9862-11235.gi%7C284090220%7Cgb%7CEFC43873%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095573%7Cgb%7CEFC49203%2E1%7C.for.9877-11238.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9877-11238.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9877-11238.gi%7C284095573%7Cgb%7CEFC49203%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083905%7Cgb%7CEFC37603%2E1%7C.for.9853-11214.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9853-11214.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9853-11214.gi%7C284083905%7Cgb%7CEFC37603%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092862%7Cgb%7CEFC46502%2E1%7C.for.9874-11241.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11241.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11241.gi%7C284092862%7Cgb%7CEFC46502%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089636%7Cgb%7CEFC43292%2E1%7C.for.9874-11250.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11250.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11250.gi%7C284089636%7Cgb%7CEFC43292%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081627%7Cgb%7CEFC35562%2E1%7C.for.9874-10892.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-10892.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-10892.gi%7C284081627%7Cgb%7CEFC35562%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093011%7Cgb%7CEFC46651%2E1%7C.for.9877-11235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9877-11235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9877-11235.gi%7C284093011%7Cgb%7CEFC46651%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090598%7Cgb%7CEFC44249%2E1%7C.for.9868-11235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9868-11235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9868-11235.gi%7C284090598%7Cgb%7CEFC44249%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093381%7Cgb%7CEFC47019%2E1%7C.for.9865-11244.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9865-11244.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9865-11244.gi%7C284093381%7Cgb%7CEFC47019%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087750%7Cgb%7CEFC41418%2E1%7C.for.9874-11241.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11241.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11241.gi%7C284087750%7Cgb%7CEFC41418%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097171%7Cgb%7CEFC50798%2E1%7C.for.9955-11235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9955-11235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9955-11235.gi%7C284097171%7Cgb%7CEFC50798%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084253%7Cgb%7CEFC37948%2E1%7C.for.9874-11247.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11247.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11247.gi%7C284084253%7Cgb%7CEFC37948%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082060%7Cgb%7CEFC35846%2E1%7C.for.9874-11082.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11082.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11082.gi%7C284082060%7Cgb%7CEFC35846%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089921%7Cgb%7CEFC43576%2E1%7C.for.10142-11211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.10142-11211.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.10142-11211.gi%7C284089921%7Cgb%7CEFC43576%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081289%7Cgb%7CEFC35375%2E1%7C.for.9874-11247.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11247.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11247.gi%7C284081289%7Cgb%7CEFC35375%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087888%7Cgb%7CEFC41555%2E1%7C.for.9868-11307.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9868-11307.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9868-11307.gi%7C284087888%7Cgb%7CEFC41555%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090604%7Cgb%7CEFC44255%2E1%7C.for.9874-11235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11235.gi%7C284090604%7Cgb%7CEFC44255%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093718%7Cgb%7CEFC47355%2E1%7C.for.9868-11235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9868-11235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9868-11235.gi%7C284093718%7Cgb%7CEFC47355%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092603%7Cgb%7CEFC46244%2E1%7C.for.9952-11253.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9952-11253.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9952-11253.gi%7C284092603%7Cgb%7CEFC46244%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095901%7Cgb%7CEFC49530%2E1%7C.for.15309-17452.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.15309-17452.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.15309-17452.gi%7C284095901%7Cgb%7CEFC49530%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.for.18476-19500.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18476-19500.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18476-19500.gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083993%7Cgb%7CEFC37690%2E1%7C.for.18125-19958.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18125-19958.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18125-19958.gi%7C284083993%7Cgb%7CEFC37690%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094055%7Cgb%7CEFC47690%2E1%7C.for.18263-19883.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18263-19883.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18263-19883.gi%7C284094055%7Cgb%7CEFC47690%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090579%7Cgb%7CEFC44230%2E1%7C.for.18263-19865.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18263-19865.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18263-19865.gi%7C284090579%7Cgb%7CEFC44230%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081402%7Cgb%7CEFC35430%2E1%7C.for.18428-19476.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18428-19476.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18428-19476.gi%7C284081402%7Cgb%7CEFC35430%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090447%7Cgb%7CEFC44099%2E1%7C.for.18257-19922.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18257-19922.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18257-19922.gi%7C284090447%7Cgb%7CEFC44099%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092196%7Cgb%7CEFC45839%2E1%7C.for.18269-19883.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18269-19883.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18269-19883.gi%7C284092196%7Cgb%7CEFC45839%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089069%7Cgb%7CEFC42729%2E1%7C.for.18263-19922.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18263-19922.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18263-19922.gi%7C284089069%7Cgb%7CEFC42729%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090909%7Cgb%7CEFC44558%2E1%7C.for.18458-19509.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18458-19509.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18458-19509.gi%7C284090909%7Cgb%7CEFC44558%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089047%7Cgb%7CEFC42707%2E1%7C.for.18263-19919.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18263-19919.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18263-19919.gi%7C284089047%7Cgb%7CEFC42707%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083998%7Cgb%7CEFC37695%2E1%7C.for.18269-19865.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18269-19865.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18269-19865.gi%7C284083998%7Cgb%7CEFC37695%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090070%7Cgb%7CEFC43724%2E1%7C.for.18380-19865.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18380-19865.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18380-19865.gi%7C284090070%7Cgb%7CEFC43724%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093175%7Cgb%7CEFC46814%2E1%7C.for.21409-23737.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.21409-23737.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.21409-23737.gi%7C284093175%7Cgb%7CEFC46814%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091296%7Cgb%7CEFC44943%2E1%7C.for.29978-31002.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.29978-31002.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.29978-31002.gi%7C284091296%7Cgb%7CEFC44943%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094539%7Cgb%7CEFC48173%2E1%7C.for.32411-34593.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.32411-34593.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.32411-34593.gi%7C284094539%7Cgb%7CEFC48173%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082502%7Cgb%7CEFC36219%2E1%7C.for.34706-36121.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.34706-36121.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.34706-36121.gi%7C284082502%7Cgb%7CEFC36219%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085459%7Cgb%7CEFC39143%2E1%7C.for.35447-37131.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.35447-37131.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.35447-37131.gi%7C284085459%7Cgb%7CEFC39143%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086511%7Cgb%7CEFC40187%2E1%7C.for.39688-41618.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.39688-41618.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.39688-41618.gi%7C284086511%7Cgb%7CEFC40187%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091530%7Cgb%7CEFC45176%2E1%7C.for.39691-41822.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.39691-41822.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.39691-41822.gi%7C284091530%7Cgb%7CEFC45176%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083230%7Cgb%7CEFC36935%2E1%7C.for.39673-41822.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.39673-41822.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.39673-41822.gi%7C284083230%7Cgb%7CEFC36935%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089725%7Cgb%7CEFC43381%2E1%7C.for.49693-51284.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.49693-51284.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.49693-51284.gi%7C284089725%7Cgb%7CEFC43381%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097201%7Cgb%7CEFC50828%2E1%7C.for.52586-53864.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.52586-53864.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.52586-53864.gi%7C284097201%7Cgb%7CEFC50828%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081386%7Cgb%7CEFC35420%2E1%7C.for.55094-56238.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55094-56238.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55094-56238.gi%7C284081386%7Cgb%7CEFC35420%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097061%7Cgb%7CEFC50688%2E1%7C.for.55097-56157.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55097-56157.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55097-56157.gi%7C284097061%7Cgb%7CEFC50688%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095747%7Cgb%7CEFC49377%2E1%7C.for.55097-56211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55097-56211.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55097-56211.gi%7C284095747%7Cgb%7CEFC49377%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088080%7Cgb%7CEFC41746%2E1%7C.for.55097-56232.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55097-56232.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55097-56232.gi%7C284088080%7Cgb%7CEFC41746%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092504%7Cgb%7CEFC46146%2E1%7C.for.55103-56157.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55103-56157.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55103-56157.gi%7C284092504%7Cgb%7CEFC46146%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090684%7Cgb%7CEFC44334%2E1%7C.for.55094-56238.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55094-56238.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55094-56238.gi%7C284090684%7Cgb%7CEFC44334%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087392%7Cgb%7CEFC41062%2E1%7C.for.58401-60770.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.58401-60770.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.58401-60770.gi%7C284087392%7Cgb%7CEFC41062%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089364%7Cgb%7CEFC43022%2E1%7C.for.60972-62488.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.60972-62488.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.60972-62488.gi%7C284089364%7Cgb%7CEFC43022%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081650%7Cgb%7CEFC35573%2E1%7C.for.62355-63987.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.62355-63987.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.62355-63987.gi%7C284081650%7Cgb%7CEFC35573%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091868%7Cgb%7CEFC45513%2E1%7C.for.62271-63430.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.62271-63430.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.62271-63430.gi%7C284091868%7Cgb%7CEFC45513%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082307%7Cgb%7CEFC36042%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284082307%7Cgb%7CEFC36042%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093856%7Cgb%7CEFC47492%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284093856%7Cgb%7CEFC47492%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085911%7Cgb%7CEFC39591%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284085911%7Cgb%7CEFC39591%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085981%7Cgb%7CEFC39661%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284085981%7Cgb%7CEFC39661%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087491%7Cgb%7CEFC41160%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284087491%7Cgb%7CEFC41160%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093843%7Cgb%7CEFC47479%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284093843%7Cgb%7CEFC47479%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095026%7Cgb%7CEFC48658%2E1%7C.for.71509-72458.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72458.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72458.gi%7C284095026%7Cgb%7CEFC48658%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090245%7Cgb%7CEFC43898%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284090245%7Cgb%7CEFC43898%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087527%7Cgb%7CEFC41196%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284087527%7Cgb%7CEFC41196%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083958%7Cgb%7CEFC37656%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284083958%7Cgb%7CEFC37656%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095626%7Cgb%7CEFC49256%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284095626%7Cgb%7CEFC49256%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089356%7Cgb%7CEFC43014%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284089356%7Cgb%7CEFC43014%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085878%7Cgb%7CEFC39558%2E1%7C.for.78714-80903.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.78714-80903.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.78714-80903.gi%7C284085878%7Cgb%7CEFC39558%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093226%7Cgb%7CEFC46865%2E1%7C.for.80969-83266.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.80969-83266.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.80969-83266.gi%7C284093226%7Cgb%7CEFC46865%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091245%7Cgb%7CEFC44893%2E1%7C.for.82819-84356.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.82819-84356.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.82819-84356.gi%7C284091245%7Cgb%7CEFC44893%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C11466181%7Cref%7CNP_066504%2E1%7C.for.104625-105715.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.104625-105715.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.104625-105715.gi%7C11466181%7Cref%7CNP_066504%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C10444216%7Cgb%7CAAG17782%2E1%7CAF288092_7.for.104625-105715.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.104625-105715.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.104625-105715.gi%7C10444216%7Cgb%7CAAG17782%2E1%7CAF288092_7.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096956%7Cgb%7CEFC50583%2E1%7C.for.104946-106012.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.104946-106012.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.104946-106012.gi%7C284096956%7Cgb%7CEFC50583%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084495%7Cgb%7CEFC38187%2E1%7C.for.117674-118960.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.117674-118960.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.117674-118960.gi%7C284084495%7Cgb%7CEFC38187%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088316%7Cgb%7CEFC41980%2E1%7C.for.124126-128091.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.124126-128091.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.124126-128091.gi%7C284088316%7Cgb%7CEFC41980%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:20 now processing 0 ...processing 0 of 18 ...processing 1 of 18 ...processing 2 of 18 ...processing 3 of 18 ...processing 4 of 18 ...processing 5 of 18 ...processing 6 of 18 ...processing 7 of 18 ...processing 8 of 18 ...processing 9 of 18 ...processing 10 of 18 ...processing 11 of 18 ...processing 12 of 18 ...processing 13 of 18 ...processing 14 of 18 ...processing 15 of 18 ...processing 16 of 18 ...processing 17 of 18 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:20 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:20 now processing 0 ...processing 0 of 12 ...processing 1 of 12 ...processing 2 of 12 ...processing 3 of 12 ...processing 4 of 12 ...processing 5 of 12 ...processing 6 of 12 ...processing 7 of 12 ...processing 8 of 12 ...processing 9 of 12 ...processing 10 of 12 ...processing 11 of 12 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:12 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 12 ...processing 1 of 12 ...processing 2 of 12 ...processing 3 of 12 ...processing 4 of 12 ...processing 5 of 12 ...processing 6 of 12 ...processing 7 of 12 ...processing 8 of 12 ...processing 9 of 12 ...processing 10 of 12 ...processing 11 of 12 total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:12 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 10 ...processing 1 of 10 ...processing 2 of 10 ...processing 3 of 10 ...processing 4 of 10 ...processing 5 of 10 ...processing 6 of 10 ...processing 7 of 10 ...processing 8 of 10 ...processing 9 of 10 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:24 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:24 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:24 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:24 now processing 0 total clusters:24 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:24 now processing 0 total clusters:24 now processing 0 total clusters:24 now processing 0 total clusters:24 now processing 0 total clusters:24 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:24 now processing 0 total clusters:24 now processing 0 total clusters:24 now processing 0 total clusters:24 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:24 now processing 0 total clusters:24 now processing 0 total clusters:24 now processing 0 total clusters:24 now processing 0 total clusters:24 now processing 0 total clusters:24 now processing 0 total clusters:24 now processing 0 total clusters:24 now processing 0 total clusters:24 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:24 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.7728-8620.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.7728-8620.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.7728-8620.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.10049-13027.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.10049-13027.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.10049-13027.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.15458-18087.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.15458-18087.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.15458-18087.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.21608-23537.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.21608-23537.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.21608-23537.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.26197-27427.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.26197-27427.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.26197-27427.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.29461-32968.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.29461-32968.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.29461-32968.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.36922-37878.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.36922-37878.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.36922-37878.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.39872-42249.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.39872-42249.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.39872-42249.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.42782-43887.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.42782-43887.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.42782-43887.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.46614-47318.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.46614-47318.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.46614-47318.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.48812-50286.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.48812-50286.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.48812-50286.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.51095-52858.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.51095-52858.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.51095-52858.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.53539-54804.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.53539-54804.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.53539-54804.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.57492-58310.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.57492-58310.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.57492-58310.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.60645-61220.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.60645-61220.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.60645-61220.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.62470-63787.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.62470-63787.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.62470-63787.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.71310-72258.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.71310-72258.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.71310-72258.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.74962-76795.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.74962-76795.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.74962-76795.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.78518-80070.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.78518-80070.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.78518-80070.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.81168-83182.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.81168-83182.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.81168-83182.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.86279-89319.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.86279-89319.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.86279-89319.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.89946-92194.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.89946-92194.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.89946-92194.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.101732-105584.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.101732-105584.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.101732-105584.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.108814-109726.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.108814-109726.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.108814-109726.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.110146-111262.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.110146-111262.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.110146-111262.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.116127-117288.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.116127-117288.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.116127-117288.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.118717-119974.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.118717-119974.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.118717-119974.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.120552-121441.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.120552-121441.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.120552-121441.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.123067-127891.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.123067-127891.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.123067-127891.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.1198-5475.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.1198-5475.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.1198-5475.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.8742-10359.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.8742-10359.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.8742-10359.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.18324-19758.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.18324-19758.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.18324-19758.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.23392-24257.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.23392-24257.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.23392-24257.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.33498-36931.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.33498-36931.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.33498-36931.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.49892-51242.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.49892-51242.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.49892-51242.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.52785-53664.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.52785-53664.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.52785-53664.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.54441-56032.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.54441-56032.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.54441-56032.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.58565-60570.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.58565-60570.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.58565-60570.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.61171-62288.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.61171-62288.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.61171-62288.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.76614-77660.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.76614-77660.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.76614-77660.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/40_0.82904-85103.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/40_0.82904-85103.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/40_0.82904-85103.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/41_0.93385-94287.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/41_0.93385-94287.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/41_0.93385-94287.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/42_0.94429-96907.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/42_0.94429-96907.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/42_0.94429-96907.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/43_0.105145-108236.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/43_0.105145-108236.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/43_0.105145-108236.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/44_0.113479-115436.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/44_0.113479-115436.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/44_0.113479-115436.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/45_0.121122-122453.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/45_0.121122-122453.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/45_0.121122-122453.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C6 Length: 122113 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:3 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:3 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:2 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:2 current j:0 j_size:2 current j:1 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C6.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C6.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9097%7Cendothelin-converting.for.123-1393.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.123-1393.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.123-1393.Ar_EST_120301b_c9097%7Cendothelin-converting.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1238%7Cchromosome.for.803-3026.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.803-3026.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.803-3026.Ar_EST_120301b_c1238%7Cchromosome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c561%7Chypothetical.for.2254-3973.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.2254-3973.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.2254-3973.Ar_EST_120301b_c561%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7092%7Chypothetical.for.2313-3425.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.2313-3425.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.2313-3425.Ar_EST_120301b_rep_c7092%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8999%7C---NA---.for.7519-9225.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.7519-9225.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.7519-9225.Ar_EST_120301b_c8999%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13174%7Cadp-ribosylation.for.15703-16832.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.15703-16832.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.15703-16832.Ar_EST_120301b_rep_c13174%7Cadp-ribosylation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1689%7Cvacuolar.for.15336-16737.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.15336-16737.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.15336-16737.Ar_EST_120301b_c1689%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9681%7Cvacuolar.for.15970-17826.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.15970-17826.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.15970-17826.Ar_EST_120301b_c9681%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14346%7Cvacuolar.for.17201-18217.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.17201-18217.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.17201-18217.Ar_EST_120301b_c14346%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3137%7Cdelta-1-pyrroline-5-carboxylate.for.19234-20841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.19234-20841.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.19234-20841.Ar_EST_120301b_c3137%7Cdelta-1-pyrroline-5-carboxylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18750%7Cdelta-1-pyrroline-5-carboxylate.for.19121-20728.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.19121-20728.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.19121-20728.Ar_EST_120301b_c18750%7Cdelta-1-pyrroline-5-carboxylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2477%7Cdelta-1-pyrroline-5-carboxylate.for.18215-20376.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.18215-20376.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.18215-20376.Ar_EST_120301b_c2477%7Cdelta-1-pyrroline-5-carboxylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19978%7Cdihydrolipoamide.for.21846-23160.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.21846-23160.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.21846-23160.Ar_EST_120301b_c19978%7Cdihydrolipoamide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig128%7Cdihydrolipoamide.for.20387-22977.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.20387-22977.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.20387-22977.120301b_Contig128%7Cdihydrolipoamide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8416%7Ctwo-component.for.22663-23931.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.22663-23931.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.22663-23931.Ar_EST_120301b_c8416%7Ctwo-component.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1919%7Csurface.for.24471-26129.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.24471-26129.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.24471-26129.Ar_EST_120301b_c1919%7Csurface.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17688%7Calpha-galactosidase.for.26917-28272.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.26917-28272.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.26917-28272.Ar_EST_120301b_c17688%7Calpha-galactosidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2981%7Cras.for.37609-39072.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.37609-39072.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.37609-39072.Ar_EST_120301b_c2981%7Cras.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11131%7Cras.for.36977-38575.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.36977-38575.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.36977-38575.Ar_EST_120301b_c11131%7Cras.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3153%7Cras.for.36079-37994.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.36079-37994.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.36079-37994.Ar_EST_120301b_c3153%7Cras.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2631%7Crasgef.for.38082-39579.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.38082-39579.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.38082-39579.Ar_EST_120301b_c2631%7Crasgef.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11259%7Chypothetical.for.39486-40750.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.39486-40750.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.39486-40750.Ar_EST_120301b_c11259%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14312%7Cmitochondrial.for.41003-42418.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.41003-42418.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.41003-42418.Ar_EST_120301b_c14312%7Cmitochondrial.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18904%7Cembryof101113a3.for.42698-44071.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.42698-44071.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.42698-44071.Ar_EST_120301b_rep_c18904%7Cembryof101113a3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16334%7Ccazo.for.45899-46844.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45899-46844.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45899-46844.Ar_EST_120301b_rep_c16334%7Ccazo.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig486%7Cmitochondrial.for.45155-47138.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45155-47138.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45155-47138.120301b_Contig486%7Cmitochondrial.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19473%7Ctrans-2-enoyl-.for.45838-46890.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45838-46890.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45838-46890.Ar_EST_120301b_c19473%7Ctrans-2-enoyl-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19766%7Ctrans-2-enoyl-.for.45298-46431.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45298-46431.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45298-46431.Ar_EST_120301b_rep_c19766%7Ctrans-2-enoyl-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13758%7Csuperoxide.for.46353-47705.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.46353-47705.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.46353-47705.Ar_EST_120301b_c13758%7Csuperoxide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15340%7C---NA---.for.48138-49353.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.48138-49353.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.48138-49353.Ar_EST_120301b_c15340%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12253%7Ccell.for.50027-51427.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.50027-51427.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.50027-51427.Ar_EST_120301b_c12253%7Ccell.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3614%7Ctryptophan.for.51706-53464.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.51706-53464.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.51706-53464.Ar_EST_120301b_c3614%7Ctryptophan.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3246%7Cbp441934.for.53432-54894.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.53432-54894.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.53432-54894.Ar_EST_120301b_c3246%7Cbp441934.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1844%7Cprotein.for.53045-54578.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.53045-54578.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.53045-54578.Ar_EST_120301b_c1844%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13342%7C---NA---.for.54901-55868.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.54901-55868.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.54901-55868.Ar_EST_120301b_c13342%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17156%7Ckiaa1052.for.55079-56460.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.55079-56460.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.55079-56460.Ar_EST_120301b_c17156%7Ckiaa1052.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12715%7Cfq318461.for.62217-63618.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.62217-63618.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.62217-63618.Ar_EST_120301b_c12715%7Cfq318461.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15940%7Cconserved.for.63630-65002.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.63630-65002.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.63630-65002.Ar_EST_120301b_c15940%7Cconserved.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1362%7C---NA---.for.64492-65876.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.64492-65876.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.64492-65876.Ar_EST_120301b_c1362%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15949%7C---NA---.for.68482-69658.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.68482-69658.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.68482-69658.Ar_EST_120301b_rep_c15949%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2106%7Cklhrrc001_12-e02.for.68183-69812.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.68183-69812.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.68183-69812.Ar_EST_120301b_c2106%7Cklhrrc001_12-e02.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15340%7C---NA---.for.73015-74155.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.73015-74155.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.73015-74155.Ar_EST_120301b_c15340%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20087%7Cprag-.for.74208-75368.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.74208-75368.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.74208-75368.Ar_EST_120301b_rep_c20087%7Cprag-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4808%7Cprag-.for.74191-75388.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.74191-75388.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.74191-75388.Ar_EST_120301b_rep_c4808%7Cprag-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8841%7Cag2_p7_l13_m13r.for.79972-81811.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.79972-81811.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.79972-81811.Ar_EST_120301b_c8841%7Cag2_p7_l13_m13r.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4471%7Cshort-chain.for.81454-83106.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.81454-83106.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.81454-83106.Ar_EST_120301b_rep_c4471%7Cshort-chain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5840%7Cshort-chain.for.81555-83050.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.81555-83050.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.81555-83050.Ar_EST_120301b_rep_c5840%7Cshort-chain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10307%7Cshort-chain.for.81484-82721.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.81484-82721.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.81484-82721.Ar_EST_120301b_rep_c10307%7Cshort-chain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig656%7Carmadillo.for.91033-93810.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.91033-93810.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.91033-93810.120301b_Contig656%7Carmadillo.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7896%7Cprotein.for.93047-95284.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.93047-95284.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.93047-95284.Ar_EST_120301b_c7896%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14083%7Chypothetical.for.97265-98467.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.97265-98467.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.97265-98467.Ar_EST_120301b_c14083%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14686%7Chypothetical.for.97297-98350.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.97297-98350.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.97297-98350.Ar_EST_120301b_c14686%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2116%7Chat.for.97324-98663.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.97324-98663.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.97324-98663.Ar_EST_120301b_c2116%7Chat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15340%7C---NA---.for.98833-100062.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.98833-100062.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.98833-100062.Ar_EST_120301b_c15340%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4652%7Catp-dependent.for.99963-102250.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.99963-102250.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.99963-102250.Ar_EST_120301b_rep_c4652%7Catp-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14242%7Catp.for.100109-101104.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.100109-101104.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.100109-101104.Ar_EST_120301b_c14242%7Catp.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12029%7Cpirin-related.for.102587-103992.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.102587-103992.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.102587-103992.Ar_EST_120301b_c12029%7Cpirin-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8398%7Cnadh.for.103646-104832.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.103646-104832.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.103646-104832.Ar_EST_120301b_rep_c8398%7Cnadh.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c775%7Cnadh.for.103680-104925.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.103680-104925.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.103680-104925.Ar_EST_120301b_c775%7Cnadh.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16811%7Cprotein.for.104900-106748.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.104900-106748.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.104900-106748.Ar_EST_120301b_c16811%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig532%7Cdnaj.for.108502-110436.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108502-110436.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108502-110436.120301b_Contig532%7Cdnaj.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5627%7Cdnaj.for.108299-110431.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108299-110431.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108299-110431.Ar_EST_120301b_rep_c5627%7Cdnaj.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6751%7Cdnaj.for.108406-110044.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108406-110044.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108406-110044.Ar_EST_120301b_rep_c6751%7Cdnaj.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19114%7Cccih.for.110438-111717.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.110438-111717.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.110438-111717.Ar_EST_120301b_c19114%7Cccih.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8278%7Ccomplex.for.110596-111614.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.110596-111614.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.110596-111614.Ar_EST_120301b_c8278%7Ccomplex.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16738%7Cprotein.for.111320-112663.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.111320-112663.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.111320-112663.Ar_EST_120301b_c16738%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4485%7Clate.for.121338-122113.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.121338-122113.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.121338-122113.Ar_EST_120301b_rep_c4485%7Clate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6023%7Chypothetical.for.121423-122113.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.121423-122113.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.121423-122113.Ar_EST_120301b_rep_c6023%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12513%7Cantifreeze.for.121306-122113.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.121306-122113.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.121306-122113.Ar_EST_120301b_rep_c12513%7Cantifreeze.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:71 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:53 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:58 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:78 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:59 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:72 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:67 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:66 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:50 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088158%7Cgb%7CEFC41823%2E1%7C.for.2365-4055.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.2365-4055.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.2365-4055.gi%7C284088158%7Cgb%7CEFC41823%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088143%7Cgb%7CEFC41808%2E1%7C.for.3371-6960.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.3371-6960.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.3371-6960.gi%7C284088143%7Cgb%7CEFC41808%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088065%7Cgb%7CEFC41731%2E1%7C.for.15266-18233.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.15266-18233.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.15266-18233.gi%7C284088065%7Cgb%7CEFC41731%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088066%7Cgb%7CEFC41732%2E1%7C.for.17441-18522.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.17441-18522.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.17441-18522.gi%7C284088066%7Cgb%7CEFC41732%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092276%7Cgb%7CEFC45919%2E1%7C.for.18360-20850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.18360-20850.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.18360-20850.gi%7C284092276%7Cgb%7CEFC45919%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094295%7Cgb%7CEFC47929%2E1%7C.for.20588-23148.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.20588-23148.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.20588-23148.gi%7C284094295%7Cgb%7CEFC47929%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094355%7Cgb%7CEFC47989%2E1%7C.for.20627-22068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.20627-22068.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.20627-22068.gi%7C284094355%7Cgb%7CEFC47989%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094493%7Cgb%7CEFC48127%2E1%7C.for.20579-23154.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.20579-23154.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.20579-23154.gi%7C284094493%7Cgb%7CEFC48127%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084633%7Cgb%7CEFC38324%2E1%7C.for.36113-38819.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.36113-38819.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.36113-38819.gi%7C284084633%7Cgb%7CEFC38324%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097160%7Cgb%7CEFC50787%2E1%7C.for.41048-43365.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.41048-43365.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.41048-43365.gi%7C284097160%7Cgb%7CEFC50787%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083887%7Cgb%7CEFC37585%2E1%7C.for.43995-45841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.43995-45841.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.43995-45841.gi%7C284083887%7Cgb%7CEFC37585%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088044%7Cgb%7CEFC41710%2E1%7C.for.45165-46912.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45165-46912.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45165-46912.gi%7C284088044%7Cgb%7CEFC41710%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083596%7Cgb%7CEFC37298%2E1%7C.for.46621-48068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.46621-48068.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.46621-48068.gi%7C284083596%7Cgb%7CEFC37298%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083542%7Cgb%7CEFC37244%2E1%7C.for.46621-48068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.46621-48068.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.46621-48068.gi%7C284083542%7Cgb%7CEFC37244%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085466%7Cgb%7CEFC39150%2E1%7C.for.51890-53804.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.51890-53804.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.51890-53804.gi%7C284085466%7Cgb%7CEFC39150%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088022%7Cgb%7CEFC41688%2E1%7C.for.55217-58498.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.55217-58498.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.55217-58498.gi%7C284088022%7Cgb%7CEFC41688%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094068%7Cgb%7CEFC47703%2E1%7C.for.57841-59500.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57841-59500.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57841-59500.gi%7C284094068%7Cgb%7CEFC47703%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093385%7Cgb%7CEFC47023%2E1%7C.for.58206-59248.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58206-59248.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58206-59248.gi%7C284093385%7Cgb%7CEFC47023%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091587%7Cgb%7CEFC45233%2E1%7C.for.58254-59266.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58254-59266.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58254-59266.gi%7C284091587%7Cgb%7CEFC45233%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093143%7Cgb%7CEFC46782%2E1%7C.for.57859-59518.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57859-59518.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57859-59518.gi%7C284093143%7Cgb%7CEFC46782%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085317%7Cgb%7CEFC39002%2E1%7C.for.58215-59287.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58215-59287.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58215-59287.gi%7C284085317%7Cgb%7CEFC39002%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.for.58239-59248.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58239-59248.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58239-59248.gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094136%7Cgb%7CEFC47771%2E1%7C.for.58200-59290.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58200-59290.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58200-59290.gi%7C284094136%7Cgb%7CEFC47771%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089231%7Cgb%7CEFC42890%2E1%7C.for.57859-59515.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57859-59515.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57859-59515.gi%7C284089231%7Cgb%7CEFC42890%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083993%7Cgb%7CEFC37690%2E1%7C.for.57853-59518.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57853-59518.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57853-59518.gi%7C284083993%7Cgb%7CEFC37690%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092366%7Cgb%7CEFC46008%2E1%7C.for.57856-59488.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57856-59488.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57856-59488.gi%7C284092366%7Cgb%7CEFC46008%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094875%7Cgb%7CEFC48508%2E1%7C.for.57856-59518.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57856-59518.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57856-59518.gi%7C284094875%7Cgb%7CEFC48508%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094163%7Cgb%7CEFC47798%2E1%7C.for.58227-59203.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58227-59203.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58227-59203.gi%7C284094163%7Cgb%7CEFC47798%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085986%7Cgb%7CEFC39666%2E1%7C.for.57838-59518.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57838-59518.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57838-59518.gi%7C284085986%7Cgb%7CEFC39666%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094832%7Cgb%7CEFC48465%2E1%7C.for.57856-59599.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57856-59599.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57856-59599.gi%7C284094832%7Cgb%7CEFC48465%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088361%7Cgb%7CEFC42025%2E1%7C.for.57841-59518.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57841-59518.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57841-59518.gi%7C284088361%7Cgb%7CEFC42025%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097221%7Cgb%7CEFC50848%2E1%7C.for.60697-61847.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.60697-61847.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.60697-61847.gi%7C284097221%7Cgb%7CEFC50848%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094035%7Cgb%7CEFC47670%2E1%7C.for.67414-68339.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.67414-68339.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.67414-68339.gi%7C284094035%7Cgb%7CEFC47670%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093439%7Cgb%7CEFC47077%2E1%7C.for.67289-68478.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.67289-68478.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.67289-68478.gi%7C284093439%7Cgb%7CEFC47077%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085372%7Cgb%7CEFC39056%2E1%7C.for.73551-74923.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.73551-74923.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.73551-74923.gi%7C284085372%7Cgb%7CEFC39056%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.75922-77087.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77087.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77087.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.for.75925-77141.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77141.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77141.gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.for.75922-77129.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77129.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77129.gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.for.75916-77078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75916-77078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75916-77078.gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.for.75928-77075.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75928-77075.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75928-77075.gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085992%7Cgb%7CEFC39672%2E1%7C.for.75850-77639.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75850-77639.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75850-77639.gi%7C284085992%7Cgb%7CEFC39672%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.for.75925-77453.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77453.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77453.gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.for.75931-77072.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75931-77072.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75931-77072.gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094669%7Cgb%7CEFC48302%2E1%7C.for.75925-77129.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77129.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77129.gi%7C284094669%7Cgb%7CEFC48302%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084257%7Cgb%7CEFC37951%2E1%7C.for.75928-77915.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75928-77915.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75928-77915.gi%7C284084257%7Cgb%7CEFC37951%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.for.75901-77078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75901-77078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75901-77078.gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.for.75892-77078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75892-77078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75892-77078.gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.for.75874-77078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75874-77078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75874-77078.gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090289%7Cgb%7CEFC43941%2E1%7C.for.75877-77117.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75877-77117.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75877-77117.gi%7C284090289%7Cgb%7CEFC43941%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.for.75922-77237.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77237.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77237.gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090138%7Cgb%7CEFC43791%2E1%7C.for.75919-77417.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75919-77417.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75919-77417.gi%7C284090138%7Cgb%7CEFC43791%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.for.75925-77075.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77075.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77075.gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082687%7Cgb%7CEFC36400%2E1%7C.for.75901-77087.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75901-77087.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75901-77087.gi%7C284082687%7Cgb%7CEFC36400%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.for.75922-77087.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77087.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77087.gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093864%7Cgb%7CEFC47500%2E1%7C.for.75916-77162.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75916-77162.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75916-77162.gi%7C284093864%7Cgb%7CEFC47500%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091293%7Cgb%7CEFC44940%2E1%7C.for.75916-77120.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75916-77120.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75916-77120.gi%7C284091293%7Cgb%7CEFC44940%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.for.75925-77108.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77108.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77108.gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097003%7Cgb%7CEFC50630%2E1%7C.for.75883-77078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75883-77078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75883-77078.gi%7C284097003%7Cgb%7CEFC50630%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.for.75835-77141.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75835-77141.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75835-77141.gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.for.75880-77120.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75880-77120.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75880-77120.gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.for.75925-77129.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77129.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77129.gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086956%7Cgb%7CEFC40629%2E1%7C.for.75817-77225.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75817-77225.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75817-77225.gi%7C284086956%7Cgb%7CEFC40629%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090146%7Cgb%7CEFC43799%2E1%7C.for.75817-77162.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75817-77162.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75817-77162.gi%7C284090146%7Cgb%7CEFC43799%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082747%7Cgb%7CEFC36459%2E1%7C.for.75907-77084.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75907-77084.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75907-77084.gi%7C284082747%7Cgb%7CEFC36459%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097002%7Cgb%7CEFC50629%2E1%7C.for.75907-77108.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75907-77108.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75907-77108.gi%7C284097002%7Cgb%7CEFC50629%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.for.75922-77195.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77195.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77195.gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.for.75745-77108.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75745-77108.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75745-77108.gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.for.75835-77150.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75835-77150.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75835-77150.gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.for.75922-77126.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77126.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77126.gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087408%7Cgb%7CEFC41078%2E1%7C.for.75922-77078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77078.gi%7C284087408%7Cgb%7CEFC41078%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.for.75919-77162.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75919-77162.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75919-77162.gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.for.75913-77195.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75913-77195.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75913-77195.gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.for.75922-77135.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77135.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77135.gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.for.76000-77069.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.76000-77069.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.76000-77069.gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092204%7Cgb%7CEFC45847%2E1%7C.for.75856-77078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75856-77078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75856-77078.gi%7C284092204%7Cgb%7CEFC45847%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090154%7Cgb%7CEFC43807%2E1%7C.for.75817-77147.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75817-77147.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75817-77147.gi%7C284090154%7Cgb%7CEFC43807%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.for.75928-77132.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75928-77132.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75928-77132.gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082694%7Cgb%7CEFC36407%2E1%7C.for.75922-77162.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77162.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77162.gi%7C284082694%7Cgb%7CEFC36407%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.for.75574-77138.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75574-77138.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75574-77138.gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090243%7Cgb%7CEFC43896%2E1%7C.for.75895-77156.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75895-77156.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75895-77156.gi%7C284090243%7Cgb%7CEFC43896%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085724%7Cgb%7CEFC39406%2E1%7C.for.75922-77267.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77267.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77267.gi%7C284085724%7Cgb%7CEFC39406%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.for.75913-77078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75913-77078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75913-77078.gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092203%7Cgb%7CEFC45846%2E1%7C.for.75925-77102.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77102.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77102.gi%7C284092203%7Cgb%7CEFC45846%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.for.75931-77159.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75931-77159.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75931-77159.gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090143%7Cgb%7CEFC43796%2E1%7C.for.75817-77237.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75817-77237.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75817-77237.gi%7C284090143%7Cgb%7CEFC43796%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.for.75931-77408.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75931-77408.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75931-77408.gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096176%7Cgb%7CEFC49805%2E1%7C.for.75916-77168.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75916-77168.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75916-77168.gi%7C284096176%7Cgb%7CEFC49805%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085350%7Cgb%7CEFC39035%2E1%7C.for.75922-77111.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77111.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77111.gi%7C284085350%7Cgb%7CEFC39035%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087676%7Cgb%7CEFC41344%2E1%7C.for.75685-77141.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75685-77141.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75685-77141.gi%7C284087676%7Cgb%7CEFC41344%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.for.75922-77051.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77051.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77051.gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085335%7Cgb%7CEFC39020%2E1%7C.for.81508-83189.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.81508-83189.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.81508-83189.gi%7C284085335%7Cgb%7CEFC39020%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096729%7Cgb%7CEFC50356%2E1%7C.for.90990-95305.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.90990-95305.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.90990-95305.gi%7C284096729%7Cgb%7CEFC50356%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092459%7Cgb%7CEFC46101%2E1%7C.for.95606-96932.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.95606-96932.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.95606-96932.gi%7C284092459%7Cgb%7CEFC46101%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096805%7Cgb%7CEFC50432%2E1%7C.for.100142-102232.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.100142-102232.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.100142-102232.gi%7C284096805%7Cgb%7CEFC50432%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082010%7Cgb%7CEFC35809%2E1%7C.for.100359-101497.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.100359-101497.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.100359-101497.gi%7C284082010%7Cgb%7CEFC35809%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089472%7Cgb%7CEFC43129%2E1%7C.for.102769-104123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.102769-104123.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.102769-104123.gi%7C284089472%7Cgb%7CEFC43129%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086520%7Cgb%7CEFC40196%2E1%7C.for.102769-104123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.102769-104123.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.102769-104123.gi%7C284086520%7Cgb%7CEFC40196%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091621%7Cgb%7CEFC45267%2E1%7C.for.103802-104936.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.103802-104936.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.103802-104936.gi%7C284091621%7Cgb%7CEFC45267%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087655%7Cgb%7CEFC41323%2E1%7C.for.108344-109338.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108344-109338.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108344-109338.gi%7C284087655%7Cgb%7CEFC41323%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094750%7Cgb%7CEFC48383%2E1%7C.for.108338-109371.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108338-109371.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108338-109371.gi%7C284094750%7Cgb%7CEFC48383%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096189%7Cgb%7CEFC49818%2E1%7C.for.108344-109335.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108344-109335.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108344-109335.gi%7C284096189%7Cgb%7CEFC49818%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087657%7Cgb%7CEFC41325%2E1%7C.for.108344-109332.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108344-109332.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108344-109332.gi%7C284087657%7Cgb%7CEFC41325%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097268%7Cgb%7CEFC50895%2E1%7C.for.108329-109263.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108329-109263.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108329-109263.gi%7C284097268%7Cgb%7CEFC50895%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096576%7Cgb%7CEFC50204%2E1%7C.for.108338-110424.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108338-110424.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108338-110424.gi%7C284096576%7Cgb%7CEFC50204%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 10 ...processing 1 of 10 ...processing 2 of 10 ...processing 3 of 10 ...processing 4 of 10 ...processing 5 of 10 ...processing 6 of 10 ...processing 7 of 10 ...processing 8 of 10 ...processing 9 of 10 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:21 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:21 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:21 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.322-3855.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.322-3855.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.322-3855.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.18414-22960.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.18414-22960.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.18414-22960.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.39685-40550.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.39685-40550.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.39685-40550.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.51811-53604.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.51811-53604.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.51811-53604.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.58040-59318.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.58040-59318.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.58040-59318.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.63829-65696.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.63829-65696.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.63829-65696.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.68382-69612.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.68382-69612.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.68382-69612.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.73154-75180.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.73154-75180.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.73154-75180.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.76115-77208.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.76115-77208.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.76115-77208.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.80171-82989.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.80171-82989.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.80171-82989.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.95805-96732.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.95805-96732.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.95805-96732.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.97430-98476.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.97430-98476.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.97430-98476.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.99032-99862.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.99032-99862.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.99032-99862.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.100162-102050.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.100162-102050.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.100162-102050.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.108498-110231.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.108498-110231.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.108498-110231.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.3570-6760.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.3570-6760.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.3570-6760.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.7718-9025.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.7718-9025.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.7718-9025.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.15465-18322.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.15465-18322.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.15465-18322.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.22851-23731.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.22851-23731.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.22851-23731.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.24670-25942.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.24670-25942.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.24670-25942.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.27116-28077.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.27116-28077.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.27116-28077.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.36278-38872.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.36278-38872.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.36278-38872.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.41202-43976.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.41202-43976.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.41202-43976.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.45364-47868.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.45364-47868.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.45364-47868.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.48329-49159.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.48329-49159.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.48329-49159.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.50226-51227.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.50226-51227.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.50226-51227.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.53242-54694.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.53242-54694.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.53242-54694.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.55100-56260.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.55100-56260.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.55100-56260.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.62416-63418.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.62416-63418.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.62416-63418.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.67488-68278.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.67488-68278.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.67488-68278.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.91189-95105.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.91189-95105.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.91189-95105.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.102786-104736.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.102786-104736.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.102786-104736.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.110637-111517.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.110637-111517.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.110637-111517.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.111519-112463.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.111519-112463.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.111519-112463.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C7 Length: 134939 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:55 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:38 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:33 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:53 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:43 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:56 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:37 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:44 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:53 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:40 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:10 current j:0 j_size:10 current j:1 j_size:10 current j:2 j_size:10 current j:3 j_size:10 current j:4 j_size:10 current j:5 j_size:10 current j:6 j_size:10 current j:7 j_size:10 current j:8 j_size:10 current j:9 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C7.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C7.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:13 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:6 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4485%7Clate.for.48-1639.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.48-1639.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.48-1639.Ar_EST_120301b_rep_c4485%7Clate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6023%7Chypothetical.for.133-1450.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.133-1450.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.133-1450.Ar_EST_120301b_rep_c6023%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12513%7Cantifreeze.for.16-1223.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.16-1223.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.16-1223.Ar_EST_120301b_rep_c12513%7Cantifreeze.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5923%7Cubiquitin.for.9-1509.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.9-1509.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.9-1509.Ar_EST_120301b_rep_c5923%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16388%7Crr1bs47tf.for.3291-4350.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.3291-4350.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.3291-4350.Ar_EST_120301b_c16388%7Crr1bs47tf.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11420%7Cc-4.for.12132-13718.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.12132-13718.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.12132-13718.Ar_EST_120301b_rep_c11420%7Cc-4.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6787%7Cc-4.for.11988-13571.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.11988-13571.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.11988-13571.Ar_EST_120301b_rep_c6787%7Cc-4.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11905%7Calpha.for.28565-29972.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.28565-29972.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.28565-29972.Ar_EST_120301b_c11905%7Calpha.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13284%7Cvacuolar.for.41047-42400.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.41047-42400.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.41047-42400.Ar_EST_120301b_c13284%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1689%7Cvacuolar.for.41819-43964.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.41819-43964.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.41819-43964.Ar_EST_120301b_c1689%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10762%7Cvacuolar.for.41624-42922.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.41624-42922.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.41624-42922.Ar_EST_120301b_c10762%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1374%7Cbase.for.45520-46917.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.45520-46917.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.45520-46917.Ar_EST_120301b_c1374%7Cbase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14203%7Cprotein.for.47262-48388.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.47262-48388.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.47262-48388.Ar_EST_120301b_c14203%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9392%7Calpha.for.49898-51378.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.49898-51378.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.49898-51378.Ar_EST_120301b_c9392%7Calpha.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1168%7Cprobable.for.55493-56901.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.55493-56901.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.55493-56901.Ar_EST_120301b_c1168%7Cprobable.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12300%7Cp-type.for.54632-56292.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54632-56292.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54632-56292.Ar_EST_120301b_c12300%7Cp-type.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13768%7Cp-type.for.56376-58077.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.56376-58077.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.56376-58077.Ar_EST_120301b_c13768%7Cp-type.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1093%7Cbiotinidase.for.57625-59775.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.57625-59775.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.57625-59775.120301b_Contig1093%7Cbiotinidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13105%7Cchloride.for.60848-62090.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.60848-62090.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.60848-62090.Ar_EST_120301b_c13105%7Cchloride.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11503%7Cchloride.for.61480-62910.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.61480-62910.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.61480-62910.Ar_EST_120301b_c11503%7Cchloride.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10696%7Cdynein.for.63572-64525.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.63572-64525.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.63572-64525.Ar_EST_120301b_c10696%7Cdynein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14804%7Cbp072254.for.69102-70291.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.69102-70291.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.69102-70291.Ar_EST_120301b_c14804%7Cbp072254.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3050%7Cviral.for.69616-71615.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.69616-71615.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.69616-71615.Ar_EST_120301b_c3050%7Cviral.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1063%7Cpredicted.for.70835-72329.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.70835-72329.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.70835-72329.Ar_EST_120301b_c1063%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2507%7C---NA---.for.71805-73298.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.71805-73298.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.71805-73298.Ar_EST_120301b_c2507%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c217%7Cprotein.for.80145-81818.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.80145-81818.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.80145-81818.Ar_EST_120301b_c217%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9172%7Cprotein.for.81335-83480.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.81335-83480.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.81335-83480.Ar_EST_120301b_c9172%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17870%7Ct-cell.for.89208-90299.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.89208-90299.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.89208-90299.Ar_EST_120301b_c17870%7Ct-cell.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11765%7Csolanesyl.for.92442-93928.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.92442-93928.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.92442-93928.Ar_EST_120301b_c11765%7Csolanesyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2548%7Cprotein-tyrosine.for.96640-97650.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.96640-97650.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.96640-97650.Ar_EST_120301b_c2548%7Cprotein-tyrosine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20445%7Cpyridine.for.97523-98612.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.97523-98612.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.97523-98612.Ar_EST_120301b_rep_c20445%7Cpyridine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c129%7Cnadh.for.97314-99592.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.97314-99592.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.97314-99592.Ar_EST_120301b_c129%7Cnadh.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19430%7Ctim50p.for.99275-100655.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.99275-100655.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.99275-100655.Ar_EST_120301b_c19430%7Ctim50p.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9578%7Ctim50p.for.99070-100422.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.99070-100422.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.99070-100422.Ar_EST_120301b_c9578%7Ctim50p.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3058%7Cprotein.for.100740-102763.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.100740-102763.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.100740-102763.Ar_EST_120301b_c3058%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12267%7Cat3g52930-like.for.102247-103458.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.102247-103458.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.102247-103458.Ar_EST_120301b_c12267%7Cat3g52930-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3718%7Cdienelactone.for.103910-105498.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.103910-105498.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.103910-105498.Ar_EST_120301b_c3718%7Cdienelactone.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20209%7Cribosomal.for.106394-107638.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106394-107638.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106394-107638.Ar_EST_120301b_rep_c20209%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3985%7C40s.for.105944-107655.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.105944-107655.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.105944-107655.Ar_EST_120301b_c3985%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5446%7Cribosomal.for.106398-107634.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106398-107634.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106398-107634.Ar_EST_120301b_rep_c5446%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18562%7C40s.for.106159-107137.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106159-107137.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106159-107137.Ar_EST_120301b_c18562%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6169%7C40s.for.105976-107196.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.105976-107196.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.105976-107196.Ar_EST_120301b_rep_c6169%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4920%7C40s.for.106100-107215.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106100-107215.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106100-107215.Ar_EST_120301b_rep_c4920%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6109%7C40s.for.106031-107257.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106031-107257.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106031-107257.Ar_EST_120301b_rep_c6109%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c785%7C5.for.109154-110971.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.109154-110971.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.109154-110971.Ar_EST_120301b_c785%7C5.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12153%7Cpredicted.for.110571-111898.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.110571-111898.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.110571-111898.Ar_EST_120301b_c12153%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12867%7C---NA---.for.122238-124136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.122238-124136.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.122238-124136.Ar_EST_120301b_c12867%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2650%7Cconserved.for.125607-127233.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.125607-127233.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.125607-127233.Ar_EST_120301b_c2650%7Cconserved.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2689%7Cnitella_74953_lrc40900_c.for.129843-131563.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.129843-131563.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.129843-131563.Ar_EST_120301b_c2689%7Cnitella_74953_lrc40900_c.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9169%7Cring.for.129877-133148.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.129877-133148.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.129877-133148.Ar_EST_120301b_c9169%7Cring.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12191%7Ccls_c.for.129992-133148.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.129992-133148.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.129992-133148.Ar_EST_120301b_c12191%7Ccls_c.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:30 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:30 now processing 0 total clusters:30 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:30 now processing 0 total clusters:30 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:30 now processing 0 total clusters:30 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:30 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:30 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:30 now processing 0 total clusters:30 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:30 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:29 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:42 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:42 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:57 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:48 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:38 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:38 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:47 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:33 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:32 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083691%7Cgb%7CEFC37392%2E1%7C.for.12012-13671.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.12012-13671.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.12012-13671.gi%7C284083691%7Cgb%7CEFC37392%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096883%7Cgb%7CEFC50510%2E1%7C.for.12012-13644.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.12012-13644.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.12012-13644.gi%7C284096883%7Cgb%7CEFC50510%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089652%7Cgb%7CEFC43308%2E1%7C.for.28293-29887.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.28293-29887.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.28293-29887.gi%7C284089652%7Cgb%7CEFC43308%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084087%7Cgb%7CEFC37783%2E1%7C.for.30299-33450.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33450.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33450.gi%7C284084087%7Cgb%7CEFC37783%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082474%7Cgb%7CEFC36192%2E1%7C.for.30299-33114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33114.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33114.gi%7C284082474%7Cgb%7CEFC36192%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082092%7Cgb%7CEFC35872%2E1%7C.for.30299-33114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33114.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33114.gi%7C284082092%7Cgb%7CEFC35872%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085337%7Cgb%7CEFC39022%2E1%7C.for.30350-33114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30350-33114.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30350-33114.gi%7C284085337%7Cgb%7CEFC39022%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083266%7Cgb%7CEFC36971%2E1%7C.for.30299-33114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33114.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33114.gi%7C284083266%7Cgb%7CEFC36971%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083922%7Cgb%7CEFC37620%2E1%7C.for.30440-33144.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30440-33144.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30440-33144.gi%7C284083922%7Cgb%7CEFC37620%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089683%7Cgb%7CEFC43339%2E1%7C.for.30443-33114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30443-33114.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30443-33114.gi%7C284089683%7Cgb%7CEFC43339%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082314%7Cgb%7CEFC36048%2E1%7C.for.30299-33114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33114.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33114.gi%7C284082314%7Cgb%7CEFC36048%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093921%7Cgb%7CEFC47557%2E1%7C.for.30299-33183.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33183.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33183.gi%7C284093921%7Cgb%7CEFC47557%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082806%7Cgb%7CEFC36517%2E1%7C.for.30443-33066.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30443-33066.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30443-33066.gi%7C284082806%7Cgb%7CEFC36517%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082136%7Cgb%7CEFC35906%2E1%7C.for.30299-33183.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33183.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33183.gi%7C284082136%7Cgb%7CEFC35906%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085875%7Cgb%7CEFC39555%2E1%7C.for.30440-33108.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30440-33108.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30440-33108.gi%7C284085875%7Cgb%7CEFC39555%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080810%7Cgb%7CEFC35195%2E1%7C.for.30419-32517.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30419-32517.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30419-32517.gi%7C284080810%7Cgb%7CEFC35195%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090094%7Cgb%7CEFC43748%2E1%7C.for.34017-35008.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.34017-35008.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.34017-35008.gi%7C284090094%7Cgb%7CEFC43748%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088066%7Cgb%7CEFC41732%2E1%7C.for.40616-41691.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.40616-41691.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.40616-41691.gi%7C284088066%7Cgb%7CEFC41732%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088065%7Cgb%7CEFC41731%2E1%7C.for.40911-43775.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.40911-43775.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.40911-43775.gi%7C284088065%7Cgb%7CEFC41731%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089788%7Cgb%7CEFC43443%2E1%7C.for.54064-58018.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54064-58018.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54064-58018.gi%7C284089788%7Cgb%7CEFC43443%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088559%7Cgb%7CEFC42222%2E1%7C.for.54067-57919.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57919.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57919.gi%7C284088559%7Cgb%7CEFC42222%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092821%7Cgb%7CEFC46461%2E1%7C.for.54040-58018.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54040-58018.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54040-58018.gi%7C284092821%7Cgb%7CEFC46461%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083022%7Cgb%7CEFC36730%2E1%7C.for.54067-57955.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57955.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57955.gi%7C284083022%7Cgb%7CEFC36730%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093552%7Cgb%7CEFC47189%2E1%7C.for.54067-57922.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57922.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57922.gi%7C284093552%7Cgb%7CEFC47189%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085695%7Cgb%7CEFC39377%2E1%7C.for.54067-57922.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57922.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57922.gi%7C284085695%7Cgb%7CEFC39377%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085694%7Cgb%7CEFC39376%2E1%7C.for.54067-57922.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57922.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57922.gi%7C284085694%7Cgb%7CEFC39376%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082133%7Cgb%7CEFC35904%2E1%7C.for.56298-57955.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.56298-57955.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.56298-57955.gi%7C284082133%7Cgb%7CEFC35904%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091674%7Cgb%7CEFC45319%2E1%7C.for.65466-67930.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.65466-67930.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.65466-67930.gi%7C284091674%7Cgb%7CEFC45319%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091345%7Cgb%7CEFC44992%2E1%7C.for.67823-69659.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.67823-69659.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.67823-69659.gi%7C284091345%7Cgb%7CEFC44992%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093228%7Cgb%7CEFC46867%2E1%7C.for.67832-69371.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.67832-69371.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.67832-69371.gi%7C284093228%7Cgb%7CEFC46867%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090440%7Cgb%7CEFC44092%2E1%7C.for.81166-83419.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.81166-83419.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.81166-83419.gi%7C284090440%7Cgb%7CEFC44092%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095446%7Cgb%7CEFC49077%2E1%7C.for.81166-83413.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.81166-83413.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.81166-83413.gi%7C284095446%7Cgb%7CEFC49077%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095286%7Cgb%7CEFC48917%2E1%7C.for.81169-83440.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.81169-83440.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.81169-83440.gi%7C284095286%7Cgb%7CEFC48917%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.86027-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89034.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.for.86030-89022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89022.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89022.gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.for.86030-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.for.86033-89028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86033-89028.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86033-89028.gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.for.86027-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89034.gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.for.85979-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.85979-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.85979-89034.gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090673%7Cgb%7CEFC44323%2E1%7C.for.86069-88737.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86069-88737.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86069-88737.gi%7C284090673%7Cgb%7CEFC44323%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094669%7Cgb%7CEFC48302%2E1%7C.for.86030-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.gi%7C284094669%7Cgb%7CEFC48302%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.for.86036-89439.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89439.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89439.gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.for.86012-89022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86012-89022.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86012-89022.gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.for.86030-88998.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-88998.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-88998.gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.for.86027-89037.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89037.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89037.gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.for.86030-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090138%7Cgb%7CEFC43791%2E1%7C.for.86015-89466.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86015-89466.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86015-89466.gi%7C284090138%7Cgb%7CEFC43791%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.for.86027-89064.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89064.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89064.gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.for.86027-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89034.gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.for.86042-89022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86042-89022.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86042-89022.gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.for.86036-89028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89028.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89028.gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093864%7Cgb%7CEFC47500%2E1%7C.for.86030-89424.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89424.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89424.gi%7C284093864%7Cgb%7CEFC47500%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.for.86030-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091293%7Cgb%7CEFC44940%2E1%7C.for.86021-89028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86021-89028.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86021-89028.gi%7C284091293%7Cgb%7CEFC44940%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097003%7Cgb%7CEFC50630%2E1%7C.for.86036-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89034.gi%7C284097003%7Cgb%7CEFC50630%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.for.85994-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.85994-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.85994-89034.gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.for.86030-89037.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89037.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89037.gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090146%7Cgb%7CEFC43799%2E1%7C.for.86024-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86024-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86024-89034.gi%7C284090146%7Cgb%7CEFC43799%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088717%7Cgb%7CEFC42379%2E1%7C.for.86030-89028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89028.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89028.gi%7C284088717%7Cgb%7CEFC42379%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.for.85871-89097.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.85871-89097.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.85871-89097.gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.for.86021-89061.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86021-89061.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86021-89061.gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.for.86015-89097.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86015-89097.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86015-89097.gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.for.86033-89082.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86033-89082.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86033-89082.gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.for.86024-89061.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86024-89061.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86024-89061.gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.for.86024-89052.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86024-89052.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86024-89052.gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084506%7Cgb%7CEFC38198%2E1%7C.for.86036-89049.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89049.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89049.gi%7C284084506%7Cgb%7CEFC38198%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096530%7Cgb%7CEFC50158%2E1%7C.for.86051-89022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86051-89022.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86051-89022.gi%7C284096530%7Cgb%7CEFC50158%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.for.86033-89043.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86033-89043.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86033-89043.gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.for.86225-88791.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86225-88791.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86225-88791.gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086531%7Cgb%7CEFC40207%2E1%7C.for.86030-89439.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89439.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89439.gi%7C284086531%7Cgb%7CEFC40207%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090243%7Cgb%7CEFC43896%2E1%7C.for.86030-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.gi%7C284090243%7Cgb%7CEFC43896%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.for.86030-89487.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89487.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89487.gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.for.86036-89022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89022.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89022.gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.for.86063-89115.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86063-89115.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86063-89115.gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.for.86063-89037.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86063-89037.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86063-89037.gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091599%7Cgb%7CEFC45245%2E1%7C.for.86069-89040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86069-89040.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86069-89040.gi%7C284091599%7Cgb%7CEFC45245%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085299%7Cgb%7CEFC38984%2E1%7C.for.86027-89025.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89025.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89025.gi%7C284085299%7Cgb%7CEFC38984%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084169%7Cgb%7CEFC37864%2E1%7C.for.92442-94214.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.92442-94214.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.92442-94214.gi%7C284084169%7Cgb%7CEFC37864%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093150%7Cgb%7CEFC46789%2E1%7C.for.96856-97871.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.96856-97871.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.96856-97871.gi%7C284093150%7Cgb%7CEFC46789%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086033%7Cgb%7CEFC39712%2E1%7C.for.97180-99460.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.97180-99460.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.97180-99460.gi%7C284086033%7Cgb%7CEFC39712%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097005%7Cgb%7CEFC50632%2E1%7C.for.99012-100303.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.99012-100303.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.99012-100303.gi%7C284097005%7Cgb%7CEFC50632%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094875%7Cgb%7CEFC48508%2E1%7C.for.100822-102855.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.100822-102855.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.100822-102855.gi%7C284094875%7Cgb%7CEFC48508%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090837%7Cgb%7CEFC44487%2E1%7C.for.101080-102267.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.101080-102267.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.101080-102267.gi%7C284090837%7Cgb%7CEFC44487%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087994%7Cgb%7CEFC41660%2E1%7C.for.106048-107651.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106048-107651.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106048-107651.gi%7C284087994%7Cgb%7CEFC41660%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:16 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:16 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:16 now processing 0 total clusters:16 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:13 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 ...processing 0 of 25 ...processing 1 of 25 ...processing 2 of 25 ...processing 3 of 25 ...processing 4 of 25 ...processing 5 of 25 ...processing 6 of 25 ...processing 7 of 25 ...processing 8 of 25 ...processing 9 of 25 ...processing 10 of 25 ...processing 11 of 25 ...processing 12 of 25 ...processing 13 of 25 ...processing 14 of 25 ...processing 15 of 25 ...processing 16 of 25 ...processing 17 of 25 ...processing 18 of 25 ...processing 19 of 25 ...trimming the rest total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:21 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:21 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 20 ...processing 1 of 20 ...processing 2 of 20 ...processing 3 of 20 ...processing 4 of 20 ...processing 5 of 20 ...processing 6 of 20 ...processing 7 of 20 ...processing 8 of 20 ...processing 9 of 20 ...processing 10 of 20 ...processing 11 of 20 ...processing 12 of 20 ...processing 13 of 20 ...processing 14 of 20 ...processing 15 of 20 ...processing 16 of 20 ...processing 17 of 20 ...processing 18 of 20 ...processing 19 of 20 ...trimming the rest ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:14 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.237-1449.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.237-1449.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.237-1449.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.3490-4150.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.3490-4150.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.3490-4150.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.12187-13518.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.12187-13518.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.12187-13518.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.30498-32914.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.30498-32914.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.30498-32914.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.40815-43764.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.40815-43764.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.40815-43764.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.45719-46717.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.45719-46717.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.45719-46717.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.54239-57877.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.54239-57877.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.54239-57877.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.65665-67730.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.65665-67730.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.65665-67730.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.69301-72129.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.69301-72129.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.69301-72129.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.86214-88915.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.86214-88915.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.86214-88915.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.92599-94014.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.92599-94014.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.92599-94014.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.96839-97671.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.96839-97671.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.96839-97671.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.100939-102655.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.100939-102655.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.100939-102655.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.109353-111698.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.109353-111698.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.109353-111698.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.434-1250.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.434-1250.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.434-1250.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.28492-29772.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.28492-29772.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.28492-29772.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.34216-34808.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.34216-34808.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.34216-34808.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.50087-51178.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.50087-51178.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.50087-51178.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.57824-59575.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.57824-59575.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.57824-59575.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.61045-61947.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.61045-61947.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.61045-61947.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.72004-73098.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.72004-73098.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.72004-73098.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.81365-83280.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.81365-83280.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.81365-83280.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.89359-90195.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.89359-90195.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.89359-90195.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.97379-100462.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.97379-100462.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.97379-100462.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.104109-105298.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.104109-105298.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.104109-105298.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.106175-107451.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.106175-107451.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.106175-107451.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C8 Length: 71281 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:3 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:5 current j:0 j_size:5 current j:1 j_size:5 current j:2 j_size:5 current j:3 j_size:5 current j:4 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C8.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C8.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11569%7Crna-binding.for.1136-2408.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.1136-2408.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.1136-2408.Ar_EST_120301b_c11569%7Crna-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1047%7Cdual.for.5428-7005.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.5428-7005.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.5428-7005.120301b_Contig1047%7Cdual.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9703%7Cwd40.for.7390-8926.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.7390-8926.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.7390-8926.Ar_EST_120301b_c9703%7Cwd40.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig523%7Cmetaxin.for.9216-10932.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.9216-10932.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.9216-10932.120301b_Contig523%7Cmetaxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14860%7Cmetaxin-3.for.9823-11135.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.9823-11135.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.9823-11135.Ar_EST_120301b_c14860%7Cmetaxin-3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17966%7Cmitogen-activated.for.10560-12367.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.10560-12367.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.10560-12367.Ar_EST_120301b_c17966%7Cmitogen-activated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11899%7Cmix.for.12967-14078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.12967-14078.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.12967-14078.Ar_EST_120301b_c11899%7Cmix.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14282%7C---NA---.for.13676-14878.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.13676-14878.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.13676-14878.Ar_EST_120301b_c14282%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3639%7C0298671.for.14112-16868.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.14112-16868.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.14112-16868.Ar_EST_120301b_c3639%7C0298671.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8179%7Cnormalized.for.16113-17345.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.16113-17345.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.16113-17345.Ar_EST_120301b_rep_c8179%7Cnormalized.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2878%7Cacyloxyacyl.for.18765-20718.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.18765-20718.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.18765-20718.Ar_EST_120301b_c2878%7Cacyloxyacyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig944%7Cmitochondrial.for.20293-21752.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.20293-21752.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.20293-21752.120301b_Contig944%7Cmitochondrial.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14537%7C---NA---.for.25006-25909.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.25006-25909.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.25006-25909.Ar_EST_120301b_c14537%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig939%7Cacid.for.24454-25816.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.24454-25816.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.24454-25816.120301b_Contig939%7Cacid.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c944%7Cest_lsaa_evv_1238232.for.26963-28583.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.26963-28583.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.26963-28583.Ar_EST_120301b_c944%7Cest_lsaa_evv_1238232.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14759%7C---NA---.for.29307-30510.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.29307-30510.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.29307-30510.Ar_EST_120301b_c14759%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12291%7Cest03036.for.28979-30318.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.28979-30318.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.28979-30318.Ar_EST_120301b_c12291%7Cest03036.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16855%7Cankyrin.for.32668-33901.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.32668-33901.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.32668-33901.Ar_EST_120301b_c16855%7Cankyrin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2487%7Ccawz.for.36801-38241.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.36801-38241.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.36801-38241.Ar_EST_120301b_c2487%7Ccawz.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9594%7Cy1842_erwct.for.39726-41093.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.39726-41093.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.39726-41093.Ar_EST_120301b_c9594%7Cy1842_erwct.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4074%7Cpredicted.for.44695-46110.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.44695-46110.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.44695-46110.Ar_EST_120301b_rep_c4074%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12747%7C---NA---.for.44884-46065.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.44884-46065.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.44884-46065.Ar_EST_120301b_rep_c12747%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17783%7Cadenylate.for.45407-46440.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.45407-46440.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.45407-46440.Ar_EST_120301b_rep_c17783%7Cadenylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5659%7Cadenylate.for.45408-46915.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.45408-46915.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.45408-46915.Ar_EST_120301b_rep_c5659%7Cadenylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4208%7Cadenylate.for.45358-46915.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.45358-46915.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.45358-46915.Ar_EST_120301b_rep_c4208%7Cadenylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c897%7C3.for.48834-50442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.48834-50442.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.48834-50442.Ar_EST_120301b_c897%7C3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c535%7Cubiquitin-specific.for.52735-53854.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.52735-53854.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.52735-53854.Ar_EST_120301b_c535%7Cubiquitin-specific.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c876%7Cprotein.for.51138-54171.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.51138-54171.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.51138-54171.Ar_EST_120301b_c876%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19537%7Cubiquitin-specific.for.51261-52540.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.51261-52540.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.51261-52540.Ar_EST_120301b_rep_c19537%7Cubiquitin-specific.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6146%7Cprotein.for.54235-55373.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54235-55373.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54235-55373.Ar_EST_120301b_rep_c6146%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig907%7Cubiquitin-conjugating.for.54109-55392.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54109-55392.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54109-55392.120301b_Contig907%7Cubiquitin-conjugating.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1366%7Cphospholipid-transporting.for.55948-58049.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55948-58049.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55948-58049.120301b_Contig1366%7Cphospholipid-transporting.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c820%7Caminophospholipid.for.57236-58683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.57236-58683.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.57236-58683.Ar_EST_120301b_c820%7Caminophospholipid.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18642%7Cprotein.for.55305-57062.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55305-57062.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55305-57062.Ar_EST_120301b_c18642%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1892%7Cprobable.for.54733-56157.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54733-56157.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54733-56157.Ar_EST_120301b_c1892%7Cprobable.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10313%7Cphospholipid-transporting.for.58014-59073.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.58014-59073.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.58014-59073.Ar_EST_120301b_c10313%7Cphospholipid-transporting.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15133%7Cpredicted.for.60971-62209.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.60971-62209.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.60971-62209.Ar_EST_120301b_c15133%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3416%7Cprotein.for.65768-67717.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.65768-67717.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.65768-67717.Ar_EST_120301b_c3416%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11057%7Cupf0061.for.66140-67643.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.66140-67643.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.66140-67643.Ar_EST_120301b_c11057%7Cupf0061.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20360%7Cacid.for.68216-69457.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68216-69457.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68216-69457.Ar_EST_120301b_rep_c20360%7Cacid.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12404%7Cacid.for.68179-69815.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68179-69815.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68179-69815.Ar_EST_120301b_rep_c12404%7Cacid.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig348%7Cacid.for.68030-69951.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68030-69951.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68030-69951.120301b_Contig348%7Cacid.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6228%7Ceri1.for.69349-70801.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.69349-70801.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.69349-70801.Ar_EST_120301b_rep_c6228%7Ceri1.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:35 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:34 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:34 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:40 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:38 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:27 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:33 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:29 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:33 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085834%7Cgb%7CEFC39515%2E1%7C.for.575-2502.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.575-2502.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.575-2502.gi%7C284085834%7Cgb%7CEFC39515%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C18033042%7Cgb%7CAAL56965%2E1%7CAF322049_1.for.3535-5826.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3535-5826.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3535-5826.gi%7C18033042%7Cgb%7CAAL56965%2E1%7CAF322049_1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094205%7Cgb%7CEFC47840%2E1%7C.for.3427-5844.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3427-5844.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3427-5844.gi%7C284094205%7Cgb%7CEFC47840%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083921%7Cgb%7CEFC37619%2E1%7C.for.3427-5808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3427-5808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3427-5808.gi%7C284083921%7Cgb%7CEFC37619%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094210%7Cgb%7CEFC47845%2E1%7C.for.3439-5862.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3439-5862.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3439-5862.gi%7C284094210%7Cgb%7CEFC47845%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089748%7Cgb%7CEFC43404%2E1%7C.for.3415-5961.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3415-5961.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3415-5961.gi%7C284089748%7Cgb%7CEFC43404%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095071%7Cgb%7CEFC48703%2E1%7C.for.6332-7440.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.6332-7440.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.6332-7440.gi%7C284095071%7Cgb%7CEFC48703%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083404%7Cgb%7CEFC37108%2E1%7C.for.7147-8987.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.7147-8987.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.7147-8987.gi%7C284083404%7Cgb%7CEFC37108%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089145%7Cgb%7CEFC42804%2E1%7C.for.10634-12660.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.10634-12660.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.10634-12660.gi%7C284089145%7Cgb%7CEFC42804%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095262%7Cgb%7CEFC48893%2E1%7C.for.11987-13041.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11987-13041.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11987-13041.gi%7C284095262%7Cgb%7CEFC48893%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091315%7Cgb%7CEFC44962%2E1%7C.for.11954-13208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11954-13208.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11954-13208.gi%7C284091315%7Cgb%7CEFC44962%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090821%7Cgb%7CEFC44471%2E1%7C.for.11948-13199.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11948-13199.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11948-13199.gi%7C284090821%7Cgb%7CEFC44471%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090721%7Cgb%7CEFC44371%2E1%7C.for.12086-13205.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.12086-13205.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.12086-13205.gi%7C284090721%7Cgb%7CEFC44371%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094778%7Cgb%7CEFC48411%2E1%7C.for.12038-13029.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.12038-13029.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.12038-13029.gi%7C284094778%7Cgb%7CEFC48411%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089020%7Cgb%7CEFC42680%2E1%7C.for.11930-13208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13208.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13208.gi%7C284089020%7Cgb%7CEFC42680%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094435%7Cgb%7CEFC48069%2E1%7C.for.11930-13041.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13041.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13041.gi%7C284094435%7Cgb%7CEFC48069%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084285%7Cgb%7CEFC37979%2E1%7C.for.11930-13208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13208.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13208.gi%7C284084285%7Cgb%7CEFC37979%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085637%7Cgb%7CEFC39319%2E1%7C.for.11930-13041.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13041.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13041.gi%7C284085637%7Cgb%7CEFC39319%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090223%7Cgb%7CEFC43876%2E1%7C.for.11948-13044.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11948-13044.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11948-13044.gi%7C284090223%7Cgb%7CEFC43876%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089016%7Cgb%7CEFC42676%2E1%7C.for.11951-13041.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11951-13041.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11951-13041.gi%7C284089016%7Cgb%7CEFC42676%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087164%7Cgb%7CEFC40836%2E1%7C.for.11939-13017.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11939-13017.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11939-13017.gi%7C284087164%7Cgb%7CEFC40836%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093747%7Cgb%7CEFC47384%2E1%7C.for.11930-13107.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13107.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13107.gi%7C284093747%7Cgb%7CEFC47384%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096426%7Cgb%7CEFC50054%2E1%7C.for.12095-13199.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.12095-13199.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.12095-13199.gi%7C284096426%7Cgb%7CEFC50054%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089587%7Cgb%7CEFC43244%2E1%7C.for.18781-20717.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.18781-20717.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.18781-20717.gi%7C284089587%7Cgb%7CEFC43244%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085037%7Cgb%7CEFC38724%2E1%7C.for.19961-21784.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.19961-21784.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.19961-21784.gi%7C284085037%7Cgb%7CEFC38724%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083566%7Cgb%7CEFC37268%2E1%7C.for.22837-24732.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.22837-24732.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.22837-24732.gi%7C284083566%7Cgb%7CEFC37268%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089709%7Cgb%7CEFC43365%2E1%7C.for.24184-25881.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.24184-25881.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.24184-25881.gi%7C284089709%7Cgb%7CEFC43365%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093351%7Cgb%7CEFC46989%2E1%7C.for.34683-36673.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.34683-36673.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.34683-36673.gi%7C284093351%7Cgb%7CEFC46989%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084118%7Cgb%7CEFC37814%2E1%7C.for.44305-45479.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.44305-45479.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.44305-45479.gi%7C284084118%7Cgb%7CEFC37814%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085702%7Cgb%7CEFC39384%2E1%7C.for.45412-46883.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.45412-46883.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.45412-46883.gi%7C284085702%7Cgb%7CEFC39384%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085662%7Cgb%7CEFC39344%2E1%7C.for.46121-48984.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.46121-48984.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.46121-48984.gi%7C284085662%7Cgb%7CEFC39344%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090469%7Cgb%7CEFC44121%2E1%7C.for.51128-54445.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.51128-54445.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.51128-54445.gi%7C284090469%7Cgb%7CEFC44121%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091315%7Cgb%7CEFC44962%2E1%7C.for.54190-55421.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54190-55421.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54190-55421.gi%7C284091315%7Cgb%7CEFC44962%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090821%7Cgb%7CEFC44471%2E1%7C.for.54184-55409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54184-55409.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54184-55409.gi%7C284090821%7Cgb%7CEFC44471%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089020%7Cgb%7CEFC42680%2E1%7C.for.54163-55403.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54163-55403.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54163-55403.gi%7C284089020%7Cgb%7CEFC42680%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094435%7Cgb%7CEFC48069%2E1%7C.for.54166-55394.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54166-55394.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54166-55394.gi%7C284094435%7Cgb%7CEFC48069%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084285%7Cgb%7CEFC37979%2E1%7C.for.54166-55403.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54166-55403.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54166-55403.gi%7C284084285%7Cgb%7CEFC37979%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085637%7Cgb%7CEFC39319%2E1%7C.for.54166-55391.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54166-55391.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54166-55391.gi%7C284085637%7Cgb%7CEFC39319%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090223%7Cgb%7CEFC43876%2E1%7C.for.54184-55418.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54184-55418.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54184-55418.gi%7C284090223%7Cgb%7CEFC43876%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093747%7Cgb%7CEFC47384%2E1%7C.for.54166-55400.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54166-55400.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54166-55400.gi%7C284093747%7Cgb%7CEFC47384%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096426%7Cgb%7CEFC50054%2E1%7C.for.54334-55418.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54334-55418.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54334-55418.gi%7C284096426%7Cgb%7CEFC50054%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089788%7Cgb%7CEFC43443%2E1%7C.for.55055-59474.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55055-59474.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55055-59474.gi%7C284089788%7Cgb%7CEFC43443%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092821%7Cgb%7CEFC46461%2E1%7C.for.54815-59459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54815-59459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54815-59459.gi%7C284092821%7Cgb%7CEFC46461%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083022%7Cgb%7CEFC36730%2E1%7C.for.55181-59459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55181-59459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55181-59459.gi%7C284083022%7Cgb%7CEFC36730%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093552%7Cgb%7CEFC47189%2E1%7C.for.55133-59459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55133-59459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55133-59459.gi%7C284093552%7Cgb%7CEFC47189%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085695%7Cgb%7CEFC39377%2E1%7C.for.54833-59474.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54833-59474.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54833-59474.gi%7C284085695%7Cgb%7CEFC39377%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082133%7Cgb%7CEFC35904%2E1%7C.for.55181-56826.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55181-56826.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55181-56826.gi%7C284082133%7Cgb%7CEFC35904%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085871%7Cgb%7CEFC39552%2E1%7C.for.68157-69939.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68157-69939.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68157-69939.gi%7C284085871%7Cgb%7CEFC39552%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084771%7Cgb%7CEFC38460%2E1%7C.for.68157-69939.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68157-69939.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68157-69939.gi%7C284084771%7Cgb%7CEFC38460%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088755%7Cgb%7CEFC42417%2E1%7C.for.68157-69939.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68157-69939.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68157-69939.gi%7C284088755%7Cgb%7CEFC42417%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089891%7Cgb%7CEFC43546%2E1%7C.for.68157-69939.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68157-69939.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68157-69939.gi%7C284089891%7Cgb%7CEFC43546%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096470%7Cgb%7CEFC50098%2E1%7C.for.69373-70748.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.69373-70748.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.69373-70748.gi%7C284096470%7Cgb%7CEFC50098%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092674%7Cgb%7CEFC46315%2E1%7C.for.69373-70766.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.69373-70766.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.69373-70766.gi%7C284092674%7Cgb%7CEFC46315%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:17 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:17 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:10 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:10 now processing 0 total clusters:10 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:10 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:13 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:13 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:13 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.3614-7246.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.3614-7246.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.3614-7246.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.9990-12460.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.9990-12460.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.9990-12460.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.13126-13878.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.13126-13878.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.13126-13878.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.16310-17234.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.16310-17234.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.16310-17234.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.18964-20518.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.18964-20518.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.18964-20518.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.24383-25709.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.24383-25709.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.24383-25709.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.29178-30310.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.29178-30310.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.29178-30310.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.32867-33701.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.32867-33701.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.32867-33701.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.34864-36473.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.34864-36473.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.34864-36473.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.39925-40893.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.39925-40893.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.39925-40893.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.44894-46715.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.44894-46715.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.44894-46715.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.61156-62009.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.61156-62009.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.61156-62009.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.68225-70601.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.68225-70601.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.68225-70601.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.774-2302.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.774-2302.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.774-2302.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.7589-8726.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.7589-8726.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.7589-8726.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.12129-13008.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.12129-13008.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.12129-13008.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.20160-21584.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.20160-21584.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.20160-21584.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.27162-28383.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.27162-28383.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.27162-28383.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.37000-38041.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.37000-38041.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.37000-38041.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.44504-45279.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.44504-45279.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.44504-45279.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.46320-48784.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.46320-48784.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.46320-48784.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.49033-50262.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.49033-50262.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.49033-50262.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.51327-54245.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.51327-54245.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.51327-54245.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.54308-59274.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.54308-59274.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.54308-59274.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.65959-67517.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.65959-67517.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.65959-67517.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C9 Length: 143137 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:54 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:66 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:41 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:64 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:58 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:64 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:49 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:63 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:57 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:57 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:6 current j:0 j_size:6 current j:1 j_size:6 current j:2 j_size:6 current j:3 j_size:6 current j:4 j_size:6 current j:5 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C9.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C9.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:10 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:10 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:4 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2247%7Cm7g%285.for.2328-3644.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.2328-3644.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.2328-3644.Ar_EST_120301b_c2247%7Cm7g%285.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1181%7Cglutaminase.for.3456-5008.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.3456-5008.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.3456-5008.Ar_EST_120301b_c1181%7Cglutaminase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17708%7Ccalcium-dependent.for.4667-5932.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.4667-5932.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.4667-5932.Ar_EST_120301b_c17708%7Ccalcium-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18654%7Chistone.for.7274-8455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7274-8455.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7274-8455.Ar_EST_120301b_rep_c18654%7Chistone.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20047%7Chistone.for.7291-8488.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7291-8488.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7291-8488.Ar_EST_120301b_rep_c20047%7Chistone.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15057%7Chypothetical.for.8269-9793.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.8269-9793.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.8269-9793.Ar_EST_120301b_c15057%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11519%7Ccarboxylesterase.for.15701-17156.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.15701-17156.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.15701-17156.Ar_EST_120301b_c11519%7Ccarboxylesterase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12514%7Cic0aaa79dd02rm1.for.20388-21618.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.20388-21618.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.20388-21618.Ar_EST_120301b_c12514%7Cic0aaa79dd02rm1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c122%7Cprotein.for.23727-25878.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.23727-25878.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.23727-25878.Ar_EST_120301b_c122%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig707%7Cstructure.for.23281-25022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.23281-25022.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.23281-25022.120301b_Contig707%7Cstructure.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig744%7Cvesicle.for.27994-29515.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.27994-29515.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.27994-29515.120301b_Contig744%7Cvesicle.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1993%7Ccof-like.for.30494-31813.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.30494-31813.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.30494-31813.Ar_EST_120301b_c1993%7Ccof-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11129%7Csl_.for.34342-35297.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.34342-35297.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.34342-35297.Ar_EST_120301b_rep_c11129%7Csl_.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17985%7Cheat.for.35244-36515.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35244-36515.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35244-36515.Ar_EST_120301b_c17985%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18115%7C---NA---.for.38253-39152.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.38253-39152.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.38253-39152.Ar_EST_120301b_c18115%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10295%7Cgh_hypt_01-01-10r_h06_.for.43281-44143.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.43281-44143.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.43281-44143.Ar_EST_120301b_c10295%7Cgh_hypt_01-01-10r_h06_.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5908%7Cest154.for.44564-45707.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44564-45707.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44564-45707.Ar_EST_120301b_rep_c5908%7Cest154.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17536%7Cace00011780.for.44608-45707.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44608-45707.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44608-45707.Ar_EST_120301b_rep_c17536%7Cace00011780.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19922%7Csbay-f90.for.45128-46080.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.45128-46080.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.45128-46080.Ar_EST_120301b_rep_c19922%7Csbay-f90.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18817%7Ccdn38p0008e01.for.44704-45722.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44704-45722.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44704-45722.Ar_EST_120301b_rep_c18817%7Ccdn38p0008e01.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13131%7Clucilia.for.44577-45900.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44577-45900.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44577-45900.Ar_EST_120301b_rep_c13131%7Clucilia.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7193%7Csoybean.for.44565-45685.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44565-45685.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44565-45685.Ar_EST_120301b_rep_c7193%7Csoybean.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig645%7Ccytochrome.for.44685-46267.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44685-46267.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44685-46267.120301b_Contig645%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7085%7Cfq079731.for.44762-45838.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44762-45838.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44762-45838.Ar_EST_120301b_rep_c7085%7Cfq079731.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig637%7Cest154.for.44568-45722.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44568-45722.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44568-45722.120301b_Contig637%7Cest154.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7059%7Cfp515931.for.44757-46264.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44757-46264.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44757-46264.Ar_EST_120301b_rep_c7059%7Cfp515931.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig630%7Chypothetical.for.44687-45807.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44687-45807.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44687-45807.120301b_Contig630%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17959%7Cms1-0010t-d100-c05-.for.45973-46909.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.45973-46909.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.45973-46909.Ar_EST_120301b_c17959%7Cms1-0010t-d100-c05-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13118%7C---NA---.for.46737-48076.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.46737-48076.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.46737-48076.Ar_EST_120301b_c13118%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19997%7Cendonuclease.for.49277-50751.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.49277-50751.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.49277-50751.Ar_EST_120301b_c19997%7Cendonuclease.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7711%7Cendonuclease.for.49011-50427.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.49011-50427.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.49011-50427.Ar_EST_120301b_c7711%7Cendonuclease.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1977%7Cendonuclease.for.49186-50532.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.49186-50532.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.49186-50532.Ar_EST_120301b_c1977%7Cendonuclease.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18660%7Cendonuclease.for.49180-50761.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.49180-50761.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.49180-50761.Ar_EST_120301b_c18660%7Cendonuclease.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14465%7Cpredicted.for.61002-62245.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.61002-62245.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.61002-62245.Ar_EST_120301b_c14465%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20376%7Cprotein.for.67849-70497.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.67849-70497.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.67849-70497.Ar_EST_120301b_c20376%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15791%7Cmoobi53tf.for.71085-72566.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.71085-72566.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.71085-72566.Ar_EST_120301b_c15791%7Cmoobi53tf.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12677%7Cmulti-sensor.for.76311-78090.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.76311-78090.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.76311-78090.Ar_EST_120301b_c12677%7Cmulti-sensor.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3335%7Caerobic.for.77895-79314.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.77895-79314.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.77895-79314.Ar_EST_120301b_c3335%7Caerobic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9381%7Chistidine.for.78583-79990.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.78583-79990.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.78583-79990.Ar_EST_120301b_c9381%7Chistidine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8780%7Cccgo.for.83976-85494.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.83976-85494.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.83976-85494.Ar_EST_120301b_c8780%7Cccgo.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10994%7Cct751907.for.87695-88589.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.87695-88589.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.87695-88589.Ar_EST_120301b_c10994%7Cct751907.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18336%7C---NA---.for.95445-96809.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.95445-96809.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.95445-96809.Ar_EST_120301b_c18336%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4188%7Chistone.for.101375-103374.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.101375-103374.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.101375-103374.Ar_EST_120301b_rep_c4188%7Chistone.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5666%7Cc-terminal.for.101564-103377.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.101564-103377.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.101564-103377.Ar_EST_120301b_rep_c5666%7Cc-terminal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19411%7C60s.for.101822-102850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.101822-102850.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.101822-102850.Ar_EST_120301b_rep_c19411%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15541%7Ctyrosyl-trna.for.104055-105009.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.104055-105009.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.104055-105009.Ar_EST_120301b_rep_c15541%7Ctyrosyl-trna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2608%7Ccarboxypeptidase.for.102704-105003.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.102704-105003.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.102704-105003.Ar_EST_120301b_c2608%7Ccarboxypeptidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19821%7Cprotein.for.104883-106741.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.104883-106741.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.104883-106741.Ar_EST_120301b_c19821%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8714%7Cfs351607.for.107515-109235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.107515-109235.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.107515-109235.Ar_EST_120301b_c8714%7Cfs351607.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1151%7Cprotein.for.109075-110229.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.109075-110229.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.109075-110229.Ar_EST_120301b_c1151%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8321%7Chypothetical.for.113081-114435.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.113081-114435.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.113081-114435.Ar_EST_120301b_c8321%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18042%7Cmembrane-associated.for.114907-116209.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.114907-116209.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.114907-116209.Ar_EST_120301b_c18042%7Cmembrane-associated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9130%7Chypothetical.for.122599-123971.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.122599-123971.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.122599-123971.Ar_EST_120301b_rep_c9130%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3158%7Catp-dependent.for.130435-132491.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.130435-132491.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.130435-132491.Ar_EST_120301b_c3158%7Catp-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16159%7Cpentapeptide.for.127438-128733.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.127438-128733.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.127438-128733.Ar_EST_120301b_c16159%7Cpentapeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17324%7Cdeah-box.for.129804-131312.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.129804-131312.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.129804-131312.Ar_EST_120301b_c17324%7Cdeah-box.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13668%7Cpentapeptide.for.126833-134289.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.126833-134289.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.126833-134289.Ar_EST_120301b_c13668%7Cpentapeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18239%7Cprotein.for.134008-135254.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.134008-135254.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.134008-135254.Ar_EST_120301b_c18239%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14682%7Cfy377012.for.134325-135441.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.134325-135441.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.134325-135441.Ar_EST_120301b_c14682%7Cfy377012.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1054%7Creverse.for.137097-139562.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.137097-139562.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.137097-139562.120301b_Contig1054%7Creverse.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig87%7Creverse.for.137443-141840.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.137443-141840.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.137443-141840.120301b_Contig87%7Creverse.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1127%7Csite-specific.for.138478-140457.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.138478-140457.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.138478-140457.Ar_EST_120301b_c1127%7Csite-specific.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11365%7C---NA---.for.140516-141818.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.140516-141818.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.140516-141818.Ar_EST_120301b_c11365%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1151%7Cprotein.for.139510-140849.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.139510-140849.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.139510-140849.Ar_EST_120301b_c1151%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15418%7C0173437.for.141397-142458.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.141397-142458.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.141397-142458.Ar_EST_120301b_c15418%7C0173437.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1468%7Cfy881664.for.141888-143137.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.141888-143137.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.141888-143137.Ar_EST_120301b_c1468%7Cfy881664.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17518%7C1098310.for.141666-143078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.141666-143078.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.141666-143078.Ar_EST_120301b_c17518%7C1098310.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:35 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:35 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:34 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:29 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:40 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:54 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:41 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:53 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:55 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:34 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:30 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096617%7Cgb%7CEFC50245%2E1%7C.for.3766-5632.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.3766-5632.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.3766-5632.gi%7C284096617%7Cgb%7CEFC50245%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085117%7Cgb%7CEFC38803%2E1%7C.for.7281-8482.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7281-8482.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7281-8482.gi%7C284085117%7Cgb%7CEFC38803%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094028%7Cgb%7CEFC47663%2E1%7C.for.7281-8437.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7281-8437.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7281-8437.gi%7C284094028%7Cgb%7CEFC47663%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096335%7Cgb%7CEFC49963%2E1%7C.for.7281-8476.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7281-8476.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7281-8476.gi%7C284096335%7Cgb%7CEFC49963%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083146%7Cgb%7CEFC36852%2E1%7C.for.7272-8479.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7272-8479.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7272-8479.gi%7C284083146%7Cgb%7CEFC36852%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096073%7Cgb%7CEFC49702%2E1%7C.for.7272-8479.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7272-8479.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7272-8479.gi%7C284096073%7Cgb%7CEFC49702%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083449%7Cgb%7CEFC37152%2E1%7C.for.7275-8479.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7275-8479.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7275-8479.gi%7C284083449%7Cgb%7CEFC37152%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090015%7Cgb%7CEFC43669%2E1%7C.for.7518-8467.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7518-8467.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7518-8467.gi%7C284090015%7Cgb%7CEFC43669%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088656%7Cgb%7CEFC42318%2E1%7C.for.7272-8479.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7272-8479.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7272-8479.gi%7C284088656%7Cgb%7CEFC42318%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082495%7Cgb%7CEFC36212%2E1%7C.for.16753-17813.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.16753-17813.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.16753-17813.gi%7C284082495%7Cgb%7CEFC36212%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085727%7Cgb%7CEFC39409%2E1%7C.for.23366-25512.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.23366-25512.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.23366-25512.gi%7C284085727%7Cgb%7CEFC39409%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081155%7Cgb%7CEFC35313%2E1%7C.for.31897-33191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33191.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33191.gi%7C284081155%7Cgb%7CEFC35313%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092983%7Cgb%7CEFC46623%2E1%7C.for.31897-33191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33191.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33191.gi%7C284092983%7Cgb%7CEFC46623%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096875%7Cgb%7CEFC50502%2E1%7C.for.31933-33185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31933-33185.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31933-33185.gi%7C284096875%7Cgb%7CEFC50502%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090267%7Cgb%7CEFC43920%2E1%7C.for.31891-33125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31891-33125.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31891-33125.gi%7C284090267%7Cgb%7CEFC43920%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093592%7Cgb%7CEFC47229%2E1%7C.for.31933-33155.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31933-33155.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31933-33155.gi%7C284093592%7Cgb%7CEFC47229%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089692%7Cgb%7CEFC43348%2E1%7C.for.31933-33176.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31933-33176.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31933-33176.gi%7C284089692%7Cgb%7CEFC43348%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093109%7Cgb%7CEFC46748%2E1%7C.for.31933-33137.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31933-33137.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31933-33137.gi%7C284093109%7Cgb%7CEFC46748%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088464%7Cgb%7CEFC42127%2E1%7C.for.31885-33191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31885-33191.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31885-33191.gi%7C284088464%7Cgb%7CEFC42127%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085514%7Cgb%7CEFC39197%2E1%7C.for.31897-33185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33185.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33185.gi%7C284085514%7Cgb%7CEFC39197%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094883%7Cgb%7CEFC48516%2E1%7C.for.31897-33185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33185.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33185.gi%7C284094883%7Cgb%7CEFC48516%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095464%7Cgb%7CEFC49095%2E1%7C.for.31888-33191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31888-33191.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31888-33191.gi%7C284095464%7Cgb%7CEFC49095%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086458%7Cgb%7CEFC40134%2E1%7C.for.31879-33191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31879-33191.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31879-33191.gi%7C284086458%7Cgb%7CEFC40134%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090503%7Cgb%7CEFC44154%2E1%7C.for.31897-33191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33191.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33191.gi%7C284090503%7Cgb%7CEFC44154%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087655%7Cgb%7CEFC41323%2E1%7C.for.35179-36215.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35179-36215.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35179-36215.gi%7C284087655%7Cgb%7CEFC41323%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094750%7Cgb%7CEFC48383%2E1%7C.for.35182-36185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35182-36185.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35182-36185.gi%7C284094750%7Cgb%7CEFC48383%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093665%7Cgb%7CEFC47302%2E1%7C.for.35185-36215.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35185-36215.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35185-36215.gi%7C284093665%7Cgb%7CEFC47302%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083002%7Cgb%7CEFC36710%2E1%7C.for.35167-36194.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35167-36194.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35167-36194.gi%7C284083002%7Cgb%7CEFC36710%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096189%7Cgb%7CEFC49818%2E1%7C.for.35200-36185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35200-36185.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35200-36185.gi%7C284096189%7Cgb%7CEFC49818%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097268%7Cgb%7CEFC50895%2E1%7C.for.35194-36119.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35194-36119.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35194-36119.gi%7C284097268%7Cgb%7CEFC50895%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087657%7Cgb%7CEFC41325%2E1%7C.for.35194-36185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35194-36185.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35194-36185.gi%7C284087657%7Cgb%7CEFC41325%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.53623-54797.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.53623-54797.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.53623-54797.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080808%7Cgb%7CEFC35194%2E1%7C.for.53641-54773.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.53641-54773.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.53641-54773.gi%7C284080808%7Cgb%7CEFC35194%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088718%7Cgb%7CEFC42380%2E1%7C.for.97321-99173.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.97321-99173.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.97321-99173.gi%7C284088718%7Cgb%7CEFC42380%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088128%7Cgb%7CEFC41793%2E1%7C.for.102638-105144.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.102638-105144.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.102638-105144.gi%7C284088128%7Cgb%7CEFC41793%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087793%7Cgb%7CEFC41460%2E1%7C.for.122538-123964.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.122538-123964.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.122538-123964.gi%7C284087793%7Cgb%7CEFC41460%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091622%7Cgb%7CEFC45268%2E1%7C.for.127758-128797.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.127758-128797.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.127758-128797.gi%7C284091622%7Cgb%7CEFC45268%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092450%7Cgb%7CEFC46092%2E1%7C.for.129955-132404.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.129955-132404.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.129955-132404.gi%7C284092450%7Cgb%7CEFC46092%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092967%7Cgb%7CEFC46607%2E1%7C.for.130477-132494.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.130477-132494.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.130477-132494.gi%7C284092967%7Cgb%7CEFC46607%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095326%7Cgb%7CEFC48957%2E1%7C.for.130348-132413.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.130348-132413.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.130348-132413.gi%7C284095326%7Cgb%7CEFC48957%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:10 now processing 0 total clusters:10 now processing 0 ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:10 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:10 now processing 0 total clusters:10 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:10 now processing 0 total clusters:10 now processing 0 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 12 ...processing 1 of 12 ...processing 2 of 12 ...processing 3 of 12 ...processing 4 of 12 ...processing 5 of 12 ...processing 6 of 12 ...processing 7 of 12 ...processing 8 of 12 ...processing 9 of 12 ...processing 10 of 12 ...processing 11 of 12 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:9 now processing 0 total clusters:9 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:20 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:20 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:20 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:20 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:20 now processing 0 total clusters:20 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.2527-3444.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.2527-3444.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.2527-3444.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.20587-21452.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.20587-21452.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.20587-21452.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.23565-25687.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.23565-25687.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.23565-25687.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.32078-32991.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.32078-32991.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.32078-32991.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.35393-36315.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.35393-36315.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.35393-36315.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.44759-45610.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.44759-45610.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.44759-45610.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.49353-50561.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.49353-50561.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.49353-50561.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.76510-79797.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.76510-79797.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.76510-79797.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.84168-85294.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.84168-85294.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.84168-85294.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.95633-96616.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.95633-96616.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.95633-96616.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.101574-103179.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.101574-103179.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.101574-103179.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.115045-116020.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.115045-116020.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.115045-116020.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.122667-123801.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.122667-123801.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.122667-123801.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.129957-132294.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.129957-132294.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.129957-132294.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.137252-141129.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.137252-141129.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.137252-141129.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.141596-142878.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.141596-142878.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.141596-142878.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.3655-5732.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.3655-5732.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.3655-5732.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.7392-8353.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.7392-8353.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.7392-8353.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.8468-9593.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.8468-9593.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.8468-9593.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.15900-16956.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.15900-16956.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.15900-16956.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.30678-31613.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.30678-31613.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.30678-31613.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.44776-46068.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.44776-46068.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.44776-46068.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.46936-47876.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.46936-47876.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.46936-47876.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.61201-62045.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.61201-62045.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.61201-62045.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.68048-70359.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.68048-70359.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.68048-70359.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.71228-72366.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.71228-72366.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.71228-72366.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.97520-98973.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.97520-98973.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.97520-98973.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.102837-104944.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.102837-104944.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.102837-104944.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.105082-106541.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.105082-106541.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.105082-106541.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.127632-128597.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.127632-128597.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.127632-128597.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.134207-135054.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.134207-135054.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.134207-135054.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.140715-141618.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.140715-141618.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.140715-141618.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C10 Length: 41445 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C10.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C10.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7990%7C%3Ap.for.1-1325.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.1-1325.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.1-1325.Ar_EST_120301b_c7990%7C%3Ap.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20004%7Crr3c854jq.for.1-895.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.1-895.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.1-895.Ar_EST_120301b_c20004%7Crr3c854jq.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15326%7Cccts.for.3101-4431.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.3101-4431.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.3101-4431.Ar_EST_120301b_c15326%7Cccts.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10775%7Csjs.for.4244-5630.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.4244-5630.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.4244-5630.Ar_EST_120301b_c10775%7Csjs.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18609%7Ctim-barrel.for.4880-6450.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.4880-6450.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.4880-6450.Ar_EST_120301b_c18609%7Ctim-barrel.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14489%7Cround.for.8011-9359.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.8011-9359.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.8011-9359.Ar_EST_120301b_c14489%7Cround.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5030%7Cthaumatin-like.for.13925-15433.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.13925-15433.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.13925-15433.Ar_EST_120301b_rep_c5030%7Cthaumatin-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11177%7C---NA---.for.14867-16020.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.14867-16020.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.14867-16020.Ar_EST_120301b_c11177%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3649%7Cthaumatin-like.for.14119-16160.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.14119-16160.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.14119-16160.Ar_EST_120301b_c3649%7Cthaumatin-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5431%7Cthaumatin-like.for.13925-15654.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.13925-15654.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.13925-15654.Ar_EST_120301b_rep_c5431%7Cthaumatin-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17044%7Cdiphthamide.for.16149-17668.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.16149-17668.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.16149-17668.Ar_EST_120301b_c17044%7Cdiphthamide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c438%7Cpredicted.for.18557-20020.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.18557-20020.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.18557-20020.Ar_EST_120301b_c438%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig292%7Cpredicted.for.20140-22013.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.20140-22013.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.20140-22013.120301b_Contig292%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15990%7Cpredicted.for.20407-21603.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.20407-21603.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.20407-21603.Ar_EST_120301b_c15990%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig108%7Cprotein.for.23629-25513.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.23629-25513.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.23629-25513.120301b_Contig108%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1336%7Cprotein.for.23583-25036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.23583-25036.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.23583-25036.Ar_EST_120301b_c1336%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12861%7Couter.for.26766-28223.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.26766-28223.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.26766-28223.Ar_EST_120301b_c12861%7Couter.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8318%7Corigin.for.33442-35248.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.33442-35248.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.33442-35248.Ar_EST_120301b_c8318%7Corigin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15788%7Cprotein.for.35397-36741.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.35397-36741.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.35397-36741.Ar_EST_120301b_c15788%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15057%7Chypothetical.for.37196-38399.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.37196-38399.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.37196-38399.Ar_EST_120301b_c15057%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13382%7Cankyrin.for.38547-39913.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.38547-39913.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.38547-39913.Ar_EST_120301b_c13382%7Cankyrin.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:4 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:5 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090147%7Cgb%7CEFC43800%2E1%7C.for.11234-13175.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.11234-13175.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.11234-13175.gi%7C284090147%7Cgb%7CEFC43800%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090178%7Cgb%7CEFC43831%2E1%7C.for.18566-20543.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.18566-20543.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.18566-20543.gi%7C284090178%7Cgb%7CEFC43831%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084450%7Cgb%7CEFC38143%2E1%7C.for.23716-25578.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.23716-25578.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.23716-25578.gi%7C284084450%7Cgb%7CEFC38143%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087263%7Cgb%7CEFC40934%2E1%7C.for.23716-25578.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.23716-25578.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.23716-25578.gi%7C284087263%7Cgb%7CEFC40934%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093311%7Cgb%7CEFC46949%2E1%7C.for.31780-34157.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.31780-34157.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.31780-34157.gi%7C284093311%7Cgb%7CEFC46949%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095584%7Cgb%7CEFC49214%2E1%7C.for.31780-34052.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.31780-34052.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.31780-34052.gi%7C284095584%7Cgb%7CEFC49214%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086204%7Cgb%7CEFC39882%2E1%7C.for.35715-36694.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.35715-36694.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.35715-36694.gi%7C284086204%7Cgb%7CEFC39882%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088638%7Cgb%7CEFC42300%2E1%7C.for.35605-36721.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.35605-36721.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.35605-36721.gi%7C284088638%7Cgb%7CEFC42300%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:2 now processing 0 total clusters:2 now processing 0 ...processing 0 of 2 ...processing 1 of 2 cleaning clusters.... total clusters:2 now processing 0 total clusters:2 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:5 now processing 0 total clusters:5 now processing 0 total clusters:5 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:5 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:5 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.0-1125.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.0-1125.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.0-1125.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.3300-4231.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.3300-4231.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.3300-4231.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.4443-5430.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.4443-5430.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.4443-5430.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.14124-15960.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.14124-15960.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.14124-15960.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.16348-17526.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.16348-17526.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.16348-17526.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.18756-21813.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.18756-21813.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.18756-21813.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.23782-25313.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.23782-25313.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.23782-25313.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.26965-28023.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.26965-28023.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.26965-28023.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.33641-35048.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.33641-35048.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.33641-35048.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.35596-36541.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.35596-36541.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.35596-36541.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.5079-6250.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.5079-6250.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.5079-6250.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.8210-9159.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.8210-9159.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.8210-9159.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.15066-15820.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.15066-15820.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.15066-15820.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.31979-33957.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.31979-33957.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.31979-33957.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C11 Length: 25661 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C11.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C11.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12658%7Csurface.for.11183-12467.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.11183-12467.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.11183-12467.Ar_EST_120301b_c12658%7Csurface.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17333%7C---NA---.for.12804-13730.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.12804-13730.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.12804-13730.Ar_EST_120301b_c17333%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1625%7Cpredicted.for.13250-14650.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.13250-14650.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.13250-14650.Ar_EST_120301b_c1625%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10919%7Chistone.for.13946-15700.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.13946-15700.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.13946-15700.Ar_EST_120301b_c10919%7Chistone.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9390%7Cniemann-pick.for.23587-25127.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.23587-25127.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.23587-25127.Ar_EST_120301b_c9390%7Cniemann-pick.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c579%7Cpatched.for.24367-25661.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.24367-25661.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.24367-25661.Ar_EST_120301b_c579%7Cpatched.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2814%7Cniemann-pick.for.23796-25595.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.23796-25595.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.23796-25595.Ar_EST_120301b_c2814%7Cniemann-pick.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:4 now processing 0 total clusters:4 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:4 now processing 0 total clusters:4 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:14 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:14 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:22 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:37 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:19 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:19 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:19 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:25 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:18 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:10 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.335-2502.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.335-2502.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.335-2502.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.for.539-2493.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.539-2493.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.539-2493.gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.for.512-2502.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.512-2502.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.512-2502.gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085983%7Cgb%7CEFC39663%2E1%7C.for.551-2454.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2454.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2454.gi%7C284085983%7Cgb%7CEFC39663%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.for.521-2502.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.521-2502.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.521-2502.gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085992%7Cgb%7CEFC39672%2E1%7C.for.161-2502.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.161-2502.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.161-2502.gi%7C284085992%7Cgb%7CEFC39672%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.for.557-2670.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.557-2670.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.557-2670.gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.for.671-2022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.671-2022.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.671-2022.gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088147%7Cgb%7CEFC41812%2E1%7C.for.554-2562.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.554-2562.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.554-2562.gi%7C284088147%7Cgb%7CEFC41812%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.for.548-2502.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2502.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2502.gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.for.548-2511.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2511.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2511.gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.for.524-2553.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.524-2553.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.524-2553.gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.for.539-2508.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.539-2508.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.539-2508.gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082687%7Cgb%7CEFC36400%2E1%7C.for.551-2505.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2505.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2505.gi%7C284082687%7Cgb%7CEFC36400%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.for.512-2505.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.512-2505.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.512-2505.gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085285%7Cgb%7CEFC38970%2E1%7C.for.551-2406.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2406.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2406.gi%7C284085285%7Cgb%7CEFC38970%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.for.548-2511.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2511.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2511.gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.for.551-2493.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2493.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2493.gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088717%7Cgb%7CEFC42379%2E1%7C.for.551-2475.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2475.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2475.gi%7C284088717%7Cgb%7CEFC42379%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097002%7Cgb%7CEFC50629%2E1%7C.for.548-2499.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2499.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2499.gi%7C284097002%7Cgb%7CEFC50629%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081579%7Cgb%7CEFC35529%2E1%7C.for.551-2472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2472.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2472.gi%7C284081579%7Cgb%7CEFC35529%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.for.545-2508.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.545-2508.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.545-2508.gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.for.548-2472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2472.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2472.gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.for.506-2481.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.506-2481.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.506-2481.gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.for.551-2484.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2484.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2484.gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.for.494-2511.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.494-2511.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.494-2511.gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.for.452-2454.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.452-2454.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.452-2454.gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.for.548-2493.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2493.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2493.gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.for.668-2457.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.668-2457.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.668-2457.gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.for.479-2472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.479-2472.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.479-2472.gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092203%7Cgb%7CEFC45846%2E1%7C.for.536-2511.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.536-2511.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.536-2511.gi%7C284092203%7Cgb%7CEFC45846%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.for.488-2541.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.488-2541.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.488-2541.gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095044%7Cgb%7CEFC48676%2E1%7C.for.542-2475.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.542-2475.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.542-2475.gi%7C284095044%7Cgb%7CEFC48676%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083967%7Cgb%7CEFC37665%2E1%7C.for.530-2553.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.530-2553.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.530-2553.gi%7C284083967%7Cgb%7CEFC37665%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087857%7Cgb%7CEFC41524%2E1%7C.for.548-2511.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2511.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2511.gi%7C284087857%7Cgb%7CEFC41524%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.for.584-2448.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.584-2448.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.584-2448.gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084868%7Cgb%7CEFC38556%2E1%7C.for.17759-19557.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.17759-19557.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.17759-19557.gi%7C284084868%7Cgb%7CEFC38556%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096986%7Cgb%7CEFC50613%2E1%7C.for.19699-21620.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.19699-21620.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.19699-21620.gi%7C284096986%7Cgb%7CEFC50613%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085045%7Cgb%7CEFC38732%2E1%7C.for.23527-25661.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.23527-25661.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.23527-25661.gi%7C284085045%7Cgb%7CEFC38732%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:3 now processing 0 total clusters:3 now processing 0 total clusters:3 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:3 now processing 0 total clusters:3 now processing 0 total clusters:3 now processing 0 ...processing 0 of 32 ...processing 1 of 32 ...processing 2 of 32 ...processing 3 of 32 ...processing 4 of 32 ...processing 5 of 32 ...processing 6 of 32 ...processing 7 of 32 ...processing 8 of 32 ...processing 9 of 32 ...processing 10 of 32 ...processing 11 of 32 ...processing 12 of 32 ...processing 13 of 32 ...processing 14 of 32 ...processing 15 of 32 ...processing 16 of 32 ...processing 17 of 32 ...processing 18 of 32 ...processing 19 of 32 ...processing 20 of 32 ...trimming the rest flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:3 now processing 0 total clusters:3 now processing 0 total clusters:3 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:3 now processing 0 ...processing 0 of 20 ...processing 1 of 20 ...processing 2 of 20 ...processing 3 of 20 ...processing 4 of 20 ...processing 5 of 20 ...processing 6 of 20 ...processing 7 of 20 ...processing 8 of 20 ...processing 9 of 20 ...processing 10 of 20 ...processing 11 of 20 ...processing 12 of 20 ...processing 13 of 20 ...processing 14 of 20 ...processing 15 of 20 ...processing 16 of 20 ...processing 17 of 20 ...processing 18 of 20 ...processing 19 of 20 ...trimming the rest ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:3 now processing 0 total clusters:3 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.11382-12267.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.11382-12267.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.11382-12267.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.19898-21420.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.19898-21420.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.19898-21420.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.23726-25661.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.23726-25661.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.23726-25661.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.651-2335.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.651-2335.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.651-2335.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.13449-15575.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.13449-15575.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.13449-15575.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C12 Length: 151965 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:4 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:1 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:5 current j:0 j_size:5 current j:1 j_size:5 current j:2 j_size:5 current j:3 j_size:5 current j:4 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C12.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C12.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:10 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:4 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c728%7C600592206f1.for.1-1027.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.1-1027.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.1-1027.Ar_EST_120301b_c728%7C600592206f1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20258%7Cfq662406.for.1273-3642.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.1273-3642.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.1273-3642.Ar_EST_120301b_c20258%7Cfq662406.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11238%7Cwith.for.3899-5314.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.3899-5314.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.3899-5314.Ar_EST_120301b_c11238%7Cwith.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig287%7Cwith.for.4446-6729.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.4446-6729.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.4446-6729.120301b_Contig287%7Cwith.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4923%7Cconserved.for.5017-6047.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.5017-6047.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.5017-6047.Ar_EST_120301b_rep_c4923%7Cconserved.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c378%7Ccbnf.for.6989-8771.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.6989-8771.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.6989-8771.Ar_EST_120301b_c378%7Ccbnf.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3189%7Cdiaphanous-related.for.7781-9843.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.7781-9843.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.7781-9843.Ar_EST_120301b_c3189%7Cdiaphanous-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1550%7Cdiaphanous-related.for.9665-11058.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.9665-11058.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.9665-11058.Ar_EST_120301b_c1550%7Cdiaphanous-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11195%7Cmagnesium.for.24231-25451.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.24231-25451.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.24231-25451.Ar_EST_120301b_c11195%7Cmagnesium.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18198%7Creplication.for.26279-27668.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.26279-27668.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.26279-27668.Ar_EST_120301b_c18198%7Creplication.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18234%7Cham.for.26021-27411.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.26021-27411.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.26021-27411.Ar_EST_120301b_c18234%7Cham.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13712%7Creplication.for.27060-28313.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.27060-28313.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.27060-28313.Ar_EST_120301b_c13712%7Creplication.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9222%7Creplication.for.28102-29380.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.28102-29380.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.28102-29380.Ar_EST_120301b_c9222%7Creplication.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c527%7CPREDICTED%3A.for.28874-30302.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.28874-30302.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.28874-30302.Ar_EST_120301b_c527%7CPREDICTED%3A.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1382%7Cprotein.for.30821-32102.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.30821-32102.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.30821-32102.Ar_EST_120301b_c1382%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c651%7C40s.for.32109-34724.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.32109-34724.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.32109-34724.Ar_EST_120301b_c651%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15484%7C---NA---.for.32165-33345.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.32165-33345.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.32165-33345.Ar_EST_120301b_c15484%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4119%7Cmhck.for.36707-38256.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.36707-38256.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.36707-38256.Ar_EST_120301b_rep_c4119%7Cmhck.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10138%7Cmhck.for.37169-38246.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.37169-38246.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.37169-38246.Ar_EST_120301b_rep_c10138%7Cmhck.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15620%7Cmhck.for.37202-38226.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.37202-38226.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.37202-38226.Ar_EST_120301b_rep_c15620%7Cmhck.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5645%7Cmhck.for.36710-38207.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.36710-38207.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.36710-38207.Ar_EST_120301b_rep_c5645%7Cmhck.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1100%7Chypothetical.for.38822-40252.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.38822-40252.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.38822-40252.Ar_EST_120301b_c1100%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1316%7Cpeptide.for.40496-42494.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.40496-42494.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.40496-42494.Ar_EST_120301b_c1316%7Cpeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8577%7Cpeptide.for.41083-42501.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.41083-42501.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.41083-42501.Ar_EST_120301b_c8577%7Cpeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11844%7Csymbiotic.for.45845-47323.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.45845-47323.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.45845-47323.Ar_EST_120301b_c11844%7Csymbiotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18328%7Chypothetical.for.47200-48548.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.47200-48548.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.47200-48548.Ar_EST_120301b_c18328%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15267%7C---NA---.for.48658-49505.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.48658-49505.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.48658-49505.Ar_EST_120301b_c15267%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9869%7Ccell.for.51245-52959.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.51245-52959.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.51245-52959.Ar_EST_120301b_c9869%7Ccell.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17405%7Ccell.for.52390-53708.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.52390-53708.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.52390-53708.Ar_EST_120301b_c17405%7Ccell.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2712%7Cprotein.for.53486-55207.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.53486-55207.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.53486-55207.Ar_EST_120301b_c2712%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2244%7Cphosphomannomutase.for.54527-56081.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.54527-56081.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.54527-56081.Ar_EST_120301b_c2244%7Cphosphomannomutase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12102%7C---NA---.for.55329-56645.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.55329-56645.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.55329-56645.Ar_EST_120301b_c12102%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig305%7C78.for.59657-62478.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59657-62478.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59657-62478.120301b_Contig305%7C78.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20111%7Cgtp-binding.for.60232-61394.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.60232-61394.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.60232-61394.Ar_EST_120301b_rep_c20111%7Cgtp-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12799%7Cheat.for.59885-61210.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59885-61210.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59885-61210.Ar_EST_120301b_rep_c12799%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5590%7Cglucose.for.59659-61634.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59659-61634.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59659-61634.Ar_EST_120301b_rep_c5590%7Cglucose.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5697%7Cluminal.for.60638-62264.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.60638-62264.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.60638-62264.Ar_EST_120301b_rep_c5697%7Cluminal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c730%7Cpeptidyl-prolyl.for.62422-63765.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62422-63765.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62422-63765.Ar_EST_120301b_c730%7Cpeptidyl-prolyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16254%7Cbx752014.for.68805-70068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.68805-70068.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.68805-70068.Ar_EST_120301b_c16254%7Cbx752014.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2267%7C3-hydroxyacyl-.for.74154-75649.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.74154-75649.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.74154-75649.Ar_EST_120301b_c2267%7C3-hydroxyacyl-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10600%7Cshort-chain.for.74398-75478.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.74398-75478.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.74398-75478.Ar_EST_120301b_c10600%7Cshort-chain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11679%7C---NA---.for.76004-77182.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.76004-77182.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.76004-77182.Ar_EST_120301b_c11679%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4144%7Czinc.for.77468-79097.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.77468-79097.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.77468-79097.Ar_EST_120301b_rep_c4144%7Czinc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5140%7Cnotch.for.77764-79199.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.77764-79199.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.77764-79199.Ar_EST_120301b_rep_c5140%7Cnotch.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11995%7Csensitivity.for.78617-80004.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.78617-80004.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.78617-80004.Ar_EST_120301b_c11995%7Csensitivity.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18400%7Cprotein.for.83478-84841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.83478-84841.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.83478-84841.Ar_EST_120301b_c18400%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14469%7Cprotein.for.84247-85627.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.84247-85627.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.84247-85627.Ar_EST_120301b_c14469%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3303%7Cmolybdenum.for.91771-93085.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.91771-93085.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.91771-93085.Ar_EST_120301b_c3303%7Cmolybdenum.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig225%7Cmolybdenum.for.90117-92666.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.90117-92666.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.90117-92666.120301b_Contig225%7Cmolybdenum.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10477%7Cpa-phosphatase.for.93514-95251.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.93514-95251.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.93514-95251.Ar_EST_120301b_c10477%7Cpa-phosphatase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9955%7Cmeloidogyne.for.93697-94715.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.93697-94715.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.93697-94715.Ar_EST_120301b_c9955%7Cmeloidogyne.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11581%7Cprotein.for.94100-95577.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.94100-95577.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.94100-95577.Ar_EST_120301b_c11581%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19576%7Cfusca.for.94823-96350.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.94823-96350.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.94823-96350.Ar_EST_120301b_rep_c19576%7Cfusca.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig170%7Cprotein.for.94827-96951.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.94827-96951.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.94827-96951.120301b_Contig170%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7131%7Cferrichrome.for.96302-97853.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96302-97853.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96302-97853.Ar_EST_120301b_rep_c7131%7Cferrichrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13182%7C---NA---.for.96455-97783.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96455-97783.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96455-97783.Ar_EST_120301b_rep_c13182%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c6331%7Ccu619418.for.96329-97526.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96329-97526.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96329-97526.Ar_EST_120301b_c6331%7Ccu619418.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig502%7Cferrichrome.for.96303-97897.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96303-97897.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96303-97897.120301b_Contig502%7Cferrichrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9400%7Cmus06-.for.96344-97727.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96344-97727.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96344-97727.Ar_EST_120301b_rep_c9400%7Cmus06-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12703%7Cdisulfide.for.96546-97781.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96546-97781.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96546-97781.Ar_EST_120301b_rep_c12703%7Cdisulfide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5321%7C-.for.96317-97706.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96317-97706.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96317-97706.Ar_EST_120301b_rep_c5321%7C-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11637%7Ccczb.for.96273-97722.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96273-97722.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96273-97722.Ar_EST_120301b_rep_c11637%7Ccczb.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15753%7Coligopeptide.for.96409-97810.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96409-97810.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96409-97810.Ar_EST_120301b_rep_c15753%7Coligopeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5757%7Cdisulfide.for.96700-97781.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96700-97781.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96700-97781.Ar_EST_120301b_rep_c5757%7Cdisulfide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13003%7Ce3.for.96709-97781.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96709-97781.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96709-97781.Ar_EST_120301b_rep_c13003%7Ce3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6679%7C9787.for.96302-97783.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96302-97783.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96302-97783.Ar_EST_120301b_rep_c6679%7C9787.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12673%7Cubiquitin-protein.for.96641-97769.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96641-97769.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96641-97769.Ar_EST_120301b_rep_c12673%7Cubiquitin-protein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4609%7Cprotein.for.96302-97810.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96302-97810.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96302-97810.Ar_EST_120301b_rep_c4609%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15179%7C---NA---.for.96524-97715.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96524-97715.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96524-97715.Ar_EST_120301b_rep_c15179%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14025%7C---NA---.for.98770-99965.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.98770-99965.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.98770-99965.Ar_EST_120301b_c14025%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig23%7Cprotein.for.100923-102492.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.100923-102492.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.100923-102492.120301b_Contig23%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15597%7Cgpgc_est01533.for.102951-104268.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.102951-104268.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.102951-104268.Ar_EST_120301b_c15597%7Cgpgc_est01533.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14029%7Ccbwo.for.103484-104861.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.103484-104861.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.103484-104861.Ar_EST_120301b_c14029%7Ccbwo.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1391%7Cmonothiol.for.105135-106412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105135-106412.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105135-106412.Ar_EST_120301b_c1391%7Cmonothiol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11256%7Cbipolar.for.107074-109113.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.107074-109113.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.107074-109113.Ar_EST_120301b_c11256%7Cbipolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10687%7C---NA---.for.108374-109747.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.108374-109747.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.108374-109747.Ar_EST_120301b_c10687%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11166%7Cphosphatidylethanolamine.for.110002-111393.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.110002-111393.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.110002-111393.Ar_EST_120301b_c11166%7Cphosphatidylethanolamine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15500%7Cphosphatidylethanolaminen-methyltransferase-lik.for.110586-111697.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.110586-111697.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.110586-111697.Ar_EST_120301b_c15500%7Cphosphatidylethanolaminen-methyltransferase-lik.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig910%7Cphosphatidylethanolaminen-methyltransferase-lik.for.111061-112546.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.111061-112546.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.111061-112546.120301b_Contig910%7Cphosphatidylethanolaminen-methyltransferase-lik.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig127%7Csh3.for.113661-115293.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.113661-115293.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.113661-115293.120301b_Contig127%7Csh3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig422%7Csh3.for.114866-116880.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.114866-116880.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.114866-116880.120301b_Contig422%7Csh3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7745%7Cdedicator.for.116151-118278.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.116151-118278.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.116151-118278.Ar_EST_120301b_c7745%7Cdedicator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8510%7Ctranscription.for.118339-119509.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.118339-119509.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.118339-119509.Ar_EST_120301b_rep_c8510%7Ctranscription.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1228%7Cdedicator.for.117330-119916.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.117330-119916.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.117330-119916.120301b_Contig1228%7Cdedicator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18015%7Cinosine-uridine.for.119625-120965.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.119625-120965.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.119625-120965.Ar_EST_120301b_c18015%7Cinosine-uridine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2577%7Cprotein.for.124415-126298.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.124415-126298.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.124415-126298.Ar_EST_120301b_c2577%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9484%7C1533272.for.125735-126997.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.125735-126997.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.125735-126997.Ar_EST_120301b_c9484%7C1533272.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8218%7Cprotein.for.126743-128790.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.126743-128790.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.126743-128790.Ar_EST_120301b_c8218%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13412%7C---NA---.for.128342-129516.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.128342-129516.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.128342-129516.Ar_EST_120301b_c13412%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19599%7Chec.for.129431-130776.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.129431-130776.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.129431-130776.Ar_EST_120301b_c19599%7Chec.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8962%7Cchromosome.for.129082-130441.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.129082-130441.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.129082-130441.Ar_EST_120301b_c8962%7Cchromosome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2192%7Cphosphatidic.for.135132-136930.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.135132-136930.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.135132-136930.Ar_EST_120301b_c2192%7Cphosphatidic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15138%7Clib4217-068-r1-k1-b1.for.136433-137418.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.136433-137418.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.136433-137418.Ar_EST_120301b_c15138%7Clib4217-068-r1-k1-b1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15263%7C---NA---.for.136631-137561.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.136631-137561.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.136631-137561.Ar_EST_120301b_rep_c15263%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2905%7C---NA---.for.137181-139024.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.137181-139024.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.137181-139024.Ar_EST_120301b_c2905%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig48%7C---NA---.for.138537-140647.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.138537-140647.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.138537-140647.120301b_Contig48%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16578%7Csigmae.for.149378-151076.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.149378-151076.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.149378-151076.Ar_EST_120301b_c16578%7Csigmae.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17410%7Ctetratricopeptide.for.150544-151872.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.150544-151872.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.150544-151872.Ar_EST_120301b_c17410%7Ctetratricopeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18065%7Ctetratricopeptide.for.150570-151821.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.150570-151821.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.150570-151821.Ar_EST_120301b_c18065%7Ctetratricopeptide.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:46 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:43 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:50 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:46 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:26 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:40 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:48 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:36 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093495%7Cgb%7CEFC47133%2E1%7C.for.3581-5384.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.3581-5384.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.3581-5384.gi%7C284093495%7Cgb%7CEFC47133%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090291%7Cgb%7CEFC43943%2E1%7C.for.4015-5161.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.4015-5161.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.4015-5161.gi%7C284090291%7Cgb%7CEFC43943%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084873%7Cgb%7CEFC38561%2E1%7C.for.4027-5218.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.4027-5218.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.4027-5218.gi%7C284084873%7Cgb%7CEFC38561%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097132%7Cgb%7CEFC50759%2E1%7C.for.4027-5155.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.4027-5155.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.4027-5155.gi%7C284097132%7Cgb%7CEFC50759%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091842%7Cgb%7CEFC45487%2E1%7C.for.24248-26025.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.24248-26025.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.24248-26025.gi%7C284091842%7Cgb%7CEFC45487%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092123%7Cgb%7CEFC45766%2E1%7C.for.26817-29382.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.26817-29382.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.26817-29382.gi%7C284092123%7Cgb%7CEFC45766%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083554%7Cgb%7CEFC37256%2E1%7C.for.29087-30486.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.29087-30486.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.29087-30486.gi%7C284083554%7Cgb%7CEFC37256%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084643%7Cgb%7CEFC38333%2E1%7C.for.49616-50949.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.49616-50949.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.49616-50949.gi%7C284084643%7Cgb%7CEFC38333%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C1705642%7Csp%7CP53441%2E1%7CCATR_NAEGR.for.49616-50949.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.49616-50949.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.49616-50949.gi%7C1705642%7Csp%7CP53441%2E1%7CCATR_NAEGR.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C972963%7Cgb%7CAAA75032%2E1%7C.for.49616-50949.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.49616-50949.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.49616-50949.gi%7C972963%7Cgb%7CAAA75032%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091881%7Cgb%7CEFC45525%2E1%7C.for.49598-50883.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.49598-50883.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.49598-50883.gi%7C284091881%7Cgb%7CEFC45525%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086029%7Cgb%7CEFC39708%2E1%7C.for.53762-55182.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.53762-55182.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.53762-55182.gi%7C284086029%7Cgb%7CEFC39708%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094206%7Cgb%7CEFC47841%2E1%7C.for.54553-56087.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.54553-56087.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.54553-56087.gi%7C284094206%7Cgb%7CEFC47841%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092821%7Cgb%7CEFC46461%2E1%7C.for.55858-60224.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.55858-60224.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.55858-60224.gi%7C284092821%7Cgb%7CEFC46461%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083022%7Cgb%7CEFC36730%2E1%7C.for.56017-60167.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.56017-60167.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.56017-60167.gi%7C284083022%7Cgb%7CEFC36730%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093552%7Cgb%7CEFC47189%2E1%7C.for.55819-60119.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.55819-60119.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.55819-60119.gi%7C284093552%7Cgb%7CEFC47189%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085695%7Cgb%7CEFC39377%2E1%7C.for.55768-60191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.55768-60191.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.55768-60191.gi%7C284085695%7Cgb%7CEFC39377%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082133%7Cgb%7CEFC35904%2E1%7C.for.56092-57512.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.56092-57512.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.56092-57512.gi%7C284082133%7Cgb%7CEFC35904%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091446%7Cgb%7CEFC45093%2E1%7C.for.59738-62358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59738-62358.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59738-62358.gi%7C284091446%7Cgb%7CEFC45093%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094819%7Cgb%7CEFC48452%2E1%7C.for.59918-62361.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59918-62361.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59918-62361.gi%7C284094819%7Cgb%7CEFC48452%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084267%7Cgb%7CEFC37961%2E1%7C.for.59996-62367.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59996-62367.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59996-62367.gi%7C284084267%7Cgb%7CEFC37961%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092327%7Cgb%7CEFC45969%2E1%7C.for.59813-62445.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59813-62445.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59813-62445.gi%7C284092327%7Cgb%7CEFC45969%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084526%7Cgb%7CEFC38218%2E1%7C.for.59685-62454.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59685-62454.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59685-62454.gi%7C284084526%7Cgb%7CEFC38218%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082776%7Cgb%7CEFC36488%2E1%7C.for.59762-62358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59762-62358.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59762-62358.gi%7C284082776%7Cgb%7CEFC36488%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085272%7Cgb%7CEFC38957%2E1%7C.for.59762-62358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59762-62358.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59762-62358.gi%7C284085272%7Cgb%7CEFC38957%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085885%7Cgb%7CEFC39565%2E1%7C.for.59762-62358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59762-62358.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59762-62358.gi%7C284085885%7Cgb%7CEFC39565%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085240%7Cgb%7CEFC38925%2E1%7C.for.59762-62358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59762-62358.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59762-62358.gi%7C284085240%7Cgb%7CEFC38925%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C33694258%7Cgb%7CAAQ24867%2E1%7C.for.59726-62358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59726-62358.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59726-62358.gi%7C33694258%7Cgb%7CAAQ24867%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089387%7Cgb%7CEFC43045%2E1%7C.for.59726-62358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59726-62358.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59726-62358.gi%7C284089387%7Cgb%7CEFC43045%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081155%7Cgb%7CEFC35313%2E1%7C.for.62542-63800.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62542-63800.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62542-63800.gi%7C284081155%7Cgb%7CEFC35313%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092983%7Cgb%7CEFC46623%2E1%7C.for.62542-63800.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62542-63800.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62542-63800.gi%7C284092983%7Cgb%7CEFC46623%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085514%7Cgb%7CEFC39197%2E1%7C.for.62548-63833.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62548-63833.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62548-63833.gi%7C284085514%7Cgb%7CEFC39197%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088464%7Cgb%7CEFC42127%2E1%7C.for.62728-63800.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62728-63800.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62728-63800.gi%7C284088464%7Cgb%7CEFC42127%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094883%7Cgb%7CEFC48516%2E1%7C.for.62734-63803.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62734-63803.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62734-63803.gi%7C284094883%7Cgb%7CEFC48516%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086458%7Cgb%7CEFC40134%2E1%7C.for.62734-63800.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62734-63800.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62734-63800.gi%7C284086458%7Cgb%7CEFC40134%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089438%7Cgb%7CEFC43095%2E1%7C.for.74105-75710.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.74105-75710.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.74105-75710.gi%7C284089438%7Cgb%7CEFC43095%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089747%7Cgb%7CEFC43403%2E1%7C.for.82024-83787.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82024-83787.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82024-83787.gi%7C284089747%7Cgb%7CEFC43403%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088991%7Cgb%7CEFC42651%2E1%7C.for.82054-84055.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82054-84055.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82054-84055.gi%7C284088991%7Cgb%7CEFC42651%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092256%7Cgb%7CEFC45899%2E1%7C.for.82090-83787.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82090-83787.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82090-83787.gi%7C284092256%7Cgb%7CEFC45899%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081561%7Cgb%7CEFC35518%2E1%7C.for.82084-83787.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82084-83787.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82084-83787.gi%7C284081561%7Cgb%7CEFC35518%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082242%7Cgb%7CEFC35988%2E1%7C.for.82117-83787.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82117-83787.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82117-83787.gi%7C284082242%7Cgb%7CEFC35988%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094373%7Cgb%7CEFC48007%2E1%7C.for.82021-83802.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82021-83802.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82021-83802.gi%7C284094373%7Cgb%7CEFC48007%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087115%7Cgb%7CEFC40787%2E1%7C.for.82018-83766.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82018-83766.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82018-83766.gi%7C284087115%7Cgb%7CEFC40787%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087025%7Cgb%7CEFC40697%2E1%7C.for.82018-83781.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82018-83781.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82018-83781.gi%7C284087025%7Cgb%7CEFC40697%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093068%7Cgb%7CEFC46707%2E1%7C.for.82087-84040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82087-84040.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82087-84040.gi%7C284093068%7Cgb%7CEFC46707%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091439%7Cgb%7CEFC45086%2E1%7C.for.82030-83805.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82030-83805.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82030-83805.gi%7C284091439%7Cgb%7CEFC45086%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088654%7Cgb%7CEFC42316%2E1%7C.for.82084-83787.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82084-83787.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82084-83787.gi%7C284088654%7Cgb%7CEFC42316%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090654%7Cgb%7CEFC44305%2E1%7C.for.80395-84052.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.80395-84052.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.80395-84052.gi%7C284090654%7Cgb%7CEFC44305%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096156%7Cgb%7CEFC49785%2E1%7C.for.82108-83763.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82108-83763.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82108-83763.gi%7C284096156%7Cgb%7CEFC49785%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093767%7Cgb%7CEFC47404%2E1%7C.for.82003-83778.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82003-83778.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82003-83778.gi%7C284093767%7Cgb%7CEFC47404%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086663%7Cgb%7CEFC40338%2E1%7C.for.85626-86563.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.85626-86563.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.85626-86563.gi%7C284086663%7Cgb%7CEFC40338%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084726%7Cgb%7CEFC38415%2E1%7C.for.90734-91704.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.90734-91704.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.90734-91704.gi%7C284084726%7Cgb%7CEFC38415%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088468%7Cgb%7CEFC42131%2E1%7C.for.92844-94195.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.92844-94195.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.92844-94195.gi%7C284088468%7Cgb%7CEFC42131%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086633%7Cgb%7CEFC40308%2E1%7C.for.94814-96942.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.94814-96942.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.94814-96942.gi%7C284086633%7Cgb%7CEFC40308%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096908%7Cgb%7CEFC50535%2E1%7C.for.105234-106381.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105234-106381.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105234-106381.gi%7C284096908%7Cgb%7CEFC50535%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089747%7Cgb%7CEFC43403%2E1%7C.for.105883-107777.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105883-107777.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105883-107777.gi%7C284089747%7Cgb%7CEFC43403%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082242%7Cgb%7CEFC35988%2E1%7C.for.106003-107663.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.106003-107663.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.106003-107663.gi%7C284082242%7Cgb%7CEFC35988%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094373%7Cgb%7CEFC48007%2E1%7C.for.105853-107771.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105853-107771.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105853-107771.gi%7C284094373%7Cgb%7CEFC48007%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093549%7Cgb%7CEFC47186%2E1%7C.for.105874-108389.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105874-108389.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105874-108389.gi%7C284093549%7Cgb%7CEFC47186%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091439%7Cgb%7CEFC45086%2E1%7C.for.105874-107756.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105874-107756.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105874-107756.gi%7C284091439%7Cgb%7CEFC45086%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085654%7Cgb%7CEFC39336%2E1%7C.for.105868-107768.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105868-107768.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105868-107768.gi%7C284085654%7Cgb%7CEFC39336%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088654%7Cgb%7CEFC42316%2E1%7C.for.105982-107687.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105982-107687.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105982-107687.gi%7C284088654%7Cgb%7CEFC42316%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084300%7Cgb%7CEFC37994%2E1%7C.for.109953-112547.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.109953-112547.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.109953-112547.gi%7C284084300%7Cgb%7CEFC37994%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093284%7Cgb%7CEFC46922%2E1%7C.for.113649-119929.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.113649-119929.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.113649-119929.gi%7C284093284%7Cgb%7CEFC46922%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092928%7Cgb%7CEFC46568%2E1%7C.for.147396-149152.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.147396-149152.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.147396-149152.gi%7C284092928%7Cgb%7CEFC46568%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:18 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:18 now processing 0 ...processing 0 of 11 ...processing 1 of 11 ...processing 2 of 11 ...processing 3 of 11 ...processing 4 of 11 ...processing 5 of 11 ...processing 6 of 11 ...processing 7 of 11 ...processing 8 of 11 ...processing 9 of 11 ...processing 10 of 11 total clusters:18 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:18 now processing 0 total clusters:18 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:16 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:16 now processing 0 ...processing 0 of 11 ...processing 1 of 11 ...processing 2 of 11 ...processing 3 of 11 ...processing 4 of 11 ...processing 5 of 11 ...processing 6 of 11 ...processing 7 of 11 ...processing 8 of 11 ...processing 9 of 11 ...processing 10 of 11 total clusters:16 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:16 now processing 0 total clusters:16 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:16 now processing 0 total clusters:16 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:25 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:25 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.1472-3444.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.1472-3444.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.1472-3444.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.3780-6529.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.3780-6529.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.3780-6529.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.7980-10858.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.7980-10858.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.7980-10858.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.24430-25871.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.24430-25871.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.24430-25871.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.26082-29425.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.26082-29425.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.26082-29425.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.40695-42306.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.40695-42306.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.40695-42306.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.46044-47123.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.46044-47123.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.46044-47123.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.53685-55887.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.53685-55887.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.53685-55887.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.76160-76982.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.76160-76982.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.76160-76982.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.77639-79020.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.77639-79020.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.77639-79020.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.83677-85427.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.83677-85427.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.83677-85427.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.90316-92885.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.90316-92885.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.90316-92885.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.93043-95377.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.93043-95377.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.93043-95377.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.103150-104661.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.103150-104661.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.103150-104661.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.105334-109562.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.105334-109562.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.105334-109562.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.113848-119729.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.113848-119729.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.113848-119729.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.119765-120770.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.119765-120770.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.119765-120770.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.124614-126828.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.124614-126828.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.124614-126828.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.126942-129316.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.126942-129316.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.126942-129316.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.135331-136730.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.135331-136730.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.135331-136730.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.147595-150876.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.147595-150876.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.147595-150876.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.0-827.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.0-827.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.0-827.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.29073-30289.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.29073-30289.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.29073-30289.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.31020-31920.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.31020-31920.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.31020-31920.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.32362-33211.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.32362-33211.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.32362-33211.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.36906-38056.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.36906-38056.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.36906-38056.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.47399-48348.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.47399-48348.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.47399-48348.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.49797-50749.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.49797-50749.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.49797-50749.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.51444-53529.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.51444-53529.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.51444-53529.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.55528-62278.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.55528-62278.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.55528-62278.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.62621-63668.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.62621-63668.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.62621-63668.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.69004-69868.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.69004-69868.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.69004-69868.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.74304-75510.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.74304-75510.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.74304-75510.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.78816-79874.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.78816-79874.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.78816-79874.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.80594-83855.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.80594-83855.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.80594-83855.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.95013-97791.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.95013-97791.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.95013-97791.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.101122-102292.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.101122-102292.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.101122-102292.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.110152-112347.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.110152-112347.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.110152-112347.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.129281-130576.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.129281-130576.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.129281-130576.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.136620-137227.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.136620-137227.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.136620-137227.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/40_0.137380-140447.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/40_0.137380-140447.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/40_0.137380-140447.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/41_0.150743-151676.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/41_0.150743-151676.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/41_0.150743-151676.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C13 Length: 94253 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:3 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:1 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C13.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C13.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3661%7Cddb1-.for.1745-3537.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.1745-3537.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.1745-3537.Ar_EST_120301b_c3661%7Cddb1-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig808%7Carv1-like.for.2831-4363.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.2831-4363.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.2831-4363.120301b_Contig808%7Carv1-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18040%7Chydra.for.8499-9557.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.8499-9557.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.8499-9557.Ar_EST_120301b_c18040%7Chydra.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9342%7Cheat.for.12830-13893.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.12830-13893.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.12830-13893.Ar_EST_120301b_c9342%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12165%7Capoptosis.for.13946-15307.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.13946-15307.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.13946-15307.Ar_EST_120301b_c12165%7Capoptosis.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1412%7Cprotein.for.15657-17513.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.15657-17513.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.15657-17513.Ar_EST_120301b_c1412%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17790%7Ceimeria.for.16740-18028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.16740-18028.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.16740-18028.Ar_EST_120301b_c17790%7Ceimeria.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15312%7Cpredicted.for.17459-19020.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.17459-19020.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.17459-19020.Ar_EST_120301b_c15312%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1936%7Cbeta-catenin-like.for.20721-22008.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.20721-22008.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.20721-22008.Ar_EST_120301b_c1936%7Cbeta-catenin-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16537%7C---NA---.for.21351-22641.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.21351-22641.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.21351-22641.Ar_EST_120301b_c16537%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15992%7C---NA---.for.22668-23828.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.22668-23828.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.22668-23828.Ar_EST_120301b_c15992%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14531%7Chfmidgut6l20.for.23049-24066.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.23049-24066.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.23049-24066.Ar_EST_120301b_c14531%7Chfmidgut6l20.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20424%7Cserine.for.24027-26914.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24027-26914.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24027-26914.Ar_EST_120301b_c20424%7Cserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15621%7C---NA---.for.26261-27545.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.26261-27545.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.26261-27545.Ar_EST_120301b_c15621%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1943%7Cunnamed.for.26952-28306.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.26952-28306.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.26952-28306.Ar_EST_120301b_c1943%7Cunnamed.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3269%7Cvacuolar.for.30273-32149.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.30273-32149.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.30273-32149.Ar_EST_120301b_c3269%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig152%7Cpredicted.for.31784-33714.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.31784-33714.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.31784-33714.120301b_Contig152%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2300%7Cpolysaccharide.for.32622-34650.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.32622-34650.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.32622-34650.Ar_EST_120301b_c2300%7Cpolysaccharide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig777%7Cpredicted.for.34309-36092.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.34309-36092.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.34309-36092.120301b_Contig777%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig734%7Cnucleolar.for.37670-39974.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.37670-39974.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.37670-39974.120301b_Contig734%7Cnucleolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14475%7Cnucleolar.for.38061-39162.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.38061-39162.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.38061-39162.Ar_EST_120301b_c14475%7Cnucleolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10418%7Cdna.for.40207-41624.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.40207-41624.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.40207-41624.Ar_EST_120301b_c10418%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3221%7Cdna.for.41131-43095.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.41131-43095.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.41131-43095.Ar_EST_120301b_c3221%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6645%7Csmall.for.42492-44013.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.42492-44013.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.42492-44013.Ar_EST_120301b_rep_c6645%7Csmall.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6374%7Csmall.for.42392-44097.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.42392-44097.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.42392-44097.Ar_EST_120301b_rep_c6374%7Csmall.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5931%7Cg.for.44474-45483.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.44474-45483.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.44474-45483.Ar_EST_120301b_rep_c5931%7Cg.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4250%7Cg.for.43755-45604.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43755-45604.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43755-45604.Ar_EST_120301b_rep_c4250%7Cg.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1287%7Cbeta.for.45114-47502.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.45114-47502.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.45114-47502.120301b_Contig1287%7Cbeta.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14505%7C---NA---.for.46909-47898.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.46909-47898.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.46909-47898.Ar_EST_120301b_c14505%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8556%7Cglucose.for.49309-50844.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.49309-50844.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.49309-50844.Ar_EST_120301b_c8556%7Cglucose.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18986%7Ctrna.for.49922-51161.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.49922-51161.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.49922-51161.Ar_EST_120301b_c18986%7Ctrna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15011%7Cc-myc-binding.for.50825-51971.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.50825-51971.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.50825-51971.Ar_EST_120301b_c15011%7Cc-myc-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16329%7Cp-type.for.54519-56067.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.54519-56067.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.54519-56067.Ar_EST_120301b_c16329%7Cp-type.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig987%7Cdomain.for.55418-56940.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.55418-56940.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.55418-56940.120301b_Contig987%7Cdomain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c399%7Cp-type.for.57171-58500.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.57171-58500.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.57171-58500.Ar_EST_120301b_c399%7Cp-type.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8892%7Ctransmembrane.for.57005-58272.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.57005-58272.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.57005-58272.Ar_EST_120301b_c8892%7Ctransmembrane.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14963%7Cras.for.57852-59231.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.57852-59231.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.57852-59231.Ar_EST_120301b_c14963%7Cras.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11353%7Cphosphatidylserine.for.62457-63750.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.62457-63750.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.62457-63750.Ar_EST_120301b_c11353%7Cphosphatidylserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9953%7Cphosphatidylserine.for.62954-64357.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.62954-64357.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.62954-64357.Ar_EST_120301b_c9953%7Cphosphatidylserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15385%7Cconserved.for.64079-65170.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.64079-65170.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.64079-65170.Ar_EST_120301b_c15385%7Cconserved.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8704%7Cpeptidyl-trna.for.65595-67100.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.65595-67100.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.65595-67100.Ar_EST_120301b_c8704%7Cpeptidyl-trna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19991%7Ccalcium-dependent.for.66461-67517.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.66461-67517.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.66461-67517.Ar_EST_120301b_rep_c19991%7Ccalcium-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2912%7Ctransmembrane.for.66454-67702.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.66454-67702.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.66454-67702.Ar_EST_120301b_c2912%7Ctransmembrane.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14174%7Cfq834760.for.67005-68053.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.67005-68053.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.67005-68053.Ar_EST_120301b_rep_c14174%7Cfq834760.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19420%7Cactin.for.72710-73909.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.72710-73909.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.72710-73909.Ar_EST_120301b_c19420%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12691%7Calpha.for.73546-74865.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.73546-74865.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.73546-74865.Ar_EST_120301b_c12691%7Calpha.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12365%7Cfp681517.for.74084-75586.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.74084-75586.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.74084-75586.Ar_EST_120301b_c12365%7Cfp681517.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2440%7Cphosphatase.for.78688-80647.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.78688-80647.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.78688-80647.Ar_EST_120301b_c2440%7Cphosphatase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9114%7Cvesicle.for.79865-81214.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.79865-81214.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.79865-81214.Ar_EST_120301b_c9114%7Cvesicle.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig581%7Crcc1.for.82337-85302.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.82337-85302.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.82337-85302.120301b_Contig581%7Crcc1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c339%7Cequilibrative.for.87822-89970.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.87822-89970.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.87822-89970.Ar_EST_120301b_c339%7Cequilibrative.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14139%7Cftfucp0006h12_f_phred13_vc.for.87888-88867.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.87888-88867.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.87888-88867.Ar_EST_120301b_rep_c14139%7Cftfucp0006h12_f_phred13_vc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c457%7Cprotein.for.89276-90684.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.89276-90684.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.89276-90684.Ar_EST_120301b_c457%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18026%7Ccalponin.for.90716-92075.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90716-92075.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90716-92075.Ar_EST_120301b_c18026%7Ccalponin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1402%7Ccalponin.for.90627-92043.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90627-92043.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90627-92043.Ar_EST_120301b_c1402%7Ccalponin.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:47 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:41 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:48 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:46 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:55 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:57 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:44 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:59 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:48 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:32 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081691%7Cgb%7CEFC35595%2E1%7C.for.1746-3262.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.1746-3262.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.1746-3262.gi%7C284081691%7Cgb%7CEFC35595%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081706%7Cgb%7CEFC35605%2E1%7C.for.1746-3073.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.1746-3073.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.1746-3073.gi%7C284081706%7Cgb%7CEFC35605%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081561%7Cgb%7CEFC35518%2E1%7C.for.6248-8048.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6248-8048.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6248-8048.gi%7C284081561%7Cgb%7CEFC35518%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082242%7Cgb%7CEFC35988%2E1%7C.for.6401-8048.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6401-8048.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6401-8048.gi%7C284082242%7Cgb%7CEFC35988%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085654%7Cgb%7CEFC39336%2E1%7C.for.6314-8048.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6314-8048.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6314-8048.gi%7C284085654%7Cgb%7CEFC39336%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091439%7Cgb%7CEFC45086%2E1%7C.for.6284-8048.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6284-8048.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6284-8048.gi%7C284091439%7Cgb%7CEFC45086%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088654%7Cgb%7CEFC42316%2E1%7C.for.6371-8036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6371-8036.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6371-8036.gi%7C284088654%7Cgb%7CEFC42316%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086972%7Cgb%7CEFC40645%2E1%7C.for.6302-7785.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6302-7785.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6302-7785.gi%7C284086972%7Cgb%7CEFC40645%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093767%7Cgb%7CEFC47404%2E1%7C.for.6392-7782.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6392-7782.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6392-7782.gi%7C284093767%7Cgb%7CEFC47404%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090520%7Cgb%7CEFC44171%2E1%7C.for.18491-20354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18491-20354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18491-20354.gi%7C284090520%7Cgb%7CEFC44171%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089855%7Cgb%7CEFC43510%2E1%7C.for.18503-19993.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18503-19993.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18503-19993.gi%7C284089855%7Cgb%7CEFC43510%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089795%7Cgb%7CEFC43450%2E1%7C.for.18542-20120.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18542-20120.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18542-20120.gi%7C284089795%7Cgb%7CEFC43450%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089773%7Cgb%7CEFC43428%2E1%7C.for.18494-20360.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18494-20360.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18494-20360.gi%7C284089773%7Cgb%7CEFC43428%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084776%7Cgb%7CEFC38465%2E1%7C.for.18488-19705.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18488-19705.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18488-19705.gi%7C284084776%7Cgb%7CEFC38465%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087916%7Cgb%7CEFC41583%2E1%7C.for.24189-25692.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25692.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25692.gi%7C284087916%7Cgb%7CEFC41583%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088036%7Cgb%7CEFC41702%2E1%7C.for.24189-25710.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25710.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25710.gi%7C284088036%7Cgb%7CEFC41702%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093143%7Cgb%7CEFC46782%2E1%7C.for.24192-25698.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24192-25698.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24192-25698.gi%7C284093143%7Cgb%7CEFC46782%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085578%7Cgb%7CEFC39261%2E1%7C.for.24338-25701.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24338-25701.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24338-25701.gi%7C284085578%7Cgb%7CEFC39261%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084873%7Cgb%7CEFC38561%2E1%7C.for.24398-25704.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24398-25704.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24398-25704.gi%7C284084873%7Cgb%7CEFC38561%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083993%7Cgb%7CEFC37690%2E1%7C.for.24192-25683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24192-25683.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24192-25683.gi%7C284083993%7Cgb%7CEFC37690%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096422%7Cgb%7CEFC50050%2E1%7C.for.24189-25560.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25560.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25560.gi%7C284096422%7Cgb%7CEFC50050%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088224%7Cgb%7CEFC41889%2E1%7C.for.24192-25692.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24192-25692.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24192-25692.gi%7C284088224%7Cgb%7CEFC41889%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091020%7Cgb%7CEFC44669%2E1%7C.for.24189-25689.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25689.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25689.gi%7C284091020%7Cgb%7CEFC44669%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096438%7Cgb%7CEFC50066%2E1%7C.for.23972-25725.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.23972-25725.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.23972-25725.gi%7C284096438%7Cgb%7CEFC50066%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093840%7Cgb%7CEFC47476%2E1%7C.for.24189-25344.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25344.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25344.gi%7C284093840%7Cgb%7CEFC47476%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088894%7Cgb%7CEFC42555%2E1%7C.for.24180-25692.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24180-25692.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24180-25692.gi%7C284088894%7Cgb%7CEFC42555%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091589%7Cgb%7CEFC45235%2E1%7C.for.24189-25677.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25677.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25677.gi%7C284091589%7Cgb%7CEFC45235%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093839%7Cgb%7CEFC47475%2E1%7C.for.24467-25479.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24467-25479.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24467-25479.gi%7C284093839%7Cgb%7CEFC47475%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090020%7Cgb%7CEFC43674%2E1%7C.for.24189-25677.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25677.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25677.gi%7C284090020%7Cgb%7CEFC43674%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089972%7Cgb%7CEFC43626%2E1%7C.for.28936-30463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.28936-30463.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.28936-30463.gi%7C284089972%7Cgb%7CEFC43626%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086548%7Cgb%7CEFC40224%2E1%7C.for.30291-32151.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.30291-32151.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.30291-32151.gi%7C284086548%7Cgb%7CEFC40224%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087802%7Cgb%7CEFC41469%2E1%7C.for.37878-39943.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.37878-39943.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.37878-39943.gi%7C284087802%7Cgb%7CEFC41469%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085561%7Cgb%7CEFC39244%2E1%7C.for.37914-39934.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.37914-39934.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.37914-39934.gi%7C284085561%7Cgb%7CEFC39244%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087851%7Cgb%7CEFC41518%2E1%7C.for.40044-43012.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.40044-43012.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.40044-43012.gi%7C284087851%7Cgb%7CEFC41518%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097222%7Cgb%7CEFC50849%2E1%7C.for.42455-43652.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.42455-43652.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.42455-43652.gi%7C284097222%7Cgb%7CEFC50849%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086625%7Cgb%7CEFC40300%2E1%7C.for.43749-45472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43749-45472.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43749-45472.gi%7C284086625%7Cgb%7CEFC40300%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083255%7Cgb%7CEFC36960%2E1%7C.for.43749-45616.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43749-45616.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43749-45616.gi%7C284083255%7Cgb%7CEFC36960%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086635%7Cgb%7CEFC40310%2E1%7C.for.43749-45616.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43749-45616.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43749-45616.gi%7C284086635%7Cgb%7CEFC40310%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084290%7Cgb%7CEFC37984%2E1%7C.for.43749-45412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43749-45412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43749-45412.gi%7C284084290%7Cgb%7CEFC37984%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089955%7Cgb%7CEFC43609%2E1%7C.for.45082-47466.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.45082-47466.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.45082-47466.gi%7C284089955%7Cgb%7CEFC43609%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089829%7Cgb%7CEFC43484%2E1%7C.for.48907-51063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.48907-51063.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.48907-51063.gi%7C284089829%7Cgb%7CEFC43484%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089812%7Cgb%7CEFC43467%2E1%7C.for.50900-51968.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.50900-51968.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.50900-51968.gi%7C284089812%7Cgb%7CEFC43467%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088559%7Cgb%7CEFC42222%2E1%7C.for.54523-58496.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.54523-58496.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.54523-58496.gi%7C284088559%7Cgb%7CEFC42222%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083620%7Cgb%7CEFC37321%2E1%7C.for.54475-58466.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.54475-58466.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.54475-58466.gi%7C284083620%7Cgb%7CEFC37321%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095187%7Cgb%7CEFC48819%2E1%7C.for.58139-59411.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58139-59411.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58139-59411.gi%7C284095187%7Cgb%7CEFC48819%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088013%7Cgb%7CEFC41679%2E1%7C.for.58145-59459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58145-59459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58145-59459.gi%7C284088013%7Cgb%7CEFC41679%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088877%7Cgb%7CEFC42538%2E1%7C.for.58079-59411.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58079-59411.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58079-59411.gi%7C284088877%7Cgb%7CEFC42538%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097251%7Cgb%7CEFC50878%2E1%7C.for.58136-59432.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58136-59432.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58136-59432.gi%7C284097251%7Cgb%7CEFC50878%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096640%7Cgb%7CEFC50267%2E1%7C.for.58139-59423.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58139-59423.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58139-59423.gi%7C284096640%7Cgb%7CEFC50267%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095576%7Cgb%7CEFC49206%2E1%7C.for.58136-59444.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58136-59444.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58136-59444.gi%7C284095576%7Cgb%7CEFC49206%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083114%7Cgb%7CEFC36821%2E1%7C.for.62510-64790.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.62510-64790.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.62510-64790.gi%7C284083114%7Cgb%7CEFC36821%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091204%7Cgb%7CEFC44852%2E1%7C.for.66491-67593.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.66491-67593.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.66491-67593.gi%7C284091204%7Cgb%7CEFC44852%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089467%7Cgb%7CEFC43124%2E1%7C.for.70944-72178.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.70944-72178.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.70944-72178.gi%7C284089467%7Cgb%7CEFC43124%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091753%7Cgb%7CEFC45398%2E1%7C.for.78704-80046.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.78704-80046.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.78704-80046.gi%7C284091753%7Cgb%7CEFC45398%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094302%7Cgb%7CEFC47936%2E1%7C.for.78710-80052.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.78710-80052.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.78710-80052.gi%7C284094302%7Cgb%7CEFC47936%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089980%7Cgb%7CEFC43634%2E1%7C.for.78704-80046.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.78704-80046.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.78704-80046.gi%7C284089980%7Cgb%7CEFC43634%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083305%7Cgb%7CEFC37010%2E1%7C.for.90489-92214.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90489-92214.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90489-92214.gi%7C284083305%7Cgb%7CEFC37010%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086189%7Cgb%7CEFC39867%2E1%7C.for.90489-92214.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90489-92214.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90489-92214.gi%7C284086189%7Cgb%7CEFC39867%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082382%7Cgb%7CEFC36106%2E1%7C.for.90489-92214.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90489-92214.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90489-92214.gi%7C284082382%7Cgb%7CEFC36106%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:18 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:20 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 2 ...processing 1 of 2 total clusters:20 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.1925-4163.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.1925-4163.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.1925-4163.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.8698-9606.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.8698-9606.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.8698-9606.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.14145-15107.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.14145-15107.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.14145-15107.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.15856-20160.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.15856-20160.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.15856-20160.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.20920-22441.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.20920-22441.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.20920-22441.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.24226-26714.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.24226-26714.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.24226-26714.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.29135-30263.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.29135-30263.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.29135-30263.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.40243-43899.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.40243-43899.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.40243-43899.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.54674-59244.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.54674-59244.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.54674-59244.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.65794-66900.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.65794-66900.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.65794-66900.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.78887-80447.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.78887-80447.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.78887-80447.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.88021-89770.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.88021-89770.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.88021-89770.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.90909-91875.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.90909-91875.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.90909-91875.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.6570-7836.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.6570-7836.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.6570-7836.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.13029-13693.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.13029-13693.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.13029-13693.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.22867-23866.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.22867-23866.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.22867-23866.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.26460-28106.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.26460-28106.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.26460-28106.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.30472-31951.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.30472-31951.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.30472-31951.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.31983-35892.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.31983-35892.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.31983-35892.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.37681-39774.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.37681-39774.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.37681-39774.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.43948-47698.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.43948-47698.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.43948-47698.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.49106-50961.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.49106-50961.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.49106-50961.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.51024-51988.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.51024-51988.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.51024-51988.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.62656-64590.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.62656-64590.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.62656-64590.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.71143-71978.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.71143-71978.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.71143-71978.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.73745-75386.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.73745-75386.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.73745-75386.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.80064-81014.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.80064-81014.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.80064-81014.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.82536-85102.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.82536-85102.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.82536-85102.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.89475-90484.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.89475-90484.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.89475-90484.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.90688-92014.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.90688-92014.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.90688-92014.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C15 Length: 88282 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:5 current j:0 j_size:5 current j:1 j_size:5 current j:2 j_size:5 current j:3 j_size:5 current j:4 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C15.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C15.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:6 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13711%7C1108770679036.for.1-1127.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.1-1127.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.1-1127.Ar_EST_120301b_c13711%7C1108770679036.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10644%7Cclaudia-husseneder_plate25-d09.for.3186-4275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.3186-4275.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.3186-4275.Ar_EST_120301b_c10644%7Cclaudia-husseneder_plate25-d09.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7062%7Cprotein.for.9348-10762.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9348-10762.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9348-10762.Ar_EST_120301b_rep_c7062%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20489%7Cprotein.for.9348-10472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9348-10472.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9348-10472.Ar_EST_120301b_rep_c20489%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19779%7Cprotein.for.9460-10762.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9460-10762.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9460-10762.Ar_EST_120301b_rep_c19779%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6989%7Cprotein.for.9353-10747.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9353-10747.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9353-10747.Ar_EST_120301b_rep_c6989%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7201%7Cprotein.for.9452-10750.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9452-10750.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9452-10750.Ar_EST_120301b_rep_c7201%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20535%7C40s.for.9635-10758.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9635-10758.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9635-10758.Ar_EST_120301b_rep_c20535%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c847%7Csphingomyelin.for.16096-17482.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.16096-17482.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.16096-17482.Ar_EST_120301b_c847%7Csphingomyelin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15302%7Camp-dependent.for.17102-18099.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.17102-18099.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.17102-18099.Ar_EST_120301b_c15302%7Camp-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8900%7Cpropionate--.for.17355-18785.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.17355-18785.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.17355-18785.Ar_EST_120301b_c8900%7Cpropionate--.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12453%7Cras-related.for.18577-19838.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.18577-19838.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.18577-19838.Ar_EST_120301b_c12453%7Cras-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c101%7Chormone.for.20132-22409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.20132-22409.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.20132-22409.Ar_EST_120301b_c101%7Chormone.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3533%7Clipase.for.21106-23324.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.21106-23324.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.21106-23324.Ar_EST_120301b_c3533%7Clipase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10006%7Cau284314.for.23945-25162.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.23945-25162.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.23945-25162.Ar_EST_120301b_rep_c10006%7Cau284314.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3682%7Cnegative.for.24459-26498.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.24459-26498.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.24459-26498.Ar_EST_120301b_c3682%7Cnegative.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig488%7Cv-type.for.25755-27402.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25755-27402.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25755-27402.120301b_Contig488%7Cv-type.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19184%7Cat3g58730-like.for.25880-27038.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25880-27038.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25880-27038.Ar_EST_120301b_c19184%7Cat3g58730-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12067%7Cfn735362.for.27398-28751.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.27398-28751.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.27398-28751.Ar_EST_120301b_c12067%7Cfn735362.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4543%7Cv-type.for.28132-30143.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.28132-30143.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.28132-30143.Ar_EST_120301b_rep_c4543%7Cv-type.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6117%7Cv-type.for.28143-30220.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.28143-30220.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.28143-30220.Ar_EST_120301b_rep_c6117%7Cv-type.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6452%7Cv-atpase.for.28152-29423.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.28152-29423.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.28152-29423.Ar_EST_120301b_rep_c6452%7Cv-atpase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16840%7Cstructural.for.29632-31068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.29632-31068.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.29632-31068.Ar_EST_120301b_c16840%7Cstructural.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10412%7Cmyosin.for.30668-32164.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.30668-32164.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.30668-32164.Ar_EST_120301b_c10412%7Cmyosin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9051%7Cpoly.for.36033-37417.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.36033-37417.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.36033-37417.Ar_EST_120301b_c9051%7Cpoly.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19738%7Cpoly.for.35801-37206.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.35801-37206.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.35801-37206.Ar_EST_120301b_c19738%7Cpoly.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17368%7C5348_b09_d18z_077.for.36714-37988.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.36714-37988.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.36714-37988.Ar_EST_120301b_c17368%7C5348_b09_d18z_077.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17502%7Csperm.for.44875-46147.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.44875-46147.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.44875-46147.Ar_EST_120301b_c17502%7Csperm.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10104%7Cnbero1ch_t3_003_f01_28apr2006_005.for.46523-47950.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.46523-47950.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.46523-47950.Ar_EST_120301b_c10104%7Cnbero1ch_t3_003_f01_28apr2006_005.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15477%7C010511olea005840ht.for.47761-48883.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.47761-48883.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.47761-48883.Ar_EST_120301b_c15477%7C010511olea005840ht.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12496%7Cmitotic.for.48559-49821.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.48559-49821.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.48559-49821.Ar_EST_120301b_c12496%7Cmitotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig631%7Cabc.for.49870-51710.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.49870-51710.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.49870-51710.120301b_Contig631%7Cabc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig362%7Cabc.for.50804-52767.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.50804-52767.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.50804-52767.120301b_Contig362%7Cabc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig591%7Cactin.for.52012-54049.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52012-54049.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52012-54049.120301b_Contig591%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19773%7Cactin.for.52309-53610.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52309-53610.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52309-53610.Ar_EST_120301b_c19773%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14966%7Cras-related.for.58383-59584.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.58383-59584.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.58383-59584.Ar_EST_120301b_rep_c14966%7Cras-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14539%7Chydra.for.65120-66122.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.65120-66122.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.65120-66122.Ar_EST_120301b_c14539%7Chydra.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13213%7Cintron-binding.for.68211-69663.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.68211-69663.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.68211-69663.Ar_EST_120301b_c13213%7Cintron-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2756%7Csen1p.for.68632-69999.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.68632-69999.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.68632-69999.Ar_EST_120301b_c2756%7Csen1p.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10437%7Cintron-binding.for.69298-70670.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.69298-70670.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.69298-70670.Ar_EST_120301b_c10437%7Cintron-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15450%7Cintron-binding.for.70035-71377.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.70035-71377.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.70035-71377.Ar_EST_120301b_c15450%7Cintron-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1912%7Cpatatin.for.71801-73209.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.71801-73209.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.71801-73209.Ar_EST_120301b_c1912%7Cpatatin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10248%7Cfp871808.for.72440-73995.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.72440-73995.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.72440-73995.Ar_EST_120301b_c10248%7Cfp871808.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11840%7Cmembrane.for.73620-75243.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.73620-75243.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.73620-75243.Ar_EST_120301b_c11840%7Cmembrane.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14999%7Cpredicted.for.81251-82657.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.81251-82657.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.81251-82657.Ar_EST_120301b_c14999%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8376%7Cperoxisomal.for.82450-83986.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.82450-83986.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.82450-83986.Ar_EST_120301b_c8376%7Cperoxisomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19284%7Cagencourt_61881600.for.82251-83486.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.82251-83486.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.82251-83486.Ar_EST_120301b_c19284%7Cagencourt_61881600.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15193%7Cabc.for.84208-85171.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84208-85171.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84208-85171.Ar_EST_120301b_c15193%7Cabc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14003%7Cabc.for.85483-86603.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.85483-86603.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.85483-86603.Ar_EST_120301b_c14003%7Cabc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16443%7Caplysia.for.87251-88282.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.87251-88282.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.87251-88282.Ar_EST_120301b_c16443%7Caplysia.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:44 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:40 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:44 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:50 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:43 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:53 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:60 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:58 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:43 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:36 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093316%7Cgb%7CEFC46954%2E1%7C.for.9415-10717.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9415-10717.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9415-10717.gi%7C284093316%7Cgb%7CEFC46954%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091441%7Cgb%7CEFC45088%2E1%7C.for.10193-12362.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.10193-12362.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.10193-12362.gi%7C284091441%7Cgb%7CEFC45088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091342%7Cgb%7CEFC44989%2E1%7C.for.11672-13489.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.11672-13489.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.11672-13489.gi%7C284091342%7Cgb%7CEFC44989%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088481%7Cgb%7CEFC42144%2E1%7C.for.17102-18870.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.17102-18870.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.17102-18870.gi%7C284088481%7Cgb%7CEFC42144%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084487%7Cgb%7CEFC38179%2E1%7C.for.25758-27251.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25758-27251.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25758-27251.gi%7C284084487%7Cgb%7CEFC38179%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090397%7Cgb%7CEFC44049%2E1%7C.for.25761-27182.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25761-27182.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25761-27182.gi%7C284090397%7Cgb%7CEFC44049%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083009%7Cgb%7CEFC36717%2E1%7C.for.25761-27230.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25761-27230.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25761-27230.gi%7C284083009%7Cgb%7CEFC36717%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092236%7Cgb%7CEFC45879%2E1%7C.for.28469-30195.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.28469-30195.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.28469-30195.gi%7C284092236%7Cgb%7CEFC45879%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096677%7Cgb%7CEFC50304%2E1%7C.for.29853-30916.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.29853-30916.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.29853-30916.gi%7C284096677%7Cgb%7CEFC50304%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091339%7Cgb%7CEFC44986%2E1%7C.for.34890-37451.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.34890-37451.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.34890-37451.gi%7C284091339%7Cgb%7CEFC44986%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089040%7Cgb%7CEFC42700%2E1%7C.for.49909-52718.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.49909-52718.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.49909-52718.gi%7C284089040%7Cgb%7CEFC42700%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082540%7Cgb%7CEFC36256%2E1%7C.for.50258-52748.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.50258-52748.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.50258-52748.gi%7C284082540%7Cgb%7CEFC36256%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089317%7Cgb%7CEFC42975%2E1%7C.for.50602-52748.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.50602-52748.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.50602-52748.gi%7C284089317%7Cgb%7CEFC42975%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093022%7Cgb%7CEFC46662%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284093022%7Cgb%7CEFC46662%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084913%7Cgb%7CEFC38601%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284084913%7Cgb%7CEFC38601%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091907%7Cgb%7CEFC45551%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284091907%7Cgb%7CEFC45551%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081216%7Cgb%7CEFC35341%2E1%7C.for.52748-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52748-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52748-54057.gi%7C284081216%7Cgb%7CEFC35341%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094255%7Cgb%7CEFC47890%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284094255%7Cgb%7CEFC47890%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085698%7Cgb%7CEFC39380%2E1%7C.for.52271-54060.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52271-54060.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52271-54060.gi%7C284085698%7Cgb%7CEFC39380%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082818%7Cgb%7CEFC36529%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284082818%7Cgb%7CEFC36529%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092206%7Cgb%7CEFC45849%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284092206%7Cgb%7CEFC45849%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093050%7Cgb%7CEFC46689%2E1%7C.for.52328-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52328-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52328-54057.gi%7C284093050%7Cgb%7CEFC46689%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081499%7Cgb%7CEFC35479%2E1%7C.for.52325-53676.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52325-53676.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52325-53676.gi%7C284081499%7Cgb%7CEFC35479%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090387%7Cgb%7CEFC44039%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284090387%7Cgb%7CEFC44039%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081169%7Cgb%7CEFC35319%2E1%7C.for.52331-53442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52331-53442.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52331-53442.gi%7C284081169%7Cgb%7CEFC35319%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091080%7Cgb%7CEFC44728%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284091080%7Cgb%7CEFC44728%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C7140539%7Cgb%7CAAF37002%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C7140539%7Cgb%7CAAF37002%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C41016928%7Csp%7CQ9NJV4%2E1%7CACT1_NAEGR.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C41016928%7Csp%7CQ9NJV4%2E1%7CACT1_NAEGR.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089912%7Cgb%7CEFC43567%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284089912%7Cgb%7CEFC43567%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091169%7Cgb%7CEFC44817%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284091169%7Cgb%7CEFC44817%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089027%7Cgb%7CEFC42687%2E1%7C.for.52334-54063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54063.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54063.gi%7C284089027%7Cgb%7CEFC42687%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094182%7Cgb%7CEFC47817%2E1%7C.for.52331-53367.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52331-53367.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52331-53367.gi%7C284094182%7Cgb%7CEFC47817%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092093%7Cgb%7CEFC45736%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284092093%7Cgb%7CEFC45736%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083654%7Cgb%7CEFC37355%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284083654%7Cgb%7CEFC37355%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096006%7Cgb%7CEFC49635%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284096006%7Cgb%7CEFC49635%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093025%7Cgb%7CEFC46665%2E1%7C.for.52556-54066.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52556-54066.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52556-54066.gi%7C284093025%7Cgb%7CEFC46665%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090925%7Cgb%7CEFC44574%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284090925%7Cgb%7CEFC44574%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086629%7Cgb%7CEFC40304%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284086629%7Cgb%7CEFC40304%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095925%7Cgb%7CEFC49554%2E1%7C.for.52331-54066.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52331-54066.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52331-54066.gi%7C284095925%7Cgb%7CEFC49554%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084108%7Cgb%7CEFC37804%2E1%7C.for.52721-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52721-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52721-54057.gi%7C284084108%7Cgb%7CEFC37804%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082060%7Cgb%7CEFC35846%2E1%7C.for.58454-59577.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.58454-59577.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.58454-59577.gi%7C284082060%7Cgb%7CEFC35846%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082068%7Cgb%7CEFC35853%2E1%7C.for.61526-64275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64275.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64275.gi%7C284082068%7Cgb%7CEFC35853%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084087%7Cgb%7CEFC37783%2E1%7C.for.61526-64254.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64254.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64254.gi%7C284084087%7Cgb%7CEFC37783%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089082%7Cgb%7CEFC42742%2E1%7C.for.61514-64407.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61514-64407.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61514-64407.gi%7C284089082%7Cgb%7CEFC42742%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088982%7Cgb%7CEFC42642%2E1%7C.for.61526-64446.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64446.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64446.gi%7C284088982%7Cgb%7CEFC42642%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082474%7Cgb%7CEFC36192%2E1%7C.for.61526-64428.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.gi%7C284082474%7Cgb%7CEFC36192%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082092%7Cgb%7CEFC35872%2E1%7C.for.61481-64428.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61481-64428.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61481-64428.gi%7C284082092%7Cgb%7CEFC35872%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085337%7Cgb%7CEFC39022%2E1%7C.for.61526-64410.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64410.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64410.gi%7C284085337%7Cgb%7CEFC39022%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083266%7Cgb%7CEFC36971%2E1%7C.for.61487-64431.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61487-64431.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61487-64431.gi%7C284083266%7Cgb%7CEFC36971%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093774%7Cgb%7CEFC47410%2E1%7C.for.61526-64284.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64284.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64284.gi%7C284093774%7Cgb%7CEFC47410%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089683%7Cgb%7CEFC43339%2E1%7C.for.61526-64428.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.gi%7C284089683%7Cgb%7CEFC43339%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081057%7Cgb%7CEFC35279%2E1%7C.for.61514-64422.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61514-64422.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61514-64422.gi%7C284081057%7Cgb%7CEFC35279%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082440%7Cgb%7CEFC36159%2E1%7C.for.61592-64470.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61592-64470.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61592-64470.gi%7C284082440%7Cgb%7CEFC36159%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082314%7Cgb%7CEFC36048%2E1%7C.for.61526-64428.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.gi%7C284082314%7Cgb%7CEFC36048%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081028%7Cgb%7CEFC35268%2E1%7C.for.61526-64428.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.gi%7C284081028%7Cgb%7CEFC35268%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093921%7Cgb%7CEFC47557%2E1%7C.for.61526-64428.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.gi%7C284093921%7Cgb%7CEFC47557%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082136%7Cgb%7CEFC35906%2E1%7C.for.61526-64428.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.gi%7C284082136%7Cgb%7CEFC35906%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084171%7Cgb%7CEFC37866%2E1%7C.for.61526-64467.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64467.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64467.gi%7C284084171%7Cgb%7CEFC37866%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080810%7Cgb%7CEFC35195%2E1%7C.for.61640-64254.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61640-64254.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61640-64254.gi%7C284080810%7Cgb%7CEFC35195%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096409%7Cgb%7CEFC50037%2E1%7C.for.81597-82880.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.81597-82880.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.81597-82880.gi%7C284096409%7Cgb%7CEFC50037%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082808%7Cgb%7CEFC36519%2E1%7C.for.82936-84050.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.82936-84050.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.82936-84050.gi%7C284082808%7Cgb%7CEFC36519%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089213%7Cgb%7CEFC42872%2E1%7C.for.83354-88282.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.83354-88282.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.83354-88282.gi%7C284089213%7Cgb%7CEFC42872%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096078%7Cgb%7CEFC49707%2E1%7C.for.84602-86190.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84602-86190.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84602-86190.gi%7C284096078%7Cgb%7CEFC49707%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096910%7Cgb%7CEFC50537%2E1%7C.for.84545-86139.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84545-86139.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84545-86139.gi%7C284096910%7Cgb%7CEFC50537%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088030%7Cgb%7CEFC41696%2E1%7C.for.83441-88282.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.83441-88282.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.83441-88282.gi%7C284088030%7Cgb%7CEFC41696%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094270%7Cgb%7CEFC47905%2E1%7C.for.84614-86178.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84614-86178.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84614-86178.gi%7C284094270%7Cgb%7CEFC47905%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094672%7Cgb%7CEFC48305%2E1%7C.for.84695-86136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84695-86136.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84695-86136.gi%7C284094672%7Cgb%7CEFC48305%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094721%7Cgb%7CEFC48354%2E1%7C.for.84614-86181.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84614-86181.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84614-86181.gi%7C284094721%7Cgb%7CEFC48354%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 27 ...processing 1 of 27 ...processing 2 of 27 ...processing 3 of 27 ...processing 4 of 27 ...processing 5 of 27 ...processing 6 of 27 ...processing 7 of 27 ...processing 8 of 27 ...processing 9 of 27 ...processing 10 of 27 ...processing 11 of 27 ...processing 12 of 27 ...processing 13 of 27 ...processing 14 of 27 ...processing 15 of 27 ...processing 16 of 27 ...processing 17 of 27 ...processing 18 of 27 ...processing 19 of 27 ...processing 20 of 27 ...processing 21 of 27 ...processing 22 of 27 ...processing 23 of 27 ...processing 24 of 27 ...processing 25 of 27 ...processing 26 of 27 total clusters:12 now processing 0 ...processing 0 of 11 ...processing 1 of 11 ...processing 2 of 11 ...processing 3 of 11 ...processing 4 of 11 ...processing 5 of 11 ...processing 6 of 11 ...processing 7 of 11 ...processing 8 of 11 ...processing 9 of 11 ...processing 10 of 11 total clusters:12 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:12 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 26 ...processing 1 of 26 ...processing 2 of 26 ...processing 3 of 26 ...processing 4 of 26 ...processing 5 of 26 ...processing 6 of 26 ...processing 7 of 26 ...processing 8 of 26 ...processing 9 of 26 ...processing 10 of 26 ...processing 11 of 26 ...processing 12 of 26 ...processing 13 of 26 ...processing 14 of 26 ...processing 15 of 26 ...processing 16 of 26 ...processing 17 of 26 ...processing 18 of 26 ...processing 19 of 26 ...processing 20 of 26 ...processing 21 of 26 ...processing 22 of 26 ...processing 23 of 26 ...processing 24 of 26 ...processing 25 of 26 total clusters:12 now processing 0 ...processing 0 of 20 ...processing 1 of 20 ...processing 2 of 20 ...processing 3 of 20 ...processing 4 of 20 ...processing 5 of 20 ...processing 6 of 20 ...processing 7 of 20 ...processing 8 of 20 ...processing 9 of 20 ...processing 10 of 20 ...processing 11 of 20 ...processing 12 of 20 ...processing 13 of 20 ...processing 14 of 20 ...processing 15 of 20 ...processing 16 of 20 ...processing 17 of 20 ...processing 18 of 20 ...processing 19 of 20 ...trimming the rest total clusters:12 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:19 now processing 0 total clusters:19 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:19 now processing 0 total clusters:19 now processing 0 total clusters:19 now processing 0 total clusters:19 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:19 now processing 0 total clusters:19 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:19 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:19 now processing 0 total clusters:19 now processing 0 total clusters:19 now processing 0 total clusters:19 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:19 now processing 0 total clusters:19 now processing 0 total clusters:19 now processing 0 total clusters:19 now processing 0 total clusters:19 now processing 0 total clusters:19 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:17 now processing 0 ...processing 0 of 20 ...processing 1 of 20 ...processing 2 of 20 ...processing 3 of 20 ...processing 4 of 20 ...processing 5 of 20 ...processing 6 of 20 ...processing 7 of 20 ...processing 8 of 20 ...processing 9 of 20 ...processing 10 of 20 ...processing 11 of 20 ...processing 12 of 20 ...processing 13 of 20 ...processing 14 of 20 ...processing 15 of 20 ...processing 16 of 20 ...processing 17 of 20 ...processing 18 of 20 ...processing 19 of 20 ...trimming the rest ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.65-927.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.65-927.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.65-927.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.10392-12162.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.10392-12162.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.10392-12162.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.16295-17282.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.16295-17282.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.16295-17282.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.18776-19638.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.18776-19638.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.18776-19638.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.24658-27202.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.24658-27202.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.24658-27202.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.27597-30020.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.27597-30020.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.27597-30020.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.35089-37251.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.35089-37251.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.35089-37251.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.45074-45947.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.45074-45947.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.45074-45947.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.46722-47750.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.46722-47750.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.46722-47750.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.48758-49621.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.48758-49621.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.48758-49621.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.50069-52569.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.50069-52569.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.50069-52569.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.58572-59384.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.58572-59384.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.58572-59384.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.72000-75043.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.72000-75043.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.72000-75043.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.81796-83836.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.81796-83836.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.81796-83836.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.9547-10562.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.9547-10562.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.9547-10562.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.11871-13289.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.11871-13289.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.11871-13289.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.17554-18622.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.17554-18622.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.17554-18622.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.20331-23124.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.20331-23124.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.20331-23124.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.29831-31964.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.29831-31964.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.29831-31964.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.36913-37788.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.36913-37788.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.36913-37788.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.47960-48712.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.47960-48712.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.47960-48712.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.52211-53875.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.52211-53875.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.52211-53875.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.61680-64294.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.61680-64294.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.61680-64294.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.68410-71177.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.68410-71177.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.68410-71177.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.81450-82457.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.81450-82457.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.81450-82457.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.83553-88154.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.83553-88154.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.83553-88154.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C16 Length: 52806 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:1 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C16.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C16.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig74%7Cras.for.4626-7621.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.4626-7621.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.4626-7621.120301b_Contig74%7Cras.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16859%7Cras.for.2491-3652.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.2491-3652.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.2491-3652.Ar_EST_120301b_c16859%7Cras.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1186%7Csecreted.for.2145-4070.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.2145-4070.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.2145-4070.120301b_Contig1186%7Csecreted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20200%7Cg.for.5582-6832.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.5582-6832.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.5582-6832.Ar_EST_120301b_rep_c20200%7Cg.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7704%7C40s.for.2996-5442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.2996-5442.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.2996-5442.Ar_EST_120301b_c7704%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14467%7Ccu605174.for.8339-9523.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.8339-9523.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.8339-9523.Ar_EST_120301b_rep_c14467%7Ccu605174.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7171%7Cly_yit_dp1235.for.8342-9199.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.8342-9199.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.8342-9199.Ar_EST_120301b_rep_c7171%7Cly_yit_dp1235.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16260%7Cmethyltransferase.for.11915-13043.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.11915-13043.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.11915-13043.Ar_EST_120301b_c16260%7Cmethyltransferase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c612%7C3.for.13756-15898.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.13756-15898.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.13756-15898.Ar_EST_120301b_c612%7C3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14163%7Cheterotrimeric.for.14536-15940.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14536-15940.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14536-15940.Ar_EST_120301b_c14163%7Cheterotrimeric.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1012%7Cras-related.for.16093-17594.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.16093-17594.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.16093-17594.120301b_Contig1012%7Cras-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9994%7CFP067752.for.20020-21546.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.20020-21546.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.20020-21546.Ar_EST_120301b_c9994%7CFP067752.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19755%7C---NA---.for.19886-21213.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.19886-21213.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.19886-21213.Ar_EST_120301b_c19755%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1652%7Cpredicted.for.22962-24406.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.22962-24406.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.22962-24406.Ar_EST_120301b_c1652%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12976%7Cdym_chick.for.24127-25530.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.24127-25530.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.24127-25530.Ar_EST_120301b_c12976%7Cdym_chick.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4302%7Cnad-dependent.for.27610-29630.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.27610-29630.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.27610-29630.Ar_EST_120301b_rep_c4302%7Cnad-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4959%7Cnad-dependent.for.27638-29648.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.27638-29648.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.27638-29648.Ar_EST_120301b_rep_c4959%7Cnad-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13941%7Cnucleotide.for.28457-29556.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.28457-29556.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.28457-29556.Ar_EST_120301b_rep_c13941%7Cnucleotide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14530%7Chypothetical.for.29417-30831.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.29417-30831.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.29417-30831.Ar_EST_120301b_c14530%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1221%7Cgateway.for.31131-32485.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.31131-32485.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.31131-32485.Ar_EST_120301b_c1221%7Cgateway.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2400%7Ctransmembrane.for.31863-33502.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.31863-33502.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.31863-33502.Ar_EST_120301b_c2400%7Ctransmembrane.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16743%7Catp.for.36527-37979.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.36527-37979.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.36527-37979.Ar_EST_120301b_c16743%7Catp.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3646%7Cisoform.for.35541-37378.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.35541-37378.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.35541-37378.Ar_EST_120301b_c3646%7Cisoform.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16709%7C---NA---.for.38655-40235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.38655-40235.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.38655-40235.Ar_EST_120301b_c16709%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10548%7Cpopulus.for.38111-39685.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.38111-39685.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.38111-39685.Ar_EST_120301b_c10548%7Cpopulus.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12154%7Ctransposase.for.41740-43156.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.41740-43156.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.41740-43156.Ar_EST_120301b_c12154%7Ctransposase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13040%7Ccnsn01-f-004961-501.for.44089-45039.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.44089-45039.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.44089-45039.Ar_EST_120301b_c13040%7Ccnsn01-f-004961-501.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13845%7C---NA---.for.49598-50912.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.49598-50912.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.49598-50912.Ar_EST_120301b_c13845%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13073%7Cccashart06b08r.for.50532-51611.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.50532-51611.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.50532-51611.Ar_EST_120301b_c13073%7Cccashart06b08r.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13711%7C1108770679036.for.51968-52806.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.51968-52806.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.51968-52806.Ar_EST_120301b_c13711%7C1108770679036.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:6 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:12 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:5 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:7 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:6 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:6 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:9 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:6 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:11 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:6 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081967%7Cgb%7CEFC35778%2E1%7C.for.6355-7489.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.6355-7489.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.6355-7489.gi%7C284081967%7Cgb%7CEFC35778%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092652%7Cgb%7CEFC46293%2E1%7C.for.14705-16123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14705-16123.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14705-16123.gi%7C284092652%7Cgb%7CEFC46293%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084915%7Cgb%7CEFC38603%2E1%7C.for.14639-16114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14639-16114.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14639-16114.gi%7C284084915%7Cgb%7CEFC38603%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084712%7Cgb%7CEFC38402%2E1%7C.for.14705-16123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14705-16123.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14705-16123.gi%7C284084712%7Cgb%7CEFC38402%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090770%7Cgb%7CEFC44420%2E1%7C.for.14678-16123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14678-16123.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14678-16123.gi%7C284090770%7Cgb%7CEFC44420%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083518%7Cgb%7CEFC37220%2E1%7C.for.14693-16123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14693-16123.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14693-16123.gi%7C284083518%7Cgb%7CEFC37220%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095980%7Cgb%7CEFC49609%2E1%7C.for.14738-16123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14738-16123.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14738-16123.gi%7C284095980%7Cgb%7CEFC49609%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091782%7Cgb%7CEFC45427%2E1%7C.for.14705-15853.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14705-15853.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14705-15853.gi%7C284091782%7Cgb%7CEFC45427%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085503%7Cgb%7CEFC39186%2E1%7C.for.14732-16123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14732-16123.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14732-16123.gi%7C284085503%7Cgb%7CEFC39186%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093388%7Cgb%7CEFC47026%2E1%7C.for.14798-15723.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14798-15723.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14798-15723.gi%7C284093388%7Cgb%7CEFC47026%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095344%7Cgb%7CEFC48975%2E1%7C.for.14705-16105.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14705-16105.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14705-16105.gi%7C284095344%7Cgb%7CEFC48975%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095754%7Cgb%7CEFC49384%2E1%7C.for.14693-16105.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14693-16105.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14693-16105.gi%7C284095754%7Cgb%7CEFC49384%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084832%7Cgb%7CEFC38521%2E1%7C.for.16083-17862.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.16083-17862.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.16083-17862.gi%7C284084832%7Cgb%7CEFC38521%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096643%7Cgb%7CEFC50270%2E1%7C.for.16077-17862.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.16077-17862.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.16077-17862.gi%7C284096643%7Cgb%7CEFC50270%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097000%7Cgb%7CEFC50627%2E1%7C.for.17195-19077.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.17195-19077.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.17195-19077.gi%7C284097000%7Cgb%7CEFC50627%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095112%7Cgb%7CEFC48744%2E1%7C.for.25157-28242.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.25157-28242.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.25157-28242.gi%7C284095112%7Cgb%7CEFC48744%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091376%7Cgb%7CEFC45023%2E1%7C.for.27629-29588.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.27629-29588.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.27629-29588.gi%7C284091376%7Cgb%7CEFC45023%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:5 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:5 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:5 now processing 0 total clusters:5 now processing 0 total clusters:5 now processing 0 in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:4 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:4 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:4 now processing 0 total clusters:4 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:10 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:10 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:10 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.8491-9323.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.8491-9323.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.8491-9323.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.20085-21013.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.20085-21013.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.20085-21013.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.23073-25330.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.23073-25330.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.23073-25330.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.29616-32285.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.29616-32285.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.29616-32285.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.35740-37784.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.35740-37784.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.35740-37784.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.38304-40035.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.38304-40035.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.38304-40035.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.52167-52806.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.52167-52806.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.52167-52806.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.2344-7421.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.2344-7421.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.2344-7421.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.14735-15923.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.14735-15923.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.14735-15923.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.16276-18877.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.16276-18877.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.16276-18877.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.25356-29430.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.25356-29430.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.25356-29430.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.32062-33302.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.32062-33302.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.32062-33302.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.41939-42958.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.41939-42958.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.41939-42958.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.44288-44861.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.44288-44861.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.44288-44861.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.49797-50712.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.49797-50712.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.49797-50712.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C17 Length: 92022 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:6 current j:0 j_size:6 current j:1 j_size:6 current j:2 j_size:6 current j:3 j_size:6 current j:4 j_size:6 current j:5 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C17.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C17.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14841%7C---NA---.for.1416-2440.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.1416-2440.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.1416-2440.Ar_EST_120301b_c14841%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12481%7Cpt11-c2-300-003-e01-.for.2068-3358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.2068-3358.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.2068-3358.Ar_EST_120301b_c12481%7Cpt11-c2-300-003-e01-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c152%7Cdisulfide.for.1875-3275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.1875-3275.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.1875-3275.Ar_EST_120301b_c152%7Cdisulfide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12224%7Cproteasome-associated.for.2749-4281.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.2749-4281.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.2749-4281.Ar_EST_120301b_c12224%7Cproteasome-associated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3338%7Cproteasome-associated.for.3465-5694.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.3465-5694.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.3465-5694.Ar_EST_120301b_c3338%7Cproteasome-associated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16010%7Cproteasome-associated.for.5217-6552.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.5217-6552.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.5217-6552.Ar_EST_120301b_c16010%7Cproteasome-associated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14875.for.5785-6871.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.5785-6871.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.5785-6871.Ar_EST_120301b_c14875.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18129%7Cheat.for.7223-8542.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.7223-8542.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.7223-8542.Ar_EST_120301b_c18129%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15944%7C603773189f1.for.10823-11971.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.10823-11971.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.10823-11971.Ar_EST_120301b_c15944%7C603773189f1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11028%7Cauxin.for.11347-13098.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.11347-13098.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.11347-13098.Ar_EST_120301b_c11028%7Cauxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3067%7Crna-binding.for.12713-14508.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.12713-14508.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.12713-14508.Ar_EST_120301b_c3067%7Crna-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15013%7Cnacnu32to.for.16800-18175.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.16800-18175.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.16800-18175.Ar_EST_120301b_c15013%7Cnacnu32to.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3173%7Cconserved.for.16013-17915.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.16013-17915.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.16013-17915.Ar_EST_120301b_c3173%7Cconserved.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8941%7Cmrna-decapping.for.21273-22620.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.21273-22620.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.21273-22620.Ar_EST_120301b_c8941%7Cmrna-decapping.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8091%7Cgram.for.25540-27155.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.25540-27155.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.25540-27155.Ar_EST_120301b_c8091%7Cgram.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9708%7Cprotein.for.26626-28000.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.26626-28000.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.26626-28000.Ar_EST_120301b_c9708%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2949%7Cprotein.for.27412-29105.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.27412-29105.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.27412-29105.Ar_EST_120301b_c2949%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17989%7Cgolgin.for.31210-32198.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.31210-32198.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.31210-32198.Ar_EST_120301b_c17989%7Cgolgin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16259%7Cpolyadenylate-binding.for.30808-32056.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.30808-32056.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.30808-32056.Ar_EST_120301b_c16259%7Cpolyadenylate-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2387%7Cacyl-.for.31890-33234.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.31890-33234.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.31890-33234.Ar_EST_120301b_c2387%7Cacyl-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13344%7Ctranscription.for.33215-34470.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33215-34470.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33215-34470.Ar_EST_120301b_rep_c13344%7Ctranscription.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4140%7Ctranscription.for.33145-34529.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33145-34529.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33145-34529.Ar_EST_120301b_rep_c4140%7Ctranscription.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18913%7Ctranscription.for.33177-34321.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33177-34321.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33177-34321.Ar_EST_120301b_rep_c18913%7Ctranscription.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8510%7Ctranscription.for.33317-34420.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33317-34420.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33317-34420.Ar_EST_120301b_rep_c8510%7Ctranscription.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15808%7Cnascent.for.33280-34495.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33280-34495.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33280-34495.Ar_EST_120301b_rep_c15808%7Cnascent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9214%7Ccoiled-coil.for.39058-40408.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.39058-40408.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.39058-40408.Ar_EST_120301b_c9214%7Ccoiled-coil.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19600%7Ccoiled-coil.for.38864-40377.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.38864-40377.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.38864-40377.Ar_EST_120301b_c19600%7Ccoiled-coil.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18901%7Cdna.for.39766-41076.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.39766-41076.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.39766-41076.Ar_EST_120301b_c18901%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3719%7Cddb1-.for.40713-42856.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.40713-42856.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.40713-42856.Ar_EST_120301b_c3719%7Cddb1-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18822%7Cauf_.for.43214-44648.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.43214-44648.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.43214-44648.Ar_EST_120301b_c18822%7Cauf_.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8190%7Ctilapia.for.43181-44516.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.43181-44516.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.43181-44516.Ar_EST_120301b_c8190%7Ctilapia.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13048%7Ccbs.for.45243-46586.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.45243-46586.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.45243-46586.Ar_EST_120301b_c13048%7Ccbs.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3085%7Cprotein.for.44775-46572.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.44775-46572.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.44775-46572.Ar_EST_120301b_c3085%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19474%7Ccbs.for.45854-47315.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.45854-47315.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.45854-47315.Ar_EST_120301b_c19474%7Ccbs.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3208%7Cdihydrolipoamide.for.46625-48544.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.46625-48544.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.46625-48544.Ar_EST_120301b_c3208%7Cdihydrolipoamide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1995%7Cperoxidase-like.for.52915-54181.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.52915-54181.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.52915-54181.Ar_EST_120301b_c1995%7Cperoxidase-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16093%7Csmall.for.53639-54991.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.53639-54991.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.53639-54991.Ar_EST_120301b_c16093%7Csmall.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10212%7Ccv03-normalized.for.57094-58040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.57094-58040.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.57094-58040.Ar_EST_120301b_c10212%7Ccv03-normalized.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11832%7Ctranscriptional.for.59175-60514.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.59175-60514.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.59175-60514.Ar_EST_120301b_c11832%7Ctranscriptional.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9386%7Caldehyde.for.60398-61477.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.60398-61477.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.60398-61477.Ar_EST_120301b_rep_c9386%7Caldehyde.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5837%7Cubiquitin-ribosomal.for.60397-61481.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.60397-61481.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.60397-61481.Ar_EST_120301b_rep_c5837%7Cubiquitin-ribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10610%7Carsenical.for.67383-68847.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.67383-68847.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.67383-68847.Ar_EST_120301b_c10610%7Carsenical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14571%7Cgrowth.for.81450-82610.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.81450-82610.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.81450-82610.Ar_EST_120301b_c14571%7Cgrowth.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8106%7Cglycosyl.for.87454-89144.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.87454-89144.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.87454-89144.Ar_EST_120301b_c8106%7Cglycosyl.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:25 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:22 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:19 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:22 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:34 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:23 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:29 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:28 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:30 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:26 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096446%7Cgb%7CEFC50074%2E1%7C.for.21443-22914.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.21443-22914.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.21443-22914.gi%7C284096446%7Cgb%7CEFC50074%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088239%7Cgb%7CEFC41904%2E1%7C.for.21428-22911.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.21428-22911.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.21428-22911.gi%7C284088239%7Cgb%7CEFC41904%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088728%7Cgb%7CEFC42390%2E1%7C.for.26581-27899.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.26581-27899.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.26581-27899.gi%7C284088728%7Cgb%7CEFC42390%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093986%7Cgb%7CEFC47622%2E1%7C.for.27297-29125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.27297-29125.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.27297-29125.gi%7C284093986%7Cgb%7CEFC47622%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083389%7Cgb%7CEFC37093%2E1%7C.for.40629-42867.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.40629-42867.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.40629-42867.gi%7C284083389%7Cgb%7CEFC37093%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088661%7Cgb%7CEFC42323%2E1%7C.for.42233-43607.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.42233-43607.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.42233-43607.gi%7C284088661%7Cgb%7CEFC42323%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084450%7Cgb%7CEFC38143%2E1%7C.for.44718-47219.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.44718-47219.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.44718-47219.gi%7C284084450%7Cgb%7CEFC38143%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087263%7Cgb%7CEFC40934%2E1%7C.for.44718-47219.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.44718-47219.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.44718-47219.gi%7C284087263%7Cgb%7CEFC40934%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094712%7Cgb%7CEFC48345%2E1%7C.for.46566-48732.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.46566-48732.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.46566-48732.gi%7C284094712%7Cgb%7CEFC48345%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C260677510%7Cgb%7CACX47992%2E1%7C.for.46575-48732.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.46575-48732.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.46575-48732.gi%7C260677510%7Cgb%7CACX47992%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C42795417%7Cgb%7CAAS46035%2E1%7C.for.49226-51258.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.49226-51258.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.49226-51258.gi%7C42795417%7Cgb%7CAAS46035%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092604%7Cgb%7CEFC46245%2E1%7C.for.48980-51279.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.48980-51279.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.48980-51279.gi%7C284092604%7Cgb%7CEFC46245%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091110%7Cgb%7CEFC44758%2E1%7C.for.54320-55659.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.54320-55659.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.54320-55659.gi%7C284091110%7Cgb%7CEFC44758%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087591%7Cgb%7CEFC41260%2E1%7C.for.61695-63855.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.61695-63855.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.61695-63855.gi%7C284087591%7Cgb%7CEFC41260%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090807%7Cgb%7CEFC44457%2E1%7C.for.61689-64185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.61689-64185.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.61689-64185.gi%7C284090807%7Cgb%7CEFC44457%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087960%7Cgb%7CEFC41626%2E1%7C.for.61695-64170.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.61695-64170.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.61695-64170.gi%7C284087960%7Cgb%7CEFC41626%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091709%7Cgb%7CEFC45354%2E1%7C.for.61689-64167.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.61689-64167.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.61689-64167.gi%7C284091709%7Cgb%7CEFC45354%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086829%7Cgb%7CEFC40503%2E1%7C.for.67184-69094.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.67184-69094.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.67184-69094.gi%7C284086829%7Cgb%7CEFC40503%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:10 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:10 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:22 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.2074-3158.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.2074-3158.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.2074-3158.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.27496-28925.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.27496-28925.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.27496-28925.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.31007-31856.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.31007-31856.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.31007-31856.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.33344-34338.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.33344-34338.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.33344-34338.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.39257-40208.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.39257-40208.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.39257-40208.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.40828-43407.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.40828-43407.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.40828-43407.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.44917-48532.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.44917-48532.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.44917-48532.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.53095-53981.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.53095-53981.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.53095-53981.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.67383-68894.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.67383-68894.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.67383-68894.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.81649-82410.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.81649-82410.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.81649-82410.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.1608-2246.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.1608-2246.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.1608-2246.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.2940-8342.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.2940-8342.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.2940-8342.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.11022-12898.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.11022-12898.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.11022-12898.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.12912-14308.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.12912-14308.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.12912-14308.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.16198-17982.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.16198-17982.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.16198-17982.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.21437-22714.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.21437-22714.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.21437-22714.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.25739-27800.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.25739-27800.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.25739-27800.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.32089-33069.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.32089-33069.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.32089-33069.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.39063-40876.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.39063-40876.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.39063-40876.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.43380-44448.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.43380-44448.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.43380-44448.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.49179-51079.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.49179-51079.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.49179-51079.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.53834-54791.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.53834-54791.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.53834-54791.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.57293-57840.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.57293-57840.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.57293-57840.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.59374-60314.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.59374-60314.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.59374-60314.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.61888-63967.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.61888-63967.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.61888-63967.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.87653-88944.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.87653-88944.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.87653-88944.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C18 Length: 97524 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C18.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C18.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig956%7Cist1.for.1393-3113.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.1393-3113.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.1393-3113.120301b_Contig956%7Cist1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c207%7Ccyclophilin.for.2372-3908.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.2372-3908.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.2372-3908.Ar_EST_120301b_c207%7Ccyclophilin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9680%7Csialate.for.2871-4336.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.2871-4336.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.2871-4336.Ar_EST_120301b_c9680%7Csialate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11909%7Cpredicted.for.10205-11801.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.10205-11801.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.10205-11801.Ar_EST_120301b_c11909%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17317%7Chypothetical.for.12208-13469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.12208-13469.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.12208-13469.Ar_EST_120301b_c17317%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1848%7Cserine.for.13277-15049.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.13277-15049.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.13277-15049.Ar_EST_120301b_c1848%7Cserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12449%7Cpeptidase.for.13848-14943.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.13848-14943.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.13848-14943.Ar_EST_120301b_c12449%7Cpeptidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14570%7Cserine.for.13254-14383.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.13254-14383.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.13254-14383.Ar_EST_120301b_c14570%7Cserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13149%7Csodium%3Asolute.for.14314-15606.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.14314-15606.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.14314-15606.Ar_EST_120301b_c13149%7Csodium%3Asolute.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13340%7Cjle00002651.for.17297-18594.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.17297-18594.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.17297-18594.Ar_EST_120301b_c13340%7Cjle00002651.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3112%7Cprotein.for.21072-23154.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.21072-23154.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.21072-23154.Ar_EST_120301b_c3112%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4384%7Casparaginyl-trna.for.23099-25361.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.23099-25361.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.23099-25361.Ar_EST_120301b_rep_c4384%7Casparaginyl-trna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6569%7Casparaginyl-trna.for.23655-25076.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.23655-25076.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.23655-25076.Ar_EST_120301b_rep_c6569%7Casparaginyl-trna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19437%7Cphosphatidylserine.for.25508-26638.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.25508-26638.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.25508-26638.Ar_EST_120301b_c19437%7Cphosphatidylserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7907%7Cphosphatidylserine.for.25067-26654.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.25067-26654.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.25067-26654.Ar_EST_120301b_c7907%7Cphosphatidylserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19136%7Cphosphatidylserine.for.25501-26838.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.25501-26838.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.25501-26838.Ar_EST_120301b_c19136%7Cphosphatidylserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12567%7Cbp914876.for.26854-28102.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.26854-28102.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.26854-28102.Ar_EST_120301b_c12567%7Cbp914876.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c474%7Crasgef.for.26750-28162.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.26750-28162.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.26750-28162.Ar_EST_120301b_c474%7Crasgef.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10283%7Crasgef.for.27456-29229.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.27456-29229.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.27456-29229.Ar_EST_120301b_c10283%7Crasgef.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1820%7Crasgef.for.28529-29887.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.28529-29887.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.28529-29887.Ar_EST_120301b_c1820%7Crasgef.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1034%7C6-phosphogluconate.for.31048-33315.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31048-33315.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31048-33315.120301b_Contig1034%7C6-phosphogluconate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14395%7Cacrasis.for.31744-32774.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31744-32774.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31744-32774.Ar_EST_120301b_c14395%7Cacrasis.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14855%7C6-phosphogluconate.for.31784-32819.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31784-32819.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31784-32819.Ar_EST_120301b_rep_c14855%7C6-phosphogluconate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig595%7Cprefoldin.for.32824-34284.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.32824-34284.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.32824-34284.120301b_Contig595%7Cprefoldin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9174%7Cig.for.38880-40636.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.38880-40636.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.38880-40636.Ar_EST_120301b_c9174%7Cig.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15067%7C6-phosphogluconolactonase.for.42321-43789.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.42321-43789.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.42321-43789.Ar_EST_120301b_c15067%7C6-phosphogluconolactonase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1603%7Coxidoreductase.for.43514-45581.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.43514-45581.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.43514-45581.Ar_EST_120301b_c1603%7Coxidoreductase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5690%7Czinc-binding.for.43646-45239.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.43646-45239.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.43646-45239.Ar_EST_120301b_rep_c5690%7Czinc-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10070%7Cprotein.for.44178-45537.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.44178-45537.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.44178-45537.Ar_EST_120301b_rep_c10070%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17326%7Cforkhead.for.47118-48572.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.47118-48572.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.47118-48572.Ar_EST_120301b_c17326%7Cforkhead.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18313%7Csh3-domain.for.48128-49291.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.48128-49291.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.48128-49291.Ar_EST_120301b_c18313%7Csh3-domain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15882%7Cprotein.for.48571-49859.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.48571-49859.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.48571-49859.Ar_EST_120301b_c15882%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9855%7Cunq88-.for.49262-51251.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.49262-51251.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.49262-51251.Ar_EST_120301b_rep_c9855%7Cunq88-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5404%7Cunq88-.for.49663-51470.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.49663-51470.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.49663-51470.Ar_EST_120301b_rep_c5404%7Cunq88-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14063%7Cvir_sct982_g01_jp7_4g1_002.for.51685-52680.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.51685-52680.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.51685-52680.Ar_EST_120301b_c14063%7Cvir_sct982_g01_jp7_4g1_002.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15610%7Cautophagy.for.52013-53304.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.52013-53304.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.52013-53304.Ar_EST_120301b_c15610%7Cautophagy.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9411%7C%28%2B%29-neomenthol.for.55320-56583.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.55320-56583.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.55320-56583.Ar_EST_120301b_c9411%7C%28%2B%29-neomenthol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11031%7Cdinucleoside.for.56198-57706.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.56198-57706.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.56198-57706.Ar_EST_120301b_c11031%7Cdinucleoside.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15310%7Cprotein.for.57832-59418.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.57832-59418.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.57832-59418.Ar_EST_120301b_c15310%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15%7Chypothetical.for.59021-60766.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.59021-60766.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.59021-60766.Ar_EST_120301b_c15%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11961%7Cabc.for.59276-60425.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.59276-60425.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.59276-60425.Ar_EST_120301b_rep_c11961%7Cabc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c342%7Ceukaryotic.for.60117-62820.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.60117-62820.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.60117-62820.Ar_EST_120301b_c342%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6325%7Ceukaryotic.for.60122-62377.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.60122-62377.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.60122-62377.Ar_EST_120301b_rep_c6325%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14038%7Ceukaryotic.for.60334-61979.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.60334-61979.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.60334-61979.Ar_EST_120301b_rep_c14038%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10838%7Cpredicted.for.63235-64205.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.63235-64205.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.63235-64205.Ar_EST_120301b_c10838%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15959%7Cnon-transporter.for.63573-64952.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.63573-64952.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.63573-64952.Ar_EST_120301b_c15959%7Cnon-transporter.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1121%7Cnitrate.for.65272-66840.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.65272-66840.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.65272-66840.Ar_EST_120301b_c1121%7Cnitrate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10306%7Cnitrate.for.64797-66084.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.64797-66084.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.64797-66084.Ar_EST_120301b_c10306%7Cnitrate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7785%7Cnitrate.for.66081-68119.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.66081-68119.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.66081-68119.Ar_EST_120301b_c7785%7Cnitrate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16968%7Cguanylate.for.70042-71135.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.70042-71135.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.70042-71135.Ar_EST_120301b_c16968%7Cguanylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3296%7Ctranscription.for.72211-73510.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.72211-73510.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.72211-73510.Ar_EST_120301b_c3296%7Ctranscription.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12094%7Cpredicted.for.72879-74208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.72879-74208.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.72879-74208.Ar_EST_120301b_c12094%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16226%7Cprotein.for.73862-75151.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.73862-75151.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.73862-75151.Ar_EST_120301b_c16226%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3632%7Creceptor-interacting.for.74428-76656.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.74428-76656.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.74428-76656.Ar_EST_120301b_c3632%7Creceptor-interacting.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4371%7Ctata-binding.for.79865-81399.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.79865-81399.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.79865-81399.Ar_EST_120301b_rep_c4371%7Ctata-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1339%7Cupf0577.for.81265-84505.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.81265-84505.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.81265-84505.120301b_Contig1339%7Cupf0577.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13539%7C---NA---.for.89697-91031.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.89697-91031.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.89697-91031.Ar_EST_120301b_c13539%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18466%7Cchaetosphaeridium.for.90173-91792.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.90173-91792.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.90173-91792.Ar_EST_120301b_c18466%7Cchaetosphaeridium.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17951%7Cclp.for.91022-92635.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.91022-92635.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.91022-92635.Ar_EST_120301b_c17951%7Cclp.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19464%7Cbf-sam-tir-like.for.96236-97524.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.96236-97524.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.96236-97524.Ar_EST_120301b_c19464%7Cbf-sam-tir-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1663%7Csterile.for.96052-97524.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.96052-97524.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.96052-97524.Ar_EST_120301b_c1663%7Csterile.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:16 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:10 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:22 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:12 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:17 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:17 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:22 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:20 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:14 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:14 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095252%7Cgb%7CEFC48883%2E1%7C.for.8997-10627.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.8997-10627.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.8997-10627.gi%7C284095252%7Cgb%7CEFC48883%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094339%7Cgb%7CEFC47973%2E1%7C.for.8937-10627.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.8937-10627.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.8937-10627.gi%7C284094339%7Cgb%7CEFC47973%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082802%7Cgb%7CEFC36513%2E1%7C.for.8949-10624.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.8949-10624.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.8949-10624.gi%7C284082802%7Cgb%7CEFC36513%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086622%7Cgb%7CEFC40297%2E1%7C.for.9150-10633.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.9150-10633.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.9150-10633.gi%7C284086622%7Cgb%7CEFC40297%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090173%7Cgb%7CEFC43826%2E1%7C.for.8919-10624.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.8919-10624.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.8919-10624.gi%7C284090173%7Cgb%7CEFC43826%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094933%7Cgb%7CEFC48565%2E1%7C.for.12954-15104.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.12954-15104.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.12954-15104.gi%7C284094933%7Cgb%7CEFC48565%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090440%7Cgb%7CEFC44092%2E1%7C.for.21395-23692.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.21395-23692.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.21395-23692.gi%7C284090440%7Cgb%7CEFC44092%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095286%7Cgb%7CEFC48917%2E1%7C.for.21485-23695.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.21485-23695.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.21485-23695.gi%7C284095286%7Cgb%7CEFC48917%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095446%7Cgb%7CEFC49077%2E1%7C.for.21485-23695.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.21485-23695.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.21485-23695.gi%7C284095446%7Cgb%7CEFC49077%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092248%7Cgb%7CEFC45891%2E1%7C.for.23192-25461.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.23192-25461.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.23192-25461.gi%7C284092248%7Cgb%7CEFC45891%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092767%7Cgb%7CEFC46408%2E1%7C.for.28190-30464.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.28190-30464.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.28190-30464.gi%7C284092767%7Cgb%7CEFC46408%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089590%7Cgb%7CEFC43247%2E1%7C.for.28208-30458.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.28208-30458.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.28208-30458.gi%7C284089590%7Cgb%7CEFC43247%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089589%7Cgb%7CEFC43246%2E1%7C.for.28208-30458.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.28208-30458.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.28208-30458.gi%7C284089589%7Cgb%7CEFC43246%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095088%7Cgb%7CEFC48720%2E1%7C.for.31080-33301.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31080-33301.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31080-33301.gi%7C284095088%7Cgb%7CEFC48720%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C18644664%7Cgb%7CAAL76318%2E1%7CAF394508_1.for.31116-33244.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31116-33244.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31116-33244.gi%7C18644664%7Cgb%7CAAL76318%2E1%7CAF394508_1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092926%7Cgb%7CEFC46566%2E1%7C.for.33923-35247.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.33923-35247.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.33923-35247.gi%7C284092926%7Cgb%7CEFC46566%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084413%7Cgb%7CEFC38106%2E1%7C.for.45120-46202.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.45120-46202.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.45120-46202.gi%7C284084413%7Cgb%7CEFC38106%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093891%7Cgb%7CEFC47527%2E1%7C.for.56356-57467.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.56356-57467.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.56356-57467.gi%7C284093891%7Cgb%7CEFC47527%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090358%7Cgb%7CEFC44010%2E1%7C.for.62297-65300.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.62297-65300.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.62297-65300.gi%7C284090358%7Cgb%7CEFC44010%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097074%7Cgb%7CEFC50701%2E1%7C.for.65494-66551.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.65494-66551.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.65494-66551.gi%7C284097074%7Cgb%7CEFC50701%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095485%7Cgb%7CEFC49116%2E1%7C.for.70054-71453.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.70054-71453.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.70054-71453.gi%7C284095485%7Cgb%7CEFC49116%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084029%7Cgb%7CEFC37726%2E1%7C.for.73767-75085.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.73767-75085.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.73767-75085.gi%7C284084029%7Cgb%7CEFC37726%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090329%7Cgb%7CEFC43981%2E1%7C.for.75286-76406.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.75286-76406.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.75286-76406.gi%7C284090329%7Cgb%7CEFC43981%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093550%7Cgb%7CEFC47187%2E1%7C.for.79969-81246.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.79969-81246.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.79969-81246.gi%7C284093550%7Cgb%7CEFC47187%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091548%7Cgb%7CEFC45194%2E1%7C.for.93315-94324.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.93315-94324.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.93315-94324.gi%7C284091548%7Cgb%7CEFC45194%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:14 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:12 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.1592-2913.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.1592-2913.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.1592-2913.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.9118-10433.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.9118-10433.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.9118-10433.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.12407-14904.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.12407-14904.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.12407-14904.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.17496-18394.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.17496-18394.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.17496-18394.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.21271-25261.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.21271-25261.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.21271-25261.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.25266-26638.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.25266-26638.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.25266-26638.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.26949-29687.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.26949-29687.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.26949-29687.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.31279-34084.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.31279-34084.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.31279-34084.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.34122-35047.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.34122-35047.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.34122-35047.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.39079-40436.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.39079-40436.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.39079-40436.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.42520-43589.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.42520-43589.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.42520-43589.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.45319-46002.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.45319-46002.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.45319-46002.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.47317-51270.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.47317-51270.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.47317-51270.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.58005-59218.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.58005-59218.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.58005-59218.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.59220-60582.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.59220-60582.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.59220-60582.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.73060-74951.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.73060-74951.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.73060-74951.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.81464-84305.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.81464-84305.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.81464-84305.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.3070-4136.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.3070-4136.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.3070-4136.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.10404-11601.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.10404-11601.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.10404-11601.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.14508-15406.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.14508-15406.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.14508-15406.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.43713-45381.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.43713-45381.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.43713-45381.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.52212-53104.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.52212-53104.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.52212-53104.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.55519-56383.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.55519-56383.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.55519-56383.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.56397-57506.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.56397-57506.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.56397-57506.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.60316-67919.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.60316-67919.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.60316-67919.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.70101-71253.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.70101-71253.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.70101-71253.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.74627-76479.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.74627-76479.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.74627-76479.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.80064-81199.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.80064-81199.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.80064-81199.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.89896-91592.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.89896-91592.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.89896-91592.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.93514-94124.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.93514-94124.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.93514-94124.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.96251-97449.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.96251-97449.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.96251-97449.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C19 Length: 217569 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:2 current j:0 j_size:2 current j:1 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C19.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C19.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:13 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:17 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:8 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:20 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:10 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:19 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:15 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:11 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:15 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:19 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18086%7Cpredicted.for.1806-3007.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.1806-3007.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.1806-3007.Ar_EST_120301b_c18086%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17569%7Cme1-0071p-a159-f12-.for.4726-5785.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.4726-5785.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.4726-5785.Ar_EST_120301b_c17569%7Cme1-0071p-a159-f12-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14143%7Cpredicted.for.5350-6841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.5350-6841.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.5350-6841.Ar_EST_120301b_c14143%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8188%7Chuntingtin.for.6217-7987.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.6217-7987.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.6217-7987.Ar_EST_120301b_c8188%7Chuntingtin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7996%7Cglyceraldehyde-3-phosphate.for.7708-8784.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.7708-8784.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.7708-8784.Ar_EST_120301b_rep_c7996%7Cglyceraldehyde-3-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5073%7Cpra1.for.8169-9759.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.8169-9759.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.8169-9759.Ar_EST_120301b_rep_c5073%7Cpra1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5868%7Cpra1.for.8338-9754.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.8338-9754.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.8338-9754.Ar_EST_120301b_rep_c5868%7Cpra1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c971%7Cprotein.for.10089-11433.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.10089-11433.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.10089-11433.Ar_EST_120301b_c971%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17756%7Cdna.for.14180-15515.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.14180-15515.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.14180-15515.Ar_EST_120301b_c17756%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6314%7Cbi146m05.for.20010-21370.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.20010-21370.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.20010-21370.Ar_EST_120301b_rep_c6314%7Cbi146m05.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18921%7C---NA---.for.20166-21202.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.20166-21202.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.20166-21202.Ar_EST_120301b_rep_c18921%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19041%7C---NA---.for.20072-21110.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.20072-21110.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.20072-21110.Ar_EST_120301b_rep_c19041%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1735%7Cdna.for.19510-21674.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.19510-21674.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.19510-21674.Ar_EST_120301b_c1735%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13965%7Ctryptophan.for.20308-21500.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.20308-21500.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.20308-21500.Ar_EST_120301b_rep_c13965%7Ctryptophan.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4463%7C---NA---.for.21337-22786.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.21337-22786.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.21337-22786.Ar_EST_120301b_rep_c4463%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11964%7Chistone.for.26141-27552.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.26141-27552.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.26141-27552.Ar_EST_120301b_c11964%7Chistone.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14853%7Cpredicted.for.25824-26912.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.25824-26912.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.25824-26912.Ar_EST_120301b_c14853%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c725%7Cprotein.for.25790-27759.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.25790-27759.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.25790-27759.Ar_EST_120301b_c725%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14261%7C---NA---.for.27658-28561.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.27658-28561.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.27658-28561.Ar_EST_120301b_c14261%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11200%7Cperoxisome.for.28574-30060.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.28574-30060.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.28574-30060.Ar_EST_120301b_c11200%7Cperoxisome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16384%7C---NA---.for.28150-29386.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.28150-29386.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.28150-29386.Ar_EST_120301b_c16384%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16810%7Cperoxisomal.for.29540-30925.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.29540-30925.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.29540-30925.Ar_EST_120301b_c16810%7Cperoxisomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1284%7Cshwachman-bodian-diamond.for.30724-31913.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.30724-31913.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.30724-31913.Ar_EST_120301b_c1284%7Cshwachman-bodian-diamond.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2405%7Crna-associated.for.30286-31904.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.30286-31904.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.30286-31904.Ar_EST_120301b_c2405%7Crna-associated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7523%7Cshwachman-bodian-diamond.for.30411-31683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.30411-31683.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.30411-31683.Ar_EST_120301b_rep_c7523%7Cshwachman-bodian-diamond.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c858%7Csuccinate-.for.35387-37427.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.35387-37427.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.35387-37427.Ar_EST_120301b_c858%7Csuccinate-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14975%7Cgc-rich.for.36799-38057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.36799-38057.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.36799-38057.Ar_EST_120301b_c14975%7Cgc-rich.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17619%7Cgc-rich.for.37259-38400.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.37259-38400.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.37259-38400.Ar_EST_120301b_c17619%7Cgc-rich.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11908%7Cwd40.for.37236-38338.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.37236-38338.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.37236-38338.Ar_EST_120301b_c11908%7Cwd40.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9665%7Ctyrosyl-trna.for.40531-41818.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.40531-41818.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.40531-41818.Ar_EST_120301b_c9665%7Ctyrosyl-trna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15790%7Cadenylyltransferase.for.41871-43101.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.41871-43101.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.41871-43101.Ar_EST_120301b_c15790%7Cadenylyltransferase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18381%7C2-methylisocitrate.for.43546-44773.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.43546-44773.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.43546-44773.Ar_EST_120301b_c18381%7C2-methylisocitrate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1141%7Cmethylisocitrate.for.43547-45200.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.43547-45200.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.43547-45200.Ar_EST_120301b_c1141%7Cmethylisocitrate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5326%7Ccazn.for.46335-47659.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.46335-47659.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.46335-47659.Ar_EST_120301b_rep_c5326%7Ccazn.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16278%7Chh_ystg_54f02_t3.for.48455-49896.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.48455-49896.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.48455-49896.Ar_EST_120301b_c16278%7Chh_ystg_54f02_t3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3313%7Cdc896819.for.47270-49327.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.47270-49327.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.47270-49327.Ar_EST_120301b_c3313%7Cdc896819.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15481%7Cnadh-dependent.for.55949-56970.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.55949-56970.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.55949-56970.Ar_EST_120301b_c15481%7Cnadh-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6369%7Ccathepsin.for.56950-58951.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.56950-58951.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.56950-58951.Ar_EST_120301b_rep_c6369%7Ccathepsin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6703%7Ccathepsin.for.57416-58951.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57416-58951.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57416-58951.Ar_EST_120301b_rep_c6703%7Ccathepsin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5635%7Ccathepsin.for.57081-58956.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57081-58956.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57081-58956.Ar_EST_120301b_rep_c5635%7Ccathepsin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15567%7Ccathepsin.for.57591-58542.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57591-58542.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57591-58542.Ar_EST_120301b_rep_c15567%7Ccathepsin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18626%7Cschistosoma.for.57553-58871.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57553-58871.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57553-58871.Ar_EST_120301b_rep_c18626%7Cschistosoma.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4114%7Ccathepsin.for.57073-58967.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57073-58967.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57073-58967.Ar_EST_120301b_rep_c4114%7Ccathepsin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12361%7Cdna.for.58245-59385.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.58245-59385.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.58245-59385.Ar_EST_120301b_c12361%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11199%7Centh.for.58624-60297.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.58624-60297.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.58624-60297.Ar_EST_120301b_c11199%7Centh.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2376%7Cregulator.for.60776-62236.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.60776-62236.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.60776-62236.Ar_EST_120301b_c2376%7Cregulator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c291%7Cregulator.for.60402-63026.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.60402-63026.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.60402-63026.Ar_EST_120301b_c291%7Cregulator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14264%7Cdpo07-eadult-whole-untreated-unnorm.for.68959-70300.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.68959-70300.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.68959-70300.Ar_EST_120301b_c14264%7Cdpo07-eadult-whole-untreated-unnorm.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1316%7Cpeptide.for.70993-72991.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.70993-72991.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.70993-72991.Ar_EST_120301b_c1316%7Cpeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8577%7Cpeptide.for.70981-72404.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.70981-72404.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.70981-72404.Ar_EST_120301b_c8577%7Cpeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14052%7Cadenosylhomocysteinase.for.74276-75452.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.74276-75452.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.74276-75452.Ar_EST_120301b_rep_c14052%7Cadenosylhomocysteinase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4278%7Cdihydrolipoamide.for.73633-75728.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.73633-75728.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.73633-75728.Ar_EST_120301b_rep_c4278%7Cdihydrolipoamide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12796%7Csestrin-like.for.75023-76366.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.75023-76366.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.75023-76366.Ar_EST_120301b_c12796%7Csestrin-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14013%7Cenvelope.for.75631-76655.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.75631-76655.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.75631-76655.Ar_EST_120301b_c14013%7Cenvelope.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c294%7Csestrin-like.for.75776-77286.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.75776-77286.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.75776-77286.Ar_EST_120301b_c294%7Csestrin-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10956%7C---NA---.for.77886-79247.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.77886-79247.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.77886-79247.Ar_EST_120301b_c10956%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11463%7Chypothetical.for.80337-81687.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.80337-81687.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.80337-81687.Ar_EST_120301b_c11463%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9893%7Cpq-loop.for.81376-82839.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.81376-82839.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.81376-82839.Ar_EST_120301b_c9893%7Cpq-loop.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16844%7Chypothetical.for.93623-95050.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.93623-95050.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.93623-95050.Ar_EST_120301b_c16844%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6574%7Cprotein.for.94548-96085.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.94548-96085.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.94548-96085.Ar_EST_120301b_rep_c6574%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12988%7Cmembrane.for.96666-97923.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.96666-97923.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.96666-97923.Ar_EST_120301b_c12988%7Cmembrane.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1227%7Clysophospholipid.for.96104-98415.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.96104-98415.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.96104-98415.Ar_EST_120301b_c1227%7Clysophospholipid.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15198%7Ct-complex.for.96435-97629.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.96435-97629.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.96435-97629.Ar_EST_120301b_rep_c15198%7Ct-complex.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c821%7Csco.for.98203-99525.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.98203-99525.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.98203-99525.Ar_EST_120301b_c821%7Csco.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16830%7C---NA---.for.101216-102554.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.101216-102554.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.101216-102554.Ar_EST_120301b_c16830%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c765%7Cstart.for.100984-102358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.100984-102358.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.100984-102358.Ar_EST_120301b_c765%7Cstart.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1011%7Cactin.for.102913-104263.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102913-104263.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102913-104263.120301b_Contig1011%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7459%7Cubiquitin.for.102549-103922.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102549-103922.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102549-103922.Ar_EST_120301b_rep_c7459%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7281%7Cactin.for.102559-103719.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102559-103719.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102559-103719.Ar_EST_120301b_rep_c7281%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19974%7Cbeta.for.102516-103491.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102516-103491.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102516-103491.Ar_EST_120301b_rep_c19974%7Cbeta.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16282%7Cfq664523.for.102847-103750.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102847-103750.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102847-103750.Ar_EST_120301b_c16282%7Cfq664523.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig782%7Cactin.for.102545-104472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104472.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104472.120301b_Contig782%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4045%7Cactin.for.102541-103983.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102541-103983.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102541-103983.Ar_EST_120301b_rep_c4045%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10438%7Cactin.for.103088-104291.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103088-104291.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103088-104291.Ar_EST_120301b_c10438%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7317%7Cbeta.for.102533-103683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102533-103683.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102533-103683.Ar_EST_120301b_rep_c7317%7Cbeta.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6795%7Cbeta.for.102544-103668.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102544-103668.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102544-103668.Ar_EST_120301b_rep_c6795%7Cbeta.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig573%7Cactin.for.102881-104288.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102881-104288.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102881-104288.120301b_Contig573%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5842%7Cactin.for.102638-104158.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102638-104158.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102638-104158.Ar_EST_120301b_rep_c5842%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1143%7Cactin.for.102554-103861.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-103861.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-103861.120301b_Contig1143%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7283%7Cbeta-actin.for.102622-103856.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102622-103856.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102622-103856.Ar_EST_120301b_rep_c7283%7Cbeta-actin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20286%7Cactin.for.103194-104293.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103194-104293.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103194-104293.Ar_EST_120301b_rep_c20286%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6785%7Cactin.for.103351-104481.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103351-104481.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103351-104481.Ar_EST_120301b_rep_c6785%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8932%7Cactin.for.102900-104033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102900-104033.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102900-104033.Ar_EST_120301b_c8932%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6177%7Cactin.for.102541-104472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102541-104472.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102541-104472.Ar_EST_120301b_rep_c6177%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1364%7Cactin.for.103165-104442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103165-104442.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103165-104442.120301b_Contig1364%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10740%7Cactin.for.102897-104034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102897-104034.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102897-104034.Ar_EST_120301b_rep_c10740%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7052%7Cactin.for.102980-104144.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102980-104144.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102980-104144.Ar_EST_120301b_rep_c7052%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16711%7Cactin-like.for.103455-104490.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103455-104490.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103455-104490.Ar_EST_120301b_rep_c16711%7Cactin-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5397%7Cbeta.for.102544-103526.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102544-103526.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102544-103526.Ar_EST_120301b_rep_c5397%7Cbeta.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4024%7Cactin.for.102516-104514.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102516-104514.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102516-104514.Ar_EST_120301b_rep_c4024%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6690%7Cactin.for.103188-104366.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103188-104366.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103188-104366.Ar_EST_120301b_rep_c6690%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7250%7Cbeta-actin.for.102623-103775.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102623-103775.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102623-103775.Ar_EST_120301b_rep_c7250%7Cbeta-actin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7417%7Cactin.for.102573-103644.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102573-103644.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102573-103644.Ar_EST_120301b_rep_c7417%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4576%7Cactin.for.102713-104514.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102713-104514.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102713-104514.Ar_EST_120301b_rep_c4576%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6565%7Cactin.for.103281-104486.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103281-104486.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103281-104486.Ar_EST_120301b_rep_c6565%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11279%7Cactin.for.103111-104199.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103111-104199.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103111-104199.Ar_EST_120301b_c11279%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1814%7Cactin.for.102544-104002.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102544-104002.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102544-104002.Ar_EST_120301b_c1814%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7237%7Cubiquitin.for.102545-103765.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-103765.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-103765.Ar_EST_120301b_rep_c7237%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6092%7Cbeta.for.102545-103710.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-103710.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-103710.Ar_EST_120301b_rep_c6092%7Cbeta.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20475%7Cbeta.for.102545-103679.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-103679.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-103679.Ar_EST_120301b_rep_c20475%7Cbeta.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6612%7Cbeta-actin.for.102769-103850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102769-103850.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102769-103850.Ar_EST_120301b_rep_c6612%7Cbeta-actin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4013%7Cactin.for.102545-104438.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104438.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104438.Ar_EST_120301b_rep_c4013%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7649%7Cactin.for.102933-104177.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102933-104177.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102933-104177.Ar_EST_120301b_rep_c7649%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5328%7Cactin.for.102896-103925.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102896-103925.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102896-103925.Ar_EST_120301b_rep_c5328%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig519%7Cactin.for.102671-104472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102671-104472.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102671-104472.120301b_Contig519%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7261%7Cactin.for.102569-103763.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102569-103763.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102569-103763.Ar_EST_120301b_rep_c7261%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7574%7Cactin.for.102927-104188.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102927-104188.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102927-104188.Ar_EST_120301b_rep_c7574%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14154%7Cactin.for.103272-104375.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103272-104375.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103272-104375.Ar_EST_120301b_rep_c14154%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16255%7Cactin.for.103218-104391.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103218-104391.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103218-104391.Ar_EST_120301b_rep_c16255%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20026%7Cactin.for.103107-104141.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103107-104141.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103107-104141.Ar_EST_120301b_c20026%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5899%7Cactin.for.102883-103950.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102883-103950.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102883-103950.Ar_EST_120301b_rep_c5899%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5955%7Cbeta-actin.for.103505-104472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103505-104472.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103505-104472.Ar_EST_120301b_rep_c5955%7Cbeta-actin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7229%7CActin.for.102557-103487.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102557-103487.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102557-103487.Ar_EST_120301b_rep_c7229%7CActin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6804%7Cprotein.for.105841-107575.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105841-107575.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105841-107575.Ar_EST_120301b_rep_c6804%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15007%7Czinc.for.108314-109528.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.108314-109528.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.108314-109528.Ar_EST_120301b_c15007%7Czinc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13370%7Cau_cv_est_008a_b02.for.109246-110294.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.109246-110294.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.109246-110294.Ar_EST_120301b_c13370%7Cau_cv_est_008a_b02.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8594%7C---NA---.for.111592-113431.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.111592-113431.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.111592-113431.Ar_EST_120301b_c8594%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16528%7C---NA---.for.113739-114926.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.113739-114926.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.113739-114926.Ar_EST_120301b_c16528%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8764%7Cpseudouridine.for.127906-129892.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.127906-129892.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.127906-129892.Ar_EST_120301b_c8764%7Cpseudouridine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11591%7Chistone.for.129444-130461.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.129444-130461.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.129444-130461.Ar_EST_120301b_rep_c11591%7Chistone.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2442%7Chistone.for.129143-130465.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.129143-130465.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.129143-130465.Ar_EST_120301b_c2442%7Chistone.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11107%7Ckynureninase.for.132897-134505.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.132897-134505.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.132897-134505.Ar_EST_120301b_c11107%7Ckynureninase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1312%7Ckynureninase.for.133454-134779.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.133454-134779.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.133454-134779.Ar_EST_120301b_c1312%7Ckynureninase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18501%7Cepoxide.for.138372-139795.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.138372-139795.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.138372-139795.Ar_EST_120301b_c18501%7Cepoxide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6221%7Cvon.for.139858-141383.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139858-141383.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139858-141383.Ar_EST_120301b_rep_c6221%7Cvon.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6322%7Cvon.for.139293-140703.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139293-140703.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139293-140703.Ar_EST_120301b_rep_c6322%7Cvon.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5569%7Cinter-alpha-trypsin.for.139281-141395.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139281-141395.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139281-141395.Ar_EST_120301b_rep_c5569%7Cinter-alpha-trypsin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6355%7Cgdp-l-fucose.for.140881-142708.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.140881-142708.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.140881-142708.Ar_EST_120301b_rep_c6355%7Cgdp-l-fucose.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19416%7Cgdp-l-fucose.for.141007-142074.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.141007-142074.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.141007-142074.Ar_EST_120301b_rep_c19416%7Cgdp-l-fucose.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4330%7Cgdp-l-fucose.for.141132-142705.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.141132-142705.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.141132-142705.Ar_EST_120301b_rep_c4330%7Cgdp-l-fucose.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15292%7Cgdp-l-fucose.for.141386-142656.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.141386-142656.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.141386-142656.Ar_EST_120301b_rep_c15292%7Cgdp-l-fucose.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8424%7Ctissue.for.140951-142356.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.140951-142356.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.140951-142356.Ar_EST_120301b_rep_c8424%7Ctissue.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12996%7Cgdp-l-fucose.for.141224-142130.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.141224-142130.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.141224-142130.Ar_EST_120301b_rep_c12996%7Cgdp-l-fucose.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14212%7Caminoglycoside.for.142125-143497.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.142125-143497.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.142125-143497.Ar_EST_120301b_c14212%7Caminoglycoside.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17261%7Cthermophilic.for.143186-144667.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.143186-144667.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.143186-144667.Ar_EST_120301b_c17261%7Cthermophilic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16136%7Cprobable.for.144243-145472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.144243-145472.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.144243-145472.Ar_EST_120301b_c16136%7Cprobable.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9764%7Cregulator.for.151181-152872.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.151181-152872.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.151181-152872.Ar_EST_120301b_rep_c9764%7Cregulator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7187%7Cregulator.for.151327-153118.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.151327-153118.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.151327-153118.Ar_EST_120301b_rep_c7187%7Cregulator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c999%7Creplication.for.161477-162850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.161477-162850.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.161477-162850.Ar_EST_120301b_c999%7Creplication.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1128%7Csoluble.for.164149-165867.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.164149-165867.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.164149-165867.120301b_Contig1128%7Csoluble.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8629%7Cgq028.for.166297-167880.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.166297-167880.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.166297-167880.Ar_EST_120301b_c8629%7Cgq028.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6086%7C60s.for.167832-169064.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167832-169064.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167832-169064.Ar_EST_120301b_rep_c6086%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig123%7C60s.for.167786-169266.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167786-169266.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167786-169266.120301b_Contig123%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18572%7Cribosomal.for.168035-169064.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.168035-169064.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.168035-169064.Ar_EST_120301b_rep_c18572%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6911%7Credoxin.for.167155-168586.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167155-168586.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167155-168586.Ar_EST_120301b_rep_c6911%7Credoxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20338%7C60s.for.167804-168909.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167804-168909.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167804-168909.Ar_EST_120301b_rep_c20338%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20172%7C60s.for.167803-169031.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167803-169031.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167803-169031.Ar_EST_120301b_rep_c20172%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11878%7C---NA---.for.168799-169695.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.168799-169695.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.168799-169695.Ar_EST_120301b_c11878%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c592%7Cglutathione-dependent.for.172691-174063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.172691-174063.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.172691-174063.Ar_EST_120301b_c592%7Cglutathione-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15602%7Cwd-40.for.174212-175463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.174212-175463.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.174212-175463.Ar_EST_120301b_c15602%7Cwd-40.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5247%7Ccawy.for.175255-177616.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.175255-177616.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.175255-177616.Ar_EST_120301b_rep_c5247%7Ccawy.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19643%7Cmetc577tf.for.175646-176943.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.175646-176943.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.175646-176943.Ar_EST_120301b_rep_c19643%7Cmetc577tf.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5668%7Cbeta-propeller.for.175225-177450.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.175225-177450.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.175225-177450.Ar_EST_120301b_rep_c5668%7Cbeta-propeller.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10167%7Chypothetical.for.175909-177339.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.175909-177339.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.175909-177339.Ar_EST_120301b_rep_c10167%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18312%7Cpuncp79tv.for.177167-178457.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.177167-178457.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.177167-178457.Ar_EST_120301b_c18312%7Cpuncp79tv.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3490%7Ccytochrome.for.178105-180411.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.178105-180411.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.178105-180411.Ar_EST_120301b_c3490%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig438%7Csilent.for.180034-181671.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.180034-181671.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.180034-181671.120301b_Contig438%7Csilent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13291%7Cmagnesium.for.181514-182950.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.181514-182950.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.181514-182950.Ar_EST_120301b_c13291%7Cmagnesium.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14685%7Ccfbx.for.182149-183291.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.182149-183291.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.182149-183291.Ar_EST_120301b_c14685%7Ccfbx.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6756%7Ccharged.for.184404-186003.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.184404-186003.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.184404-186003.Ar_EST_120301b_rep_c6756%7Ccharged.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19315%7Csperm.for.184412-185594.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.184412-185594.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.184412-185594.Ar_EST_120301b_rep_c19315%7Csperm.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8432%7Cprotein.for.186019-187330.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.186019-187330.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.186019-187330.Ar_EST_120301b_c8432%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9026%7Cadenylate.for.191652-193243.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.191652-193243.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.191652-193243.Ar_EST_120301b_c9026%7Cadenylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig232%7Cprotein.for.195299-197003.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.195299-197003.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.195299-197003.120301b_Contig232%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12355%7Cachain.for.198160-199841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.198160-199841.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.198160-199841.Ar_EST_120301b_c12355%7Cachain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11421%7Ccbpn%3A.for.199372-200960.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.199372-200960.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.199372-200960.Ar_EST_120301b_c11421%7Ccbpn%3A.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12326%7Cplasmid.for.201299-202617.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.201299-202617.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.201299-202617.Ar_EST_120301b_c12326%7Cplasmid.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9661%7Cd-lactate.for.202113-203560.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.202113-203560.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.202113-203560.Ar_EST_120301b_c9661%7Cd-lactate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12252%7Cd-2-hydroxyglutarate.for.202849-204171.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.202849-204171.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.202849-204171.Ar_EST_120301b_c12252%7Cd-2-hydroxyglutarate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig82%7Cprofilin.for.205645-207160.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.205645-207160.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.205645-207160.120301b_Contig82%7Cprofilin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19204%7Ctachyzoite.for.206003-207254.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.206003-207254.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.206003-207254.Ar_EST_120301b_c19204%7Ctachyzoite.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18472%7C0298140.for.214230-215255.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.214230-215255.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.214230-215255.Ar_EST_120301b_c18472%7C0298140.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 20 ...processing 1 of 20 ...processing 2 of 20 ...processing 3 of 20 ...processing 4 of 20 ...processing 5 of 20 ...processing 6 of 20 ...processing 7 of 20 ...processing 8 of 20 ...processing 9 of 20 ...processing 10 of 20 ...processing 11 of 20 ...processing 12 of 20 ...processing 13 of 20 ...processing 14 of 20 ...processing 15 of 20 ...processing 16 of 20 ...processing 17 of 20 ...processing 18 of 20 ...processing 19 of 20 ...trimming the rest total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:108 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:95 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:92 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:111 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:103 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:97 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:95 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:105 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:98 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:90 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082602%7Cgb%7CEFC36317%2E1%7C.for.12704-14707.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.12704-14707.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.12704-14707.gi%7C284082602%7Cgb%7CEFC36317%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091570%7Cgb%7CEFC45216%2E1%7C.for.11917-15472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.11917-15472.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.11917-15472.gi%7C284091570%7Cgb%7CEFC45216%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091249%7Cgb%7CEFC44897%2E1%7C.for.15448-16409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.15448-16409.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.15448-16409.gi%7C284091249%7Cgb%7CEFC44897%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094467%7Cgb%7CEFC48101%2E1%7C.for.17077-18694.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.17077-18694.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.17077-18694.gi%7C284094467%7Cgb%7CEFC48101%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084713%7Cgb%7CEFC38403%2E1%7C.for.19098-20221.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.19098-20221.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.19098-20221.gi%7C284084713%7Cgb%7CEFC38403%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083098%7Cgb%7CEFC36805%2E1%7C.for.18813-20302.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.18813-20302.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.18813-20302.gi%7C284083098%7Cgb%7CEFC36805%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089888%7Cgb%7CEFC43543%2E1%7C.for.25893-27843.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.25893-27843.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.25893-27843.gi%7C284089888%7Cgb%7CEFC43543%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089773%7Cgb%7CEFC43428%2E1%7C.for.26241-27855.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.26241-27855.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.26241-27855.gi%7C284089773%7Cgb%7CEFC43428%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097150%7Cgb%7CEFC50777%2E1%7C.for.29329-30989.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.29329-30989.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.29329-30989.gi%7C284097150%7Cgb%7CEFC50777%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092355%7Cgb%7CEFC45997%2E1%7C.for.29371-30977.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.29371-30977.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.29371-30977.gi%7C284092355%7Cgb%7CEFC45997%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096259%7Cgb%7CEFC49887%2E1%7C.for.29368-30926.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.29368-30926.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.29368-30926.gi%7C284096259%7Cgb%7CEFC49887%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089294%7Cgb%7CEFC42952%2E1%7C.for.30300-31853.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.30300-31853.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.30300-31853.gi%7C284089294%7Cgb%7CEFC42952%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096906%7Cgb%7CEFC50533%2E1%7C.for.31243-32294.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.31243-32294.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.31243-32294.gi%7C284096906%7Cgb%7CEFC50533%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080983%7Cgb%7CEFC35253%2E1%7C.for.32408-33930.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32408-33930.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32408-33930.gi%7C284080983%7Cgb%7CEFC35253%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083648%7Cgb%7CEFC37349%2E1%7C.for.32417-33987.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32417-33987.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32417-33987.gi%7C284083648%7Cgb%7CEFC37349%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096419%7Cgb%7CEFC50047%2E1%7C.for.32417-33759.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32417-33759.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32417-33759.gi%7C284096419%7Cgb%7CEFC50047%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084263%7Cgb%7CEFC37957%2E1%7C.for.32417-33741.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32417-33741.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32417-33741.gi%7C284084263%7Cgb%7CEFC37957%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086669%7Cgb%7CEFC40344%2E1%7C.for.32417-33459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32417-33459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32417-33459.gi%7C284086669%7Cgb%7CEFC40344%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092998%7Cgb%7CEFC46638%2E1%7C.for.35392-37509.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.35392-37509.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.35392-37509.gi%7C284092998%7Cgb%7CEFC46638%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082062%7Cgb%7CEFC35848%2E1%7C.for.35398-37130.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.35398-37130.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.35398-37130.gi%7C284082062%7Cgb%7CEFC35848%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087626%7Cgb%7CEFC41294%2E1%7C.for.35461-37506.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.35461-37506.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.35461-37506.gi%7C284087626%7Cgb%7CEFC41294%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089694%7Cgb%7CEFC43350%2E1%7C.for.41200-43226.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.41200-43226.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.41200-43226.gi%7C284089694%7Cgb%7CEFC43350%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089398%7Cgb%7CEFC43056%2E1%7C.for.43509-45184.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.43509-45184.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.43509-45184.gi%7C284089398%7Cgb%7CEFC43056%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094642%7Cgb%7CEFC48275%2E1%7C.for.49328-51487.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.49328-51487.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.49328-51487.gi%7C284094642%7Cgb%7CEFC48275%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083741%7Cgb%7CEFC37441%2E1%7C.for.50946-52528.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.50946-52528.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.50946-52528.gi%7C284083741%7Cgb%7CEFC37441%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089583%7Cgb%7CEFC43240%2E1%7C.for.53473-54613.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.53473-54613.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.53473-54613.gi%7C284089583%7Cgb%7CEFC43240%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095256%7Cgb%7CEFC48887%2E1%7C.for.54305-55518.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.54305-55518.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.54305-55518.gi%7C284095256%7Cgb%7CEFC48887%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081631%7Cgb%7CEFC35564%2E1%7C.for.55682-57063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.55682-57063.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.55682-57063.gi%7C284081631%7Cgb%7CEFC35564%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092518%7Cgb%7CEFC46160%2E1%7C.for.57083-58569.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57083-58569.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57083-58569.gi%7C284092518%7Cgb%7CEFC46160%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080970%7Cgb%7CEFC35250%2E1%7C.for.57107-58131.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57107-58131.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57107-58131.gi%7C284080970%7Cgb%7CEFC35250%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092387%7Cgb%7CEFC46029%2E1%7C.for.57110-58599.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57110-58599.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57110-58599.gi%7C284092387%7Cgb%7CEFC46029%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091231%7Cgb%7CEFC44879%2E1%7C.for.57122-58599.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57122-58599.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57122-58599.gi%7C284091231%7Cgb%7CEFC44879%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096309%7Cgb%7CEFC49937%2E1%7C.for.57119-58602.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57119-58602.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57119-58602.gi%7C284096309%7Cgb%7CEFC49937%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086017%7Cgb%7CEFC39696%2E1%7C.for.57122-58626.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57122-58626.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57122-58626.gi%7C284086017%7Cgb%7CEFC39696%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092312%7Cgb%7CEFC45955%2E1%7C.for.66552-68221.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.66552-68221.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.66552-68221.gi%7C284092312%7Cgb%7CEFC45955%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095663%7Cgb%7CEFC49293%2E1%7C.for.73646-75543.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.73646-75543.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.73646-75543.gi%7C284095663%7Cgb%7CEFC49293%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089244%7Cgb%7CEFC42903%2E1%7C.for.75047-77273.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.75047-77273.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.75047-77273.gi%7C284089244%7Cgb%7CEFC42903%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088914%7Cgb%7CEFC42574%2E1%7C.for.81456-82906.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.81456-82906.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.81456-82906.gi%7C284088914%7Cgb%7CEFC42574%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088237%7Cgb%7CEFC41902%2E1%7C.for.87474-88462.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87474-88462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87474-88462.gi%7C284088237%7Cgb%7CEFC41902%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088639%7Cgb%7CEFC42301%2E1%7C.for.87465-88486.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87465-88486.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87465-88486.gi%7C284088639%7Cgb%7CEFC42301%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086665%7Cgb%7CEFC40340%2E1%7C.for.87405-88381.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87405-88381.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87405-88381.gi%7C284086665%7Cgb%7CEFC40340%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086663%7Cgb%7CEFC40338%2E1%7C.for.87462-88381.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87462-88381.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87462-88381.gi%7C284086663%7Cgb%7CEFC40338%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087769%7Cgb%7CEFC41436%2E1%7C.for.87438-88381.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87438-88381.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87438-88381.gi%7C284087769%7Cgb%7CEFC41436%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095431%7Cgb%7CEFC49062%2E1%7C.for.94523-95901.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.94523-95901.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.94523-95901.gi%7C284095431%7Cgb%7CEFC49062%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087201%7Cgb%7CEFC40872%2E1%7C.for.97862-99309.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.97862-99309.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.97862-99309.gi%7C284087201%7Cgb%7CEFC40872%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088832%7Cgb%7CEFC42493%2E1%7C.for.102590-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102590-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102590-104469.gi%7C284088832%7Cgb%7CEFC42493%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089566%7Cgb%7CEFC43223%2E1%7C.for.102560-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104469.gi%7C284089566%7Cgb%7CEFC43223%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091175%7Cgb%7CEFC44823%2E1%7C.for.102545-104466.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104466.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104466.gi%7C284091175%7Cgb%7CEFC44823%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086467%7Cgb%7CEFC40143%2E1%7C.for.102557-104463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102557-104463.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102557-104463.gi%7C284086467%7Cgb%7CEFC40143%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091949%7Cgb%7CEFC45593%2E1%7C.for.102563-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104469.gi%7C284091949%7Cgb%7CEFC45593%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093022%7Cgb%7CEFC46662%2E1%7C.for.102551-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.gi%7C284093022%7Cgb%7CEFC46662%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084913%7Cgb%7CEFC38601%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284084913%7Cgb%7CEFC38601%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091907%7Cgb%7CEFC45551%2E1%7C.for.102551-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.gi%7C284091907%7Cgb%7CEFC45551%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081216%7Cgb%7CEFC35341%2E1%7C.for.102545-103866.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-103866.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-103866.gi%7C284081216%7Cgb%7CEFC35341%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094255%7Cgb%7CEFC47890%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284094255%7Cgb%7CEFC47890%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085698%7Cgb%7CEFC39380%2E1%7C.for.102551-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.gi%7C284085698%7Cgb%7CEFC39380%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085910%7Cgb%7CEFC39590%2E1%7C.for.102554-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-104469.gi%7C284085910%7Cgb%7CEFC39590%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085859%7Cgb%7CEFC39540%2E1%7C.for.102560-104466.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104466.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104466.gi%7C284085859%7Cgb%7CEFC39540%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082408%7Cgb%7CEFC36130%2E1%7C.for.102539-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102539-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102539-104469.gi%7C284082408%7Cgb%7CEFC36130%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084215%7Cgb%7CEFC37910%2E1%7C.for.102563-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104469.gi%7C284084215%7Cgb%7CEFC37910%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082818%7Cgb%7CEFC36529%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284082818%7Cgb%7CEFC36529%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092206%7Cgb%7CEFC45849%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284092206%7Cgb%7CEFC45849%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084133%7Cgb%7CEFC37829%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284084133%7Cgb%7CEFC37829%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093050%7Cgb%7CEFC46689%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284093050%7Cgb%7CEFC46689%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081499%7Cgb%7CEFC35479%2E1%7C.for.102938-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102938-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102938-104469.gi%7C284081499%7Cgb%7CEFC35479%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090387%7Cgb%7CEFC44039%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284090387%7Cgb%7CEFC44039%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083870%7Cgb%7CEFC37569%2E1%7C.for.102545-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.gi%7C284083870%7Cgb%7CEFC37569%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090106%7Cgb%7CEFC43759%2E1%7C.for.102563-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104469.gi%7C284090106%7Cgb%7CEFC43759%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092467%7Cgb%7CEFC46109%2E1%7C.for.102563-104442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104442.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104442.gi%7C284092467%7Cgb%7CEFC46109%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081169%7Cgb%7CEFC35319%2E1%7C.for.103178-104463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103178-104463.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103178-104463.gi%7C284081169%7Cgb%7CEFC35319%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081941%7Cgb%7CEFC35759%2E1%7C.for.102899-104112.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102899-104112.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102899-104112.gi%7C284081941%7Cgb%7CEFC35759%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C7140539%7Cgb%7CAAF37002%2E1%7C.for.102551-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.gi%7C7140539%7Cgb%7CAAF37002%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C41016928%7Csp%7CQ9NJV4%2E1%7CACT1_NAEGR.for.102551-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.gi%7C41016928%7Csp%7CQ9NJV4%2E1%7CACT1_NAEGR.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091080%7Cgb%7CEFC44728%2E1%7C.for.102551-104346.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104346.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104346.gi%7C284091080%7Cgb%7CEFC44728%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081758%7Cgb%7CEFC35638%2E1%7C.for.102899-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102899-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102899-104469.gi%7C284081758%7Cgb%7CEFC35638%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090316%7Cgb%7CEFC43968%2E1%7C.for.102530-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102530-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102530-104469.gi%7C284090316%7Cgb%7CEFC43968%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087026%7Cgb%7CEFC40698%2E1%7C.for.102566-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102566-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102566-104469.gi%7C284087026%7Cgb%7CEFC40698%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085061%7Cgb%7CEFC38748%2E1%7C.for.102557-104451.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102557-104451.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102557-104451.gi%7C284085061%7Cgb%7CEFC38748%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084193%7Cgb%7CEFC37888%2E1%7C.for.102560-104460.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104460.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104460.gi%7C284084193%7Cgb%7CEFC37888%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091169%7Cgb%7CEFC44817%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284091169%7Cgb%7CEFC44817%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089912%7Cgb%7CEFC43567%2E1%7C.for.102554-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-104469.gi%7C284089912%7Cgb%7CEFC43567%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096128%7Cgb%7CEFC49757%2E1%7C.for.102551-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.gi%7C284096128%7Cgb%7CEFC49757%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089027%7Cgb%7CEFC42687%2E1%7C.for.102545-104463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104463.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104463.gi%7C284089027%7Cgb%7CEFC42687%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095858%7Cgb%7CEFC49487%2E1%7C.for.102557-104463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102557-104463.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102557-104463.gi%7C284095858%7Cgb%7CEFC49487%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094965%7Cgb%7CEFC48597%2E1%7C.for.102566-104382.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102566-104382.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102566-104382.gi%7C284094965%7Cgb%7CEFC48597%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089319%7Cgb%7CEFC42977%2E1%7C.for.102938-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102938-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102938-104469.gi%7C284089319%7Cgb%7CEFC42977%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094182%7Cgb%7CEFC47817%2E1%7C.for.103238-104466.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103238-104466.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103238-104466.gi%7C284094182%7Cgb%7CEFC47817%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092093%7Cgb%7CEFC45736%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284092093%7Cgb%7CEFC45736%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081879%7Cgb%7CEFC35716%2E1%7C.for.102899-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102899-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102899-104469.gi%7C284081879%7Cgb%7CEFC35716%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096899%7Cgb%7CEFC50526%2E1%7C.for.102554-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-104469.gi%7C284096899%7Cgb%7CEFC50526%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089740%7Cgb%7CEFC43396%2E1%7C.for.102545-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.gi%7C284089740%7Cgb%7CEFC43396%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089378%7Cgb%7CEFC43036%2E1%7C.for.102560-104442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104442.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104442.gi%7C284089378%7Cgb%7CEFC43036%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092856%7Cgb%7CEFC46496%2E1%7C.for.102545-104442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104442.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104442.gi%7C284092856%7Cgb%7CEFC46496%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094994%7Cgb%7CEFC48626%2E1%7C.for.102563-104463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104463.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104463.gi%7C284094994%7Cgb%7CEFC48626%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087839%7Cgb%7CEFC41506%2E1%7C.for.102545-104463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104463.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104463.gi%7C284087839%7Cgb%7CEFC41506%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083654%7Cgb%7CEFC37355%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284083654%7Cgb%7CEFC37355%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096006%7Cgb%7CEFC49635%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284096006%7Cgb%7CEFC49635%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085784%7Cgb%7CEFC39465%2E1%7C.for.102545-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.gi%7C284085784%7Cgb%7CEFC39465%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094441%7Cgb%7CEFC48075%2E1%7C.for.102545-104463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104463.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104463.gi%7C284094441%7Cgb%7CEFC48075%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093507%7Cgb%7CEFC47145%2E1%7C.for.102545-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.gi%7C284093507%7Cgb%7CEFC47145%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091207%7Cgb%7CEFC44855%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284091207%7Cgb%7CEFC44855%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090413%7Cgb%7CEFC44065%2E1%7C.for.102554-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-104469.gi%7C284090413%7Cgb%7CEFC44065%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093025%7Cgb%7CEFC46665%2E1%7C.for.102545-104073.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104073.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104073.gi%7C284093025%7Cgb%7CEFC46665%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090925%7Cgb%7CEFC44574%2E1%7C.for.102560-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104469.gi%7C284090925%7Cgb%7CEFC44574%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096977%7Cgb%7CEFC50604%2E1%7C.for.102674-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102674-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102674-104469.gi%7C284096977%7Cgb%7CEFC50604%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086629%7Cgb%7CEFC40304%2E1%7C.for.102551-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.gi%7C284086629%7Cgb%7CEFC40304%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095925%7Cgb%7CEFC49554%2E1%7C.for.102545-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.gi%7C284095925%7Cgb%7CEFC49554%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084108%7Cgb%7CEFC37804%2E1%7C.for.102542-103899.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-103899.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-103899.gi%7C284084108%7Cgb%7CEFC37804%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097217%7Cgb%7CEFC50844%2E1%7C.for.102551-104463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104463.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104463.gi%7C284097217%7Cgb%7CEFC50844%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087564%7Cgb%7CEFC41233%2E1%7C.for.105921-107575.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105921-107575.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105921-107575.gi%7C284087564%7Cgb%7CEFC41233%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083763%7Cgb%7CEFC37463%2E1%7C.for.105939-107563.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105939-107563.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105939-107563.gi%7C284083763%7Cgb%7CEFC37463%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087027%7Cgb%7CEFC40699%2E1%7C.for.105870-107503.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105870-107503.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105870-107503.gi%7C284087027%7Cgb%7CEFC40699%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093481%7Cgb%7CEFC47119%2E1%7C.for.105897-107503.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105897-107503.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105897-107503.gi%7C284093481%7Cgb%7CEFC47119%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087852%7Cgb%7CEFC41519%2E1%7C.for.105918-107479.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105918-107479.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105918-107479.gi%7C284087852%7Cgb%7CEFC41519%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083950%7Cgb%7CEFC37648%2E1%7C.for.105891-107584.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105891-107584.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105891-107584.gi%7C284083950%7Cgb%7CEFC37648%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084476%7Cgb%7CEFC38168%2E1%7C.for.105891-107422.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105891-107422.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105891-107422.gi%7C284084476%7Cgb%7CEFC38168%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088746%7Cgb%7CEFC42408%2E1%7C.for.105876-107506.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105876-107506.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105876-107506.gi%7C284088746%7Cgb%7CEFC42408%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095404%7Cgb%7CEFC49035%2E1%7C.for.124756-128537.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.124756-128537.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.124756-128537.gi%7C284095404%7Cgb%7CEFC49035%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090058%7Cgb%7CEFC43712%2E1%7C.for.129157-130455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.129157-130455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.129157-130455.gi%7C284090058%7Cgb%7CEFC43712%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095332%7Cgb%7CEFC48963%2E1%7C.for.132784-134747.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.132784-134747.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.132784-134747.gi%7C284095332%7Cgb%7CEFC48963%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093977%7Cgb%7CEFC47613%2E1%7C.for.139882-141374.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139882-141374.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139882-141374.gi%7C284093977%7Cgb%7CEFC47613%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088986%7Cgb%7CEFC42646%2E1%7C.for.139876-141374.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139876-141374.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139876-141374.gi%7C284088986%7Cgb%7CEFC42646%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084480%7Cgb%7CEFC38172%2E1%7C.for.140935-142691.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.140935-142691.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.140935-142691.gi%7C284084480%7Cgb%7CEFC38172%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084385%7Cgb%7CEFC38078%2E1%7C.for.140935-142691.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.140935-142691.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.140935-142691.gi%7C284084385%7Cgb%7CEFC38078%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093250%7Cgb%7CEFC46889%2E1%7C.for.144298-145361.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.144298-145361.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.144298-145361.gi%7C284093250%7Cgb%7CEFC46889%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.154523-157683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154523-157683.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154523-157683.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.for.154520-157728.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154520-157728.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154520-157728.gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.for.154493-157671.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154493-157671.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154493-157671.gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.for.154550-157671.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154550-157671.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154550-157671.gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088147%7Cgb%7CEFC41812%2E1%7C.for.154784-157671.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154784-157671.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154784-157671.gi%7C284088147%7Cgb%7CEFC41812%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.for.154781-157494.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154781-157494.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154781-157494.gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084257%7Cgb%7CEFC37951%2E1%7C.for.154544-158337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154544-158337.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154544-158337.gi%7C284084257%7Cgb%7CEFC37951%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.for.154526-157821.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154526-157821.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154526-157821.gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.for.154514-157683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154514-157683.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154514-157683.gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.for.154550-157683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154550-157683.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154550-157683.gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087408%7Cgb%7CEFC41078%2E1%7C.for.154526-157671.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154526-157671.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154526-157671.gi%7C284087408%7Cgb%7CEFC41078%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084506%7Cgb%7CEFC38198%2E1%7C.for.154550-157707.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154550-157707.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154550-157707.gi%7C284084506%7Cgb%7CEFC38198%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094023%7Cgb%7CEFC47658%2E1%7C.for.154526-157677.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154526-157677.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154526-157677.gi%7C284094023%7Cgb%7CEFC47658%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.for.154940-157443.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154940-157443.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154940-157443.gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091599%7Cgb%7CEFC45245%2E1%7C.for.154628-157437.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154628-157437.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154628-157437.gi%7C284091599%7Cgb%7CEFC45245%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.for.154991-157653.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154991-157653.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154991-157653.gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097262%7Cgb%7CEFC50889%2E1%7C.for.161178-163191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.161178-163191.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.161178-163191.gi%7C284097262%7Cgb%7CEFC50889%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096748%7Cgb%7CEFC50375%2E1%7C.for.164142-165611.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.164142-165611.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.164142-165611.gi%7C284096748%7Cgb%7CEFC50375%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095896%7Cgb%7CEFC49525%2E1%7C.for.164151-165614.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.164151-165614.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.164151-165614.gi%7C284095896%7Cgb%7CEFC49525%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094517%7Cgb%7CEFC48151%2E1%7C.for.167331-168490.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167331-168490.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167331-168490.gi%7C284094517%7Cgb%7CEFC48151%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090204%7Cgb%7CEFC43857%2E1%7C.for.168021-169063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.168021-169063.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.168021-169063.gi%7C284090204%7Cgb%7CEFC43857%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085110%7Cgb%7CEFC38796%2E1%7C.for.180033-181667.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.180033-181667.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.180033-181667.gi%7C284085110%7Cgb%7CEFC38796%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089126%7Cgb%7CEFC42785%2E1%7C.for.184670-185961.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.184670-185961.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.184670-185961.gi%7C284089126%7Cgb%7CEFC42785%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085008%7Cgb%7CEFC38695%2E1%7C.for.184670-185745.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.184670-185745.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.184670-185745.gi%7C284085008%7Cgb%7CEFC38695%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084707%7Cgb%7CEFC38397%2E1%7C.for.187068-188147.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.187068-188147.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.187068-188147.gi%7C284084707%7Cgb%7CEFC38397%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089061%7Cgb%7CEFC42721%2E1%7C.for.188067-192365.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.188067-192365.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.188067-192365.gi%7C284089061%7Cgb%7CEFC42721%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089121%7Cgb%7CEFC42780%2E1%7C.for.197096-200432.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.197096-200432.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.197096-200432.gi%7C284089121%7Cgb%7CEFC42780%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089246%7Cgb%7CEFC42905%2E1%7C.for.202027-204158.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.202027-204158.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.202027-204158.gi%7C284089246%7Cgb%7CEFC42905%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094815%7Cgb%7CEFC48448%2E1%7C.for.205605-208688.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.205605-208688.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.205605-208688.gi%7C284094815%7Cgb%7CEFC48448%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086419%7Cgb%7CEFC40096%2E1%7C.for.209039-216557.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.209039-216557.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.209039-216557.gi%7C284086419%7Cgb%7CEFC40096%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:43 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:43 now processing 0 total clusters:43 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:43 now processing 0 total clusters:43 now processing 0 ...processing 0 of 64 ...processing 1 of 64 ...processing 2 of 64 ...processing 3 of 64 ...processing 4 of 64 ...processing 5 of 64 ...processing 6 of 64 ...processing 7 of 64 ...processing 8 of 64 ...processing 9 of 64 ...processing 10 of 64 ...processing 11 of 64 ...processing 12 of 64 ...processing 13 of 64 ...processing 14 of 64 ...processing 15 of 64 ...processing 16 of 64 ...processing 17 of 64 ...processing 18 of 64 ...processing 19 of 64 ...processing 20 of 64 ...processing 21 of 64 ...processing 22 of 64 ...processing 23 of 64 ...processing 24 of 64 ...processing 25 of 64 ...processing 26 of 64 ...processing 27 of 64 ...processing 28 of 64 ...processing 29 of 64 ...processing 30 of 64 ...processing 31 of 64 ...processing 32 of 64 ...processing 33 of 64 ...processing 34 of 64 ...processing 35 of 64 ...processing 36 of 64 ...processing 37 of 64 ...processing 38 of 64 ...processing 39 of 64 ...processing 40 of 64 ...processing 41 of 64 ...processing 42 of 64 ...processing 43 of 64 ...processing 44 of 64 ...processing 45 of 64 ...processing 46 of 64 ...processing 47 of 64 ...processing 48 of 64 ...processing 49 of 64 ...processing 50 of 64 ...processing 51 of 64 ...processing 52 of 64 ...processing 53 of 64 ...processing 54 of 64 ...processing 55 of 64 ...processing 56 of 64 ...processing 57 of 64 ...processing 58 of 64 ...processing 59 of 64 ...processing 60 of 64 ...processing 61 of 64 ...processing 62 of 64 ...processing 63 of 64 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:43 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:43 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 62 ...processing 1 of 62 ...processing 2 of 62 ...processing 3 of 62 ...processing 4 of 62 ...processing 5 of 62 ...processing 6 of 62 ...processing 7 of 62 ...processing 8 of 62 ...processing 9 of 62 ...processing 10 of 62 ...processing 11 of 62 ...processing 12 of 62 ...processing 13 of 62 ...processing 14 of 62 ...processing 15 of 62 ...processing 16 of 62 ...processing 17 of 62 ...processing 18 of 62 ...processing 19 of 62 ...processing 20 of 62 ...processing 21 of 62 ...processing 22 of 62 ...processing 23 of 62 ...processing 24 of 62 ...processing 25 of 62 ...processing 26 of 62 ...processing 27 of 62 ...processing 28 of 62 ...processing 29 of 62 ...processing 30 of 62 ...processing 31 of 62 ...processing 32 of 62 ...processing 33 of 62 ...processing 34 of 62 ...processing 35 of 62 ...processing 36 of 62 ...processing 37 of 62 ...processing 38 of 62 ...processing 39 of 62 ...processing 40 of 62 ...processing 41 of 62 ...processing 42 of 62 ...processing 43 of 62 ...processing 44 of 62 ...processing 45 of 62 ...processing 46 of 62 ...processing 47 of 62 ...processing 48 of 62 ...processing 49 of 62 ...processing 50 of 62 ...processing 51 of 62 ...processing 52 of 62 ...processing 53 of 62 ...processing 54 of 62 ...processing 55 of 62 ...processing 56 of 62 ...processing 57 of 62 ...processing 58 of 62 ...processing 59 of 62 ...processing 60 of 62 ...processing 61 of 62 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 ...processing 0 of 21 ...processing 1 of 21 ...processing 2 of 21 ...processing 3 of 21 ...processing 4 of 21 ...processing 5 of 21 ...processing 6 of 21 ...processing 7 of 21 ...processing 8 of 21 ...processing 9 of 21 ...processing 10 of 21 ...processing 11 of 21 ...processing 12 of 21 ...processing 13 of 21 ...processing 14 of 21 ...processing 15 of 21 ...processing 16 of 21 ...processing 17 of 21 ...processing 18 of 21 ...processing 19 of 21 ...processing 20 of 21 ...trimming the rest total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 18 ...processing 1 of 18 ...processing 2 of 18 ...processing 3 of 18 ...processing 4 of 18 ...processing 5 of 18 ...processing 6 of 18 ...processing 7 of 18 ...processing 8 of 18 ...processing 9 of 18 ...processing 10 of 18 ...processing 11 of 18 ...processing 12 of 18 ...processing 13 of 18 ...processing 14 of 18 ...processing 15 of 18 ...processing 16 of 18 ...processing 17 of 18 ...processing 0 of 20 ...processing 1 of 20 ...processing 2 of 20 ...processing 3 of 20 ...processing 4 of 20 ...processing 5 of 20 ...processing 6 of 20 ...processing 7 of 20 ...processing 8 of 20 ...processing 9 of 20 ...processing 10 of 20 ...processing 11 of 20 ...processing 12 of 20 ...processing 13 of 20 ...processing 14 of 20 ...processing 15 of 20 ...processing 16 of 20 ...processing 17 of 20 ...processing 18 of 20 ...processing 19 of 20 ...trimming the rest ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 20 ...processing 1 of 20 ...processing 2 of 20 ...processing 3 of 20 ...processing 4 of 20 ...processing 5 of 20 ...processing 6 of 20 ...processing 7 of 20 ...processing 8 of 20 ...processing 9 of 20 ...processing 10 of 20 ...processing 11 of 20 ...processing 12 of 20 ...processing 13 of 20 ...processing 14 of 20 ...processing 15 of 20 ...processing 16 of 20 ...processing 17 of 20 ...processing 18 of 20 ...processing 19 of 20 ...trimming the rest ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.2005-2807.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.2005-2807.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.2005-2807.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.5530-7787.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.5530-7787.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.5530-7787.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.10288-11233.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.10288-11233.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.10288-11233.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.12116-15315.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.12116-15315.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.12116-15315.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.19006-20102.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.19006-20102.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.19006-20102.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.21536-22595.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.21536-22595.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.21536-22595.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.25950-27655.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.25950-27655.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.25950-27655.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.27857-31715.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.27857-31715.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.27857-31715.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.35586-37309.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.35586-37309.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.35586-37309.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.40730-41618.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.40730-41618.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.40730-41618.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.43708-45000.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.43708-45000.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.43708-45000.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.49527-52473.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.49527-52473.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.49527-52473.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.53672-54413.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.53672-54413.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.53672-54413.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.54492-55318.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.54492-55318.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.54492-55318.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.55881-56863.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.55881-56863.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.55881-56863.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.57280-60097.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.57280-60097.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.57280-60097.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.66697-68021.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.66697-68021.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.66697-68021.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.69158-70100.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.69158-70100.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.69158-70100.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.78085-79067.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.78085-79067.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.78085-79067.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.80532-81487.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.80532-81487.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.80532-81487.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.93822-94850.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.93822-94850.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.93822-94850.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.101415-102357.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.101415-102357.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.101415-102357.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.102627-104449.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.102627-104449.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.102627-104449.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.108513-109328.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.108513-109328.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.108513-109328.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.111791-113231.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.111791-113231.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.111791-113231.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.113930-114726.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.113930-114726.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.113930-114726.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.124943-129695.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.124943-129695.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.124943-129695.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.132983-134579.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.132983-134579.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.132983-134579.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.138571-139595.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.138571-139595.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.138571-139595.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.141080-142508.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.141080-142508.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.141080-142508.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.143385-144467.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.143385-144467.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.143385-144467.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.154722-157471.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.154722-157471.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.154722-157471.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.164341-165667.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.164341-165667.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.164341-165667.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.167354-168389.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.167354-168389.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.167354-168389.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.168992-169495.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.168992-169495.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.168992-169495.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.174395-175263.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.174395-175263.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.174395-175263.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.178304-180211.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.178304-180211.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.178304-180211.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.180232-181471.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.180232-181471.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.180232-181471.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.184599-185803.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.184599-185803.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.184599-185803.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.188266-192165.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.188266-192165.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.188266-192165.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/40_0.209238-216357.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/40_0.209238-216357.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/40_0.209238-216357.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/41_0.8368-9559.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/41_0.8368-9559.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/41_0.8368-9559.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/42_0.15647-16209.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/42_0.15647-16209.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/42_0.15647-16209.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/43_0.19709-21488.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/43_0.19709-21488.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/43_0.19709-21488.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/44_0.31442-32094.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/44_0.31442-32094.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/44_0.31442-32094.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/45_0.32607-33730.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/45_0.32607-33730.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/45_0.32607-33730.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/46_0.36998-38200.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/46_0.36998-38200.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/46_0.36998-38200.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/47_0.41399-43026.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/47_0.41399-43026.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/47_0.41399-43026.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/48_0.46534-49127.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/48_0.46534-49127.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/48_0.46534-49127.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/49_0.60601-62837.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/49_0.60601-62837.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/49_0.60601-62837.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/50_0.71180-72791.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/50_0.71180-72791.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/50_0.71180-72791.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/51_0.73817-77145.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/51_0.73817-77145.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/51_0.73817-77145.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/52_0.81575-82706.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/52_0.81575-82706.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/52_0.81575-82706.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/53_0.94722-95805.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/53_0.94722-95805.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/53_0.94722-95805.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/54_0.96303-98215.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/54_0.96303-98215.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/54_0.96303-98215.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/55_0.98398-99325.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/55_0.98398-99325.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/55_0.98398-99325.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/56_0.102756-103291.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/56_0.102756-103291.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/56_0.102756-103291.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/57_0.103462-104351.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/57_0.103462-104351.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/57_0.103462-104351.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/58_0.106037-107477.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/58_0.106037-107477.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/58_0.106037-107477.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/59_0.109445-110094.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/59_0.109445-110094.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/59_0.109445-110094.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/60_0.129342-130265.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/60_0.129342-130265.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/60_0.129342-130265.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/61_0.139478-141218.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/61_0.139478-141218.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/61_0.139478-141218.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/62_0.142324-143297.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/62_0.142324-143297.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/62_0.142324-143297.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/63_0.144390-145272.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/63_0.144390-145272.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/63_0.144390-145272.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/64_0.151376-152918.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/64_0.151376-152918.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/64_0.151376-152918.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/65_0.161368-163003.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/65_0.161368-163003.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/65_0.161368-163003.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/66_0.166496-167680.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/66_0.166496-167680.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/66_0.166496-167680.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/67_0.168050-168863.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/67_0.168050-168863.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/67_0.168050-168863.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/68_0.172890-173863.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/68_0.172890-173863.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/68_0.172890-173863.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/69_0.175424-178257.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/69_0.175424-178257.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/69_0.175424-178257.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/70_0.181713-183091.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/70_0.181713-183091.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/70_0.181713-183091.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/71_0.186218-187151.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/71_0.186218-187151.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/71_0.186218-187151.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/72_0.187267-187947.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/72_0.187267-187947.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/72_0.187267-187947.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/73_0.191838-193043.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/73_0.191838-193043.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/73_0.191838-193043.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/74_0.195498-196803.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/74_0.195498-196803.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/74_0.195498-196803.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/75_0.197295-200760.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/75_0.197295-200760.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/75_0.197295-200760.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/76_0.201498-203971.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/76_0.201498-203971.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/76_0.201498-203971.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/77_0.205804-208491.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/77_0.205804-208491.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/77_0.205804-208491.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C20 Length: 38198 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:45 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:39 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:32 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:47 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:32 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:53 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:33 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:46 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:43 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:43 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:6 current j:0 j_size:6 current j:1 j_size:6 current j:2 j_size:6 current j:3 j_size:6 current j:4 j_size:6 current j:5 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C20.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C20.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18583%7Cnpad-.for.1604-3053.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1604-3053.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1604-3053.Ar_EST_120301b_rep_c18583%7Cnpad-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7720%7Ccfw16-.for.1383-2872.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1383-2872.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1383-2872.Ar_EST_120301b_rep_c7720%7Ccfw16-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19891%7Cxotch.for.707-2213.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.707-2213.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.707-2213.Ar_EST_120301b_c19891%7Cxotch.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11264%7Cfr663913.for.1286-2855.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1286-2855.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1286-2855.Ar_EST_120301b_rep_c11264%7Cfr663913.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18557%7Chypothetical.for.708-2095.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.708-2095.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.708-2095.Ar_EST_120301b_c18557%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19899%7Cccfh.for.1605-3040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1605-3040.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1605-3040.Ar_EST_120301b_rep_c19899%7Cccfh.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19932%7Cccfh.for.1559-2870.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1559-2870.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1559-2870.Ar_EST_120301b_rep_c19932%7Cccfh.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10247%7Cccza.for.1600-2933.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1600-2933.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1600-2933.Ar_EST_120301b_rep_c10247%7Cccza.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20330%7Chypothetical.for.837-1940.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.837-1940.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.837-1940.Ar_EST_120301b_rep_c20330%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12661%7C---NA---.for.5097-6432.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.5097-6432.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.5097-6432.Ar_EST_120301b_c12661%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17581%7Cdnaj.for.12404-13615.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.12404-13615.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.12404-13615.Ar_EST_120301b_c17581%7Cdnaj.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2840%7C---NA---.for.13023-14330.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.13023-14330.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.13023-14330.Ar_EST_120301b_c2840%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9108%7Caj495322.for.14219-15252.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.14219-15252.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.14219-15252.Ar_EST_120301b_c9108%7Caj495322.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12145%7Cfq013894.for.21499-22670.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.21499-22670.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.21499-22670.Ar_EST_120301b_c12145%7Cfq013894.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10994%7Cct751907.for.22605-23506.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.22605-23506.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.22605-23506.Ar_EST_120301b_c10994%7Cct751907.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17786%7Ckr3b.for.29517-30923.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.29517-30923.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.29517-30923.Ar_EST_120301b_c17786%7Ckr3b.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10857%7C---NA---.for.30343-31585.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.30343-31585.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.30343-31585.Ar_EST_120301b_c10857%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15255%7Cresponse.for.37377-38198.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.37377-38198.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.37377-38198.Ar_EST_120301b_c15255%7Cresponse.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13487%7Cseed.for.37227-38178.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.37227-38178.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.37227-38178.Ar_EST_120301b_c13487%7Cseed.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:9 now processing 0 total clusters:9 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:6 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:7 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:3 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:7 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:7 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:4 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:4 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:7 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:6 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:8 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091150%7Cgb%7CEFC44798%2E1%7C.for.8240-10218.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.8240-10218.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.8240-10218.gi%7C284091150%7Cgb%7CEFC44798%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088477%7Cgb%7CEFC42140%2E1%7C.for.9487-12538.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.9487-12538.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.9487-12538.gi%7C284088477%7Cgb%7CEFC42140%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... cleaning clusters.... total clusters:2 now processing 0 total clusters:2 now processing 0 cleaning clusters.... total clusters:1 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:6 now processing 0 total clusters:6 now processing 0 total clusters:6 now processing 0 total clusters:6 now processing 0 total clusters:6 now processing 0 total clusters:6 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:5 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:5 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:5 now processing 0 total clusters:5 now processing 0 total clusters:5 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.1494-2766.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.1494-2766.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.1494-2766.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.8439-10018.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.8439-10018.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.8439-10018.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.13222-14130.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.13222-14130.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.13222-14130.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.21660-22549.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.21660-22549.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.21660-22549.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.29658-30723.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.29658-30723.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.29658-30723.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.867-2865.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.867-2865.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.867-2865.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.5296-6232.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.5296-6232.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.5296-6232.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.9686-12338.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.9686-12338.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.9686-12338.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.37550-38198.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.37550-38198.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.37550-38198.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C21 Length: 24727 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C21.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C21.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5800%7Cprotein.for.2340-4098.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.2340-4098.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.2340-4098.Ar_EST_120301b_rep_c5800%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4503%7Cpredicted.for.6316-7743.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.6316-7743.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.6316-7743.Ar_EST_120301b_rep_c4503%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17043%7Ccpad-.for.6339-7461.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.6339-7461.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.6339-7461.Ar_EST_120301b_rep_c17043%7Ccpad-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17466%7C---NA---.for.7916-8809.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.7916-8809.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.7916-8809.Ar_EST_120301b_c17466%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14567%7Cvacuolar.for.9221-10207.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.9221-10207.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.9221-10207.Ar_EST_120301b_c14567%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3574%7Cankyrin.for.9580-11322.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.9580-11322.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.9580-11322.Ar_EST_120301b_c3574%7Cankyrin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10050%7Cunnamed.for.11732-13128.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.11732-13128.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.11732-13128.Ar_EST_120301b_c10050%7Cunnamed.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16424%7Canolis.for.11685-13057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.11685-13057.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.11685-13057.Ar_EST_120301b_c16424%7Canolis.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20139%7Cproteasome.for.13952-15118.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.13952-15118.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.13952-15118.Ar_EST_120301b_rep_c20139%7Cproteasome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13540%7Cproteasome.for.14127-15285.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.14127-15285.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.14127-15285.Ar_EST_120301b_rep_c13540%7Cproteasome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17751%7Cproteasome.for.14041-15068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.14041-15068.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.14041-15068.Ar_EST_120301b_rep_c17751%7Cproteasome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4249%7Cprotein.for.13843-15445.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.13843-15445.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.13843-15445.Ar_EST_120301b_rep_c4249%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5673%7Cprotein.for.13889-15485.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.13889-15485.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.13889-15485.Ar_EST_120301b_rep_c5673%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18370%7Cgadus.for.17163-18491.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.17163-18491.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.17163-18491.Ar_EST_120301b_c18370%7Cgadus.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19634%7Cvirulent.for.19726-21273.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.19726-21273.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.19726-21273.Ar_EST_120301b_c19634%7Cvirulent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8853%7Ccopper.for.19140-21075.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.19140-21075.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.19140-21075.Ar_EST_120301b_c8853%7Ccopper.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1070%7Cdiguanylate.for.21034-22812.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.21034-22812.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.21034-22812.120301b_Contig1070%7Cdiguanylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1904%7Cprotein.for.22134-23516.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.22134-23516.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.22134-23516.Ar_EST_120301b_c1904%7Cprotein.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 total clusters:12 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:4 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:3 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:4 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:7 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:1 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095582%7Cgb%7CEFC49212%2E1%7C.for.2381-4068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.2381-4068.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.2381-4068.gi%7C284095582%7Cgb%7CEFC49212%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094662%7Cgb%7CEFC48295%2E1%7C.for.7742-9864.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.7742-9864.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.7742-9864.gi%7C284094662%7Cgb%7CEFC48295%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084498%7Cgb%7CEFC38190%2E1%7C.for.11338-12284.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.11338-12284.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.11338-12284.gi%7C284084498%7Cgb%7CEFC38190%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092281%7Cgb%7CEFC45924%2E1%7C.for.13885-15347.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.13885-15347.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.13885-15347.gi%7C284092281%7Cgb%7CEFC45924%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:3 now processing 0 total clusters:3 now processing 0 total clusters:3 now processing 0 in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:3 now processing 0 total clusters:3 now processing 0 total clusters:3 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:5 now processing 0 total clusters:5 now processing 0 total clusters:5 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:5 now processing 0 total clusters:5 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.2539-3898.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.2539-3898.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.2539-3898.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.7941-11126.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.7941-11126.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.7941-11126.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.19260-20889.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.19260-20889.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.19260-20889.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.21233-23332.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.21233-23332.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.21233-23332.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.6512-7543.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.6512-7543.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.6512-7543.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.11878-12928.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.11878-12928.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.11878-12928.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.14042-15285.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.14042-15285.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.14042-15285.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.17362-18291.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.17362-18291.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.17362-18291.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C22 Length: 180468 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C22.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C22.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15895%7Cgm-c1079.for.1-833.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.1-833.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.1-833.Ar_EST_120301b_c15895%7Cgm-c1079.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8111%7Ccbwo.for.3047-4827.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.3047-4827.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.3047-4827.Ar_EST_120301b_c8111%7Ccbwo.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15281%7Cche.for.4950-6277.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.4950-6277.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.4950-6277.Ar_EST_120301b_c15281%7Cche.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13217%7C020709ofm1010015ht.for.10660-11968.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.10660-11968.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.10660-11968.Ar_EST_120301b_c13217%7C020709ofm1010015ht.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17472%7Cfgp.for.14234-15465.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.14234-15465.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.14234-15465.Ar_EST_120301b_c17472%7Cfgp.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2415%7Cdomain-containing.for.14389-16400.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.14389-16400.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.14389-16400.Ar_EST_120301b_c2415%7Cdomain-containing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2973%7Crho.for.15426-17284.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.15426-17284.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.15426-17284.Ar_EST_120301b_c2973%7Crho.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3263%7Cnuphar.for.15935-17294.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.15935-17294.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.15935-17294.Ar_EST_120301b_c3263%7Cnuphar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1203%7Cthioredoxin.for.19166-20557.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.19166-20557.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.19166-20557.Ar_EST_120301b_c1203%7Cthioredoxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11684%7Ccopper.for.20132-21528.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.20132-21528.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.20132-21528.Ar_EST_120301b_c11684%7Ccopper.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16190%7C---NA---.for.23672-24979.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.23672-24979.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.23672-24979.Ar_EST_120301b_c16190%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17194%7Cpredicted.for.26296-27953.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.26296-27953.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.26296-27953.Ar_EST_120301b_c17194%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1297%7Csolute.for.29407-30960.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.29407-30960.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.29407-30960.Ar_EST_120301b_c1297%7Csolute.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10700%7Csolute.for.30213-31391.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30213-31391.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30213-31391.Ar_EST_120301b_c10700%7Csolute.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12857%7Cprotein.for.30758-31969.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30758-31969.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30758-31969.Ar_EST_120301b_c12857%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18582%7Cprotein.for.30757-32943.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30757-32943.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30757-32943.Ar_EST_120301b_c18582%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4666%7Crho.for.32331-34513.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.32331-34513.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.32331-34513.Ar_EST_120301b_rep_c4666%7Crho.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6449%7Cdomain-containing.for.32564-34314.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.32564-34314.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.32564-34314.Ar_EST_120301b_rep_c6449%7Cdomain-containing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4579%7C1-acyl-sn-glycerol-3-phosphate.for.33988-35641.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.33988-35641.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.33988-35641.Ar_EST_120301b_rep_c4579%7C1-acyl-sn-glycerol-3-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3473%7Cprotein.for.35861-38720.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.35861-38720.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.35861-38720.Ar_EST_120301b_c3473%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11453%7Couter.for.38483-39907.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.38483-39907.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.38483-39907.Ar_EST_120301b_c11453%7Couter.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12870%7Couter.for.39201-40965.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.39201-40965.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.39201-40965.Ar_EST_120301b_c12870%7Couter.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10342%7C---NA---.for.40424-42250.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.40424-42250.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.40424-42250.Ar_EST_120301b_c10342%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14468%7Cprotein.for.43627-44751.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.43627-44751.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.43627-44751.Ar_EST_120301b_c14468%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12413%7Crp.for.49689-51198.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.49689-51198.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.49689-51198.Ar_EST_120301b_c12413%7Crp.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16757%7Cby805517.for.51678-52789.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.51678-52789.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.51678-52789.Ar_EST_120301b_c16757%7Cby805517.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13658%7Cats1.for.56100-57631.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.56100-57631.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.56100-57631.Ar_EST_120301b_c13658%7Cats1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15371%7Cprobable.for.55732-57167.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.55732-57167.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.55732-57167.Ar_EST_120301b_c15371%7Cprobable.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19612%7Cats1.for.56807-57882.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.56807-57882.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.56807-57882.Ar_EST_120301b_c19612%7Cats1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18250%7Calpha.for.57860-59681.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.57860-59681.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.57860-59681.Ar_EST_120301b_c18250%7Calpha.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17288%7Cusda-fp_187010.for.59310-60593.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.59310-60593.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.59310-60593.Ar_EST_120301b_c17288%7Cusda-fp_187010.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4677%7Celongation.for.62390-64153.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.62390-64153.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.62390-64153.Ar_EST_120301b_rep_c4677%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2115%7Cacyl.for.64729-66060.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.64729-66060.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.64729-66060.Ar_EST_120301b_c2115%7Cacyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12587%7Cdolichyl-phosphate.for.65716-66849.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.65716-66849.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.65716-66849.Ar_EST_120301b_c12587%7Cdolichyl-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2089%7Cdolichyl-phosphate.for.65880-67602.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.65880-67602.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.65880-67602.Ar_EST_120301b_c2089%7Cdolichyl-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12186%7Crwp-rk.for.67114-68491.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.67114-68491.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.67114-68491.Ar_EST_120301b_c12186%7Crwp-rk.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15048%7Cnih_xgc_tropbrn3.for.67816-69083.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.67816-69083.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.67816-69083.Ar_EST_120301b_c15048%7Cnih_xgc_tropbrn3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig91%7Cglutamine-fructose-6-phosphate.for.68451-71176.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.68451-71176.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.68451-71176.120301b_Contig91%7Cglutamine-fructose-6-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c875%7Cglucosamine--fructose-6-phosphate.for.69005-71325.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.69005-71325.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.69005-71325.Ar_EST_120301b_c875%7Cglucosamine--fructose-6-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10225%7Cglutamine-fructose-6-phosphate.for.69487-70699.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.69487-70699.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.69487-70699.Ar_EST_120301b_rep_c10225%7Cglutamine-fructose-6-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13849%7C---NA---.for.70740-72086.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.70740-72086.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.70740-72086.Ar_EST_120301b_c13849%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig561%7Cpredicted.for.72048-73967.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.72048-73967.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.72048-73967.120301b_Contig561%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10241%7Cbtb.for.74150-75505.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.74150-75505.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.74150-75505.Ar_EST_120301b_c10241%7Cbtb.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18380%7Cprotein.for.78688-79987.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.78688-79987.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.78688-79987.Ar_EST_120301b_c18380%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11068%7Ccaof_daphnia_pulex_log50_library_12.for.82440-83981.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.82440-83981.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.82440-83981.Ar_EST_120301b_c11068%7Ccaof_daphnia_pulex_log50_library_12.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig150%7Cpas.for.85931-87952.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.85931-87952.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.85931-87952.120301b_Contig150%7Cpas.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15760%7C---NA---.for.87182-88494.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.87182-88494.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.87182-88494.Ar_EST_120301b_c15760%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9718%7Cprotein.for.89190-90455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.89190-90455.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.89190-90455.Ar_EST_120301b_c9718%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11290%7Cgtpase.for.102845-104156.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102845-104156.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102845-104156.Ar_EST_120301b_c11290%7Cgtpase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13678%7Cendonuclease.for.105562-106984.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.105562-106984.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.105562-106984.Ar_EST_120301b_c13678%7Cendonuclease.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2395%7Cprotein.for.108892-110254.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.108892-110254.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.108892-110254.Ar_EST_120301b_c2395%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16257%7Cyeats.for.110089-111457.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.110089-111457.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.110089-111457.Ar_EST_120301b_c16257%7Cyeats.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16468%7Cest.for.110078-111244.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.110078-111244.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.110078-111244.Ar_EST_120301b_c16468%7Cest.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14583%7Chypothetical.for.111800-113156.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.111800-113156.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.111800-113156.Ar_EST_120301b_c14583%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19785%7Cglucan.for.114526-115915.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.114526-115915.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.114526-115915.Ar_EST_120301b_c19785%7Cglucan.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20171%7Cglucan.for.114230-115683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.114230-115683.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.114230-115683.Ar_EST_120301b_c20171%7Cglucan.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10824%7Cglucan.for.114190-115490.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.114190-115490.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.114190-115490.Ar_EST_120301b_c10824%7Cglucan.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11969%7CPREDICTED%3A.for.115347-116810.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.115347-116810.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.115347-116810.Ar_EST_120301b_c11969%7CPREDICTED%3A.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14936%7Cring.for.116229-117480.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.116229-117480.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.116229-117480.Ar_EST_120301b_c14936%7Cring.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1269%7Caplysia.for.118022-119337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.118022-119337.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.118022-119337.Ar_EST_120301b_c1269%7Caplysia.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12415%7Cpredicted.for.122628-123880.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.122628-123880.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.122628-123880.Ar_EST_120301b_c12415%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17487%7Calpha.for.123103-124405.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.123103-124405.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.123103-124405.Ar_EST_120301b_c17487%7Calpha.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17006%7Cchromosome.for.123729-124995.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.123729-124995.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.123729-124995.Ar_EST_120301b_c17006%7Cchromosome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12054%7C020304kaka008397ht.for.124400-125756.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.124400-125756.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.124400-125756.Ar_EST_120301b_c12054%7C020304kaka008397ht.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9314%7Csi%3Ach211-.for.125989-127607.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.125989-127607.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.125989-127607.Ar_EST_120301b_c9314%7Csi%3Ach211-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11616%7Cprotein.for.127524-129056.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.127524-129056.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.127524-129056.Ar_EST_120301b_c11616%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15708%7Cphosphoserine.for.130824-132017.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.130824-132017.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.130824-132017.Ar_EST_120301b_c15708%7Cphosphoserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c261%7Cphosphoserine.for.131284-132651.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.131284-132651.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.131284-132651.Ar_EST_120301b_c261%7Cphosphoserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17653%7Cphosphoserine.for.131806-133058.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.131806-133058.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.131806-133058.Ar_EST_120301b_rep_c17653%7Cphosphoserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14091%7Cphosphoserine.for.131966-133271.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.131966-133271.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.131966-133271.Ar_EST_120301b_c14091%7Cphosphoserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7121%7Cprotein.for.134097-135719.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.134097-135719.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.134097-135719.Ar_EST_120301b_rep_c7121%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig326%7Cprotein.for.132489-135331.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.132489-135331.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.132489-135331.120301b_Contig326%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16289%7Csec23.for.132743-134105.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.132743-134105.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.132743-134105.Ar_EST_120301b_rep_c16289%7Csec23.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6736%7Caristolochia.for.139828-141206.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139828-141206.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139828-141206.Ar_EST_120301b_rep_c6736%7Caristolochia.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6315%7Cest940366.for.139857-141104.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139857-141104.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139857-141104.Ar_EST_120301b_rep_c6315%7Cest940366.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13068%7Cpooled.for.139871-141029.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139871-141029.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139871-141029.Ar_EST_120301b_rep_c13068%7Cpooled.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13929%7Csq2de42675.for.140270-141202.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.140270-141202.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.140270-141202.Ar_EST_120301b_rep_c13929%7Csq2de42675.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11029%7Cimmunoglobulin.for.139980-141203.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139980-141203.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139980-141203.Ar_EST_120301b_rep_c11029%7Cimmunoglobulin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14946%7Cfy831988.for.140104-141032.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.140104-141032.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.140104-141032.Ar_EST_120301b_rep_c14946%7Cfy831988.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5615%7Cprotein.for.139845-141209.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139845-141209.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139845-141209.Ar_EST_120301b_rep_c5615%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20304%7Cufl_343_70.for.139878-141104.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139878-141104.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139878-141104.Ar_EST_120301b_rep_c20304%7Cufl_343_70.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10688%7Ccj376499.for.140485-141416.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.140485-141416.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.140485-141416.Ar_EST_120301b_c10688%7Ccj376499.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3843%7Cvam6.for.141243-143315.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.141243-143315.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.141243-143315.Ar_EST_120301b_c3843%7Cvam6.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3148%7Cvam6.for.142318-143604.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.142318-143604.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.142318-143604.Ar_EST_120301b_c3148%7Cvam6.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10706%7Cvam6.for.142929-144422.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.142929-144422.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.142929-144422.Ar_EST_120301b_c10706%7Cvam6.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig120%7C24-hydroxycholesterol.for.145010-146443.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.145010-146443.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.145010-146443.120301b_Contig120%7C24-hydroxycholesterol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10803%7Cm-phase.for.158962-160174.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.158962-160174.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.158962-160174.Ar_EST_120301b_c10803%7Cm-phase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3179%7Cm-phase.for.158622-160179.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.158622-160179.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.158622-160179.Ar_EST_120301b_c3179%7Cm-phase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1473%7Cprotein.for.160432-161822.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.160432-161822.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.160432-161822.Ar_EST_120301b_c1473%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15862%7Cu1.for.161228-162785.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.161228-162785.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.161228-162785.Ar_EST_120301b_c15862%7Cu1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1039%7Cprotein.for.162586-165745.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162586-165745.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162586-165745.Ar_EST_120301b_c1039%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12113%7Cphospholipid-transporting.for.164845-166131.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.164845-166131.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.164845-166131.Ar_EST_120301b_c12113%7Cphospholipid-transporting.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1202%7Cprotein.for.165461-167255.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.165461-167255.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.165461-167255.Ar_EST_120301b_c1202%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig428%7Celongation.for.167131-168358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.167131-168358.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.167131-168358.120301b_Contig428%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16475%7Cspindle.for.173063-174841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.173063-174841.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.173063-174841.Ar_EST_120301b_c16475%7Cspindle.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8917%7Cmicrotubule.for.174515-176826.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.174515-176826.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.174515-176826.Ar_EST_120301b_c8917%7Cmicrotubule.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2889%7Cmicrotubule.for.176603-178213.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.176603-178213.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.176603-178213.Ar_EST_120301b_c2889%7Cmicrotubule.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13984%7Cubiquinone.for.178435-179738.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.178435-179738.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.178435-179738.Ar_EST_120301b_c13984%7Cubiquinone.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16223%7Cpredicted.for.179641-180468.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.179641-180468.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.179641-180468.Ar_EST_120301b_rep_c16223%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c356%7Csenescence.for.179460-180468.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.179460-180468.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.179460-180468.Ar_EST_120301b_c356%7Csenescence.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17910%7Cvon.for.179465-180468.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.179465-180468.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.179465-180468.Ar_EST_120301b_rep_c17910%7Cvon.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:67 now processing 0 total clusters:67 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:67 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:67 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:67 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:67 now processing 0 total clusters:67 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:37 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:41 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:41 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:48 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:53 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:50 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:44 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:55 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:53 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:32 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090387%7Cgb%7CEFC44039%2E1%7C.for.5934-7992.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.5934-7992.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.5934-7992.gi%7C284090387%7Cgb%7CEFC44039%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086420%7Cgb%7CEFC40097%2E1%7C.for.5946-8004.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.5946-8004.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.5946-8004.gi%7C284086420%7Cgb%7CEFC40097%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095349%7Cgb%7CEFC48980%2E1%7C.for.13485-14822.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.13485-14822.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.13485-14822.gi%7C284095349%7Cgb%7CEFC48980%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088756%7Cgb%7CEFC42418%2E1%7C.for.18996-20509.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.18996-20509.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.18996-20509.gi%7C284088756%7Cgb%7CEFC42418%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085637%7Cgb%7CEFC39319%2E1%7C.for.21370-22523.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.21370-22523.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.21370-22523.gi%7C284085637%7Cgb%7CEFC39319%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093747%7Cgb%7CEFC47384%2E1%7C.for.21217-22490.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.21217-22490.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.21217-22490.gi%7C284093747%7Cgb%7CEFC47384%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090698%7Cgb%7CEFC44348%2E1%7C.for.29504-31352.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.29504-31352.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.29504-31352.gi%7C284090698%7Cgb%7CEFC44348%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087383%7Cgb%7CEFC41053%2E1%7C.for.30814-32875.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30814-32875.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30814-32875.gi%7C284087383%7Cgb%7CEFC41053%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090239%7Cgb%7CEFC43892%2E1%7C.for.30865-32893.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30865-32893.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30865-32893.gi%7C284090239%7Cgb%7CEFC43892%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096950%7Cgb%7CEFC50577%2E1%7C.for.57873-59706.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.57873-59706.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.57873-59706.gi%7C284096950%7Cgb%7CEFC50577%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084213%7Cgb%7CEFC37908%2E1%7C.for.60507-63139.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.60507-63139.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.60507-63139.gi%7C284084213%7Cgb%7CEFC37908%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082995%7Cgb%7CEFC36703%2E1%7C.for.64841-65805.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.64841-65805.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.64841-65805.gi%7C284082995%7Cgb%7CEFC36703%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089602%7Cgb%7CEFC43258%2E1%7C.for.64728-65820.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.64728-65820.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.64728-65820.gi%7C284089602%7Cgb%7CEFC43258%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090820%7Cgb%7CEFC44470%2E1%7C.for.65960-67598.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.65960-67598.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.65960-67598.gi%7C284090820%7Cgb%7CEFC44470%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086979%7Cgb%7CEFC40652%2E1%7C.for.68893-71309.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.68893-71309.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.68893-71309.gi%7C284086979%7Cgb%7CEFC40652%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092246%7Cgb%7CEFC45889%2E1%7C.for.72193-73918.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.72193-73918.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.72193-73918.gi%7C284092246%7Cgb%7CEFC45889%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092608%7Cgb%7CEFC46249%2E1%7C.for.72208-73689.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.72208-73689.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.72208-73689.gi%7C284092608%7Cgb%7CEFC46249%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090371%7Cgb%7CEFC44023%2E1%7C.for.77792-79425.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.77792-79425.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.77792-79425.gi%7C284090371%7Cgb%7CEFC44023%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083121%7Cgb%7CEFC36828%2E1%7C.for.77795-79434.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.77795-79434.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.77795-79434.gi%7C284083121%7Cgb%7CEFC36828%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096642%7Cgb%7CEFC50269%2E1%7C.for.78695-79815.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.78695-79815.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.78695-79815.gi%7C284096642%7Cgb%7CEFC50269%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090576%7Cgb%7CEFC44227%2E1%7C.for.81422-83085.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.81422-83085.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.81422-83085.gi%7C284090576%7Cgb%7CEFC44227%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089802%7Cgb%7CEFC43457%2E1%7C.for.96533-98537.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.96533-98537.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.96533-98537.gi%7C284089802%7Cgb%7CEFC43457%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096866%7Cgb%7CEFC50493%2E1%7C.for.102814-104145.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104145.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104145.gi%7C284096866%7Cgb%7CEFC50493%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095151%7Cgb%7CEFC48783%2E1%7C.for.102823-104157.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102823-104157.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102823-104157.gi%7C284095151%7Cgb%7CEFC48783%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094810%7Cgb%7CEFC48443%2E1%7C.for.102808-104136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102808-104136.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102808-104136.gi%7C284094810%7Cgb%7CEFC48443%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093204%7Cgb%7CEFC46843%2E1%7C.for.102814-104115.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104115.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104115.gi%7C284093204%7Cgb%7CEFC46843%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095060%7Cgb%7CEFC48692%2E1%7C.for.102805-104241.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102805-104241.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102805-104241.gi%7C284095060%7Cgb%7CEFC48692%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088157%7Cgb%7CEFC41822%2E1%7C.for.102802-104127.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104127.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104127.gi%7C284088157%7Cgb%7CEFC41822%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095231%7Cgb%7CEFC48862%2E1%7C.for.102814-104220.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104220.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104220.gi%7C284095231%7Cgb%7CEFC48862%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092330%7Cgb%7CEFC45972%2E1%7C.for.102808-104265.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102808-104265.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102808-104265.gi%7C284092330%7Cgb%7CEFC45972%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087986%7Cgb%7CEFC41652%2E1%7C.for.102802-104154.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104154.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104154.gi%7C284087986%7Cgb%7CEFC41652%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085175%7Cgb%7CEFC38861%2E1%7C.for.102793-104148.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102793-104148.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102793-104148.gi%7C284085175%7Cgb%7CEFC38861%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095711%7Cgb%7CEFC49341%2E1%7C.for.102790-104265.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102790-104265.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102790-104265.gi%7C284095711%7Cgb%7CEFC49341%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092198%7Cgb%7CEFC45841%2E1%7C.for.102802-104148.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104148.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104148.gi%7C284092198%7Cgb%7CEFC45841%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093945%7Cgb%7CEFC47581%2E1%7C.for.102811-104103.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102811-104103.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102811-104103.gi%7C284093945%7Cgb%7CEFC47581%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096673%7Cgb%7CEFC50300%2E1%7C.for.102805-104136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102805-104136.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102805-104136.gi%7C284096673%7Cgb%7CEFC50300%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087489%7Cgb%7CEFC41158%2E1%7C.for.102802-104265.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104265.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104265.gi%7C284087489%7Cgb%7CEFC41158%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083677%7Cgb%7CEFC37378%2E1%7C.for.102814-104127.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104127.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104127.gi%7C284083677%7Cgb%7CEFC37378%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081592%7Cgb%7CEFC35538%2E1%7C.for.102802-104157.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104157.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104157.gi%7C284081592%7Cgb%7CEFC35538%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096540%7Cgb%7CEFC50168%2E1%7C.for.102811-104127.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102811-104127.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102811-104127.gi%7C284096540%7Cgb%7CEFC50168%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086692%7Cgb%7CEFC40367%2E1%7C.for.102796-104265.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102796-104265.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102796-104265.gi%7C284086692%7Cgb%7CEFC40367%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087105%7Cgb%7CEFC40777%2E1%7C.for.102781-104211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102781-104211.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102781-104211.gi%7C284087105%7Cgb%7CEFC40777%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087910%7Cgb%7CEFC41577%2E1%7C.for.102790-104136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102790-104136.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102790-104136.gi%7C284087910%7Cgb%7CEFC41577%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087186%7Cgb%7CEFC40857%2E1%7C.for.102814-104124.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104124.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104124.gi%7C284087186%7Cgb%7CEFC40857%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095576%7Cgb%7CEFC49206%2E1%7C.for.102799-104136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102799-104136.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102799-104136.gi%7C284095576%7Cgb%7CEFC49206%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080992%7Cgb%7CEFC35256%2E1%7C.for.103025-104196.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.103025-104196.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.103025-104196.gi%7C284080992%7Cgb%7CEFC35256%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095585%7Cgb%7CEFC49215%2E1%7C.for.102802-104205.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104205.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104205.gi%7C284095585%7Cgb%7CEFC49215%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087063%7Cgb%7CEFC40735%2E1%7C.for.102808-104133.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102808-104133.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102808-104133.gi%7C284087063%7Cgb%7CEFC40735%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089507%7Cgb%7CEFC43164%2E1%7C.for.102793-104115.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102793-104115.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102793-104115.gi%7C284089507%7Cgb%7CEFC43164%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096356%7Cgb%7CEFC49984%2E1%7C.for.102781-104115.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102781-104115.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102781-104115.gi%7C284096356%7Cgb%7CEFC49984%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092994%7Cgb%7CEFC46634%2E1%7C.for.102814-104004.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104004.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104004.gi%7C284092994%7Cgb%7CEFC46634%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089169%7Cgb%7CEFC42828%2E1%7C.for.117066-118771.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.117066-118771.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.117066-118771.gi%7C284089169%7Cgb%7CEFC42828%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090561%7Cgb%7CEFC44212%2E1%7C.for.122519-125055.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.122519-125055.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.122519-125055.gi%7C284090561%7Cgb%7CEFC44212%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096574%7Cgb%7CEFC50202%2E1%7C.for.127726-128828.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.127726-128828.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.127726-128828.gi%7C284096574%7Cgb%7CEFC50202%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088808%7Cgb%7CEFC42469%2E1%7C.for.130514-133218.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.130514-133218.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.130514-133218.gi%7C284088808%7Cgb%7CEFC42469%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084220%7Cgb%7CEFC37915%2E1%7C.for.132499-135658.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.132499-135658.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.132499-135658.gi%7C284084220%7Cgb%7CEFC37915%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095359%7Cgb%7CEFC48990%2E1%7C.for.138504-139857.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.138504-139857.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.138504-139857.gi%7C284095359%7Cgb%7CEFC48990%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091769%7Cgb%7CEFC45414%2E1%7C.for.141348-145005.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.141348-145005.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.141348-145005.gi%7C284091769%7Cgb%7CEFC45414%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085225%7Cgb%7CEFC38911%2E1%7C.for.158649-159862.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.158649-159862.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.158649-159862.gi%7C284085225%7Cgb%7CEFC38911%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081490%7Cgb%7CEFC35474%2E1%7C.for.160404-162051.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.160404-162051.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.160404-162051.gi%7C284081490%7Cgb%7CEFC35474%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092821%7Cgb%7CEFC46461%2E1%7C.for.162694-166950.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162694-166950.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162694-166950.gi%7C284092821%7Cgb%7CEFC46461%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083022%7Cgb%7CEFC36730%2E1%7C.for.162712-166962.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162712-166962.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162712-166962.gi%7C284083022%7Cgb%7CEFC36730%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093552%7Cgb%7CEFC47189%2E1%7C.for.162712-167013.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162712-167013.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162712-167013.gi%7C284093552%7Cgb%7CEFC47189%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085695%7Cgb%7CEFC39377%2E1%7C.for.162712-167037.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162712-167037.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162712-167037.gi%7C284085695%7Cgb%7CEFC39377%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085694%7Cgb%7CEFC39376%2E1%7C.for.162712-167037.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162712-167037.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162712-167037.gi%7C284085694%7Cgb%7CEFC39376%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082133%7Cgb%7CEFC35904%2E1%7C.for.165317-166962.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.165317-166962.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.165317-166962.gi%7C284082133%7Cgb%7CEFC35904%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086144%7Cgb%7CEFC39822%2E1%7C.for.169433-170394.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.169433-170394.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.169433-170394.gi%7C284086144%7Cgb%7CEFC39822%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090570%7Cgb%7CEFC44221%2E1%7C.for.178423-180014.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.178423-180014.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.178423-180014.gi%7C284090570%7Cgb%7CEFC44221%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 26 ...processing 1 of 26 ...processing 2 of 26 ...processing 3 of 26 ...processing 4 of 26 ...processing 5 of 26 ...processing 6 of 26 ...processing 7 of 26 ...processing 8 of 26 ...processing 9 of 26 ...processing 10 of 26 ...processing 11 of 26 ...processing 12 of 26 ...processing 13 of 26 ...processing 14 of 26 ...processing 15 of 26 ...processing 16 of 26 ...processing 17 of 26 ...processing 18 of 26 ...processing 19 of 26 ...processing 20 of 26 ...processing 21 of 26 ...processing 22 of 26 ...processing 23 of 26 ...processing 24 of 26 ...processing 25 of 26 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 22 ...processing 1 of 22 ...processing 2 of 22 ...processing 3 of 22 ...processing 4 of 22 ...processing 5 of 22 ...processing 6 of 22 ...processing 7 of 22 ...processing 8 of 22 ...processing 9 of 22 ...processing 10 of 22 ...processing 11 of 22 ...processing 12 of 22 ...processing 13 of 22 ...processing 14 of 22 ...processing 15 of 22 ...processing 16 of 22 ...processing 17 of 22 ...processing 18 of 22 ...processing 19 of 22 ...processing 20 of 22 ...processing 21 of 22 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:37 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:34 now processing 0 total clusters:34 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.0-851.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.0-851.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.0-851.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.3246-4627.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.3246-4627.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.3246-4627.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.6133-7804.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.6133-7804.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.6133-7804.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.10859-11768.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.10859-11768.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.10859-11768.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.20331-21328.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.20331-21328.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.20331-21328.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.21416-22323.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.21416-22323.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.21416-22323.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.26495-27753.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.26495-27753.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.26495-27753.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.30953-32743.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.30953-32743.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.30953-32743.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.49888-57927.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.49888-57927.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.49888-57927.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.58059-59506.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.58059-59506.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.58059-59506.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.60706-62939.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.60706-62939.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.60706-62939.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.65915-71109.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.65915-71109.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.65915-71109.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.74349-75305.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.74349-75305.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.74349-75305.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.77994-79234.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.77994-79234.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.77994-79234.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.81540-82885.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.81540-82885.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.81540-82885.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.86130-88294.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.86130-88294.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.86130-88294.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.102980-104020.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.102980-104020.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.102980-104020.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.109091-110054.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.109091-110054.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.109091-110054.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.117265-118571.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.117265-118571.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.117265-118571.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.126188-127407.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.126188-127407.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.126188-127407.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.130713-133076.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.130713-133076.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.130713-133076.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.138703-139657.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.138703-139657.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.138703-139657.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.140056-140933.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.140056-140933.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.140056-140933.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.141442-144805.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.141442-144805.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.141442-144805.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.159161-159974.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.159161-159974.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.159161-159974.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.160603-162588.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.160603-162588.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.160603-162588.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.162730-167055.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.162730-167055.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.162730-167055.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.173262-178013.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.173262-178013.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.173262-178013.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.179584-180468.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.179584-180468.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.179584-180468.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.5149-6077.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.5149-6077.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.5149-6077.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.13684-17094.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.13684-17094.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.13684-17094.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.19365-20357.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.19365-20357.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.19365-20357.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.23871-24779.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.23871-24779.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.23871-24779.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.29606-31191.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.29606-31191.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.29606-31191.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.32530-35441.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.32530-35441.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.32530-35441.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.36060-44551.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.36060-44551.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.36060-44551.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.59509-60393.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.59509-60393.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.59509-60393.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.64927-65860.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.64927-65860.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.64927-65860.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.70926-71886.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.70926-71886.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.70926-71886.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.72298-73718.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.72298-73718.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.72298-73718.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/40_0.78887-79787.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/40_0.78887-79787.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/40_0.78887-79787.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/41_0.82639-83781.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/41_0.82639-83781.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/41_0.82639-83781.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/42_0.89389-90356.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/42_0.89389-90356.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/42_0.89389-90356.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/43_0.96732-98337.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/43_0.96732-98337.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/43_0.96732-98337.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/44_0.105759-106784.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/44_0.105759-106784.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/44_0.105759-106784.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/45_0.110288-111257.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/45_0.110288-111257.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/45_0.110288-111257.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/46_0.111999-112956.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/46_0.111999-112956.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/46_0.111999-112956.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/47_0.114389-115483.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/47_0.114389-115483.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/47_0.114389-115483.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/48_0.115546-117280.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/48_0.115546-117280.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/48_0.115546-117280.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/49_0.118211-119137.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/49_0.118211-119137.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/49_0.118211-119137.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/50_0.122718-125556.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/50_0.122718-125556.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/50_0.122718-125556.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/51_0.127723-128856.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/51_0.127723-128856.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/51_0.127723-128856.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/52_0.132688-135521.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/52_0.132688-135521.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/52_0.132688-135521.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/53_0.145209-146243.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/53_0.145209-146243.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/53_0.145209-146243.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/54_0.178622-179841.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/54_0.178622-179841.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/54_0.178622-179841.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C23 Length: 251560 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:35 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:53 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:38 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:63 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:51 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:49 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:39 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:41 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:43 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:50 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:7 current j:0 j_size:7 current j:1 j_size:7 current j:2 j_size:7 current j:3 j_size:7 current j:4 j_size:7 current j:5 j_size:7 current j:6 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C23.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C23.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:10 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:14 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:9 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:10 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:11 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:12 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12272%7Chypothetical.for.6337-7736.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.6337-7736.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.6337-7736.Ar_EST_120301b_c12272%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18243%7Cdk907995.for.9153-10368.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.9153-10368.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.9153-10368.Ar_EST_120301b_c18243%7Cdk907995.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7871%7Cdc598359.for.10778-12259.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.10778-12259.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.10778-12259.Ar_EST_120301b_c7871%7Cdc598359.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c875%7Cglucosamine--fructose-6-phosphate.for.10913-12823.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.10913-12823.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.10913-12823.Ar_EST_120301b_c875%7Cglucosamine--fructose-6-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c273%7Cpentatricopeptide.for.11344-13207.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.11344-13207.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.11344-13207.Ar_EST_120301b_c273%7Cpentatricopeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19019%7C8807_100277_12.for.10785-12317.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.10785-12317.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.10785-12317.Ar_EST_120301b_c19019%7C8807_100277_12.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3513%7Cprotein.for.12916-15044.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.12916-15044.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.12916-15044.Ar_EST_120301b_c3513%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11592%7C294772423.for.14264-15572.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.14264-15572.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.14264-15572.Ar_EST_120301b_c11592%7C294772423.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6938%7Cpredicted.for.19566-20958.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.19566-20958.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.19566-20958.Ar_EST_120301b_rep_c6938%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10805%7Cagencourt_26185347.for.30415-32475.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.30415-32475.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.30415-32475.Ar_EST_120301b_c10805%7Cagencourt_26185347.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4838%7Ckeratin.for.32416-34153.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32416-34153.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32416-34153.Ar_EST_120301b_rep_c4838%7Ckeratin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6302%7Ckeratin.for.32987-34348.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32987-34348.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32987-34348.Ar_EST_120301b_rep_c6302%7Ckeratin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5667%7Ckeratin.for.32077-34405.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32077-34405.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32077-34405.Ar_EST_120301b_rep_c5667%7Ckeratin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18263%7Cpredicted.for.32928-34003.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32928-34003.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32928-34003.Ar_EST_120301b_rep_c18263%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6913%7Csmc.for.32076-33516.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32076-33516.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32076-33516.Ar_EST_120301b_rep_c6913%7Csmc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15759%7Csplicing.for.38497-39943.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.38497-39943.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.38497-39943.Ar_EST_120301b_c15759%7Csplicing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1630%7Cprotein.for.39271-41325.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.39271-41325.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.39271-41325.Ar_EST_120301b_c1630%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c983%7Csplicing.for.40524-41827.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.40524-41827.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.40524-41827.Ar_EST_120301b_c983%7Csplicing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15568%7Cspliceosome-associated.for.40292-41528.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.40292-41528.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.40292-41528.Ar_EST_120301b_c15568%7Cspliceosome-associated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11774%7Csplicing.for.41071-42349.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41071-42349.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41071-42349.Ar_EST_120301b_c11774%7Csplicing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3650%7Crsc.for.46681-50017.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.46681-50017.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.46681-50017.Ar_EST_120301b_c3650%7Crsc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9332%7Cswi.for.49559-51021.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.49559-51021.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.49559-51021.Ar_EST_120301b_c9332%7Cswi.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11295%7Cbeach.for.50529-52094.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.50529-52094.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.50529-52094.Ar_EST_120301b_c11295%7Cbeach.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10349%7Cbeach.for.51738-53143.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.51738-53143.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.51738-53143.Ar_EST_120301b_c10349%7Cbeach.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18164%7Cneurobeachin-like.for.52474-53990.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.52474-53990.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.52474-53990.Ar_EST_120301b_c18164%7Cneurobeachin-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1782%7Cneurobeachin-like.for.54265-55844.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.54265-55844.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.54265-55844.Ar_EST_120301b_c1782%7Cneurobeachin-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2203%7Cbeach.for.55572-57353.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.55572-57353.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.55572-57353.Ar_EST_120301b_c2203%7Cbeach.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11079%7Cprotein.for.57324-58683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.57324-58683.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.57324-58683.Ar_EST_120301b_c11079%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1313%7Cvacuolar.for.57990-59334.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.57990-59334.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.57990-59334.Ar_EST_120301b_c1313%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c145%7C40s.for.58792-60295.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.58792-60295.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.58792-60295.Ar_EST_120301b_c145%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c936%7Chypothetical.for.59809-61596.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.59809-61596.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.59809-61596.Ar_EST_120301b_c936%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15515%7Cprotein.for.60545-61895.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.60545-61895.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.60545-61895.Ar_EST_120301b_c15515%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14904%7Cmetal-dependent.for.62278-63609.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.62278-63609.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.62278-63609.Ar_EST_120301b_c14904%7Cmetal-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10329%7Cav385603.for.63143-64309.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.63143-64309.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.63143-64309.Ar_EST_120301b_c10329%7Cav385603.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19262%7Csignal.for.62864-64138.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.62864-64138.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.62864-64138.Ar_EST_120301b_c19262%7Csignal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1637%7Cdna.for.66879-69168.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.66879-69168.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.66879-69168.Ar_EST_120301b_c1637%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14997%7Cdna.for.68365-69679.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.68365-69679.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.68365-69679.Ar_EST_120301b_c14997%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13721%7CHypothetical.for.70080-71563.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.70080-71563.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.70080-71563.Ar_EST_120301b_c13721%7CHypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3375%7Crelated.for.70835-72195.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.70835-72195.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.70835-72195.Ar_EST_120301b_c3375%7Crelated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6563%7Cmeloidogyne.for.71999-73500.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.71999-73500.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.71999-73500.Ar_EST_120301b_rep_c6563%7Cmeloidogyne.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13629%7Cpredicted.for.72275-73348.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.72275-73348.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.72275-73348.Ar_EST_120301b_rep_c13629%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20446%7C40s.for.72275-73499.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.72275-73499.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.72275-73499.Ar_EST_120301b_rep_c20446%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10109%7Ctrc_19-.for.72002-73566.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.72002-73566.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.72002-73566.Ar_EST_120301b_rep_c10109%7Ctrc_19-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig430%7Cssalnwh504101.for.72000-73472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.72000-73472.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.72000-73472.120301b_Contig430%7Cssalnwh504101.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig229%7Cnucleotide.for.73892-76171.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.73892-76171.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.73892-76171.120301b_Contig229%7Cnucleotide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2043%7Cnucleotide.for.75653-76987.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.75653-76987.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.75653-76987.Ar_EST_120301b_c2043%7Cnucleotide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8983%7C---NA---.for.76553-78232.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.76553-78232.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.76553-78232.Ar_EST_120301b_c8983%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12405%7Cwd40.for.77496-78867.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.77496-78867.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.77496-78867.Ar_EST_120301b_c12405%7Cwd40.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4427%7Cglk1_triva.for.80928-83103.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.80928-83103.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.80928-83103.Ar_EST_120301b_rep_c4427%7Cglk1_triva.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17133%7C---NA---.for.85095-86344.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.85095-86344.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.85095-86344.Ar_EST_120301b_c17133%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7928%7Cig.for.86040-87963.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.86040-87963.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.86040-87963.Ar_EST_120301b_c7928%7Cig.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12649%7Cprotein.for.87787-89098.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.87787-89098.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.87787-89098.Ar_EST_120301b_c12649%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2907%7Cubiquitin.for.90189-92656.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.90189-92656.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.90189-92656.Ar_EST_120301b_c2907%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2207%7Cubiquitin.for.92015-93326.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.92015-93326.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.92015-93326.Ar_EST_120301b_c2207%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8690%7Chypothetical.for.93831-95434.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.93831-95434.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.93831-95434.Ar_EST_120301b_c8690%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1542%7Chypothetical.for.93572-95544.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.93572-95544.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.93572-95544.Ar_EST_120301b_c1542%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c307%7Cpotassium.for.97783-99799.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.97783-99799.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.97783-99799.Ar_EST_120301b_c307%7Cpotassium.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1137%7Cpotassium.for.99027-100692.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.99027-100692.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.99027-100692.120301b_Contig1137%7Cpotassium.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1107%7Crubrerythrin.for.102806-104060.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.102806-104060.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.102806-104060.Ar_EST_120301b_c1107%7Crubrerythrin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9961%7Clv_hc_ra061h09f.for.103467-105337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.103467-105337.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.103467-105337.Ar_EST_120301b_c9961%7Clv_hc_ra061h09f.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3345%7Cmdfw.for.104538-106152.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.104538-106152.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.104538-106152.Ar_EST_120301b_c3345%7Cmdfw.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2319%7Cl-aspartate.for.105561-107091.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.105561-107091.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.105561-107091.Ar_EST_120301b_c2319%7Cl-aspartate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17231%7Cl-aspartate.for.105988-107295.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.105988-107295.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.105988-107295.Ar_EST_120301b_c17231%7Cl-aspartate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6462%7Cheat.for.108680-110085.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.108680-110085.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.108680-110085.Ar_EST_120301b_rep_c6462%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9388%7Cribosomal.for.108641-109814.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.108641-109814.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.108641-109814.Ar_EST_120301b_rep_c9388%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5623%7Cprotein.for.108638-110171.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.108638-110171.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.108638-110171.Ar_EST_120301b_rep_c5623%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13361%7Crasgtpase-activating.for.108910-110082.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.108910-110082.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.108910-110082.Ar_EST_120301b_rep_c13361%7Crasgtpase-activating.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14704%7Ccbht.for.110606-111814.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.110606-111814.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.110606-111814.Ar_EST_120301b_c14704%7Ccbht.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9096%7Cshort-chain.for.113730-115106.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.113730-115106.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.113730-115106.Ar_EST_120301b_c9096%7Cshort-chain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c617%7Cshort-chain.for.114369-115855.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.114369-115855.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.114369-115855.Ar_EST_120301b_c617%7Cshort-chain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11555%7Ccondensin.for.115828-117655.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.115828-117655.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.115828-117655.Ar_EST_120301b_c11555%7Ccondensin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4730%7C2-oxoglutarate.for.118383-120710.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.118383-120710.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.118383-120710.Ar_EST_120301b_rep_c4730%7C2-oxoglutarate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9087%7C2-oxoglutarate.for.119310-120836.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.119310-120836.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.119310-120836.Ar_EST_120301b_rep_c9087%7C2-oxoglutarate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c377%7Coxoglutarate.for.119770-121524.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.119770-121524.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.119770-121524.Ar_EST_120301b_c377%7Coxoglutarate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig86%7Coxoglutarate.for.120319-122186.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.120319-122186.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.120319-122186.120301b_Contig86%7Coxoglutarate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9136%7C---NA---.for.121984-123442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.121984-123442.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.121984-123442.Ar_EST_120301b_c9136%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15662%7C04bax.for.123453-124718.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.123453-124718.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.123453-124718.Ar_EST_120301b_c15662%7C04bax.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10569%7C---NA---.for.124646-125909.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.124646-125909.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.124646-125909.Ar_EST_120301b_c10569%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9106%7Cest1049462.for.126134-128669.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.126134-128669.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.126134-128669.Ar_EST_120301b_c9106%7Cest1049462.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig958%7Cwd.for.128313-130118.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.128313-130118.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.128313-130118.120301b_Contig958%7Cwd.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7976%7Cvacuolar.for.129482-131502.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.129482-131502.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.129482-131502.Ar_EST_120301b_c7976%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4653%7Cloc496093.for.132642-134563.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.132642-134563.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.132642-134563.Ar_EST_120301b_rep_c4653%7Cloc496093.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14445%7Cguanine.for.132861-133899.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.132861-133899.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.132861-133899.Ar_EST_120301b_rep_c14445%7Cguanine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7186%7Cloc496093.for.132642-134374.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.132642-134374.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.132642-134374.Ar_EST_120301b_rep_c7186%7Cloc496093.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13603%7Cnuclear.for.133797-134929.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.133797-134929.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.133797-134929.Ar_EST_120301b_c13603%7Cnuclear.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16532%7Coxax-.for.134229-135699.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.134229-135699.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.134229-135699.Ar_EST_120301b_c16532%7Coxax-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5790%7Ca.for.137376-138875.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.137376-138875.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.137376-138875.Ar_EST_120301b_rep_c5790%7Ca.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig310%7Cheat.for.135898-138850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.135898-138850.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.135898-138850.120301b_Contig310%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12450%7C---NA---.for.138995-140087.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.138995-140087.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.138995-140087.Ar_EST_120301b_c12450%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7908%7Cdomain-containing.for.141024-142430.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.141024-142430.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.141024-142430.Ar_EST_120301b_c7908%7Cdomain-containing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7834%7Cg-protein.for.142400-144309.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142400-144309.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142400-144309.Ar_EST_120301b_c7834%7Cg-protein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19743%7Cguanine.for.143080-144247.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.143080-144247.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.143080-144247.Ar_EST_120301b_c19743%7Cguanine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13715%7Cglycoprotein.for.144427-145703.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.144427-145703.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.144427-145703.Ar_EST_120301b_rep_c13715%7Cglycoprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10950%7Cdna.for.146053-147455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.146053-147455.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.146053-147455.Ar_EST_120301b_c10950%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14111%7Cdna.for.146865-148324.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.146865-148324.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.146865-148324.Ar_EST_120301b_c14111%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig531%7Cprotein.for.147650-149098.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.147650-149098.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.147650-149098.120301b_Contig531%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig634%7Ccr529494.for.150372-151811.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.150372-151811.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.150372-151811.120301b_Contig634%7Ccr529494.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7634%7Ccr529494.for.150541-151631.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.150541-151631.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.150541-151631.Ar_EST_120301b_rep_c7634%7Ccr529494.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7240%7Ccr529494.for.150235-151891.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.150235-151891.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.150235-151891.Ar_EST_120301b_rep_c7240%7Ccr529494.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9367%7C---NA---.for.152138-153239.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.152138-153239.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.152138-153239.Ar_EST_120301b_c9367%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16367%7C4-hydroxyphenylpyruvate.for.153226-154544.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.153226-154544.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.153226-154544.Ar_EST_120301b_c16367%7C4-hydroxyphenylpyruvate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c854%7C4-hydroxyphenylpyruvate.for.152627-154115.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.152627-154115.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.152627-154115.Ar_EST_120301b_c854%7C4-hydroxyphenylpyruvate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6215%7Crna.for.159799-161632.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.159799-161632.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.159799-161632.Ar_EST_120301b_rep_c6215%7Crna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5579%7Crna.for.159768-161642.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.159768-161642.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.159768-161642.Ar_EST_120301b_rep_c5579%7Crna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14244%7Crna.for.160284-161614.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.160284-161614.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.160284-161614.Ar_EST_120301b_rep_c14244%7Crna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10333%7Cacyl-.for.159869-161044.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.159869-161044.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.159869-161044.Ar_EST_120301b_c10333%7Cacyl-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1371%7Crac.for.167294-169987.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.167294-169987.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.167294-169987.120301b_Contig1371%7Crac.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17331%7Cnedd8.for.167035-168118.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.167035-168118.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.167035-168118.Ar_EST_120301b_c17331%7Cnedd8.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10519%7Cest.for.169349-170698.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.169349-170698.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.169349-170698.Ar_EST_120301b_c10519%7Cest.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4191%7Csuccinyl-.for.170904-172812.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.170904-172812.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.170904-172812.Ar_EST_120301b_rep_c4191%7Csuccinyl-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4684%7Cmeloidogyne.for.172079-173713.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.172079-173713.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.172079-173713.Ar_EST_120301b_rep_c4684%7Cmeloidogyne.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15717%7Culva.for.172475-173715.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.172475-173715.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.172475-173715.Ar_EST_120301b_rep_c15717%7Culva.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9614%7Ccohesin.for.182031-184093.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.182031-184093.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.182031-184093.Ar_EST_120301b_c9614%7Ccohesin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17764%7C---NA---.for.183901-185011.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.183901-185011.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.183901-185011.Ar_EST_120301b_c17764%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1778%7Chypothetical.for.183763-185094.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.183763-185094.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.183763-185094.Ar_EST_120301b_c1778%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14507%7Chypothetical.for.184948-186185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.184948-186185.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.184948-186185.Ar_EST_120301b_c14507%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9088%7Cdiguanylate.for.185779-187336.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.185779-187336.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.185779-187336.Ar_EST_120301b_c9088%7Cdiguanylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1730%7Cleucine-rich.for.188767-190142.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.188767-190142.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.188767-190142.Ar_EST_120301b_c1730%7Cleucine-rich.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3669%7Ccentrosome-.for.189857-191499.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.189857-191499.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.189857-191499.Ar_EST_120301b_c3669%7Ccentrosome-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14832%7C---NA---.for.190095-191135.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.190095-191135.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.190095-191135.Ar_EST_120301b_rep_c14832%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15417%7Chypothetical.for.189764-191335.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.189764-191335.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.189764-191335.Ar_EST_120301b_c15417%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9815%7Cpre-mrna-splicing.for.191755-193413.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.191755-193413.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.191755-193413.Ar_EST_120301b_c9815%7Cpre-mrna-splicing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2402%7Calpha-l-glutamate.for.192780-194621.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.192780-194621.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.192780-194621.Ar_EST_120301b_c2402%7Calpha-l-glutamate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2515%7Cfq080129.for.200643-201890.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.200643-201890.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.200643-201890.Ar_EST_120301b_c2515%7Cfq080129.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16244%7Cpredicted.for.203700-205068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.203700-205068.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.203700-205068.Ar_EST_120301b_c16244%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig564%7Calg-2.for.204341-206843.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204341-206843.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204341-206843.120301b_Contig564%7Calg-2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16467%7Cfr764264.for.204297-205408.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204297-205408.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204297-205408.Ar_EST_120301b_rep_c16467%7Cfr764264.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19160%7Crho.for.204343-205515.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204343-205515.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204343-205515.Ar_EST_120301b_rep_c19160%7Crho.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig577%7Calg-2.for.204322-207530.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204322-207530.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204322-207530.120301b_Contig577%7Calg-2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig646%7C3-hydroxyisobutyrate.for.210928-212168.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.210928-212168.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.210928-212168.120301b_Contig646%7C3-hydroxyisobutyrate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7959%7C3-hydroxyisobutyrate.for.210928-212620.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.210928-212620.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.210928-212620.Ar_EST_120301b_c7959%7C3-hydroxyisobutyrate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1520%7Cring.for.212862-214368.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.212862-214368.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.212862-214368.Ar_EST_120301b_c1520%7Cring.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17963%7Cribonuclease.for.213718-215087.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.213718-215087.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.213718-215087.Ar_EST_120301b_c17963%7Cribonuclease.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15655%7Chydroxyacylglutathione.for.217920-219067.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.217920-219067.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.217920-219067.Ar_EST_120301b_c15655%7Chydroxyacylglutathione.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1032%7Cbar.for.217720-219194.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.217720-219194.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.217720-219194.Ar_EST_120301b_c1032%7Cbar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3714%7Cpredicted.for.219865-221920.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.219865-221920.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.219865-221920.Ar_EST_120301b_c3714%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9360%7Cpectin.for.222677-223963.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.222677-223963.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.222677-223963.Ar_EST_120301b_c9360%7Cpectin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14957%7C---NA---.for.223737-224678.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.223737-224678.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.223737-224678.Ar_EST_120301b_c14957%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16305%7Ccu718678.for.227564-228814.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.227564-228814.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.227564-228814.Ar_EST_120301b_c16305%7Ccu718678.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15895%7Cgm-c1079.for.231109-232430.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.231109-232430.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.231109-232430.Ar_EST_120301b_c15895%7Cgm-c1079.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15734%7Celectron.for.237011-238483.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.237011-238483.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.237011-238483.Ar_EST_120301b_c15734%7Celectron.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig277%7Celectron-transferring-flavoprotein.for.235927-238334.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.235927-238334.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.235927-238334.120301b_Contig277%7Celectron-transferring-flavoprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14121%7Csme00002039.for.238974-239931.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.238974-239931.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.238974-239931.Ar_EST_120301b_rep_c14121%7Csme00002039.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4568%7Chypothetical.for.238239-240574.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.238239-240574.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.238239-240574.Ar_EST_120301b_rep_c4568%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7127%7Chypothetical.for.238312-239951.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.238312-239951.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.238312-239951.Ar_EST_120301b_rep_c7127%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13716%7Cpossible.for.239125-240151.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.239125-240151.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.239125-240151.Ar_EST_120301b_rep_c13716%7Cpossible.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13710%7C---NA---.for.239844-240691.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.239844-240691.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.239844-240691.Ar_EST_120301b_c13710%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig398%7Cphage.for.240269-242260.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.240269-242260.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.240269-242260.120301b_Contig398%7Cphage.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8397%7Cprotein.for.241758-243744.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.241758-243744.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.241758-243744.Ar_EST_120301b_c8397%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8110%7Clongevity.for.242976-244909.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.242976-244909.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.242976-244909.Ar_EST_120301b_c8110%7Clongevity.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13752%7Ctranscriptional.for.248009-249354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.248009-249354.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.248009-249354.Ar_EST_120301b_rep_c13752%7Ctranscriptional.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15531%7Ctranscriptional.for.247898-249032.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.247898-249032.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.247898-249032.Ar_EST_120301b_c15531%7Ctranscriptional.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1651%7Ctpr.for.248173-249572.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.248173-249572.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.248173-249572.Ar_EST_120301b_c1651%7Ctpr.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c720%7Ctpr.for.247246-248705.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.247246-248705.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.247246-248705.Ar_EST_120301b_c720%7Ctpr.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11668%7Ccce.for.248728-249756.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.248728-249756.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.248728-249756.Ar_EST_120301b_c11668%7Ccce.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17777%7Cfungal.for.249599-250715.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.249599-250715.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.249599-250715.Ar_EST_120301b_c17777%7Cfungal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13808%7Ccls.for.249917-251189.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.249917-251189.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.249917-251189.Ar_EST_120301b_c13808%7Ccls.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 total clusters:97 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:89 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:71 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:60 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:85 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:79 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:74 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:70 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:82 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:72 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:83 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089856%7Cgb%7CEFC43511%2E1%7C.for.15123-17086.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.15123-17086.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.15123-17086.gi%7C284089856%7Cgb%7CEFC43511%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094339%7Cgb%7CEFC47973%2E1%7C.for.16848-18751.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.16848-18751.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.16848-18751.gi%7C284094339%7Cgb%7CEFC47973%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088678%7Cgb%7CEFC42340%2E1%7C.for.16848-18457.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.16848-18457.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.16848-18457.gi%7C284088678%7Cgb%7CEFC42340%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094128%7Cgb%7CEFC47763%2E1%7C.for.18785-20125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18785-20125.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18785-20125.gi%7C284094128%7Cgb%7CEFC47763%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093755%7Cgb%7CEFC47392%2E1%7C.for.18785-20125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18785-20125.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18785-20125.gi%7C284093755%7Cgb%7CEFC47392%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084671%7Cgb%7CEFC38361%2E1%7C.for.18785-20125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18785-20125.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18785-20125.gi%7C284084671%7Cgb%7CEFC38361%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087410%7Cgb%7CEFC41080%2E1%7C.for.18821-20125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18821-20125.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18821-20125.gi%7C284087410%7Cgb%7CEFC41080%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095769%7Cgb%7CEFC49399%2E1%7C.for.18767-20125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18767-20125.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18767-20125.gi%7C284095769%7Cgb%7CEFC49399%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088777%7Cgb%7CEFC42438%2E1%7C.for.18821-20125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18821-20125.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18821-20125.gi%7C284088777%7Cgb%7CEFC42438%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096300%7Cgb%7CEFC49928%2E1%7C.for.20271-31022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.20271-31022.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.20271-31022.gi%7C284096300%7Cgb%7CEFC49928%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.for.35827-36896.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.35827-36896.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.35827-36896.gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093627%7Cgb%7CEFC47264%2E1%7C.for.35878-38883.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.35878-38883.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.35878-38883.gi%7C284093627%7Cgb%7CEFC47264%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093553%7Cgb%7CEFC47190%2E1%7C.for.38660-42327.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.38660-42327.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.38660-42327.gi%7C284093553%7Cgb%7CEFC47190%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088699%7Cgb%7CEFC42361%2E1%7C.for.41842-43571.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41842-43571.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41842-43571.gi%7C284088699%7Cgb%7CEFC42361%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093661%7Cgb%7CEFC47298%2E1%7C.for.41803-44573.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41803-44573.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41803-44573.gi%7C284093661%7Cgb%7CEFC47298%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081561%7Cgb%7CEFC35518%2E1%7C.for.41782-43508.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41782-43508.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41782-43508.gi%7C284081561%7Cgb%7CEFC35518%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082242%7Cgb%7CEFC35988%2E1%7C.for.41800-43481.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41800-43481.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41800-43481.gi%7C284082242%7Cgb%7CEFC35988%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088654%7Cgb%7CEFC42316%2E1%7C.for.41833-43508.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41833-43508.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41833-43508.gi%7C284088654%7Cgb%7CEFC42316%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096156%7Cgb%7CEFC49785%2E1%7C.for.41836-43487.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41836-43487.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41836-43487.gi%7C284096156%7Cgb%7CEFC49785%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096936%7Cgb%7CEFC50563%2E1%7C.for.47476-49712.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.47476-49712.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.47476-49712.gi%7C284096936%7Cgb%7CEFC50563%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095549%7Cgb%7CEFC49179%2E1%7C.for.47515-49742.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.47515-49742.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.47515-49742.gi%7C284095549%7Cgb%7CEFC49179%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093648%7Cgb%7CEFC47285%2E1%7C.for.45949-50849.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.45949-50849.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.45949-50849.gi%7C284093648%7Cgb%7CEFC47285%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095906%7Cgb%7CEFC49535%2E1%7C.for.47530-49751.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.47530-49751.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.47530-49751.gi%7C284095906%7Cgb%7CEFC49535%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087958%7Cgb%7CEFC41624%2E1%7C.for.47503-49751.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.47503-49751.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.47503-49751.gi%7C284087958%7Cgb%7CEFC41624%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088520%7Cgb%7CEFC42183%2E1%7C.for.51477-53404.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.51477-53404.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.51477-53404.gi%7C284088520%7Cgb%7CEFC42183%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093550%7Cgb%7CEFC47187%2E1%7C.for.61571-62913.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.61571-62913.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.61571-62913.gi%7C284093550%7Cgb%7CEFC47187%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095323%7Cgb%7CEFC48954%2E1%7C.for.62265-63643.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.62265-63643.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.62265-63643.gi%7C284095323%7Cgb%7CEFC48954%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083272%7Cgb%7CEFC36977%2E1%7C.for.67536-70556.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.67536-70556.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.67536-70556.gi%7C284083272%7Cgb%7CEFC36977%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082602%7Cgb%7CEFC36317%2E1%7C.for.66036-69451.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.66036-69451.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.66036-69451.gi%7C284082602%7Cgb%7CEFC36317%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094585%7Cgb%7CEFC48219%2E1%7C.for.80675-81717.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.80675-81717.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.80675-81717.gi%7C284094585%7Cgb%7CEFC48219%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086165%7Cgb%7CEFC39843%2E1%7C.for.80961-82908.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.80961-82908.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.80961-82908.gi%7C284086165%7Cgb%7CEFC39843%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095450%7Cgb%7CEFC49081%2E1%7C.for.90632-92652.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.90632-92652.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.90632-92652.gi%7C284095450%7Cgb%7CEFC49081%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096532%7Cgb%7CEFC50160%2E1%7C.for.102826-104105.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.102826-104105.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.102826-104105.gi%7C284096532%7Cgb%7CEFC50160%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096604%7Cgb%7CEFC50232%2E1%7C.for.105563-107235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.105563-107235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.105563-107235.gi%7C284096604%7Cgb%7CEFC50232%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081521%7Cgb%7CEFC35491%2E1%7C.for.111090-112204.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.111090-112204.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.111090-112204.gi%7C284081521%7Cgb%7CEFC35491%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084639%7Cgb%7CEFC38329%2E1%7C.for.111030-113400.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.111030-113400.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.111030-113400.gi%7C284084639%7Cgb%7CEFC38329%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085362%7Cgb%7CEFC39046%2E1%7C.for.110985-113445.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.110985-113445.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.110985-113445.gi%7C284085362%7Cgb%7CEFC39046%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083208%7Cgb%7CEFC36914%2E1%7C.for.110076-113538.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.110076-113538.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.110076-113538.gi%7C284083208%7Cgb%7CEFC36914%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094695%7Cgb%7CEFC48328%2E1%7C.for.118409-122010.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.118409-122010.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.118409-122010.gi%7C284094695%7Cgb%7CEFC48328%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095109%7Cgb%7CEFC48741%2E1%7C.for.132648-134686.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.132648-134686.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.132648-134686.gi%7C284095109%7Cgb%7CEFC48741%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086161%7Cgb%7CEFC39839%2E1%7C.for.135931-138842.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.135931-138842.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.135931-138842.gi%7C284086161%7Cgb%7CEFC39839%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096519%7Cgb%7CEFC50147%2E1%7C.for.136030-138848.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.136030-138848.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.136030-138848.gi%7C284096519%7Cgb%7CEFC50147%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096247%7Cgb%7CEFC49875%2E1%7C.for.135931-138797.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.135931-138797.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.135931-138797.gi%7C284096247%7Cgb%7CEFC49875%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C25986841%7Cgb%7CAAM93756%2E1%7C.for.136051-138770.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.136051-138770.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.136051-138770.gi%7C25986841%7Cgb%7CAAM93756%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092652%7Cgb%7CEFC46293%2E1%7C.for.142341-144069.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142341-144069.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142341-144069.gi%7C284092652%7Cgb%7CEFC46293%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089938%7Cgb%7CEFC43592%2E1%7C.for.142602-143862.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142602-143862.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142602-143862.gi%7C284089938%7Cgb%7CEFC43592%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083518%7Cgb%7CEFC37220%2E1%7C.for.142308-144015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142308-144015.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142308-144015.gi%7C284083518%7Cgb%7CEFC37220%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095980%7Cgb%7CEFC49609%2E1%7C.for.142347-144039.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142347-144039.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142347-144039.gi%7C284095980%7Cgb%7CEFC49609%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091782%7Cgb%7CEFC45427%2E1%7C.for.142755-143961.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142755-143961.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142755-143961.gi%7C284091782%7Cgb%7CEFC45427%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085503%7Cgb%7CEFC39186%2E1%7C.for.142329-143964.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142329-143964.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142329-143964.gi%7C284085503%7Cgb%7CEFC39186%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093388%7Cgb%7CEFC47026%2E1%7C.for.142922-143862.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142922-143862.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142922-143862.gi%7C284093388%7Cgb%7CEFC47026%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095754%7Cgb%7CEFC49384%2E1%7C.for.142329-144069.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142329-144069.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142329-144069.gi%7C284095754%7Cgb%7CEFC49384%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096149%7Cgb%7CEFC49778%2E1%7C.for.144795-148300.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.144795-148300.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.144795-148300.gi%7C284096149%7Cgb%7CEFC49778%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C167966176%7Cgb%7CACA13169%2E1%7C.for.146940-147964.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.146940-147964.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.146940-147964.gi%7C167966176%7Cgb%7CACA13169%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092877%7Cgb%7CEFC46517%2E1%7C.for.147667-149081.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.147667-149081.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.147667-149081.gi%7C284092877%7Cgb%7CEFC46517%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092102%7Cgb%7CEFC45745%2E1%7C.for.152591-154551.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.152591-154551.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.152591-154551.gi%7C284092102%7Cgb%7CEFC45745%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096560%7Cgb%7CEFC50188%2E1%7C.for.157271-160187.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.157271-160187.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.157271-160187.gi%7C284096560%7Cgb%7CEFC50188%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097079%7Cgb%7CEFC50706%2E1%7C.for.170945-172743.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.170945-172743.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.170945-172743.gi%7C284097079%7Cgb%7CEFC50706%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080983%7Cgb%7CEFC35253%2E1%7C.for.186873-188374.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.186873-188374.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.186873-188374.gi%7C284080983%7Cgb%7CEFC35253%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081870%7Cgb%7CEFC35710%2E1%7C.for.187245-188218.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.187245-188218.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.187245-188218.gi%7C284081870%7Cgb%7CEFC35710%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096419%7Cgb%7CEFC50047%2E1%7C.for.187029-188311.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.187029-188311.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.187029-188311.gi%7C284096419%7Cgb%7CEFC50047%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084263%7Cgb%7CEFC37957%2E1%7C.for.187056-188302.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.187056-188302.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.187056-188302.gi%7C284084263%7Cgb%7CEFC37957%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090976%7Cgb%7CEFC44625%2E1%7C.for.186795-188311.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.186795-188311.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.186795-188311.gi%7C284090976%7Cgb%7CEFC44625%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082158%7Cgb%7CEFC35924%2E1%7C.for.186795-188311.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.186795-188311.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.186795-188311.gi%7C284082158%7Cgb%7CEFC35924%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094671%7Cgb%7CEFC48304%2E1%7C.for.186999-188311.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.186999-188311.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.186999-188311.gi%7C284094671%7Cgb%7CEFC48304%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086669%7Cgb%7CEFC40344%2E1%7C.for.187257-188377.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.187257-188377.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.187257-188377.gi%7C284086669%7Cgb%7CEFC40344%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084731%7Cgb%7CEFC38420%2E1%7C.for.188731-189859.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.188731-189859.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.188731-189859.gi%7C284084731%7Cgb%7CEFC38420%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091151%7Cgb%7CEFC44799%2E1%7C.for.188758-189922.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.188758-189922.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.188758-189922.gi%7C284091151%7Cgb%7CEFC44799%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092335%7Cgb%7CEFC45977%2E1%7C.for.189761-191601.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.189761-191601.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.189761-191601.gi%7C284092335%7Cgb%7CEFC45977%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084895%7Cgb%7CEFC38583%2E1%7C.for.192664-194631.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.192664-194631.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.192664-194631.gi%7C284084895%7Cgb%7CEFC38583%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084844%7Cgb%7CEFC38533%2E1%7C.for.192772-194592.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.192772-194592.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.192772-194592.gi%7C284084844%7Cgb%7CEFC38533%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096999%7Cgb%7CEFC50626%2E1%7C.for.195482-197340.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.195482-197340.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.195482-197340.gi%7C284096999%7Cgb%7CEFC50626%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090525%7Cgb%7CEFC44176%2E1%7C.for.204484-207515.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204484-207515.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204484-207515.gi%7C284090525%7Cgb%7CEFC44176%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092835%7Cgb%7CEFC46475%2E1%7C.for.206884-208643.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.206884-208643.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.206884-208643.gi%7C284092835%7Cgb%7CEFC46475%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087254%7Cgb%7CEFC40925%2E1%7C.for.206881-208613.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.206881-208613.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.206881-208613.gi%7C284087254%7Cgb%7CEFC40925%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082482%7Cgb%7CEFC36199%2E1%7C.for.210915-212620.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.210915-212620.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.210915-212620.gi%7C284082482%7Cgb%7CEFC36199%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080970%7Cgb%7CEFC35250%2E1%7C.for.226686-227677.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.226686-227677.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.226686-227677.gi%7C284080970%7Cgb%7CEFC35250%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092584%7Cgb%7CEFC46225%2E1%7C.for.228372-230302.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.228372-230302.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.228372-230302.gi%7C284092584%7Cgb%7CEFC46225%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092876%7Cgb%7CEFC46516%2E1%7C.for.235910-238395.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.235910-238395.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.235910-238395.gi%7C284092876%7Cgb%7CEFC46516%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091153%7Cgb%7CEFC44801%2E1%7C.for.241641-243023.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.241641-243023.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.241641-243023.gi%7C284091153%7Cgb%7CEFC44801%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090946%7Cgb%7CEFC44595%2E1%7C.for.241626-243062.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.241626-243062.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.241626-243062.gi%7C284090946%7Cgb%7CEFC44595%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092322%7Cgb%7CEFC45964%2E1%7C.for.241596-243501.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.241596-243501.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.241596-243501.gi%7C284092322%7Cgb%7CEFC45964%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083025%7Cgb%7CEFC36733%2E1%7C.for.244560-245581.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.244560-245581.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.244560-245581.gi%7C284083025%7Cgb%7CEFC36733%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093562%7Cgb%7CEFC47199%2E1%7C.for.244548-245870.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.244548-245870.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.244548-245870.gi%7C284093562%7Cgb%7CEFC47199%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091741%7Cgb%7CEFC45386%2E1%7C.for.244509-245861.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.244509-245861.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.244509-245861.gi%7C284091741%7Cgb%7CEFC45386%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092533%7Cgb%7CEFC46175%2E1%7C.for.247335-249267.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.247335-249267.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.247335-249267.gi%7C284092533%7Cgb%7CEFC46175%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:36 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:29 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 2 ...processing 1 of 2 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:50 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:50 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:50 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:50 now processing 0 total clusters:50 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:50 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:50 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:50 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:59 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:59 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:59 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.9352-10168.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.9352-10168.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.9352-10168.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.14463-15372.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.14463-15372.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.14463-15372.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.18981-32275.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.18981-32275.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.18981-32275.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.38696-44373.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.38696-44373.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.38696-44373.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.46148-51894.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.46148-51894.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.46148-51894.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.61731-63443.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.61731-63443.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.61731-63443.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.70279-71363.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.70279-71363.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.70279-71363.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.80874-81517.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.80874-81517.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.80874-81517.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.86239-87767.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.86239-87767.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.86239-87767.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.90388-93132.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.90388-93132.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.90388-93132.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.99226-100492.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.99226-100492.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.99226-100492.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.103005-107100.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.103005-107100.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.103005-107100.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.108829-109885.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.108829-109885.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.108829-109885.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.116023-117455.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.116023-117455.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.116023-117455.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.142507-144109.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.142507-144109.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.142507-144109.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.146252-148124.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.146252-148124.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.146252-148124.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.150432-151691.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.150432-151691.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.150432-151691.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.152337-154351.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.152337-154351.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.152337-154351.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.167493-169791.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.167493-169791.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.167493-169791.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.183953-188177.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.183953-188177.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.183953-188177.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.189960-191401.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.189960-191401.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.189960-191401.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.195681-197140.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.195681-197140.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.195681-197140.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.203899-204868.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.203899-204868.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.203899-204868.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.213061-214168.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.213061-214168.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.213061-214168.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.217919-218994.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.217919-218994.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.217919-218994.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.222876-224478.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.222876-224478.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.222876-224478.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.228571-230102.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.228571-230102.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.228571-230102.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.231305-232448.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.231305-232448.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.231305-232448.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.238438-243544.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.238438-243544.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.238438-243544.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.247385-250515.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.247385-250515.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.247385-250515.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.6536-7536.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.6536-7536.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.6536-7536.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.10977-13017.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.10977-13017.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.10977-13017.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.13115-14844.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.13115-14844.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.13115-14844.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.17047-18257.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.17047-18257.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.17047-18257.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.32275-34205.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.32275-34205.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.32275-34205.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.36077-38683.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.36077-38683.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.36077-38683.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.51937-57153.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.51937-57153.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.51937-57153.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.57523-59134.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.57523-59134.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.57523-59134.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.60008-61695.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.60008-61695.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.60008-61695.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.63036-64109.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.63036-64109.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.63036-64109.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/40_0.66235-70356.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/40_0.66235-70356.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/40_0.66235-70356.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/41_0.71031-71995.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/41_0.71031-71995.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/41_0.71031-71995.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/42_0.72195-73370.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/42_0.72195-73370.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/42_0.72195-73370.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/43_0.74091-78667.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/43_0.74091-78667.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/43_0.74091-78667.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/44_0.81127-82903.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/44_0.81127-82903.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/44_0.81127-82903.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/45_0.85294-86152.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/45_0.85294-86152.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/45_0.85294-86152.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/46_0.87986-88898.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/46_0.87986-88898.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/46_0.87986-88898.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/47_0.93752-95344.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/47_0.93752-95344.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/47_0.93752-95344.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/48_0.110275-115655.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/48_0.110275-115655.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/48_0.110275-115655.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/49_0.118582-121986.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/49_0.118582-121986.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/49_0.118582-121986.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/50_0.122183-131308.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/50_0.122183-131308.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/50_0.122183-131308.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/51_0.132669-135499.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/51_0.132669-135499.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/51_0.132669-135499.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/52_0.136097-138682.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/52_0.136097-138682.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/52_0.136097-138682.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/53_0.141223-142230.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/53_0.141223-142230.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/53_0.141223-142230.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/54_0.147866-148881.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/54_0.147866-148881.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/54_0.147866-148881.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/55_0.157470-159987.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/55_0.157470-159987.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/55_0.157470-159987.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/56_0.159998-161432.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/56_0.159998-161432.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/56_0.159998-161432.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/57_0.167005-167926.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/57_0.167005-167926.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/57_0.167005-167926.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/58_0.169548-170498.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/58_0.169548-170498.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/58_0.169548-170498.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/59_0.171144-172543.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/59_0.171144-172543.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/59_0.171144-172543.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/60_0.188930-189942.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/60_0.188930-189942.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/60_0.188930-189942.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/61_0.191954-194431.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/61_0.191954-194431.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/61_0.191954-194431.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/62_0.200842-201690.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/62_0.200842-201690.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/62_0.200842-201690.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/63_0.204518-208443.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/63_0.204518-208443.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/63_0.204518-208443.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/64_0.211114-212420.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/64_0.211114-212420.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/64_0.211114-212420.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/65_0.213914-214887.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/65_0.213914-214887.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/65_0.213914-214887.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/66_0.220064-221720.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/66_0.220064-221720.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/66_0.220064-221720.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/67_0.227763-228614.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/67_0.227763-228614.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/67_0.227763-228614.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/68_0.236109-238283.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/68_0.236109-238283.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/68_0.236109-238283.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/69_0.243175-245670.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/69_0.243175-245670.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/69_0.243175-245670.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/70_0.250116-250989.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/70_0.250116-250989.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/70_0.250116-250989.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C24 Length: 107845 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:2 current j:0 j_size:2 current j:1 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C24.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C24.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:6 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1193%7Clate.for.1-1367.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.1-1367.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.1-1367.120301b_Contig1193%7Clate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3787%7Clate.for.1-1517.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.1-1517.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.1-1517.Ar_EST_120301b_c3787%7Clate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14331%7Ccls.for.3201-4608.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.3201-4608.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.3201-4608.Ar_EST_120301b_c14331%7Ccls.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14231%7Cprotein.for.4815-6119.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.4815-6119.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.4815-6119.Ar_EST_120301b_c14231%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18348%7Ccll.for.14932-16445.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.14932-16445.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.14932-16445.Ar_EST_120301b_c18348%7Ccll.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19847%7Cgpi.for.16578-18442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.16578-18442.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.16578-18442.Ar_EST_120301b_c19847%7Cgpi.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11791%7Cgpi.for.17765-19120.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.17765-19120.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.17765-19120.Ar_EST_120301b_c11791%7Cgpi.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15639%7Ceb3rody02gk4bl.for.23474-26040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.23474-26040.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.23474-26040.Ar_EST_120301b_c15639%7Ceb3rody02gk4bl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1030%7Cprotein.for.23403-26040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.23403-26040.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.23403-26040.Ar_EST_120301b_c1030%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17732%7Cest_ssal_evd_45206.for.26353-27684.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.26353-27684.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.26353-27684.Ar_EST_120301b_c17732%7Cest_ssal_evd_45206.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18177%7Chx195251.for.28612-29656.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.28612-29656.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.28612-29656.Ar_EST_120301b_c18177%7Chx195251.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12724%7Cu4.for.34991-36090.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.34991-36090.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.34991-36090.Ar_EST_120301b_c12724%7Cu4.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8833%7Cprotein.for.35163-36584.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.35163-36584.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.35163-36584.Ar_EST_120301b_c8833%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13085%7C255376557.for.38544-39869.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.38544-39869.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.38544-39869.Ar_EST_120301b_c13085%7C255376557.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3699%7Ctpr.for.41370-43105.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.41370-43105.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.41370-43105.Ar_EST_120301b_c3699%7Ctpr.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c505%7Ccytochrome.for.42948-44200.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.42948-44200.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.42948-44200.Ar_EST_120301b_c505%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15493%7Chypothetical.for.49628-50870.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.49628-50870.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.49628-50870.Ar_EST_120301b_c15493%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2223%7C3-hydroxyisobutyryl-.for.50334-51728.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.50334-51728.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.50334-51728.Ar_EST_120301b_c2223%7C3-hydroxyisobutyryl-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13348%7C---NA---.for.50969-52069.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.50969-52069.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.50969-52069.Ar_EST_120301b_c13348%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8134%7CPJ1444.for.51579-53657.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.51579-53657.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.51579-53657.Ar_EST_120301b_c8134%7CPJ1444.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18835%7C---NA---.for.53933-55329.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.53933-55329.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.53933-55329.Ar_EST_120301b_c18835%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7681%7Ccell.for.53935-55251.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.53935-55251.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.53935-55251.Ar_EST_120301b_rep_c7681%7Ccell.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20521%7C---NA---.for.53935-55086.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.53935-55086.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.53935-55086.Ar_EST_120301b_rep_c20521%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13477%7C---NA---.for.56717-57809.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.56717-57809.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.56717-57809.Ar_EST_120301b_c13477%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7315%7Coxysterol-binding.for.57696-59731.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.57696-59731.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.57696-59731.Ar_EST_120301b_rep_c7315%7Coxysterol-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7217%7Coxysterol-binding.for.57465-59619.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.57465-59619.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.57465-59619.Ar_EST_120301b_rep_c7217%7Coxysterol-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7183%7Coxysterol-binding.for.57606-59167.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.57606-59167.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.57606-59167.Ar_EST_120301b_rep_c7183%7Coxysterol-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7334%7Coxysterol.for.58089-59443.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.58089-59443.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.58089-59443.Ar_EST_120301b_rep_c7334%7Coxysterol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12557%7Cfm132192.for.59433-60491.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.59433-60491.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.59433-60491.Ar_EST_120301b_c12557%7Cfm132192.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18461%7Cbactericidal.for.63637-65201.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.63637-65201.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.63637-65201.Ar_EST_120301b_c18461%7Cbactericidal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9729%7Cmucin-.for.66148-67658.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.66148-67658.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.66148-67658.Ar_EST_120301b_c9729%7Cmucin-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9330%7Cuvb-resistance.for.68944-70534.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.68944-70534.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.68944-70534.Ar_EST_120301b_c9330%7Cuvb-resistance.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10894%7Cdomain-containing.for.71789-72913.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.71789-72913.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.71789-72913.Ar_EST_120301b_c10894%7Cdomain-containing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3071%7Cdomain-containing.for.70951-72815.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.70951-72815.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.70951-72815.Ar_EST_120301b_c3071%7Cdomain-containing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8995%7Cdomain-containing.for.72568-74088.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.72568-74088.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.72568-74088.Ar_EST_120301b_c8995%7Cdomain-containing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3896%7Csenescence-associated.for.72282-73682.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.72282-73682.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.72282-73682.Ar_EST_120301b_c3896%7Csenescence-associated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1150%7Caara_dicdi.for.73122-74881.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.73122-74881.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.73122-74881.Ar_EST_120301b_c1150%7Caara_dicdi.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9186%7C40s.for.76695-77870.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.76695-77870.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.76695-77870.Ar_EST_120301b_rep_c9186%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1960%7Cmeloidogyne.for.78849-80178.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.78849-80178.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.78849-80178.Ar_EST_120301b_c1960%7Cmeloidogyne.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10660%7Canolis.for.79275-80557.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.79275-80557.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.79275-80557.Ar_EST_120301b_c10660%7Canolis.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16062%7Cmitochondrial.for.79842-81299.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.79842-81299.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.79842-81299.Ar_EST_120301b_c16062%7Cmitochondrial.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18366%7C---NA---.for.81065-82374.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.81065-82374.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.81065-82374.Ar_EST_120301b_c18366%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8209%7Cudp-glucose.for.82553-83976.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.82553-83976.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.82553-83976.Ar_EST_120301b_c8209%7Cudp-glucose.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19592%7Cudp-glucose.for.82194-83523.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.82194-83523.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.82194-83523.Ar_EST_120301b_c19592%7Cudp-glucose.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c201%7Cperoxidase.for.89062-90517.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.89062-90517.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.89062-90517.Ar_EST_120301b_c201%7Cperoxidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14840%7Cankyrin.for.90146-91704.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.90146-91704.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.90146-91704.Ar_EST_120301b_c14840%7Cankyrin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17608%7Chydroxycinnamoyl-coenzyme.for.91385-92665.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.91385-92665.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.91385-92665.Ar_EST_120301b_c17608%7Chydroxycinnamoyl-coenzyme.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1727%7Cprotein.for.93442-94838.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.93442-94838.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.93442-94838.Ar_EST_120301b_c1727%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12096%7Cbj057728.for.94158-95401.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.94158-95401.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.94158-95401.Ar_EST_120301b_c12096%7Cbj057728.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2186%7C03ju.for.94951-96270.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.94951-96270.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.94951-96270.Ar_EST_120301b_c2186%7C03ju.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig59%7Cprotein.for.96335-98895.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.96335-98895.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.96335-98895.120301b_Contig59%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1249%7Ctype.for.100365-101735.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.100365-101735.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.100365-101735.Ar_EST_120301b_c1249%7Ctype.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6838%7Cchaperone.for.99052-100777.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.99052-100777.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.99052-100777.Ar_EST_120301b_rep_c6838%7Cchaperone.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig246%7Cprotein.for.98366-101485.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.98366-101485.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.98366-101485.120301b_Contig246%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10371%7Cviral.for.101874-103650.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.101874-103650.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.101874-103650.Ar_EST_120301b_c10371%7Cviral.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1846%7Ccu580856.for.103580-104910.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.103580-104910.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.103580-104910.Ar_EST_120301b_c1846%7Ccu580856.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10785%7C---NA---.for.105911-107157.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.105911-107157.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.105911-107157.Ar_EST_120301b_c10785%7C---NA---.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:34 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:27 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:43 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:50 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:49 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:39 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:32 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:42 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:38 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:19 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093049%7Cgb%7CEFC46688%2E1%7C.for.16805-18843.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.16805-18843.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.16805-18843.gi%7C284093049%7Cgb%7CEFC46688%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082549%7Cgb%7CEFC36265%2E1%7C.for.18864-20806.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.18864-20806.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.18864-20806.gi%7C284082549%7Cgb%7CEFC36265%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.30087-33385.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33385.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33385.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.for.30099-33343.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33343.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33343.gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.for.30105-33424.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30105-33424.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30105-33424.gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085983%7Cgb%7CEFC39663%2E1%7C.for.30096-33337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30096-33337.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30096-33337.gi%7C284085983%7Cgb%7CEFC39663%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.for.30099-33337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33337.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33337.gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.for.30102-33373.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33373.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33373.gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.for.30099-32320.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-32320.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-32320.gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088147%7Cgb%7CEFC41812%2E1%7C.for.30102-33343.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33343.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33343.gi%7C284088147%7Cgb%7CEFC41812%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.for.30102-33400.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33400.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33400.gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.for.30093-33382.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30093-33382.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30093-33382.gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.for.30087-33394.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33394.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33394.gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.for.30105-33337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30105-33337.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30105-33337.gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.for.30087-33346.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33346.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33346.gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082687%7Cgb%7CEFC36400%2E1%7C.for.30087-33403.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33403.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33403.gi%7C284082687%7Cgb%7CEFC36400%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091293%7Cgb%7CEFC44940%2E1%7C.for.30090-33337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30090-33337.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30090-33337.gi%7C284091293%7Cgb%7CEFC44940%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.for.30093-33346.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30093-33346.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30093-33346.gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.for.30099-33343.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33343.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33343.gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097002%7Cgb%7CEFC50629%2E1%7C.for.30096-33394.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30096-33394.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30096-33394.gi%7C284097002%7Cgb%7CEFC50629%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.for.30099-33469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33469.gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092908%7Cgb%7CEFC46548%2E1%7C.for.30099-33346.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33346.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33346.gi%7C284092908%7Cgb%7CEFC46548%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.for.30099-33403.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33403.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33403.gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.for.30072-33400.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30072-33400.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30072-33400.gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.for.30048-33337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30048-33337.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30048-33337.gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094023%7Cgb%7CEFC47658%2E1%7C.for.29985-33346.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.29985-33346.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.29985-33346.gi%7C284094023%7Cgb%7CEFC47658%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.for.30102-33343.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33343.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33343.gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.for.30105-31525.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30105-31525.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30105-31525.gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092204%7Cgb%7CEFC45847%2E1%7C.for.30099-33394.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33394.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33394.gi%7C284092204%7Cgb%7CEFC45847%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.for.30099-33337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33337.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33337.gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081757%7Cgb%7CEFC35637%2E1%7C.for.30099-33409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33409.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33409.gi%7C284081757%7Cgb%7CEFC35637%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.for.30042-33352.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30042-33352.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30042-33352.gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.for.30102-33340.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33340.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33340.gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.for.30015-32359.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30015-32359.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30015-32359.gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085299%7Cgb%7CEFC38984%2E1%7C.for.30087-33346.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33346.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33346.gi%7C284085299%7Cgb%7CEFC38984%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087676%7Cgb%7CEFC41344%2E1%7C.for.30093-33430.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30093-33430.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30093-33430.gi%7C284087676%7Cgb%7CEFC41344%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080808%7Cgb%7CEFC35194%2E1%7C.for.30102-33337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33337.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33337.gi%7C284080808%7Cgb%7CEFC35194%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.for.30132-32341.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30132-32341.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30132-32341.gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091375%7Cgb%7CEFC45022%2E1%7C.for.39920-41115.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.39920-41115.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.39920-41115.gi%7C284091375%7Cgb%7CEFC45022%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087092%7Cgb%7CEFC40764%2E1%7C.for.39695-41100.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.39695-41100.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.39695-41100.gi%7C284087092%7Cgb%7CEFC40764%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089341%7Cgb%7CEFC42999%2E1%7C.for.43545-45547.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.43545-45547.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.43545-45547.gi%7C284089341%7Cgb%7CEFC42999%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092455%7Cgb%7CEFC46097%2E1%7C.for.43533-45508.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.43533-45508.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.43533-45508.gi%7C284092455%7Cgb%7CEFC46097%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087860%7Cgb%7CEFC41527%2E1%7C.for.44061-45661.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.44061-45661.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.44061-45661.gi%7C284087860%7Cgb%7CEFC41527%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092586%7Cgb%7CEFC46227%2E1%7C.for.65301-66295.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.65301-66295.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.65301-66295.gi%7C284092586%7Cgb%7CEFC46227%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091528%7Cgb%7CEFC45174%2E1%7C.for.76723-77714.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.76723-77714.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.76723-77714.gi%7C284091528%7Cgb%7CEFC45174%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087484%7Cgb%7CEFC41153%2E1%7C.for.79834-81594.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.79834-81594.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.79834-81594.gi%7C284087484%7Cgb%7CEFC41153%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:8 now processing 0 total clusters:8 now processing 0 total clusters:8 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:8 now processing 0 total clusters:8 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:8 now processing 0 total clusters:8 now processing 0 total clusters:8 now processing 0 in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:5 now processing 0 total clusters:5 now processing 0 ...processing 0 of 24 ...processing 1 of 24 ...processing 2 of 24 ...processing 3 of 24 ...processing 4 of 24 ...processing 5 of 24 ...processing 6 of 24 ...processing 7 of 24 ...processing 8 of 24 ...processing 9 of 24 ...processing 10 of 24 ...processing 11 of 24 ...processing 12 of 24 ...processing 13 of 24 ...processing 14 of 24 ...processing 15 of 24 ...processing 16 of 24 ...processing 17 of 24 ...processing 18 of 24 ...processing 19 of 24 ...processing 20 of 24 ...processing 21 of 24 ...processing 22 of 24 ...processing 23 of 24 total clusters:5 now processing 0 total clusters:5 now processing 0 total clusters:5 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:17 now processing 0 total clusters:17 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 19 ...processing 1 of 19 ...processing 2 of 19 ...processing 3 of 19 ...processing 4 of 19 ...processing 5 of 19 ...processing 6 of 19 ...processing 7 of 19 ...processing 8 of 19 ...processing 9 of 19 ...processing 10 of 19 ...processing 11 of 19 ...processing 12 of 19 ...processing 13 of 19 ...processing 14 of 19 ...processing 15 of 19 ...processing 16 of 19 ...processing 17 of 19 ...processing 18 of 19 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.15131-16245.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.15131-16245.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.15131-16245.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.26552-27484.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.26552-27484.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.26552-27484.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.28610-29472.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.28610-29472.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.28610-29472.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.38743-39674.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.38743-39674.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.38743-39674.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.41556-42905.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.41556-42905.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.41556-42905.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.43142-44000.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.43142-44000.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.43142-44000.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.57628-59531.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.57628-59531.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.57628-59531.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.63821-65003.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.63821-65003.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.63821-65003.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.79048-80363.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.79048-80363.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.79048-80363.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.81264-82174.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.81264-82174.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.81264-82174.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.82393-83776.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.82393-83776.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.82393-83776.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.89253-90332.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.89253-90332.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.89253-90332.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.93641-94643.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.93641-94643.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.93641-94643.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.95103-96070.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.95103-96070.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.95103-96070.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.98565-101535.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.98565-101535.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.98565-101535.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.102073-103452.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.102073-103452.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.102073-103452.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.106110-106962.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.106110-106962.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.106110-106962.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.0-1317.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.0-1317.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.0-1317.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.3400-5919.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.3400-5919.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.3400-5919.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.16775-18643.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.16775-18643.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.16775-18643.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.19063-20606.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.19063-20606.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.19063-20606.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.23602-24576.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.23602-24576.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.23602-24576.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.30214-33224.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.30214-33224.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.30214-33224.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.35162-36384.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.35162-36384.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.35162-36384.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.40119-40915.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.40119-40915.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.40119-40915.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.43732-45461.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.43732-45461.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.43732-45461.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.49827-53513.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.49827-53513.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.49827-53513.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.54132-55129.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.54132-55129.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.54132-55129.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.56916-57609.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.56916-57609.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.56916-57609.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.59632-60457.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.59632-60457.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.59632-60457.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.65500-66095.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.65500-66095.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.65500-66095.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.66347-67458.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.66347-67458.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.66347-67458.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.69135-70334.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.69135-70334.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.69135-70334.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.71150-74681.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.71150-74681.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.71150-74681.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.76922-77514.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.76922-77514.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.76922-77514.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.80033-81394.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.80033-81394.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.80033-81394.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.90345-91504.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.90345-91504.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.90345-91504.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.91584-92465.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.91584-92465.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.91584-92465.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.103777-104710.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.103777-104710.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.103777-104710.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C25 Length: 12557 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:1 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C25.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C25.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12213%7Cserum.for.4686-6013.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.4686-6013.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.4686-6013.Ar_EST_120301b_c12213%7Cserum.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13871%7Cserum.for.4474-5739.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.4474-5739.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.4474-5739.Ar_EST_120301b_c13871%7Cserum.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16373%7Cserum.for.4474-6013.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.4474-6013.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.4474-6013.Ar_EST_120301b_c16373%7Cserum.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17460%7Cpredicted.for.7767-9114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.7767-9114.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.7767-9114.Ar_EST_120301b_c17460%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12919%7Cca48en0002_i.for.8552-9892.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.8552-9892.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.8552-9892.Ar_EST_120301b_c12919%7Cca48en0002_i.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2764%7Cnadh.for.11528-12557.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.11528-12557.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.11528-12557.Ar_EST_120301b_c2764%7Cnadh.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:5 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:5 now processing 0 total clusters:5 now processing 0 total clusters:5 now processing 0 total clusters:5 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:7 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:10 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:5 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:9 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:6 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:14 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:12 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:10 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:5 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:8 hits collecting blastx reports polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091972%7Cgb%7CEFC45616%2E1%7C.for.5442-6683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.5442-6683.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.5442-6683.gi%7C284091972%7Cgb%7CEFC45616%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:4 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:4 now processing 0 total clusters:4 now processing 0 total clusters:4 now processing 0 in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:1 now processing 0 annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.4673-5813.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.4673-5813.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.4673-5813.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.7966-9692.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.7966-9692.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.7966-9692.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.11727-12557.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.11727-12557.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.11727-12557.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C26 Length: 30228 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:3 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:1 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C26.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C26.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1435%7Cshort-chain.for.1-966.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1-966.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1-966.Ar_EST_120301b_c1435%7Cshort-chain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4547%7Cpeptidyl-prolyl.for.533-2079.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.533-2079.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.533-2079.Ar_EST_120301b_rep_c4547%7Cpeptidyl-prolyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13051%7Cdiphosphomevalonate.for.2604-3822.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.2604-3822.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.2604-3822.Ar_EST_120301b_c13051%7Cdiphosphomevalonate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9753%7Cdiphosphomevalonate.for.3048-4517.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.3048-4517.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.3048-4517.Ar_EST_120301b_c9753%7Cdiphosphomevalonate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17359%7Cpredicted.for.4191-5513.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.4191-5513.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.4191-5513.Ar_EST_120301b_c17359%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16806%7Cheat.for.6535-7644.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6535-7644.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6535-7644.Ar_EST_120301b_rep_c16806%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6111%7Cunq118-.for.7137-8101.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.7137-8101.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.7137-8101.Ar_EST_120301b_rep_c6111%7Cunq118-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20263%7Cm105c12r.for.6734-7787.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6734-7787.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6734-7787.Ar_EST_120301b_rep_c20263%7Cm105c12r.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6339%7C---NA---.for.6541-7790.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6541-7790.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6541-7790.Ar_EST_120301b_rep_c6339%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4077%7Cprotein.for.6643-8283.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6643-8283.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6643-8283.Ar_EST_120301b_rep_c4077%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20244%7Clim.for.6558-7789.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6558-7789.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6558-7789.Ar_EST_120301b_rep_c20244%7Clim.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11314%7Cgtp-binding.for.6970-8126.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6970-8126.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6970-8126.Ar_EST_120301b_rep_c11314%7Cgtp-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20404%7Cprotein.for.7103-8081.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.7103-8081.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.7103-8081.Ar_EST_120301b_rep_c20404%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19526%7Ccazo.for.6535-7828.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6535-7828.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6535-7828.Ar_EST_120301b_rep_c19526%7Ccazo.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9415%7C000826otya999025ht.for.7770-9085.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.7770-9085.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.7770-9085.Ar_EST_120301b_c9415%7C000826otya999025ht.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13240%7Cprotein.for.12830-14321.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.12830-14321.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.12830-14321.Ar_EST_120301b_c13240%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4447%7Cpathogenesis-related.for.16744-18213.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.16744-18213.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.16744-18213.Ar_EST_120301b_rep_c4447%7Cpathogenesis-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1392%7Cglycine.for.18463-20388.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.18463-20388.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.18463-20388.120301b_Contig1392%7Cglycine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig112%7Cglycine.for.19277-20741.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.19277-20741.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.19277-20741.120301b_Contig112%7Cglycine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2532%7Cglycine.for.17984-19620.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.17984-19620.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.17984-19620.Ar_EST_120301b_c2532%7Cglycine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2582%7Cglycine.for.20162-21458.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.20162-21458.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.20162-21458.Ar_EST_120301b_c2582%7Cglycine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1819%7Cglycine.for.20617-22092.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.20617-22092.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.20617-22092.Ar_EST_120301b_c1819%7Cglycine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18083%7Cpredicted.for.21304-22699.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.21304-22699.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.21304-22699.Ar_EST_120301b_c18083%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1288%7Csec1.for.22782-24229.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.22782-24229.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.22782-24229.Ar_EST_120301b_c1288%7Csec1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4755%7Cring.for.22158-23653.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.22158-23653.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.22158-23653.Ar_EST_120301b_rep_c4755%7Cring.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13389%7Cproliferation-associated.for.22647-23597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.22647-23597.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.22647-23597.Ar_EST_120301b_rep_c13389%7Cproliferation-associated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18239%7Cprotein.for.24795-26024.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.24795-26024.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.24795-26024.Ar_EST_120301b_c18239%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14682%7Cfy377012.for.25095-26211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.25095-26211.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.25095-26211.Ar_EST_120301b_c14682%7Cfy377012.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12457%7Cdk457596.for.28008-29513.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.28008-29513.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.28008-29513.Ar_EST_120301b_c12457%7Cdk457596.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:43 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:30 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:34 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:46 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:30 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:39 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:24 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:33 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:35 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:29 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081155%7Cgb%7CEFC35313%2E1%7C.for.767-2080.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2080.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2080.gi%7C284081155%7Cgb%7CEFC35313%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092983%7Cgb%7CEFC46623%2E1%7C.for.767-2080.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2080.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2080.gi%7C284092983%7Cgb%7CEFC46623%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096875%7Cgb%7CEFC50502%2E1%7C.for.803-2092.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.803-2092.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.803-2092.gi%7C284096875%7Cgb%7CEFC50502%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090267%7Cgb%7CEFC43920%2E1%7C.for.767-2017.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2017.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2017.gi%7C284090267%7Cgb%7CEFC43920%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092579%7Cgb%7CEFC46220%2E1%7C.for.800-2023.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.800-2023.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.800-2023.gi%7C284092579%7Cgb%7CEFC46220%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093592%7Cgb%7CEFC47229%2E1%7C.for.972-2062.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.972-2062.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.972-2062.gi%7C284093592%7Cgb%7CEFC47229%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089692%7Cgb%7CEFC43348%2E1%7C.for.800-2068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.800-2068.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.800-2068.gi%7C284089692%7Cgb%7CEFC43348%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093109%7Cgb%7CEFC46748%2E1%7C.for.800-2023.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.800-2023.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.800-2023.gi%7C284093109%7Cgb%7CEFC46748%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085514%7Cgb%7CEFC39197%2E1%7C.for.542-2104.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.542-2104.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.542-2104.gi%7C284085514%7Cgb%7CEFC39197%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088464%7Cgb%7CEFC42127%2E1%7C.for.767-2020.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2020.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2020.gi%7C284088464%7Cgb%7CEFC42127%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094883%7Cgb%7CEFC48516%2E1%7C.for.752-2098.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.752-2098.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.752-2098.gi%7C284094883%7Cgb%7CEFC48516%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095464%7Cgb%7CEFC49095%2E1%7C.for.767-2074.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2074.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2074.gi%7C284095464%7Cgb%7CEFC49095%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090503%7Cgb%7CEFC44154%2E1%7C.for.767-2074.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2074.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2074.gi%7C284090503%7Cgb%7CEFC44154%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086458%7Cgb%7CEFC40134%2E1%7C.for.767-1996.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-1996.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-1996.gi%7C284086458%7Cgb%7CEFC40134%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090230%7Cgb%7CEFC43883%2E1%7C.for.1576-3068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1576-3068.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1576-3068.gi%7C284090230%7Cgb%7CEFC43883%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081326%7Cgb%7CEFC35393%2E1%7C.for.1795-2795.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1795-2795.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1795-2795.gi%7C284081326%7Cgb%7CEFC35393%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092568%7Cgb%7CEFC46209%2E1%7C.for.1464-3077.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1464-3077.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1464-3077.gi%7C284092568%7Cgb%7CEFC46209%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089451%7Cgb%7CEFC43108%2E1%7C.for.1573-3146.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1573-3146.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1573-3146.gi%7C284089451%7Cgb%7CEFC43108%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089702%7Cgb%7CEFC43358%2E1%7C.for.1735-2825.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1735-2825.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1735-2825.gi%7C284089702%7Cgb%7CEFC43358%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084444%7Cgb%7CEFC38137%2E1%7C.for.1341-3107.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1341-3107.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1341-3107.gi%7C284084444%7Cgb%7CEFC38137%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082844%7Cgb%7CEFC36555%2E1%7C.for.2605-4508.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.2605-4508.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.2605-4508.gi%7C284082844%7Cgb%7CEFC36555%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091841%7Cgb%7CEFC45486%2E1%7C.for.18327-22000.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.18327-22000.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.18327-22000.gi%7C284091841%7Cgb%7CEFC45486%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081842%7Cgb%7CEFC35690%2E1%7C.for.22129-23267.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.22129-23267.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.22129-23267.gi%7C284081842%7Cgb%7CEFC35690%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:5 now processing 0 ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:5 now processing 0 total clusters:5 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:5 now processing 0 total clusters:5 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:5 now processing 0 ...processing 0 of 11 ...processing 1 of 11 ...processing 2 of 11 ...processing 3 of 11 ...processing 4 of 11 ...processing 5 of 11 ...processing 6 of 11 ...processing 7 of 11 ...processing 8 of 11 ...processing 9 of 11 ...processing 10 of 11 total clusters:5 now processing 0 total clusters:5 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:5 now processing 0 total clusters:5 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:7 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:7 now processing 0 total clusters:7 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:7 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.741-1904.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.741-1904.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.741-1904.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.4379-5313.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.4379-5313.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.4379-5313.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.6734-7628.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.6734-7628.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.6734-7628.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.7969-8885.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.7969-8885.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.7969-8885.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.18183-21892.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.18183-21892.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.18183-21892.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.28207-29347.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.28207-29347.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.28207-29347.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.0-766.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.0-766.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.0-766.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.1540-4317.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.1540-4317.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.1540-4317.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.13029-14137.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.13029-14137.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.13029-14137.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.16943-18013.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.16943-18013.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.16943-18013.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.21503-24123.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.21503-24123.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.21503-24123.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C28 Length: 140015 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C28.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C28.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:4 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16986%7Cvcdc13845.for.460-1786.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.460-1786.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.460-1786.Ar_EST_120301b_c16986%7Cvcdc13845.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11015%7Cmgc84566.for.4593-6206.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.4593-6206.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.4593-6206.Ar_EST_120301b_c11015%7Cmgc84566.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11527%7Chypothetical.for.5457-7204.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.5457-7204.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.5457-7204.Ar_EST_120301b_c11527%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16112%7Cvps28.for.5450-6585.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.5450-6585.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.5450-6585.Ar_EST_120301b_c16112%7Cvps28.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1268%7Creep3.for.7225-8749.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.7225-8749.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.7225-8749.Ar_EST_120301b_c1268%7Creep3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12533%7C---NA---.for.9019-10308.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.9019-10308.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.9019-10308.Ar_EST_120301b_c12533%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1967%7C3.for.7966-10076.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.7966-10076.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.7966-10076.Ar_EST_120301b_c1967%7C3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10582%7Cqct.for.9913-11212.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.9913-11212.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.9913-11212.Ar_EST_120301b_c10582%7Cqct.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c343%7Ckelch.for.10506-11991.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.10506-11991.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.10506-11991.Ar_EST_120301b_c343%7Ckelch.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3655%7Calpha-mannosidase.for.11467-14155.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.11467-14155.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.11467-14155.Ar_EST_120301b_c3655%7Calpha-mannosidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c499%7Cglycosyl.for.13565-15516.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.13565-15516.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.13565-15516.Ar_EST_120301b_c499%7Cglycosyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c650%7Cfq204399.for.15296-16768.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.15296-16768.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.15296-16768.Ar_EST_120301b_c650%7Cfq204399.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12233%7Cautophagy-related.for.16224-17667.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.16224-17667.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.16224-17667.Ar_EST_120301b_c12233%7Cautophagy-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10021%7Ceukaryotic.for.19860-21179.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.19860-21179.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.19860-21179.Ar_EST_120301b_c10021%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13248%7Chypothetical.for.26913-28208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.26913-28208.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.26913-28208.Ar_EST_120301b_c13248%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3283%7Cdenn.for.27515-29594.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.27515-29594.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.27515-29594.Ar_EST_120301b_c3283%7Cdenn.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13847%7Cprotein.for.34193-35519.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.34193-35519.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.34193-35519.Ar_EST_120301b_c13847%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15634%7Cdna.for.35289-36838.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.35289-36838.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.35289-36838.Ar_EST_120301b_c15634%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9717%7CUncharacterized.for.38490-40142.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.38490-40142.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.38490-40142.Ar_EST_120301b_c9717%7CUncharacterized.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15012%7Cleukocyte.for.39997-41185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.39997-41185.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.39997-41185.Ar_EST_120301b_c15012%7Cleukocyte.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10635%7Cserine.for.40921-42054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40921-42054.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40921-42054.Ar_EST_120301b_c10635%7Cserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig650%7Cserine.for.41091-43327.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41091-43327.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41091-43327.120301b_Contig650%7Cserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c731%7Cfn028540.for.42571-43798.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.42571-43798.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.42571-43798.Ar_EST_120301b_c731%7Cfn028540.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9323%7Caplysia.for.42974-44766.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.42974-44766.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.42974-44766.Ar_EST_120301b_c9323%7Caplysia.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12855%7Ccbwb.for.46476-47874.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.46476-47874.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.46476-47874.Ar_EST_120301b_c12855%7Ccbwb.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17067%7Csentrin-specific.for.47159-48553.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.47159-48553.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.47159-48553.Ar_EST_120301b_c17067%7Csentrin-specific.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5223%7Cimsp1_venph.for.56711-58040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.56711-58040.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.56711-58040.Ar_EST_120301b_rep_c5223%7Cimsp1_venph.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17363%7Cpredicted.for.57604-58980.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.57604-58980.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.57604-58980.Ar_EST_120301b_c17363%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15345%7Cats1.for.58530-59811.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.58530-59811.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.58530-59811.Ar_EST_120301b_c15345%7Cats1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15400%7Csa2-vi-b8.for.61106-62363.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.61106-62363.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.61106-62363.Ar_EST_120301b_c15400%7Csa2-vi-b8.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c653%7Ccytochrome.for.69192-71656.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.69192-71656.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.69192-71656.Ar_EST_120301b_c653%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6854%7Cmedium-chain.for.69883-71610.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.69883-71610.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.69883-71610.Ar_EST_120301b_rep_c6854%7Cmedium-chain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5386%7Crelated.for.69897-71031.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.69897-71031.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.69897-71031.Ar_EST_120301b_rep_c5386%7Crelated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2281%7Ckti12.for.71371-72941.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.71371-72941.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.71371-72941.Ar_EST_120301b_c2281%7Ckti12.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12014%7Cprotein.for.74568-76292.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.74568-76292.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.74568-76292.Ar_EST_120301b_c12014%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2496%7Cloc496076.for.75620-77212.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.75620-77212.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.75620-77212.Ar_EST_120301b_c2496%7Cloc496076.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13121%7Cubiquitin-conjugating.for.76567-77772.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.76567-77772.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.76567-77772.Ar_EST_120301b_c13121%7Cubiquitin-conjugating.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17049%7Cubiquitin-conjugating.for.76656-78111.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.76656-78111.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.76656-78111.Ar_EST_120301b_c17049%7Cubiquitin-conjugating.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15707%7Cubiquitin-conjugating.for.77963-79236.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.77963-79236.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.77963-79236.Ar_EST_120301b_c15707%7Cubiquitin-conjugating.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19531%7Ccytochrome.for.83617-84850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.83617-84850.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.83617-84850.Ar_EST_120301b_rep_c19531%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20458%7Cg5p_21469.for.82987-84183.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82987-84183.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82987-84183.Ar_EST_120301b_rep_c20458%7Cg5p_21469.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig525%7Ccytochrome.for.82529-84894.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82529-84894.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82529-84894.120301b_Contig525%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11444%7Ccytochrome.for.82958-84201.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82958-84201.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82958-84201.Ar_EST_120301b_rep_c11444%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20388%7Ccytochrome.for.82934-84490.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82934-84490.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82934-84490.Ar_EST_120301b_rep_c20388%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12324%7Cprobable.for.83655-84889.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.83655-84889.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.83655-84889.Ar_EST_120301b_rep_c12324%7Cprobable.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20161%7Csoluble.for.82773-83790.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82773-83790.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82773-83790.Ar_EST_120301b_rep_c20161%7Csoluble.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig757%7Cpredicted.for.84687-86383.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.84687-86383.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.84687-86383.120301b_Contig757%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig881%7Cariadne-like.for.85969-88271.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.85969-88271.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.85969-88271.120301b_Contig881%7Cariadne-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2491%7Cprotein.for.88092-90169.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.88092-90169.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.88092-90169.Ar_EST_120301b_c2491%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17100%7Csenescence-associated.for.90025-91440.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.90025-91440.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.90025-91440.Ar_EST_120301b_c17100%7Csenescence-associated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16583%7Ccolon.for.90585-91993.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.90585-91993.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.90585-91993.Ar_EST_120301b_c16583%7Ccolon.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15294%7Cpoly.for.91935-93211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.91935-93211.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.91935-93211.Ar_EST_120301b_c15294%7Cpoly.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig697%7Cankrd32.for.97243-98654.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.97243-98654.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.97243-98654.120301b_Contig697%7Cankrd32.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8635%7Cbrct.for.98441-100125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.98441-100125.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.98441-100125.Ar_EST_120301b_c8635%7Cbrct.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12958%7Cphosphoenolpyruvate.for.99382-100569.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99382-100569.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99382-100569.Ar_EST_120301b_rep_c12958%7Cphosphoenolpyruvate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7209%7Cphosphoenolpyruvate.for.99366-101327.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99366-101327.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99366-101327.Ar_EST_120301b_rep_c7209%7Cphosphoenolpyruvate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13873%7Cphosphoenolpyruvate.for.100295-101322.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.100295-101322.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.100295-101322.Ar_EST_120301b_rep_c13873%7Cphosphoenolpyruvate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4052%7Cphosphoenolpyruvate.for.99339-102017.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99339-102017.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99339-102017.Ar_EST_120301b_rep_c4052%7Cphosphoenolpyruvate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5671%7Cphosphoenolpyruvate.for.99792-101500.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99792-101500.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99792-101500.Ar_EST_120301b_rep_c5671%7Cphosphoenolpyruvate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4277%7Cphosphoenolpyruvate.for.100302-101725.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.100302-101725.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.100302-101725.Ar_EST_120301b_rep_c4277%7Cphosphoenolpyruvate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16128%7Ctranslation.for.101948-103355.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.101948-103355.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.101948-103355.Ar_EST_120301b_c16128%7Ctranslation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15868%7Ckn511.for.102976-104447.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.102976-104447.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.102976-104447.Ar_EST_120301b_c15868%7Ckn511.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7068%7C%28%2B%29-neomenthol.for.105801-107350.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.105801-107350.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.105801-107350.Ar_EST_120301b_rep_c7068%7C%28%2B%29-neomenthol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10200%7Cmetaxin.for.107922-109515.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.107922-109515.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.107922-109515.Ar_EST_120301b_c10200%7Cmetaxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17456%7Cactinin-like.for.114899-116189.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.114899-116189.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.114899-116189.Ar_EST_120301b_c17456%7Cactinin-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig155%7Cww.for.115764-117485.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.115764-117485.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.115764-117485.120301b_Contig155%7Cww.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c522%7Cprotein.for.116877-118241.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.116877-118241.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.116877-118241.Ar_EST_120301b_c522%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14850%7Ccayc.for.118074-119429.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.118074-119429.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.118074-119429.Ar_EST_120301b_c14850%7Ccayc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1195%7Chypothetical.for.119558-121154.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.119558-121154.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.119558-121154.Ar_EST_120301b_c1195%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c724%7Chypothetical.for.118804-120405.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.118804-120405.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.118804-120405.Ar_EST_120301b_c724%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13008%7Chypothetical.for.120208-121407.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.120208-121407.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.120208-121407.Ar_EST_120301b_c13008%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3587%7Cprotein.for.120897-123890.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.120897-123890.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.120897-123890.Ar_EST_120301b_c3587%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8766%7Cdenn.for.123949-125254.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.123949-125254.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.123949-125254.Ar_EST_120301b_rep_c8766%7Cdenn.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17570%7Cprotein.for.123430-124522.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.123430-124522.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.123430-124522.Ar_EST_120301b_rep_c17570%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18858%7Cdenn.for.123660-125168.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.123660-125168.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.123660-125168.Ar_EST_120301b_c18858%7Cdenn.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3052%7Ccullin.for.125843-127484.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.125843-127484.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.125843-127484.Ar_EST_120301b_c3052%7Ccullin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17614%7Ccopper.for.125607-126815.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.125607-126815.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.125607-126815.Ar_EST_120301b_c17614%7Ccopper.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c747%7Cprotein.for.124500-126576.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.124500-126576.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.124500-126576.Ar_EST_120301b_c747%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17078%7Cist_wi5_15381.for.130667-131913.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.130667-131913.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.130667-131913.Ar_EST_120301b_c17078%7Cist_wi5_15381.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17485%7Ccnb66-.for.138702-140015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.138702-140015.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.138702-140015.Ar_EST_120301b_c17485%7Ccnb66-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2216%7Cnormalized.for.138992-140015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.138992-140015.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.138992-140015.Ar_EST_120301b_c2216%7Cnormalized.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2246%7Ccbpn%3A.for.139223-140015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.139223-140015.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.139223-140015.Ar_EST_120301b_c2246%7Ccbpn%3A.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:54 now processing 0 total clusters:54 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:54 now processing 0 total clusters:54 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:52 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:59 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:52 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:72 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:57 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:71 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:35 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:53 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:47 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:41 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083046%7Cgb%7CEFC36754%2E1%7C.for.1-836.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.1-836.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.1-836.gi%7C284083046%7Cgb%7CEFC36754%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091607%7Cgb%7CEFC45253%2E1%7C.for.7653-8617.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.7653-8617.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.7653-8617.gi%7C284091607%7Cgb%7CEFC45253%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092028%7Cgb%7CEFC45672%2E1%7C.for.30151-33419.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.30151-33419.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.30151-33419.gi%7C284092028%7Cgb%7CEFC45672%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090471%7Cgb%7CEFC44123%2E1%7C.for.32804-34254.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.32804-34254.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.32804-34254.gi%7C284090471%7Cgb%7CEFC44123%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096685%7Cgb%7CEFC50312%2E1%7C.for.33998-37035.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.33998-37035.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.33998-37035.gi%7C284096685%7Cgb%7CEFC50312%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088045%7Cgb%7CEFC41711%2E1%7C.for.33818-37032.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.33818-37032.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.33818-37032.gi%7C284088045%7Cgb%7CEFC41711%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090230%7Cgb%7CEFC43883%2E1%7C.for.41294-42622.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41294-42622.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41294-42622.gi%7C284090230%7Cgb%7CEFC43883%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094055%7Cgb%7CEFC47690%2E1%7C.for.40922-43327.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40922-43327.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40922-43327.gi%7C284094055%7Cgb%7CEFC47690%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082128%7Cgb%7CEFC35900%2E1%7C.for.41339-42475.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41339-42475.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41339-42475.gi%7C284082128%7Cgb%7CEFC35900%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096572%7Cgb%7CEFC50200%2E1%7C.for.41336-42448.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41336-42448.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41336-42448.gi%7C284096572%7Cgb%7CEFC50200%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092196%7Cgb%7CEFC45839%2E1%7C.for.40940-42625.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40940-42625.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40940-42625.gi%7C284092196%7Cgb%7CEFC45839%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089069%7Cgb%7CEFC42729%2E1%7C.for.40934-42631.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40934-42631.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40934-42631.gi%7C284089069%7Cgb%7CEFC42729%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088445%7Cgb%7CEFC42108%2E1%7C.for.41318-42628.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41318-42628.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41318-42628.gi%7C284088445%7Cgb%7CEFC42108%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089047%7Cgb%7CEFC42707%2E1%7C.for.40934-42631.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40934-42631.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40934-42631.gi%7C284089047%7Cgb%7CEFC42707%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092545%7Cgb%7CEFC46187%2E1%7C.for.41303-42622.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41303-42622.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41303-42622.gi%7C284092545%7Cgb%7CEFC46187%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092133%7Cgb%7CEFC45776%2E1%7C.for.41336-42763.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41336-42763.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41336-42763.gi%7C284092133%7Cgb%7CEFC45776%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091257%7Cgb%7CEFC44905%2E1%7C.for.41279-42607.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41279-42607.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41279-42607.gi%7C284091257%7Cgb%7CEFC44905%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083391%7Cgb%7CEFC37095%2E1%7C.for.46019-47220.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.46019-47220.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.46019-47220.gi%7C284083391%7Cgb%7CEFC37095%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096907%7Cgb%7CEFC50534%2E1%7C.for.47156-48682.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.47156-48682.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.47156-48682.gi%7C284096907%7Cgb%7CEFC50534%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095965%7Cgb%7CEFC49594%2E1%7C.for.48536-51738.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.48536-51738.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.48536-51738.gi%7C284095965%7Cgb%7CEFC49594%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093119%7Cgb%7CEFC46758%2E1%7C.for.51320-53360.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.51320-53360.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.51320-53360.gi%7C284093119%7Cgb%7CEFC46758%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093777%7Cgb%7CEFC47413%2E1%7C.for.54524-55623.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.54524-55623.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.54524-55623.gi%7C284093777%7Cgb%7CEFC47413%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096265%7Cgb%7CEFC49893%2E1%7C.for.54593-55617.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.54593-55617.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.54593-55617.gi%7C284096265%7Cgb%7CEFC49893%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097069%7Cgb%7CEFC50696%2E1%7C.for.54270-57096.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.54270-57096.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.54270-57096.gi%7C284097069%7Cgb%7CEFC50696%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.67970-69036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67970-69036.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67970-69036.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.for.67964-69033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67964-69033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67964-69033.gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.for.68012-69093.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68012-69093.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68012-69093.gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.for.68009-69099.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68009-69099.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68009-69099.gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085992%7Cgb%7CEFC39672%2E1%7C.for.67967-69084.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67967-69084.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67967-69084.gi%7C284085992%7Cgb%7CEFC39672%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.for.67925-69084.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67925-69084.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67925-69084.gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094669%7Cgb%7CEFC48302%2E1%7C.for.67982-69240.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67982-69240.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67982-69240.gi%7C284094669%7Cgb%7CEFC48302%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095843%7Cgb%7CEFC49472%2E1%7C.for.68009-69078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68009-69078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68009-69078.gi%7C284095843%7Cgb%7CEFC49472%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.for.67991-69033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67991-69033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67991-69033.gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.for.67919-69033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67919-69033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67919-69033.gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090138%7Cgb%7CEFC43791%2E1%7C.for.67922-69105.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67922-69105.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67922-69105.gi%7C284090138%7Cgb%7CEFC43791%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.for.68009-69081.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68009-69081.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68009-69081.gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.for.68006-69042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68006-69042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68006-69042.gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.for.67970-69075.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67970-69075.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67970-69075.gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091293%7Cgb%7CEFC44940%2E1%7C.for.67988-69033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67988-69033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67988-69033.gi%7C284091293%7Cgb%7CEFC44940%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097003%7Cgb%7CEFC50630%2E1%7C.for.67994-69042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67994-69042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67994-69042.gi%7C284097003%7Cgb%7CEFC50630%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.for.68012-69039.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68012-69039.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68012-69039.gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083922%7Cgb%7CEFC37620%2E1%7C.for.67943-69015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67943-69015.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67943-69015.gi%7C284083922%7Cgb%7CEFC37620%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086956%7Cgb%7CEFC40629%2E1%7C.for.67598-69087.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67598-69087.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67598-69087.gi%7C284086956%7Cgb%7CEFC40629%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.for.67874-69132.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67874-69132.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67874-69132.gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090146%7Cgb%7CEFC43799%2E1%7C.for.67946-69078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67946-69078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67946-69078.gi%7C284090146%7Cgb%7CEFC43799%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.for.67928-69057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67928-69057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67928-69057.gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.for.67961-69042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67961-69042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67961-69042.gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.for.67856-69054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67856-69054.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67856-69054.gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082394%7Cgb%7CEFC36117%2E1%7C.for.67865-69255.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67865-69255.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67865-69255.gi%7C284082394%7Cgb%7CEFC36117%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090154%7Cgb%7CEFC43807%2E1%7C.for.67946-69105.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67946-69105.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67946-69105.gi%7C284090154%7Cgb%7CEFC43807%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086531%7Cgb%7CEFC40207%2E1%7C.for.67991-69165.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67991-69165.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67991-69165.gi%7C284086531%7Cgb%7CEFC40207%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081757%7Cgb%7CEFC35637%2E1%7C.for.68006-69000.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68006-69000.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68006-69000.gi%7C284081757%7Cgb%7CEFC35637%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.for.68012-68991.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68012-68991.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68012-68991.gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085724%7Cgb%7CEFC39406%2E1%7C.for.67847-69081.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67847-69081.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67847-69081.gi%7C284085724%7Cgb%7CEFC39406%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090243%7Cgb%7CEFC43896%2E1%7C.for.67895-69036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67895-69036.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67895-69036.gi%7C284090243%7Cgb%7CEFC43896%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090143%7Cgb%7CEFC43796%2E1%7C.for.67946-69078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67946-69078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67946-69078.gi%7C284090143%7Cgb%7CEFC43796%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.for.67889-69003.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67889-69003.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67889-69003.gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.for.67961-69060.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67961-69060.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67961-69060.gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083967%7Cgb%7CEFC37665%2E1%7C.for.67934-69036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67934-69036.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67934-69036.gi%7C284083967%7Cgb%7CEFC37665%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.for.68009-69033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68009-69033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68009-69033.gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087676%7Cgb%7CEFC41344%2E1%7C.for.67853-69180.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67853-69180.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67853-69180.gi%7C284087676%7Cgb%7CEFC41344%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.for.68033-69018.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68033-69018.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68033-69018.gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097074%7Cgb%7CEFC50701%2E1%7C.for.70651-71597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.70651-71597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.70651-71597.gi%7C284097074%7Cgb%7CEFC50701%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089534%7Cgb%7CEFC43191%2E1%7C.for.71334-73035.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.71334-73035.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.71334-73035.gi%7C284089534%7Cgb%7CEFC43191%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081900%7Cgb%7CEFC35731%2E1%7C.for.74620-75881.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.74620-75881.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.74620-75881.gi%7C284081900%7Cgb%7CEFC35731%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090744%7Cgb%7CEFC44394%2E1%7C.for.78118-79271.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.78118-79271.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.78118-79271.gi%7C284090744%7Cgb%7CEFC44394%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081997%7Cgb%7CEFC35800%2E1%7C.for.100561-101797.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.100561-101797.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.100561-101797.gi%7C284081997%7Cgb%7CEFC35800%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093069%7Cgb%7CEFC46708%2E1%7C.for.99379-101743.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99379-101743.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99379-101743.gi%7C284093069%7Cgb%7CEFC46708%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092634%7Cgb%7CEFC46275%2E1%7C.for.101489-103371.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.101489-103371.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.101489-103371.gi%7C284092634%7Cgb%7CEFC46275%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C313471368%7Csp%7CD2VAA9%2E1%7CMTNA_NAEGR.for.101489-103371.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.101489-103371.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.101489-103371.gi%7C313471368%7Csp%7CD2VAA9%2E1%7CMTNA_NAEGR.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084488%7Cgb%7CEFC38180%2E1%7C.for.121181-125102.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.121181-125102.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.121181-125102.gi%7C284084488%7Cgb%7CEFC38180%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093795%7Cgb%7CEFC47431%2E1%7C.for.124481-127583.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.124481-127583.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.124481-127583.gi%7C284093795%7Cgb%7CEFC47431%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093047%7Cgb%7CEFC46686%2E1%7C.for.124481-127362.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.124481-127362.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.124481-127362.gi%7C284093047%7Cgb%7CEFC46686%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:16 now processing 0 total clusters:16 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:16 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:16 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:16 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:13 now processing 0 total clusters:13 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:13 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:13 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:13 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:25 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:32 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.659-1586.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.659-1586.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.659-1586.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.7424-8549.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.7424-8549.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.7424-8549.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.27714-29394.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.27714-29394.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.27714-29394.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.33003-36835.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.33003-36835.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.33003-36835.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.38689-39942.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.38689-39942.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.38689-39942.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.40196-40985.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.40196-40985.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.40196-40985.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.41120-43127.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.41120-43127.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.41120-43127.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.46620-48482.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.46620-48482.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.46620-48482.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.48735-53160.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.48735-53160.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.48735-53160.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.54469-57843.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.54469-57843.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.54469-57843.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.82728-84694.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.82728-84694.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.82728-84694.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.88291-89969.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.88291-89969.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.88291-89969.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.90776-91798.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.90776-91798.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.90776-91798.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.103175-104273.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.103175-104273.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.103175-104273.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.106000-107152.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.106000-107152.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.106000-107152.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.115098-118041.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.115098-118041.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.115098-118041.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.118266-125063.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.118266-125063.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.118266-125063.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.5656-7004.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.5656-7004.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.5656-7004.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.8165-15319.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.8165-15319.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.8165-15319.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.15492-17482.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.15492-17482.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.15492-17482.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.20059-20981.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.20059-20981.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.20059-20981.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.27054-28008.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.27054-28008.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.27054-28008.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.30350-33219.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.30350-33219.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.30350-33219.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.42770-44566.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.42770-44566.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.42770-44566.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.57803-68899.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.57803-68899.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.57803-68899.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.69283-71456.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.69283-71456.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.69283-71456.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.71533-72835.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.71533-72835.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.71533-72835.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.74767-79071.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.74767-79071.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.74767-79071.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.84881-88071.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.84881-88071.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.84881-88071.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.92125-93011.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.92125-93011.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.92125-93011.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.97442-103171.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.97442-103171.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.97442-103171.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.124680-127383.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.124680-127383.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.124680-127383.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.130866-131713.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.130866-131713.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.130866-131713.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.138901-139874.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.138901-139874.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.138901-139874.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C29 Length: 126079 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C29.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C29.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:10 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:11 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:14 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:8 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:8 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8179%7Cnormalized.for.1097-2149.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.1097-2149.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.1097-2149.Ar_EST_120301b_rep_c8179%7Cnormalized.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7835%7Cfamily.for.3368-4459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.3368-4459.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.3368-4459.Ar_EST_120301b_c7835%7Cfamily.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c578%7Clow.for.4287-5641.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.4287-5641.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.4287-5641.Ar_EST_120301b_c578%7Clow.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17375%7C021030oocx024022ht.for.5051-6566.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.5051-6566.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.5051-6566.Ar_EST_120301b_c17375%7C021030oocx024022ht.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3629%7Cc2.for.7817-9651.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.7817-9651.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.7817-9651.Ar_EST_120301b_c3629%7Cc2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17542%7Calpha.for.8880-10271.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.8880-10271.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.8880-10271.Ar_EST_120301b_c17542%7Calpha.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4486%7Calpha-galactosidase.for.10166-11409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.10166-11409.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.10166-11409.Ar_EST_120301b_rep_c4486%7Calpha-galactosidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3978%7Calpha-galactosidase.for.10095-11343.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.10095-11343.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.10095-11343.Ar_EST_120301b_c3978%7Calpha-galactosidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig607%7Calpha-galactosidase.for.10102-12189.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.10102-12189.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.10102-12189.120301b_Contig607%7Calpha-galactosidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13874%7CDEHA2F26840p.for.10109-11040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.10109-11040.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.10109-11040.Ar_EST_120301b_rep_c13874%7CDEHA2F26840p.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4318%7Cactin-related.for.15717-17094.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.15717-17094.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.15717-17094.Ar_EST_120301b_rep_c4318%7Cactin-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2448%7Cprotein.for.18162-20068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.18162-20068.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.18162-20068.Ar_EST_120301b_c2448%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1643%7Cgr__ea.for.19898-21165.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.19898-21165.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.19898-21165.Ar_EST_120301b_c1643%7Cgr__ea.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4667%7Cpeptide.for.20507-21836.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.20507-21836.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.20507-21836.Ar_EST_120301b_rep_c4667%7Cpeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13946%7Cfm062691.for.23870-25166.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.23870-25166.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.23870-25166.Ar_EST_120301b_c13946%7Cfm062691.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c822%7Cadenylate.for.25563-26995.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.25563-26995.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.25563-26995.Ar_EST_120301b_c822%7Cadenylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15716%7Chypothetical.for.30116-31920.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.30116-31920.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.30116-31920.Ar_EST_120301b_c15716%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8109%7Cpredicted.for.33231-34533.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.33231-34533.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.33231-34533.Ar_EST_120301b_c8109%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3842%7Cmagnesium.for.34224-36102.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.34224-36102.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.34224-36102.Ar_EST_120301b_c3842%7Cmagnesium.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11375%7Cepsin.for.37842-39172.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.37842-39172.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.37842-39172.Ar_EST_120301b_c11375%7Cepsin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17650%7Ccre-myo-3.for.38846-40560.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.38846-40560.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.38846-40560.Ar_EST_120301b_c17650%7Ccre-myo-3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17315%7Cheat.for.39637-40968.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.39637-40968.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.39637-40968.Ar_EST_120301b_c17315%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18116%7C-like.for.42889-44275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.42889-44275.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.42889-44275.Ar_EST_120301b_c18116%7C-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig816%7Cwd.for.43860-45874.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.43860-45874.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.43860-45874.120301b_Contig816%7Cwd.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9517%7Ccfnw.for.45449-46761.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.45449-46761.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.45449-46761.Ar_EST_120301b_c9517%7Ccfnw.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13557%7Crhomboid.for.48933-50436.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.48933-50436.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.48933-50436.Ar_EST_120301b_c13557%7Crhomboid.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2074%7C39s.for.52467-53984.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.52467-53984.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.52467-53984.Ar_EST_120301b_c2074%7C39s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12950%7Cnad.for.52392-53486.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.52392-53486.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.52392-53486.Ar_EST_120301b_c12950%7Cnad.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2064%7Cdna.for.53309-55811.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.53309-55811.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.53309-55811.Ar_EST_120301b_c2064%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20272%7Cdna.for.55582-57416.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.55582-57416.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.55582-57416.Ar_EST_120301b_c20272%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8469%7Ccatalytic.for.55014-56440.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.55014-56440.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.55014-56440.Ar_EST_120301b_c8469%7Ccatalytic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14008%7Creplication.for.58157-59604.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.58157-59604.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.58157-59604.Ar_EST_120301b_c14008%7Creplication.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17948%7C2-oxoacid.for.68615-69892.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.68615-69892.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.68615-69892.Ar_EST_120301b_c17948%7C2-oxoacid.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17240%7Cfy373865.for.71171-72567.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.71171-72567.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.71171-72567.Ar_EST_120301b_c17240%7Cfy373865.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig278%7Cprotein.for.70529-73090.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.70529-73090.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.70529-73090.120301b_Contig278%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12757%7Cnormalized.for.73057-74393.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.73057-74393.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.73057-74393.Ar_EST_120301b_c12757%7Cnormalized.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19042%7Cmannan-binding.for.82056-83763.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.82056-83763.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.82056-83763.Ar_EST_120301b_c19042%7Cmannan-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7939%7Cmannan-binding.for.82082-83494.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.82082-83494.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.82082-83494.Ar_EST_120301b_c7939%7Cmannan-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19195%7Cpredicted.for.84202-85409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.84202-85409.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.84202-85409.Ar_EST_120301b_c19195%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9407%7Cpredicted.for.84534-85789.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.84534-85789.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.84534-85789.Ar_EST_120301b_c9407%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c975%7Cphospholipase.for.85526-86849.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.85526-86849.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.85526-86849.Ar_EST_120301b_c975%7Cphospholipase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18766%7Cprotein.for.86248-87871.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.86248-87871.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.86248-87871.Ar_EST_120301b_c18766%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8008%7Cest_omyk_evo_818589.for.86726-88045.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.86726-88045.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.86726-88045.Ar_EST_120301b_c8008%7Cest_omyk_evo_818589.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16106%7Cmm1-0024t-m079-a10-.for.87327-88533.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.87327-88533.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.87327-88533.Ar_EST_120301b_c16106%7Cmm1-0024t-m079-a10-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig780%7Cfy580029.for.88294-89812.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.88294-89812.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.88294-89812.120301b_Contig780%7Cfy580029.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3543%7Cdcn1-like.for.89436-91029.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.89436-91029.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.89436-91029.Ar_EST_120301b_c3543%7Cdcn1-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2727%7Cskp1-like.for.90317-92010.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.90317-92010.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.90317-92010.Ar_EST_120301b_c2727%7Cskp1-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13307%7Chypothetical.for.91504-92833.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.91504-92833.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.91504-92833.Ar_EST_120301b_c13307%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8761%7Cplant.for.92721-94535.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.92721-94535.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.92721-94535.Ar_EST_120301b_c8761%7Cplant.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18653%7Cvacuolar.for.94821-96247.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.94821-96247.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.94821-96247.Ar_EST_120301b_c18653%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7779%7Cribosomal.for.95438-97086.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.95438-97086.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.95438-97086.Ar_EST_120301b_c7779%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19859%7Cvam6.for.96081-98261.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.96081-98261.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.96081-98261.Ar_EST_120301b_c19859%7Cvam6.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19889%7Cam524334.for.94360-95913.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.94360-95913.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.94360-95913.Ar_EST_120301b_c19889%7Cam524334.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2947%7Coxoglutarate.for.102452-104208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.102452-104208.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.102452-104208.Ar_EST_120301b_c2947%7Coxoglutarate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3312%7Coxoglutarate.for.100584-102407.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.100584-102407.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.100584-102407.Ar_EST_120301b_c3312%7Coxoglutarate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8241%7Coxoglutarate.for.101538-103504.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.101538-103504.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.101538-103504.Ar_EST_120301b_c8241%7Coxoglutarate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c827%7Cxanthine.for.103424-104780.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.103424-104780.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.103424-104780.Ar_EST_120301b_c827%7Cxanthine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3666%7Cxanthine.for.103935-106710.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.103935-106710.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.103935-106710.Ar_EST_120301b_c3666%7Cxanthine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c76%7Cxanthine.for.106048-107728.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.106048-107728.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.106048-107728.Ar_EST_120301b_c76%7Cxanthine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13578%7Cxanthine.for.107198-108391.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.107198-108391.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.107198-108391.Ar_EST_120301b_c13578%7Cxanthine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15340%7C---NA---.for.108866-110095.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.108866-110095.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.108866-110095.Ar_EST_120301b_c15340%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14806%7Cubiquitin.for.112126-113439.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.112126-113439.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.112126-113439.Ar_EST_120301b_c14806%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10754%7Cfs549801.for.114432-115482.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.114432-115482.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.114432-115482.Ar_EST_120301b_c10754%7Cfs549801.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2885%7Catp-dependent.for.114881-116819.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.114881-116819.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.114881-116819.Ar_EST_120301b_c2885%7Catp-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16854%7Ccns.for.115963-117321.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.115963-117321.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.115963-117321.Ar_EST_120301b_c16854%7Ccns.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1234%7Cextracellular.for.116926-119073.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.116926-119073.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.116926-119073.Ar_EST_120301b_c1234%7Cextracellular.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18156%7Cest_bsai_evw_1261795.for.118556-119843.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.118556-119843.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.118556-119843.Ar_EST_120301b_c18156%7Cest_bsai_evw_1261795.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16679%7C---NA---.for.119682-120970.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.119682-120970.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.119682-120970.Ar_EST_120301b_c16679%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15340%7C---NA---.for.121298-122521.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.121298-122521.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.121298-122521.Ar_EST_120301b_c15340%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7264%7Celongation.for.122454-123795.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122454-123795.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122454-123795.Ar_EST_120301b_rep_c7264%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7231%7Ctranslation.for.122649-123799.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122649-123799.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122649-123799.Ar_EST_120301b_rep_c7231%7Ctranslation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19680%7Celongation.for.122972-124120.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122972-124120.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122972-124120.Ar_EST_120301b_rep_c19680%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5056%7Celongation.for.123236-124322.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123236-124322.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123236-124322.Ar_EST_120301b_rep_c5056%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20204%7Celongation.for.123352-124343.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123352-124343.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123352-124343.Ar_EST_120301b_rep_c20204%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4033%7Celongation.for.122354-124484.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122354-124484.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122354-124484.Ar_EST_120301b_rep_c4033%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig612%7Celongation.for.123121-124432.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123121-124432.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123121-124432.120301b_Contig612%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7205%7Ctranslation.for.122978-124036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122978-124036.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122978-124036.Ar_EST_120301b_rep_c7205%7Ctranslation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15762%7Celongation.for.123409-124481.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123409-124481.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123409-124481.Ar_EST_120301b_rep_c15762%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig613%7Celongation.for.122770-124010.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122770-124010.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122770-124010.120301b_Contig613%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18610%7Celongation.for.123405-124479.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123405-124479.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123405-124479.Ar_EST_120301b_rep_c18610%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5963%7Celongation.for.122376-123486.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122376-123486.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122376-123486.Ar_EST_120301b_rep_c5963%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20041%7Celongation.for.122393-123437.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122393-123437.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122393-123437.Ar_EST_120301b_rep_c20041%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5394%7Celongation.for.122479-123583.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122479-123583.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122479-123583.Ar_EST_120301b_rep_c5394%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8943%7Celongation.for.123127-124102.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123127-124102.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123127-124102.Ar_EST_120301b_c8943%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7169%7Celongation.for.123192-124250.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123192-124250.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123192-124250.Ar_EST_120301b_rep_c7169%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5382%7Celongation.for.123276-124266.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123276-124266.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123276-124266.Ar_EST_120301b_rep_c5382%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4827%7Celongation.for.122343-123988.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122343-123988.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122343-123988.Ar_EST_120301b_rep_c4827%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16096%7Celongation.for.122363-123545.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122363-123545.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122363-123545.Ar_EST_120301b_rep_c16096%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7219%7Ctranslation.for.122603-123858.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122603-123858.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122603-123858.Ar_EST_120301b_rep_c7219%7Ctranslation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7236%7Celongation.for.122883-124068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122883-124068.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122883-124068.Ar_EST_120301b_rep_c7236%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19915%7Celongation.for.123442-124484.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123442-124484.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123442-124484.Ar_EST_120301b_rep_c19915%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5477%7Celongation.for.122462-123491.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122462-123491.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122462-123491.Ar_EST_120301b_rep_c5477%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19970%7Celongation.for.123399-124493.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123399-124493.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123399-124493.Ar_EST_120301b_rep_c19970%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7042%7Ctranslation.for.122885-124003.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122885-124003.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122885-124003.Ar_EST_120301b_rep_c7042%7Ctranslation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6990%7Celongation.for.122895-124193.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122895-124193.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122895-124193.Ar_EST_120301b_rep_c6990%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7719%7Celongation.for.123277-124464.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123277-124464.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123277-124464.Ar_EST_120301b_rep_c7719%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5354%7Celongation.for.123442-124478.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123442-124478.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123442-124478.Ar_EST_120301b_rep_c5354%7Celongation.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:51 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:51 now processing 0 total clusters:51 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:51 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 ...processing 0 of 10 ...processing 1 of 10 ...processing 2 of 10 ...processing 3 of 10 ...processing 4 of 10 ...processing 5 of 10 ...processing 6 of 10 ...processing 7 of 10 ...processing 8 of 10 ...processing 9 of 10 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:37 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:30 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:35 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:43 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:33 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:29 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:31 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:35 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:24 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094796%7Cgb%7CEFC48429%2E1%7C.for.15642-17017.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.15642-17017.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.15642-17017.gi%7C284094796%7Cgb%7CEFC48429%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082488%7Cgb%7CEFC36205%2E1%7C.for.16488-18115.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.16488-18115.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.16488-18115.gi%7C284082488%7Cgb%7CEFC36205%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087289%7Cgb%7CEFC40960%2E1%7C.for.17992-20585.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.17992-20585.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.17992-20585.gi%7C284087289%7Cgb%7CEFC40960%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095823%7Cgb%7CEFC49452%2E1%7C.for.20546-21798.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.20546-21798.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.20546-21798.gi%7C284095823%7Cgb%7CEFC49452%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083472%7Cgb%7CEFC37175%2E1%7C.for.23710-24791.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.23710-24791.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.23710-24791.gi%7C284083472%7Cgb%7CEFC37175%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093407%7Cgb%7CEFC47045%2E1%7C.for.33790-35729.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.33790-35729.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.33790-35729.gi%7C284093407%7Cgb%7CEFC47045%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088682%7Cgb%7CEFC42344%2E1%7C.for.43774-45818.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.43774-45818.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.43774-45818.gi%7C284088682%7Cgb%7CEFC42344%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090843%7Cgb%7CEFC44493%2E1%7C.for.51653-52746.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.51653-52746.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.51653-52746.gi%7C284090843%7Cgb%7CEFC44493%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085714%7Cgb%7CEFC39396%2E1%7C.for.52255-54015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.52255-54015.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.52255-54015.gi%7C284085714%7Cgb%7CEFC39396%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089155%7Cgb%7CEFC42814%2E1%7C.for.53275-57104.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.53275-57104.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.53275-57104.gi%7C284089155%7Cgb%7CEFC42814%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086989%7Cgb%7CEFC40662%2E1%7C.for.58507-59883.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.58507-59883.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.58507-59883.gi%7C284086989%7Cgb%7CEFC40662%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096971%7Cgb%7CEFC50598%2E1%7C.for.57951-59898.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.57951-59898.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.57951-59898.gi%7C284096971%7Cgb%7CEFC50598%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092099%7Cgb%7CEFC45742%2E1%7C.for.60927-63829.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.60927-63829.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.60927-63829.gi%7C284092099%7Cgb%7CEFC45742%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088599%7Cgb%7CEFC42262%2E1%7C.for.67523-68880.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.67523-68880.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.67523-68880.gi%7C284088599%7Cgb%7CEFC42262%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087974%7Cgb%7CEFC41640%2E1%7C.for.89522-91023.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.89522-91023.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.89522-91023.gi%7C284087974%7Cgb%7CEFC41640%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094695%7Cgb%7CEFC48328%2E1%7C.for.101040-104240.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.101040-104240.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.101040-104240.gi%7C284094695%7Cgb%7CEFC48328%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087414%7Cgb%7CEFC41084%2E1%7C.for.100661-104243.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.100661-104243.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.100661-104243.gi%7C284087414%7Cgb%7CEFC41084%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080893%7Cgb%7CEFC35223%2E1%7C.for.103783-105176.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.103783-105176.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.103783-105176.gi%7C284080893%7Cgb%7CEFC35223%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095600%7Cgb%7CEFC49230%2E1%7C.for.103573-108452.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.103573-108452.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.103573-108452.gi%7C284095600%7Cgb%7CEFC49230%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089171%7Cgb%7CEFC42830%2E1%7C.for.107194-108455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.107194-108455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.107194-108455.gi%7C284089171%7Cgb%7CEFC42830%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081083%7Cgb%7CEFC35289%2E1%7C.for.104227-105854.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.104227-105854.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.104227-105854.gi%7C284081083%7Cgb%7CEFC35289%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082443%7Cgb%7CEFC36161%2E1%7C.for.117710-118968.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.117710-118968.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.117710-118968.gi%7C284082443%7Cgb%7CEFC36161%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090531%7Cgb%7CEFC44182%2E1%7C.for.122379-124477.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122379-124477.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122379-124477.gi%7C284090531%7Cgb%7CEFC44182%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096603%7Cgb%7CEFC50231%2E1%7C.for.122379-124477.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122379-124477.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122379-124477.gi%7C284096603%7Cgb%7CEFC50231%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084223%7Cgb%7CEFC37918%2E1%7C.for.122379-124477.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122379-124477.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122379-124477.gi%7C284084223%7Cgb%7CEFC37918%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C84105357%7Cgb%7CABC54650%2E1%7C.for.122424-124411.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122424-124411.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122424-124411.gi%7C84105357%7Cgb%7CABC54650%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:15 now processing 0 total clusters:15 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:28 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:28 now processing 0 total clusters:28 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:28 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 2 ...processing 1 of 2 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 10 ...processing 1 of 10 ...processing 2 of 10 ...processing 3 of 10 ...processing 4 of 10 ...processing 5 of 10 ...processing 6 of 10 ...processing 7 of 10 ...processing 8 of 10 ...processing 9 of 10 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.1215-2144.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.1215-2144.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.1215-2144.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.4486-6372.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.4486-6372.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.4486-6372.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.7893-9451.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.7893-9451.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.7893-9451.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.10244-11989.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.10244-11989.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.10244-11989.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.20696-21639.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.20696-21639.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.20696-21639.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.24069-24966.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.24069-24966.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.24069-24966.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.33430-34333.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.33430-34333.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.33430-34333.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.38041-40366.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.38041-40366.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.38041-40366.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.43973-46561.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.43973-46561.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.43973-46561.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.52454-53815.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.52454-53815.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.52454-53815.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.70728-74193.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.70728-74193.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.70728-74193.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.82281-83294.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.82281-83294.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.82281-83294.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.84401-85589.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.84401-85589.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.84401-85589.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.85725-88333.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.85725-88333.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.85725-88333.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.88493-89612.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.88493-89612.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.88493-89612.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.89634-90829.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.89634-90829.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.89634-90829.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.94500-98061.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.94500-98061.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.94500-98061.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.100857-104580.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.100857-104580.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.100857-104580.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.109065-109895.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.109065-109895.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.109065-109895.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.112325-113239.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.112325-113239.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.112325-113239.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.121491-122321.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.121491-122321.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.121491-122321.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.9079-10071.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.9079-10071.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.9079-10071.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.15841-17915.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.15841-17915.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.15841-17915.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.18361-19868.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.18361-19868.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.18361-19868.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.20097-20965.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.20097-20965.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.20097-20965.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.25760-26795.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.25760-26795.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.25760-26795.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.33989-35902.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.33989-35902.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.33989-35902.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.43088-44075.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.43088-44075.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.43088-44075.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.49132-50236.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.49132-50236.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.49132-50236.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.51852-52546.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.51852-52546.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.51852-52546.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.53474-57216.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.53474-57216.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.53474-57216.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.58150-59698.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.58150-59698.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.58150-59698.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.61126-63629.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.61126-63629.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.61126-63629.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.90516-92633.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.90516-92633.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.90516-92633.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.92920-94335.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.92920-94335.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.92920-94335.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.103772-108252.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.103772-108252.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.103772-108252.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.116162-117121.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.116162-117121.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.116162-117121.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.117125-119712.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.117125-119712.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.117125-119712.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.119872-120770.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.119872-120770.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.119872-120770.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.122543-124287.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.122543-124287.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.122543-124287.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C30 Length: 54314 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:2 current j:0 j_size:2 current j:1 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C30.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C30.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig893%7Catp-binding.for.466-2557.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.466-2557.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.466-2557.120301b_Contig893%7Catp-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10773%7Cabc.for.1870-3393.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1870-3393.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1870-3393.Ar_EST_120301b_c10773%7Cabc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4126%7Chypothetical.for.2863-4751.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.2863-4751.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.2863-4751.Ar_EST_120301b_rep_c4126%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6273%7Cprotein.for.3309-4727.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.3309-4727.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.3309-4727.Ar_EST_120301b_rep_c6273%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15582%7C---NA---.for.3691-4637.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.3691-4637.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.3691-4637.Ar_EST_120301b_rep_c15582%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12926%7Ccchx.for.7094-8380.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.7094-8380.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.7094-8380.Ar_EST_120301b_c12926%7Ccchx.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17763%7Cdna.for.8313-9673.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.8313-9673.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.8313-9673.Ar_EST_120301b_c17763%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4571%7Cspry.for.12651-15061.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.12651-15061.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.12651-15061.Ar_EST_120301b_rep_c4571%7Cspry.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4942%7Cspry.for.12752-14477.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.12752-14477.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.12752-14477.Ar_EST_120301b_rep_c4942%7Cspry.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19099%7Cnabrp89tf.for.15014-16243.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.15014-16243.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.15014-16243.Ar_EST_120301b_rep_c19099%7Cnabrp89tf.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6660%7Cbasal.for.30092-32127.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.30092-32127.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.30092-32127.Ar_EST_120301b_rep_c6660%7Cbasal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18311%7Cnuclear.for.32038-33497.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.32038-33497.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.32038-33497.Ar_EST_120301b_c18311%7Cnuclear.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16390%7Catp-dependent.for.32819-34056.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.32819-34056.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.32819-34056.Ar_EST_120301b_c16390%7Catp-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11194%7Cpredicted.for.38415-39629.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.38415-39629.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.38415-39629.Ar_EST_120301b_c11194%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig234%7Chypothetical.for.39994-41974.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.39994-41974.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.39994-41974.120301b_Contig234%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10235%7Cprotein.for.39033-40812.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.39033-40812.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.39033-40812.Ar_EST_120301b_c10235%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2809%7Cprotein.for.42500-43683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.42500-43683.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.42500-43683.Ar_EST_120301b_c2809%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8390%7Clarv027tr.for.41927-43429.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.41927-43429.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.41927-43429.Ar_EST_120301b_c8390%7Clarv027tr.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3793%7Ctpr.for.43881-45649.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.43881-45649.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.43881-45649.Ar_EST_120301b_c3793%7Ctpr.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10560%7C015b07_011507c.for.45034-46189.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.45034-46189.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.45034-46189.Ar_EST_120301b_c10560%7C015b07_011507c.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6594%7Ceukaryotic.for.46490-48119.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.46490-48119.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.46490-48119.Ar_EST_120301b_rep_c6594%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12692%7Cdna-binding.for.47435-48595.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.47435-48595.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.47435-48595.Ar_EST_120301b_c12692%7Cdna-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3672%7Ccold.for.47988-49845.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.47988-49845.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.47988-49845.Ar_EST_120301b_c3672%7Ccold.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:17 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:19 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:17 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:16 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:14 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:19 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:13 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:14 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:14 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:17 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082638%7Cgb%7CEFC36352%2E1%7C.for.1529-3354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3354.gi%7C284082638%7Cgb%7CEFC36352%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089041%7Cgb%7CEFC42701%2E1%7C.for.742-3363.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.742-3363.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.742-3363.gi%7C284089041%7Cgb%7CEFC42701%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096503%7Cgb%7CEFC50131%2E1%7C.for.1526-3375.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1526-3375.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1526-3375.gi%7C284096503%7Cgb%7CEFC50131%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086918%7Cgb%7CEFC40591%2E1%7C.for.1529-3375.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3375.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3375.gi%7C284086918%7Cgb%7CEFC40591%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091223%7Cgb%7CEFC44871%2E1%7C.for.1529-3369.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3369.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3369.gi%7C284091223%7Cgb%7CEFC44871%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096824%7Cgb%7CEFC50451%2E1%7C.for.1784-3351.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1784-3351.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1784-3351.gi%7C284096824%7Cgb%7CEFC50451%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086695%7Cgb%7CEFC40370%2E1%7C.for.2225-3375.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.2225-3375.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.2225-3375.gi%7C284086695%7Cgb%7CEFC40370%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093963%7Cgb%7CEFC47599%2E1%7C.for.1535-3354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1535-3354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1535-3354.gi%7C284093963%7Cgb%7CEFC47599%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089381%7Cgb%7CEFC43039%2E1%7C.for.1529-3369.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3369.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3369.gi%7C284089381%7Cgb%7CEFC43039%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086532%7Cgb%7CEFC40208%2E1%7C.for.1598-3348.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1598-3348.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1598-3348.gi%7C284086532%7Cgb%7CEFC40208%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092043%7Cgb%7CEFC45687%2E1%7C.for.1529-3354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3354.gi%7C284092043%7Cgb%7CEFC45687%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085363%7Cgb%7CEFC39047%2E1%7C.for.1529-3354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3354.gi%7C284085363%7Cgb%7CEFC39047%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083990%7Cgb%7CEFC37687%2E1%7C.for.1520-3351.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1520-3351.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1520-3351.gi%7C284083990%7Cgb%7CEFC37687%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083848%7Cgb%7CEFC37547%2E1%7C.for.1535-3351.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1535-3351.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1535-3351.gi%7C284083848%7Cgb%7CEFC37547%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086873%7Cgb%7CEFC40547%2E1%7C.for.1625-3363.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1625-3363.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1625-3363.gi%7C284086873%7Cgb%7CEFC40547%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083434%7Cgb%7CEFC37137%2E1%7C.for.1535-3354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1535-3354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1535-3354.gi%7C284083434%7Cgb%7CEFC37137%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094052%7Cgb%7CEFC47687%2E1%7C.for.1547-3354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1547-3354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1547-3354.gi%7C284094052%7Cgb%7CEFC47687%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085442%7Cgb%7CEFC39126%2E1%7C.for.1529-3354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3354.gi%7C284085442%7Cgb%7CEFC39126%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092675%7Cgb%7CEFC46316%2E1%7C.for.1535-3369.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1535-3369.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1535-3369.gi%7C284092675%7Cgb%7CEFC46316%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083453%7Cgb%7CEFC37156%2E1%7C.for.1523-3363.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1523-3363.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1523-3363.gi%7C284083453%7Cgb%7CEFC37156%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085964%7Cgb%7CEFC39644%2E1%7C.for.1823-3354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1823-3354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1823-3354.gi%7C284085964%7Cgb%7CEFC39644%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096783%7Cgb%7CEFC50410%2E1%7C.for.11072-13224.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.11072-13224.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.11072-13224.gi%7C284096783%7Cgb%7CEFC50410%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084703%7Cgb%7CEFC38393%2E1%7C.for.24850-25808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.24850-25808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.24850-25808.gi%7C284084703%7Cgb%7CEFC38393%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088237%7Cgb%7CEFC41902%2E1%7C.for.37067-38139.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.37067-38139.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.37067-38139.gi%7C284088237%7Cgb%7CEFC41902%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088261%7Cgb%7CEFC41926%2E1%7C.for.36988-38142.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.36988-38142.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.36988-38142.gi%7C284088261%7Cgb%7CEFC41926%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085648%7Cgb%7CEFC39330%2E1%7C.for.39406-40370.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.39406-40370.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.39406-40370.gi%7C284085648%7Cgb%7CEFC39330%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:2 now processing 0 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:2 now processing 0 in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:2 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:2 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:11 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.941-4551.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.941-4551.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.941-4551.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.7293-8180.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.7293-8180.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.7293-8180.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.8512-9473.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.8512-9473.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.8512-9473.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.11271-13024.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.11271-13024.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.11271-13024.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.30291-31960.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.30291-31960.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.30291-31960.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.32237-33865.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.32237-33865.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.32237-33865.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.39232-41792.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.39232-41792.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.39232-41792.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.42126-43343.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.42126-43343.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.42126-43343.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.3881-4437.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.3881-4437.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.3881-4437.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.12850-14861.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.12850-14861.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.12850-14861.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.15213-16051.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.15213-16051.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.15213-16051.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.44080-45989.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.44080-45989.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.44080-45989.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.46689-48014.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.46689-48014.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.46689-48014.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.48187-49645.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.48187-49645.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.48187-49645.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C33 Length: 138103 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C33.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C33.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:4 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10865%7Cn-terminal.for.2033-3700.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.2033-3700.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.2033-3700.Ar_EST_120301b_c10865%7Cn-terminal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8426%7Cinositol.for.9692-11354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.9692-11354.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.9692-11354.Ar_EST_120301b_c8426%7Cinositol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3091%7Cadipose-regulatory.for.13714-15674.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.13714-15674.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.13714-15674.Ar_EST_120301b_c3091%7Cadipose-regulatory.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14794%7Cfs962201.for.15139-16417.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.15139-16417.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.15139-16417.Ar_EST_120301b_c14794%7Cfs962201.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13215%7Cankyrin.for.15913-17182.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.15913-17182.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.15913-17182.Ar_EST_120301b_c13215%7Cankyrin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13475%7Ctransformer-sr.for.16806-18266.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.16806-18266.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.16806-18266.Ar_EST_120301b_rep_c13475%7Ctransformer-sr.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19625%7Cgtp-binding.for.18288-19294.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.18288-19294.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.18288-19294.Ar_EST_120301b_rep_c19625%7Cgtp-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c57%7Cdevelopmentally.for.17581-19507.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.17581-19507.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.17581-19507.Ar_EST_120301b_c57%7Cdevelopmentally.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9143%7Ccatf.for.20396-21844.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.20396-21844.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.20396-21844.Ar_EST_120301b_rep_c9143%7Ccatf.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18330%7Ccafy.for.21621-22865.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.21621-22865.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.21621-22865.Ar_EST_120301b_c18330%7Ccafy.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig221%7Cfp601087.for.22358-24862.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.22358-24862.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.22358-24862.120301b_Contig221%7Cfp601087.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c250%7Cv-myb.for.26371-29070.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.26371-29070.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.26371-29070.Ar_EST_120301b_c250%7Cv-myb.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2206%7C280438371.for.27937-29275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.27937-29275.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.27937-29275.Ar_EST_120301b_c2206%7C280438371.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17101%7Cche.for.28883-30363.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.28883-30363.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.28883-30363.Ar_EST_120301b_c17101%7Cche.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12076%7C---NA---.for.28960-30054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.28960-30054.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.28960-30054.Ar_EST_120301b_c12076%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5943%7Csyntaxin-binding.for.30851-32397.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.30851-32397.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.30851-32397.Ar_EST_120301b_rep_c5943%7Csyntaxin-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4805%7Csyntaxin.for.29991-32900.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.29991-32900.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.29991-32900.Ar_EST_120301b_rep_c4805%7Csyntaxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9158%7Csec1-like.for.31452-32914.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.31452-32914.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.31452-32914.Ar_EST_120301b_c9158%7Csec1-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16864%7Csyntaxin.for.31408-32511.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.31408-32511.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.31408-32511.Ar_EST_120301b_rep_c16864%7Csyntaxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16176%7Csyntaxin.for.30212-31558.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.30212-31558.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.30212-31558.Ar_EST_120301b_rep_c16176%7Csyntaxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9532%7Cconserved.for.32392-33871.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.32392-33871.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.32392-33871.Ar_EST_120301b_c9532%7Cconserved.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig434%7Ccell.for.35440-36926.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.35440-36926.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.35440-36926.120301b_Contig434%7Ccell.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17121%7Cgpi.for.37557-39027.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.37557-39027.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.37557-39027.Ar_EST_120301b_c17121%7Cgpi.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1164%7Cbst1_canga.for.38294-40130.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.38294-40130.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.38294-40130.120301b_Contig1164%7Cbst1_canga.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12556%7Col2821f.for.40012-41356.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.40012-41356.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.40012-41356.Ar_EST_120301b_c12556%7Col2821f.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13810%7Cexosome.for.40762-41850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.40762-41850.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.40762-41850.Ar_EST_120301b_c13810%7Cexosome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20565%7Cexosome.for.40975-42051.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.40975-42051.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.40975-42051.Ar_EST_120301b_rep_c20565%7Cexosome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1304%7Cexosome.for.42981-44309.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.42981-44309.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.42981-44309.Ar_EST_120301b_c1304%7Cexosome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20442%7Cexosome.for.43169-44389.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.43169-44389.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.43169-44389.Ar_EST_120301b_c20442%7Cexosome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9428%7Cunconventional.for.45256-46575.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.45256-46575.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.45256-46575.Ar_EST_120301b_c9428%7Cunconventional.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10763%7Cprotein.for.46158-47562.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.46158-47562.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.46158-47562.Ar_EST_120301b_c10763%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8600%7Cprotein.for.47002-48304.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.47002-48304.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.47002-48304.Ar_EST_120301b_c8600%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11770%7Cribonucleoside.for.49566-51011.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.49566-51011.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.49566-51011.Ar_EST_120301b_c11770%7Cribonucleoside.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19499%7Cribonucleoside.for.48600-50066.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.48600-50066.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.48600-50066.Ar_EST_120301b_c19499%7Cribonucleoside.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8020%7Cribonucleoside-triphosphate.for.48907-50444.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.48907-50444.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.48907-50444.Ar_EST_120301b_c8020%7Cribonucleoside-triphosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20281%7Ccation-transporting.for.52923-55212.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.52923-55212.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.52923-55212.Ar_EST_120301b_c20281%7Ccation-transporting.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17555%7Ccation-transporting.for.52392-53740.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.52392-53740.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.52392-53740.Ar_EST_120301b_c17555%7Ccation-transporting.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10588%7Cprobable.for.54509-55821.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.54509-55821.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.54509-55821.Ar_EST_120301b_c10588%7Cprobable.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3266%7Cglycosyltransferase.for.59493-61361.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.59493-61361.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.59493-61361.Ar_EST_120301b_c3266%7Cglycosyltransferase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14384%7Cprotein.for.61027-62292.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.61027-62292.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.61027-62292.Ar_EST_120301b_c14384%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14706%7Capoptosis.for.61337-62285.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.61337-62285.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.61337-62285.Ar_EST_120301b_c14706%7Capoptosis.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4234%7Chypothetical.for.63085-65145.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.63085-65145.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.63085-65145.Ar_EST_120301b_rep_c4234%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6835%7Cleishmanolysin-like.for.63703-64777.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.63703-64777.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.63703-64777.Ar_EST_120301b_rep_c6835%7Cleishmanolysin-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17669%7Chypothetical.for.63308-64533.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.63308-64533.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.63308-64533.Ar_EST_120301b_rep_c17669%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6093%7C---NA---.for.64020-65144.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.64020-65144.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.64020-65144.Ar_EST_120301b_rep_c6093%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11320%7Cpentatricopeptide.for.65970-67270.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.65970-67270.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.65970-67270.Ar_EST_120301b_c11320%7Cpentatricopeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c681%7Chypothetical.for.72906-74211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.72906-74211.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.72906-74211.Ar_EST_120301b_c681%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12804%7Ctype.for.75141-76563.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.75141-76563.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.75141-76563.Ar_EST_120301b_c12804%7Ctype.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6513%7Cmalate.for.80519-82412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.80519-82412.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.80519-82412.Ar_EST_120301b_rep_c6513%7Cmalate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6815%7Cmalate.for.80492-82211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.80492-82211.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.80492-82211.Ar_EST_120301b_rep_c6815%7Cmalate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3066%7Cmalate.for.79932-81736.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.79932-81736.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.79932-81736.Ar_EST_120301b_c3066%7Cmalate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16333%7Ctransport.for.82370-83712.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.82370-83712.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.82370-83712.Ar_EST_120301b_c16333%7Ctransport.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10746%7Cbeige.for.85163-86860.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.85163-86860.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.85163-86860.Ar_EST_120301b_c10746%7Cbeige.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14032%7Ccaxx.for.86480-87826.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.86480-87826.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.86480-87826.Ar_EST_120301b_c14032%7Ccaxx.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12871%7Cpredicted.for.88548-89839.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.88548-89839.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.88548-89839.Ar_EST_120301b_c12871%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15711%7Cbeach.for.89286-90628.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.89286-90628.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.89286-90628.Ar_EST_120301b_c15711%7Cbeach.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13277%7Cpredicted.for.90419-92191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.90419-92191.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.90419-92191.Ar_EST_120301b_c13277%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15589%7Cprotein.for.102548-103609.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.102548-103609.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.102548-103609.Ar_EST_120301b_c15589%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16197%7Cprotein.for.102885-104227.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.102885-104227.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.102885-104227.Ar_EST_120301b_c16197%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c22%7Caminotransferase.for.108878-111199.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.108878-111199.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.108878-111199.Ar_EST_120301b_c22%7Caminotransferase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15277%7Cprotein.for.110958-112022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.110958-112022.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.110958-112022.Ar_EST_120301b_c15277%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5938%7Carginine.for.112004-113875.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.112004-113875.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.112004-113875.Ar_EST_120301b_rep_c5938%7Carginine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12333%7Cfy828944.for.115780-117116.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115780-117116.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115780-117116.Ar_EST_120301b_c12333%7Cfy828944.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14482%7Cprotein.for.116951-118425.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.116951-118425.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.116951-118425.Ar_EST_120301b_c14482%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1997%7Cimpact.for.116977-118066.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.116977-118066.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.116977-118066.Ar_EST_120301b_c1997%7Cimpact.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20372%7C60s.for.118493-119653.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.118493-119653.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.118493-119653.Ar_EST_120301b_rep_c20372%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20437%7C60s.for.118509-119655.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.118509-119655.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.118509-119655.Ar_EST_120301b_rep_c20437%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18561%7C60s.for.118493-119665.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.118493-119665.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.118493-119665.Ar_EST_120301b_rep_c18561%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1306%7Cbay.for.119271-120567.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.119271-120567.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.119271-120567.Ar_EST_120301b_c1306%7Cbay.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11551%7Catp-binding.for.122951-124177.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.122951-124177.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.122951-124177.Ar_EST_120301b_c11551%7Catp-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2796%7Catp-binding.for.122280-123842.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.122280-123842.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.122280-123842.Ar_EST_120301b_c2796%7Catp-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig377%7Csenescence.for.121284-123104.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.121284-123104.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.121284-123104.120301b_Contig377%7Csenescence.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2715%7Catp-binding.for.123362-125173.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.123362-125173.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.123362-125173.Ar_EST_120301b_c2715%7Catp-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15601%7C3-beta.for.124944-126129.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.124944-126129.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.124944-126129.Ar_EST_120301b_c15601%7C3-beta.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1184%7C3-beta.for.125166-126821.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.125166-126821.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.125166-126821.Ar_EST_120301b_c1184%7C3-beta.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1082%7Csyntaxin.for.126182-127650.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.126182-127650.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.126182-127650.120301b_Contig1082%7Csyntaxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14083%7Chypothetical.for.130889-132167.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.130889-132167.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.130889-132167.Ar_EST_120301b_c14083%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2116%7Chat.for.130681-132010.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.130681-132010.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.130681-132010.Ar_EST_120301b_c2116%7Chat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12752%7Cbg01.for.134379-135767.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.134379-135767.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.134379-135767.Ar_EST_120301b_c12752%7Cbg01.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1133%7Cbg04-.for.136477-137733.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.136477-137733.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.136477-137733.Ar_EST_120301b_c1133%7Cbg04-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3822%7Cpiggybac.for.136920-138103.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.136920-138103.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.136920-138103.Ar_EST_120301b_c3822%7Cpiggybac.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c422%7Cmeloidogyne.for.135457-137120.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.135457-137120.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.135457-137120.Ar_EST_120301b_c422%7Cmeloidogyne.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19525%7Caj677057.for.136522-137693.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.136522-137693.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.136522-137693.Ar_EST_120301b_c19525%7Caj677057.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3325%7Cmeloidogyne.for.135463-137087.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.135463-137087.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.135463-137087.Ar_EST_120301b_c3325%7Cmeloidogyne.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8009%7Cbg04-.for.136027-137733.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.136027-137733.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.136027-137733.Ar_EST_120301b_c8009%7Cbg04-.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:55 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:55 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:55 now processing 0 total clusters:55 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:55 now processing 0 total clusters:55 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:55 now processing 0 total clusters:55 now processing 0 ...processing 0 of 2 ...processing 1 of 2 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:29 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:50 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:58 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:52 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:51 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:35 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:33 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091245%7Cgb%7CEFC44893%2E1%7C.for.2058-3448.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.2058-3448.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.2058-3448.gi%7C284091245%7Cgb%7CEFC44893%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088206%7Cgb%7CEFC41871%2E1%7C.for.9726-11381.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.9726-11381.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.9726-11381.gi%7C284088206%7Cgb%7CEFC41871%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090769%7Cgb%7CEFC44419%2E1%7C.for.11879-13257.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.11879-13257.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.11879-13257.gi%7C284090769%7Cgb%7CEFC44419%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092544%7Cgb%7CEFC46186%2E1%7C.for.17599-19499.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.17599-19499.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.17599-19499.gi%7C284092544%7Cgb%7CEFC46186%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085562%7Cgb%7CEFC39245%2E1%7C.for.17599-19490.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.17599-19490.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.17599-19490.gi%7C284085562%7Cgb%7CEFC39245%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092809%7Cgb%7CEFC46449%2E1%7C.for.27176-28278.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.27176-28278.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.27176-28278.gi%7C284092809%7Cgb%7CEFC46449%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088713%7Cgb%7CEFC42375%2E1%7C.for.27173-28341.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.27173-28341.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.27173-28341.gi%7C284088713%7Cgb%7CEFC42375%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097108%7Cgb%7CEFC50735%2E1%7C.for.27176-28269.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.27176-28269.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.27176-28269.gi%7C284097108%7Cgb%7CEFC50735%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096122%7Cgb%7CEFC49751%2E1%7C.for.36570-37856.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.36570-37856.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.36570-37856.gi%7C284096122%7Cgb%7CEFC49751%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097049%7Cgb%7CEFC50676%2E1%7C.for.40766-44415.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.40766-44415.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.40766-44415.gi%7C284097049%7Cgb%7CEFC50676%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082919%7Cgb%7CEFC36629%2E1%7C.for.46933-48362.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.46933-48362.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.46933-48362.gi%7C284082919%7Cgb%7CEFC36629%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092761%7Cgb%7CEFC46402%2E1%7C.for.48607-51519.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.48607-51519.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.48607-51519.gi%7C284092761%7Cgb%7CEFC46402%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096668%7Cgb%7CEFC50295%2E1%7C.for.52038-56344.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.52038-56344.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.52038-56344.gi%7C284096668%7Cgb%7CEFC50295%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090381%7Cgb%7CEFC44033%2E1%7C.for.68085-69508.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.68085-69508.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.68085-69508.gi%7C284090381%7Cgb%7CEFC44033%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089187%7Cgb%7CEFC42846%2E1%7C.for.79484-80433.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.79484-80433.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.79484-80433.gi%7C284089187%7Cgb%7CEFC42846%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088520%7Cgb%7CEFC42183%2E1%7C.for.83220-85117.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.83220-85117.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.83220-85117.gi%7C284088520%7Cgb%7CEFC42183%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096554%7Cgb%7CEFC50182%2E1%7C.for.102484-104225.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.102484-104225.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.102484-104225.gi%7C284096554%7Cgb%7CEFC50182%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091744%7Cgb%7CEFC45389%2E1%7C.for.102814-104225.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.102814-104225.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.102814-104225.gi%7C284091744%7Cgb%7CEFC45389%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089709%7Cgb%7CEFC43365%2E1%7C.for.110724-112340.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.110724-112340.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.110724-112340.gi%7C284089709%7Cgb%7CEFC43365%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094401%7Cgb%7CEFC48035%2E1%7C.for.113245-114583.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.113245-114583.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.113245-114583.gi%7C284094401%7Cgb%7CEFC48035%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.115441-116531.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115441-116531.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115441-116531.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.for.115501-116582.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115501-116582.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115501-116582.gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.for.115498-116531.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115498-116531.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115498-116531.gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.for.115498-116531.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115498-116531.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115498-116531.gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.for.115444-116525.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115444-116525.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115444-116525.gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.for.115492-116870.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115492-116870.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115492-116870.gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.for.115504-116570.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115504-116570.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115504-116570.gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.for.115438-116525.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115438-116525.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115438-116525.gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.for.115480-116636.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115480-116636.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115480-116636.gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.for.115441-116543.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115441-116543.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115441-116543.gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.for.115522-116534.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115522-116534.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115522-116534.gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089974%7Cgb%7CEFC43628%2E1%7C.for.118498-119501.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.118498-119501.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.118498-119501.gi%7C284089974%7Cgb%7CEFC43628%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091629%7Cgb%7CEFC45275%2E1%7C.for.127450-128726.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.127450-128726.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.127450-128726.gi%7C284091629%7Cgb%7CEFC45275%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.13913-15501.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.13913-15501.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.13913-15501.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.17798-19299.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.17798-19299.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.17798-19299.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.26570-28870.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.26570-28870.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.26570-28870.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.31607-32320.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.31607-32320.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.31607-32320.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.36769-37656.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.36769-37656.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.36769-37656.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.37756-39930.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.37756-39930.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.37756-39930.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.40211-41156.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.40211-41156.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.40211-41156.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.45455-48162.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.45455-48162.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.45455-48162.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.63284-64945.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.63284-64945.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.63284-64945.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.68284-69308.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.68284-69308.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.68284-69308.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.73105-74011.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.73105-74011.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.73105-74011.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.75340-76365.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.75340-76365.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.75340-76365.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.110923-112140.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.110923-112140.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.110923-112140.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.112203-114443.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.112203-114443.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.112203-114443.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.118692-119467.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.118692-119467.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.118692-119467.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.121483-122904.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.121483-122904.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.121483-122904.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.125143-126621.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.125143-126621.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.125143-126621.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.135656-137638.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.135656-137638.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.135656-137638.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.2232-3500.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.2232-3500.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.2232-3500.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.9889-11184.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.9889-11184.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.9889-11184.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.15338-16982.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.15338-16982.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.15338-16982.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.17002-18066.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.17002-18066.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.17002-18066.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.20595-24662.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.20595-24662.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.20595-24662.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.28129-29075.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.28129-29075.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.28129-29075.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.29082-30163.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.29082-30163.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.29082-30163.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.30190-32714.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.30190-32714.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.30190-32714.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.35639-36729.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.35639-36729.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.35639-36729.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.40965-44215.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.40965-44215.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.40965-44215.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.48799-51319.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.48799-51319.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.48799-51319.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.52237-56144.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.52237-56144.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.52237-56144.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.59692-61161.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.59692-61161.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.59692-61161.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.61226-62092.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.61226-62092.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.61226-62092.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.66169-67070.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.66169-67070.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.66169-67070.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.80131-82212.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.80131-82212.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.80131-82212.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.82569-86660.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.82569-86660.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.82569-86660.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.86679-91991.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.86679-91991.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.86679-91991.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.102683-104153.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.102683-104153.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.102683-104153.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.109075-111013.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.109075-111013.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.109075-111013.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.115640-116916.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.115640-116916.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.115640-116916.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.117143-118225.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.117143-118225.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.117143-118225.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/40_0.119470-120424.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/40_0.119470-120424.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/40_0.119470-120424.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/41_0.122479-124973.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/41_0.122479-124973.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/41_0.122479-124973.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/42_0.126381-127450.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/42_0.126381-127450.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/42_0.126381-127450.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/43_0.127649-128526.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/43_0.127649-128526.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/43_0.127649-128526.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/44_0.130880-131967.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/44_0.130880-131967.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/44_0.130880-131967.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/45_0.134516-135567.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/45_0.134516-135567.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/45_0.134516-135567.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/46_0.136640-137535.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/46_0.136640-137535.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/46_0.136640-137535.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C34 Length: 50682 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:1 current j:0 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C34.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C34.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:3 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11308%7C---NA---.for.1103-2190.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1103-2190.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1103-2190.Ar_EST_120301b_rep_c11308%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1153%7Cswim.for.26-2179.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.26-2179.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.26-2179.120301b_Contig1153%7Cswim.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19191%7C---NA---.for.1562-3123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1562-3123.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1562-3123.Ar_EST_120301b_c19191%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5150%7C---NA---.for.1214-2476.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1214-2476.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1214-2476.Ar_EST_120301b_rep_c5150%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c231%7Cfamily.for.1007-2594.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1007-2594.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1007-2594.Ar_EST_120301b_c231%7Cfamily.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9632%7Cprotein.for.1527-3329.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1527-3329.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1527-3329.Ar_EST_120301b_rep_c9632%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4785%7Cheat.for.3667-6175.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3667-6175.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3667-6175.Ar_EST_120301b_rep_c4785%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c25%7Cheat.for.3677-6842.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3677-6842.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3677-6842.Ar_EST_120301b_c25%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14633%7Clipophosphoglycan.for.4974-6319.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.4974-6319.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.4974-6319.Ar_EST_120301b_rep_c14633%7Clipophosphoglycan.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10561%7Cphosphatidic.for.6674-8012.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.6674-8012.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.6674-8012.Ar_EST_120301b_c10561%7Cphosphatidic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12466%7Cmaruca_01_m20_smart5-seq1.for.9193-10445.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.9193-10445.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.9193-10445.Ar_EST_120301b_c12466%7Cmaruca_01_m20_smart5-seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig557%7Clyc-8-c11.for.12929-14444.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.12929-14444.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.12929-14444.120301b_Contig557%7Clyc-8-c11.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6187%7Chypothetical.for.12930-14470.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.12930-14470.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.12930-14470.Ar_EST_120301b_rep_c6187%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1369%7Cphospholipase.for.15235-18239.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.15235-18239.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.15235-18239.120301b_Contig1369%7Cphospholipase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16238%7Cactin-related.for.19436-20738.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.19436-20738.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.19436-20738.Ar_EST_120301b_rep_c16238%7Cactin-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6211%7Cactin-related.for.18930-20753.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.18930-20753.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.18930-20753.Ar_EST_120301b_rep_c6211%7Cactin-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig460%7Cactin-related.for.18789-20779.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.18789-20779.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.18789-20779.120301b_Contig460%7Cactin-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9473%7Ccre-arx-3.for.19027-20240.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.19027-20240.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.19027-20240.Ar_EST_120301b_rep_c9473%7Ccre-arx-3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9479%7Cswi2.for.20409-21857.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20409-21857.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20409-21857.Ar_EST_120301b_c9479%7Cswi2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3575%7Cswi.for.21456-23264.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.21456-23264.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.21456-23264.Ar_EST_120301b_c3575%7Cswi.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8684%7Cmeloidogyne.for.23339-24828.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.23339-24828.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.23339-24828.Ar_EST_120301b_c8684%7Cmeloidogyne.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13859%7Cpas.for.24923-26220.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.24923-26220.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.24923-26220.Ar_EST_120301b_c13859%7Cpas.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3752%7Cprotein.for.28758-30821.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.28758-30821.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.28758-30821.Ar_EST_120301b_c3752%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18512%7Catp-dependent.for.29537-30850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.29537-30850.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.29537-30850.Ar_EST_120301b_c18512%7Catp-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c92%7Cproprotein.for.30412-33324.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.30412-33324.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.30412-33324.Ar_EST_120301b_c92%7Cproprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig148%7Cdomain-containing.for.33636-35938.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.33636-35938.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.33636-35938.120301b_Contig148%7Cdomain-containing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1026%7Ccarbohydrate.for.38938-42088.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.38938-42088.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.38938-42088.120301b_Contig1026%7Ccarbohydrate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18266%7Ccbpn%3A.for.42317-43586.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.42317-43586.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.42317-43586.Ar_EST_120301b_c18266%7Ccbpn%3A.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16104%7Coxidoreductase.for.48145-49395.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.48145-49395.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.48145-49395.Ar_EST_120301b_c16104%7Coxidoreductase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18279%7Coxidoreductase.for.48626-49955.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.48626-49955.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.48626-49955.Ar_EST_120301b_c18279%7Coxidoreductase.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:13 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:6 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:13 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:8 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:12 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:9 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:12 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:12 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:8 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:8 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093550%7Cgb%7CEFC47187%2E1%7C.for.2823-4207.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.2823-4207.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.2823-4207.gi%7C284093550%7Cgb%7CEFC47187%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086161%7Cgb%7CEFC39839%2E1%7C.for.3811-6713.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3811-6713.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3811-6713.gi%7C284086161%7Cgb%7CEFC39839%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096519%7Cgb%7CEFC50147%2E1%7C.for.3718-6716.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3718-6716.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3718-6716.gi%7C284096519%7Cgb%7CEFC50147%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096247%7Cgb%7CEFC49875%2E1%7C.for.3811-6683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3811-6683.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3811-6683.gi%7C284096247%7Cgb%7CEFC49875%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C25986841%7Cgb%7CAAM93756%2E1%7C.for.3826-6656.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3826-6656.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3826-6656.gi%7C25986841%7Cgb%7CAAM93756%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091896%7Cgb%7CEFC45540%2E1%7C.for.15058-17428.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.15058-17428.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.15058-17428.gi%7C284091896%7Cgb%7CEFC45540%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086563%7Cgb%7CEFC40239%2E1%7C.for.15070-17413.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.15070-17413.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.15070-17413.gi%7C284086563%7Cgb%7CEFC40239%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083916%7Cgb%7CEFC37614%2E1%7C.for.15061-16741.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.15061-16741.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.15061-16741.gi%7C284083916%7Cgb%7CEFC37614%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083373%7Cgb%7CEFC37077%2E1%7C.for.16725-19001.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.16725-19001.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.16725-19001.gi%7C284083373%7Cgb%7CEFC37077%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082917%7Cgb%7CEFC36627%2E1%7C.for.18929-20742.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.18929-20742.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.18929-20742.gi%7C284082917%7Cgb%7CEFC36627%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096936%7Cgb%7CEFC50563%2E1%7C.for.20691-23059.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20691-23059.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20691-23059.gi%7C284096936%7Cgb%7CEFC50563%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093262%7Cgb%7CEFC46901%2E1%7C.for.20697-23032.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20697-23032.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20697-23032.gi%7C284093262%7Cgb%7CEFC46901%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085362%7Cgb%7CEFC39046%2E1%7C.for.20565-23233.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20565-23233.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20565-23233.gi%7C284085362%7Cgb%7CEFC39046%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093648%7Cgb%7CEFC47285%2E1%7C.for.20688-23206.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20688-23206.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20688-23206.gi%7C284093648%7Cgb%7CEFC47285%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095906%7Cgb%7CEFC49535%2E1%7C.for.20715-23062.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20715-23062.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20715-23062.gi%7C284095906%7Cgb%7CEFC49535%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087958%7Cgb%7CEFC41624%2E1%7C.for.20487-23215.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20487-23215.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20487-23215.gi%7C284087958%7Cgb%7CEFC41624%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096449%7Cgb%7CEFC50077%2E1%7C.for.30726-32926.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.30726-32926.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.30726-32926.gi%7C284096449%7Cgb%7CEFC50077%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089770%7Cgb%7CEFC43425%2E1%7C.for.45290-46981.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.45290-46981.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.45290-46981.gi%7C284089770%7Cgb%7CEFC43425%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093999%7Cgb%7CEFC47635%2E1%7C.for.45308-46900.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.45308-46900.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.45308-46900.gi%7C284093999%7Cgb%7CEFC47635%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084374%7Cgb%7CEFC38067%2E1%7C.for.48179-50148.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.48179-50148.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.48179-50148.gi%7C284084374%7Cgb%7CEFC38067%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:7 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:7 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:6 now processing 0 total clusters:6 now processing 0 total clusters:6 now processing 0 total clusters:6 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:6 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:6 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:9 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.13101-14294.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.13101-14294.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.13101-14294.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.15434-18039.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.15434-18039.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.15434-18039.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.19128-20553.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.19128-20553.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.19128-20553.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.20608-23064.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.20608-23064.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.20608-23064.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.23538-24628.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.23538-24628.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.23538-24628.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.25122-26022.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.25122-26022.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.25122-26022.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.30611-33124.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.30611-33124.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.30611-33124.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.33835-35738.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.33835-35738.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.33835-35738.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.39137-41888.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.39137-41888.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.39137-41888.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.225-2929.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.225-2929.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.225-2929.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.3022-6516.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.3022-6516.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.3022-6516.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.6873-7812.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.6873-7812.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.6873-7812.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.9392-10249.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.9392-10249.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.9392-10249.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.15257-17234.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.15257-17234.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.15257-17234.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.29732-30650.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.29732-30650.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.29732-30650.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.42516-43386.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.42516-43386.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.42516-43386.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.48344-49948.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.48344-49948.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.48344-49948.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C35 Length: 58974 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:4 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:1 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:5 current j:0 j_size:5 current j:1 j_size:5 current j:2 j_size:5 current j:3 j_size:5 current j:4 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C35.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C35.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8607%7Cgtp-binding.for.2-1886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.2-1886.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.2-1886.Ar_EST_120301b_c8607%7Cgtp-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6065%7Csubtilisin-like.for.2365-4444.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.2365-4444.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.2365-4444.Ar_EST_120301b_rep_c6065%7Csubtilisin-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1399%7Cn-ethylmaleimide.for.5160-6458.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.5160-6458.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.5160-6458.Ar_EST_120301b_c1399%7Cn-ethylmaleimide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11943%7Ccytochrome.for.7916-9267.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.7916-9267.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.7916-9267.Ar_EST_120301b_c11943%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9590%7Ccytochrome.for.8478-9742.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.8478-9742.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.8478-9742.Ar_EST_120301b_c9590%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1055%7Cregulator.for.12264-13963.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.12264-13963.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.12264-13963.120301b_Contig1055%7Cregulator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8207%7Ccytochrome.for.14989-17301.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.14989-17301.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.14989-17301.Ar_EST_120301b_c8207%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16878%7Chypothetical.for.18560-19916.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.18560-19916.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.18560-19916.Ar_EST_120301b_c16878%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12427%7Ctelomerase.for.22706-24114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.22706-24114.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.22706-24114.Ar_EST_120301b_c12427%7Ctelomerase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11557%7Cprotein.for.28505-30052.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.28505-30052.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.28505-30052.Ar_EST_120301b_c11557%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16891%7Czinc.for.29355-30729.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.29355-30729.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.29355-30729.Ar_EST_120301b_c16891%7Czinc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14460%7Cspastic.for.33103-34283.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.33103-34283.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.33103-34283.Ar_EST_120301b_c14460%7Cspastic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13834%7Cprotein.for.36324-37549.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.36324-37549.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.36324-37549.Ar_EST_120301b_c13834%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1421%7Ctestis.for.43982-45419.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.43982-45419.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.43982-45419.Ar_EST_120301b_c1421%7Ctestis.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16539%7C---NA---.for.46011-47317.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.46011-47317.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.46011-47317.Ar_EST_120301b_c16539%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11932%7Ce3.for.47499-48777.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.47499-48777.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.47499-48777.Ar_EST_120301b_c11932%7Ce3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12237%7Ctplate.for.52411-53828.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.52411-53828.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.52411-53828.Ar_EST_120301b_c12237%7Ctplate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1748%7Cpredicted.for.54228-55364.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.54228-55364.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.54228-55364.Ar_EST_120301b_c1748%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c112%7Cn-acyl.for.55635-57533.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.55635-57533.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.55635-57533.Ar_EST_120301b_c112%7Cn-acyl.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:52 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:39 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:61 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:47 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:51 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:32 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:44 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:50 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:50 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088120%7Cgb%7CEFC41785%2E1%7C.for.1-1806.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.1-1806.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.1-1806.gi%7C284088120%7Cgb%7CEFC41785%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081631%7Cgb%7CEFC35564%2E1%7C.for.5213-6594.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.5213-6594.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.5213-6594.gi%7C284081631%7Cgb%7CEFC35564%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089466%7Cgb%7CEFC43123%2E1%7C.for.7830-9733.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.7830-9733.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.7830-9733.gi%7C284089466%7Cgb%7CEFC43123%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083307%7Cgb%7CEFC37012%2E1%7C.for.13318-14336.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13318-14336.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13318-14336.gi%7C284083307%7Cgb%7CEFC37012%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090963%7Cgb%7CEFC44612%2E1%7C.for.13747-15125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13747-15125.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13747-15125.gi%7C284090963%7Cgb%7CEFC44612%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.for.14101-15107.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.14101-15107.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.14101-15107.gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081402%7Cgb%7CEFC35430%2E1%7C.for.14110-15161.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.14110-15161.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.14110-15161.gi%7C284081402%7Cgb%7CEFC35430%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096471%7Cgb%7CEFC50099%2E1%7C.for.13768-14993.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13768-14993.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13768-14993.gi%7C284096471%7Cgb%7CEFC50099%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094163%7Cgb%7CEFC47798%2E1%7C.for.13732-15062.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13732-15062.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13732-15062.gi%7C284094163%7Cgb%7CEFC47798%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091693%7Cgb%7CEFC45338%2E1%7C.for.13768-15032.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13768-15032.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13768-15032.gi%7C284091693%7Cgb%7CEFC45338%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095876%7Cgb%7CEFC49505%2E1%7C.for.13825-15098.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13825-15098.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13825-15098.gi%7C284095876%7Cgb%7CEFC49505%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093839%7Cgb%7CEFC47475%2E1%7C.for.14101-15107.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.14101-15107.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.14101-15107.gi%7C284093839%7Cgb%7CEFC47475%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094409%7Cgb%7CEFC48043%2E1%7C.for.15898-17326.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.15898-17326.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.15898-17326.gi%7C284094409%7Cgb%7CEFC48043%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095125%7Cgb%7CEFC48757%2E1%7C.for.15799-17275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.15799-17275.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.15799-17275.gi%7C284095125%7Cgb%7CEFC48757%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080983%7Cgb%7CEFC35253%2E1%7C.for.40888-42371.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42371.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42371.gi%7C284080983%7Cgb%7CEFC35253%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083648%7Cgb%7CEFC37349%2E1%7C.for.40888-42344.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42344.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42344.gi%7C284083648%7Cgb%7CEFC37349%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084263%7Cgb%7CEFC37957%2E1%7C.for.41095-42344.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41095-42344.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41095-42344.gi%7C284084263%7Cgb%7CEFC37957%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096419%7Cgb%7CEFC50047%2E1%7C.for.41068-42347.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41068-42347.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41068-42347.gi%7C284096419%7Cgb%7CEFC50047%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087065%7Cgb%7CEFC40737%2E1%7C.for.41398-42347.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41398-42347.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41398-42347.gi%7C284087065%7Cgb%7CEFC40737%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090976%7Cgb%7CEFC44625%2E1%7C.for.40888-42359.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42359.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42359.gi%7C284090976%7Cgb%7CEFC44625%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081047%7Cgb%7CEFC35275%2E1%7C.for.40888-42131.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42131.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42131.gi%7C284081047%7Cgb%7CEFC35275%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082158%7Cgb%7CEFC35924%2E1%7C.for.40888-42368.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42368.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42368.gi%7C284082158%7Cgb%7CEFC35924%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094671%7Cgb%7CEFC48304%2E1%7C.for.41038-42356.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41038-42356.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41038-42356.gi%7C284094671%7Cgb%7CEFC48304%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086669%7Cgb%7CEFC40344%2E1%7C.for.41263-42338.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41263-42338.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41263-42338.gi%7C284086669%7Cgb%7CEFC40344%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096635%7Cgb%7CEFC50262%2E1%7C.for.43934-46857.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.43934-46857.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.43934-46857.gi%7C284096635%7Cgb%7CEFC50262%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083461%7Cgb%7CEFC37164%2E1%7C.for.55969-57425.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.55969-57425.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.55969-57425.gi%7C284083461%7Cgb%7CEFC37164%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:7 now processing 0 total clusters:7 now processing 0 in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:4 now processing 0 total clusters:4 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:4 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:4 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:2 now processing 0 total clusters:2 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.201-1686.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.201-1686.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.201-1686.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.5359-6394.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.5359-6394.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.5359-6394.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.8029-9542.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.8029-9542.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.8029-9542.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.12463-14925.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.12463-14925.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.12463-14925.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.15188-17126.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.15188-17126.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.15188-17126.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.18743-19716.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.18743-19716.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.18743-19716.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.22905-23923.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.22905-23923.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.22905-23923.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.28704-30529.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.28704-30529.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.28704-30529.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.33302-37349.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.33302-37349.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.33302-37349.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.41087-42171.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.41087-42171.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.41087-42171.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.44133-47117.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.44133-47117.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.44133-47117.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.52610-53628.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.52610-53628.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.52610-53628.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.55834-57333.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.55834-57333.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.55834-57333.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C36 Length: 164851 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:4 current j:0 j_size:4 current j:1 j_size:4 current j:2 j_size:4 current j:3 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C36.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C36.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:8 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:10 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig681%7Cpredicted.for.1612-3428.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.1612-3428.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.1612-3428.120301b_Contig681%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig244%7Cpeptidase.for.1-2453.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.1-2453.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.1-2453.120301b_Contig244%7Cpeptidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10191%7Cprotein.for.7049-8512.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.7049-8512.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.7049-8512.Ar_EST_120301b_c10191%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16233%7Cpre-mrna-processing.for.7813-8914.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.7813-8914.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.7813-8914.Ar_EST_120301b_c16233%7Cpre-mrna-processing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c213%7C14-3-3.for.10760-12363.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.10760-12363.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.10760-12363.Ar_EST_120301b_c213%7C14-3-3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16140%7Culva.for.11130-12229.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.11130-12229.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.11130-12229.Ar_EST_120301b_rep_c16140%7Culva.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5489%7Clipoxygenase.for.8318-9929.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.8318-9929.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.8318-9929.Ar_EST_120301b_rep_c5489%7Clipoxygenase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig419%7Clipoxygenase.for.8371-10887.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.8371-10887.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.8371-10887.120301b_Contig419%7Clipoxygenase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c582%7Cprotein.for.9744-11960.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.9744-11960.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.9744-11960.Ar_EST_120301b_c582%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15523%7Chypothetical.for.12770-14142.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.12770-14142.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.12770-14142.Ar_EST_120301b_c15523%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17561%7Cexported.for.13626-14946.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.13626-14946.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.13626-14946.Ar_EST_120301b_c17561%7Cexported.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3144%7Cexported.for.13714-15185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.13714-15185.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.13714-15185.Ar_EST_120301b_c3144%7Cexported.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4715%7Cpyruvate.for.15987-18058.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.15987-18058.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.15987-18058.Ar_EST_120301b_rep_c4715%7Cpyruvate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8703%7Cadenylate.for.18415-20385.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.18415-20385.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.18415-20385.Ar_EST_120301b_c8703%7Cadenylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14309%7Cpshb008xj07f.for.19602-20811.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.19602-20811.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.19602-20811.Ar_EST_120301b_c14309%7Cpshb008xj07f.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2673%7Chypothetical.for.25046-26505.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.25046-26505.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.25046-26505.Ar_EST_120301b_c2673%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19713%7Cfigitidae.for.25465-26531.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.25465-26531.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.25465-26531.Ar_EST_120301b_c19713%7Cfigitidae.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10941%7Cunnamed.for.25267-26580.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.25267-26580.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.25267-26580.Ar_EST_120301b_c10941%7Cunnamed.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig952%7Calkaline.for.27039-28602.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.27039-28602.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.27039-28602.120301b_Contig952%7Calkaline.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1354%7Cvacuolar.for.29723-31176.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.29723-31176.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.29723-31176.Ar_EST_120301b_c1354%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2160%7Cheat.for.31661-33512.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.31661-33512.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.31661-33512.Ar_EST_120301b_c2160%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig72%7Cheat.for.32921-34988.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.32921-34988.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.32921-34988.120301b_Contig72%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14835%7Cheat.for.33292-34215.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.33292-34215.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.33292-34215.Ar_EST_120301b_c14835%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11328%7Cca00-xx-cs1-019-e03-.for.37444-38809.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.37444-38809.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.37444-38809.Ar_EST_120301b_c11328%7Cca00-xx-cs1-019-e03-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14706%7Capoptosis.for.38105-39109.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.38105-39109.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.38105-39109.Ar_EST_120301b_c14706%7Capoptosis.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13920%7Cnormalized.for.42436-43717.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.42436-43717.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.42436-43717.Ar_EST_120301b_c13920%7Cnormalized.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11389%7C---NA---.for.43257-45228.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.43257-45228.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.43257-45228.Ar_EST_120301b_c11389%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8045%7Chypothetical.for.44921-46139.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.44921-46139.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.44921-46139.Ar_EST_120301b_c8045%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c696%7Cmethyltransferase.for.45942-47448.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.45942-47448.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.45942-47448.Ar_EST_120301b_c696%7Cmethyltransferase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c479%7Cras.for.47229-48708.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.47229-48708.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.47229-48708.Ar_EST_120301b_c479%7Cras.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10880%7Ccagn.for.47999-49358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.47999-49358.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.47999-49358.Ar_EST_120301b_c10880%7Ccagn.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11023%7Cwoods.for.49911-51464.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.49911-51464.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.49911-51464.Ar_EST_120301b_c11023%7Cwoods.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11544%7Cmorn.for.51230-52774.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.51230-52774.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.51230-52774.Ar_EST_120301b_c11544%7Cmorn.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14618%7Cfp661852.for.52446-53539.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.52446-53539.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.52446-53539.Ar_EST_120301b_rep_c14618%7Cfp661852.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6769%7Cfp779243.for.52203-53852.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.52203-53852.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.52203-53852.Ar_EST_120301b_rep_c6769%7Cfp779243.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1926%7Cglyoxylate.for.53381-54954.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.53381-54954.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.53381-54954.Ar_EST_120301b_c1926%7Cglyoxylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19845%7Cmajor.for.55613-58074.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.55613-58074.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.55613-58074.Ar_EST_120301b_c19845%7Cmajor.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6910%7Cwd-40.for.57551-59082.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.57551-59082.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.57551-59082.Ar_EST_120301b_rep_c6910%7Cwd-40.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16202%7Cmkiaa0840.for.60733-62118.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.60733-62118.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.60733-62118.Ar_EST_120301b_c16202%7Cmkiaa0840.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1072%7Czinc.for.61536-63167.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.61536-63167.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.61536-63167.Ar_EST_120301b_c1072%7Czinc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7880%7Cprotein.for.64297-66068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.64297-66068.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.64297-66068.Ar_EST_120301b_c7880%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19724%7Ciris.for.63956-65289.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.63956-65289.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.63956-65289.Ar_EST_120301b_c19724%7Ciris.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18072%7C3-carboxymuconate.for.71894-73072.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.71894-73072.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.71894-73072.Ar_EST_120301b_c18072%7C3-carboxymuconate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18444%7C60s.for.80598-81815.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.80598-81815.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.80598-81815.Ar_EST_120301b_c18444%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig241%7Cpredicted.for.82554-84883.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.82554-84883.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.82554-84883.120301b_Contig241%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17780%7Cssalplnb505110.for.82703-83944.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.82703-83944.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.82703-83944.Ar_EST_120301b_c17780%7Cssalplnb505110.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15355%7C---NA---.for.89954-91419.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.89954-91419.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.89954-91419.Ar_EST_120301b_c15355%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17615%7Cdk939318.for.91151-92547.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.91151-92547.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.91151-92547.Ar_EST_120301b_c17615%7Cdk939318.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1920%7Cloc100125160.for.93005-94506.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.93005-94506.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.93005-94506.Ar_EST_120301b_c1920%7Cloc100125160.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c326%7Cpeptide-n.for.94452-96001.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.94452-96001.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.94452-96001.Ar_EST_120301b_c326%7Cpeptide-n.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1414%7Cpredicted.for.96429-97878.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.96429-97878.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.96429-97878.Ar_EST_120301b_c1414%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16511%7Cprotein.for.100071-101309.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100071-101309.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100071-101309.Ar_EST_120301b_c16511%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17541%7Csec14l1.for.100091-101441.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100091-101441.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100091-101441.Ar_EST_120301b_c17541%7Csec14l1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8021%7Cguanine.for.100862-102783.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100862-102783.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100862-102783.Ar_EST_120301b_c8021%7Cguanine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14826%7Cphenazine.for.112041-113316.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.112041-113316.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.112041-113316.Ar_EST_120301b_c14826%7Cphenazine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8891%7Cmacro.for.112626-114075.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.112626-114075.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.112626-114075.Ar_EST_120301b_c8891%7Cmacro.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9485%7Cer-golgi.for.113492-115258.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.113492-115258.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.113492-115258.Ar_EST_120301b_c9485%7Cer-golgi.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9610%7Cpeptide.for.115387-116807.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.115387-116807.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.115387-116807.Ar_EST_120301b_c9610%7Cpeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8797%7Cpseudouridine.for.116507-118099.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.116507-118099.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.116507-118099.Ar_EST_120301b_c8797%7Cpseudouridine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4203%7Cmitogen-activated.for.117483-119541.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117483-119541.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117483-119541.Ar_EST_120301b_rep_c4203%7Cmitogen-activated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig609%7Cmitogen-activated.for.118248-119740.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118248-119740.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118248-119740.120301b_Contig609%7Cmitogen-activated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20137%7Cchromatin.for.121160-123912.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.121160-123912.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.121160-123912.Ar_EST_120301b_c20137%7Cchromatin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7867%7Cpredicted.for.123600-125572.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.123600-125572.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.123600-125572.Ar_EST_120301b_c7867%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18812%7Cmetal.for.123289-124801.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.123289-124801.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.123289-124801.Ar_EST_120301b_c18812%7Cmetal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2196%7Cchromosome.for.124897-126496.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.124897-126496.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.124897-126496.Ar_EST_120301b_c2196%7Cchromosome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13274%7Cribose-5-phosphate.for.127761-129064.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.127761-129064.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.127761-129064.Ar_EST_120301b_c13274%7Cribose-5-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12734%7Cribose-5-phosphate.for.127554-129000.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.127554-129000.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.127554-129000.Ar_EST_120301b_c12734%7Cribose-5-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c862%7Cgtp-binding.for.129545-130880.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129545-130880.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129545-130880.Ar_EST_120301b_c862%7Cgtp-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12075%7Cras-related.for.129414-130749.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129414-130749.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129414-130749.Ar_EST_120301b_c12075%7Cras-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12517%7Cks20025f06.for.130671-131613.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.130671-131613.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.130671-131613.Ar_EST_120301b_c12517%7Cks20025f06.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15951%7Csplicing.for.130942-132303.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.130942-132303.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.130942-132303.Ar_EST_120301b_c15951%7Csplicing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14460%7Cspastic.for.140331-141326.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.140331-141326.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.140331-141326.Ar_EST_120301b_c14460%7Cspastic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11557%7Cprotein.for.144408-145922.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.144408-145922.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.144408-145922.Ar_EST_120301b_c11557%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16858%7Csensor.for.147185-148571.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.147185-148571.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.147185-148571.Ar_EST_120301b_c16858%7Csensor.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7923%7Cprotein.for.150560-152432.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.150560-152432.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.150560-152432.Ar_EST_120301b_c7923%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2557%7Ccentromere.for.150215-152133.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.150215-152133.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.150215-152133.Ar_EST_120301b_c2557%7Ccentromere.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16845%7Ccglsc1ng-t3-006_k21_17apr2009_085.for.159428-160814.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.159428-160814.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.159428-160814.Ar_EST_120301b_c16845%7Ccglsc1ng-t3-006_k21_17apr2009_085.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2868%7Clongevity.for.162089-164040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.162089-164040.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.162089-164040.Ar_EST_120301b_c2868%7Clongevity.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:41 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:33 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:29 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:53 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:46 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:46 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:58 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:32 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090638%7Cgb%7CEFC44289%2E1%7C.for.2846-5161.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.2846-5161.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.2846-5161.gi%7C284090638%7Cgb%7CEFC44289%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092635%7Cgb%7CEFC46276%2E1%7C.for.6522-8824.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.6522-8824.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.6522-8824.gi%7C284092635%7Cgb%7CEFC46276%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087213%7Cgb%7CEFC40884%2E1%7C.for.15979-17888.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.15979-17888.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.15979-17888.gi%7C284087213%7Cgb%7CEFC40884%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096878%7Cgb%7CEFC50505%2E1%7C.for.17488-18548.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.17488-18548.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.17488-18548.gi%7C284096878%7Cgb%7CEFC50505%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097085%7Cgb%7CEFC50712%2E1%7C.for.23058-25469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.23058-25469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.23058-25469.gi%7C284097085%7Cgb%7CEFC50712%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090588%7Cgb%7CEFC44239%2E1%7C.for.31826-34626.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.31826-34626.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.31826-34626.gi%7C284090588%7Cgb%7CEFC44239%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091692%7Cgb%7CEFC45337%2E1%7C.for.31688-35097.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.31688-35097.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.31688-35097.gi%7C284091692%7Cgb%7CEFC45337%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096964%7Cgb%7CEFC50591%2E1%7C.for.47338-48695.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.47338-48695.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.47338-48695.gi%7C284096964%7Cgb%7CEFC50591%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092317%7Cgb%7CEFC45959%2E1%7C.for.47227-48713.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.47227-48713.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.47227-48713.gi%7C284092317%7Cgb%7CEFC45959%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094675%7Cgb%7CEFC48308%2E1%7C.for.51188-52570.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.51188-52570.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.51188-52570.gi%7C284094675%7Cgb%7CEFC48308%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094767%7Cgb%7CEFC48400%2E1%7C.for.53430-54985.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.53430-54985.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.53430-54985.gi%7C284094767%7Cgb%7CEFC48400%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090385%7Cgb%7CEFC44037%2E1%7C.for.55683-57985.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.55683-57985.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.55683-57985.gi%7C284090385%7Cgb%7CEFC44037%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087326%7Cgb%7CEFC40996%2E1%7C.for.55683-58012.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.55683-58012.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.55683-58012.gi%7C284087326%7Cgb%7CEFC40996%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089393%7Cgb%7CEFC43051%2E1%7C.for.58456-60867.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.58456-60867.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.58456-60867.gi%7C284089393%7Cgb%7CEFC43051%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092889%7Cgb%7CEFC46529%2E1%7C.for.58606-60831.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.58606-60831.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.58606-60831.gi%7C284092889%7Cgb%7CEFC46529%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093346%7Cgb%7CEFC46984%2E1%7C.for.93791-96386.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.93791-96386.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.93791-96386.gi%7C284093346%7Cgb%7CEFC46984%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091412%7Cgb%7CEFC45059%2E1%7C.for.98827-100405.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.98827-100405.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.98827-100405.gi%7C284091412%7Cgb%7CEFC45059%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092652%7Cgb%7CEFC46293%2E1%7C.for.100758-102737.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100758-102737.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100758-102737.gi%7C284092652%7Cgb%7CEFC46293%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084774%7Cgb%7CEFC38463%2E1%7C.for.101315-102716.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.101315-102716.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.101315-102716.gi%7C284084774%7Cgb%7CEFC38463%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084712%7Cgb%7CEFC38402%2E1%7C.for.100785-102737.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100785-102737.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100785-102737.gi%7C284084712%7Cgb%7CEFC38402%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083518%7Cgb%7CEFC37220%2E1%7C.for.100776-102716.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100776-102716.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100776-102716.gi%7C284083518%7Cgb%7CEFC37220%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090770%7Cgb%7CEFC44420%2E1%7C.for.100977-102713.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100977-102713.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100977-102713.gi%7C284090770%7Cgb%7CEFC44420%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095980%7Cgb%7CEFC49609%2E1%7C.for.100770-102716.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100770-102716.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100770-102716.gi%7C284095980%7Cgb%7CEFC49609%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091782%7Cgb%7CEFC45427%2E1%7C.for.100941-101983.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100941-101983.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100941-101983.gi%7C284091782%7Cgb%7CEFC45427%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085503%7Cgb%7CEFC39186%2E1%7C.for.100785-102746.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100785-102746.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100785-102746.gi%7C284085503%7Cgb%7CEFC39186%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093388%7Cgb%7CEFC47026%2E1%7C.for.100995-101983.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100995-101983.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100995-101983.gi%7C284093388%7Cgb%7CEFC47026%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095344%7Cgb%7CEFC48975%2E1%7C.for.100782-102776.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100782-102776.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100782-102776.gi%7C284095344%7Cgb%7CEFC48975%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095754%7Cgb%7CEFC49384%2E1%7C.for.100851-102731.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100851-102731.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100851-102731.gi%7C284095754%7Cgb%7CEFC49384%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084944%7Cgb%7CEFC38632%2E1%7C.for.111621-113308.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.111621-113308.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.111621-113308.gi%7C284084944%7Cgb%7CEFC38632%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080802%7Cgb%7CEFC35193%2E1%7C.for.112682-114013.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.112682-114013.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.112682-114013.gi%7C284080802%7Cgb%7CEFC35193%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094932%7Cgb%7CEFC48564%2E1%7C.for.112845-113989.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.112845-113989.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.112845-113989.gi%7C284094932%7Cgb%7CEFC48564%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087397%7Cgb%7CEFC41067%2E1%7C.for.115312-117053.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.115312-117053.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.115312-117053.gi%7C284087397%7Cgb%7CEFC41067%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096928%7Cgb%7CEFC50555%2E1%7C.for.116338-118126.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.116338-118126.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.116338-118126.gi%7C284096928%7Cgb%7CEFC50555%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082445%7Cgb%7CEFC36163%2E1%7C.for.118317-119683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118317-119683.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118317-119683.gi%7C284082445%7Cgb%7CEFC36163%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091587%7Cgb%7CEFC45233%2E1%7C.for.118145-119079.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118145-119079.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118145-119079.gi%7C284091587%7Cgb%7CEFC45233%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097165%7Cgb%7CEFC50792%2E1%7C.for.117849-119659.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117849-119659.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117849-119659.gi%7C284097165%7Cgb%7CEFC50792%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081068%7Cgb%7CEFC35282%2E1%7C.for.117846-119242.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117846-119242.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117846-119242.gi%7C284081068%7Cgb%7CEFC35282%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094136%7Cgb%7CEFC47771%2E1%7C.for.117685-119707.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117685-119707.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117685-119707.gi%7C284094136%7Cgb%7CEFC47771%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090349%7Cgb%7CEFC44001%2E1%7C.for.117739-119683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117739-119683.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117739-119683.gi%7C284090349%7Cgb%7CEFC44001%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082443%7Cgb%7CEFC36161%2E1%7C.for.117712-119016.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117712-119016.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117712-119016.gi%7C284082443%7Cgb%7CEFC36161%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085688%7Cgb%7CEFC39370%2E1%7C.for.117739-119659.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117739-119659.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117739-119659.gi%7C284085688%7Cgb%7CEFC39370%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090237%7Cgb%7CEFC43890%2E1%7C.for.117858-119587.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117858-119587.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117858-119587.gi%7C284090237%7Cgb%7CEFC43890%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096572%7Cgb%7CEFC50200%2E1%7C.for.118121-119272.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118121-119272.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118121-119272.gi%7C284096572%7Cgb%7CEFC50200%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088224%7Cgb%7CEFC41889%2E1%7C.for.118154-119554.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118154-119554.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118154-119554.gi%7C284088224%7Cgb%7CEFC41889%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090447%7Cgb%7CEFC44099%2E1%7C.for.118118-119551.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118118-119551.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118118-119551.gi%7C284090447%7Cgb%7CEFC44099%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083991%7Cgb%7CEFC37688%2E1%7C.for.117849-119671.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117849-119671.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117849-119671.gi%7C284083991%7Cgb%7CEFC37688%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089853%7Cgb%7CEFC43508%2E1%7C.for.118106-119551.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118106-119551.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118106-119551.gi%7C284089853%7Cgb%7CEFC43508%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088374%7Cgb%7CEFC42038%2E1%7C.for.118139-119554.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118139-119554.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118139-119554.gi%7C284088374%7Cgb%7CEFC42038%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086220%7Cgb%7CEFC39898%2E1%7C.for.118022-119575.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118022-119575.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118022-119575.gi%7C284086220%7Cgb%7CEFC39898%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086311%7Cgb%7CEFC39988%2E1%7C.for.118371-119557.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118371-119557.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118371-119557.gi%7C284086311%7Cgb%7CEFC39988%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084616%7Cgb%7CEFC38307%2E1%7C.for.117852-119542.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117852-119542.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117852-119542.gi%7C284084616%7Cgb%7CEFC38307%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087921%7Cgb%7CEFC41587%2E1%7C.for.118590-119671.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118590-119671.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118590-119671.gi%7C284087921%7Cgb%7CEFC41587%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089145%7Cgb%7CEFC42804%2E1%7C.for.117846-119668.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117846-119668.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117846-119668.gi%7C284089145%7Cgb%7CEFC42804%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090070%7Cgb%7CEFC43724%2E1%7C.for.118157-119560.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118157-119560.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118157-119560.gi%7C284090070%7Cgb%7CEFC43724%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093567%7Cgb%7CEFC47204%2E1%7C.for.118106-119281.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118106-119281.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118106-119281.gi%7C284093567%7Cgb%7CEFC47204%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097055%7Cgb%7CEFC50682%2E1%7C.for.119366-121330.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.119366-121330.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.119366-121330.gi%7C284097055%7Cgb%7CEFC50682%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088135%7Cgb%7CEFC41800%2E1%7C.for.127290-128284.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.127290-128284.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.127290-128284.gi%7C284088135%7Cgb%7CEFC41800%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092330%7Cgb%7CEFC45972%2E1%7C.for.129550-130820.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129550-130820.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129550-130820.gi%7C284092330%7Cgb%7CEFC45972%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085175%7Cgb%7CEFC38861%2E1%7C.for.129559-130835.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129559-130835.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129559-130835.gi%7C284085175%7Cgb%7CEFC38861%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087489%7Cgb%7CEFC41158%2E1%7C.for.129436-130832.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129436-130832.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129436-130832.gi%7C284087489%7Cgb%7CEFC41158%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086692%7Cgb%7CEFC40367%2E1%7C.for.129559-130835.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129559-130835.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129559-130835.gi%7C284086692%7Cgb%7CEFC40367%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093218%7Cgb%7CEFC46857%2E1%7C.for.129559-130811.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129559-130811.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129559-130811.gi%7C284093218%7Cgb%7CEFC46857%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095576%7Cgb%7CEFC49206%2E1%7C.for.129424-130829.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129424-130829.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129424-130829.gi%7C284095576%7Cgb%7CEFC49206%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080992%7Cgb%7CEFC35256%2E1%7C.for.129547-130676.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129547-130676.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129547-130676.gi%7C284080992%7Cgb%7CEFC35256%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089507%7Cgb%7CEFC43164%2E1%7C.for.129559-130829.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129559-130829.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129559-130829.gi%7C284089507%7Cgb%7CEFC43164%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092994%7Cgb%7CEFC46634%2E1%7C.for.129670-130817.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129670-130817.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129670-130817.gi%7C284092994%7Cgb%7CEFC46634%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093669%7Cgb%7CEFC47306%2E1%7C.for.130259-132474.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.130259-132474.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.130259-132474.gi%7C284093669%7Cgb%7CEFC47306%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090027%7Cgb%7CEFC43681%2E1%7C.for.132434-133461.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.132434-133461.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.132434-133461.gi%7C284090027%7Cgb%7CEFC43681%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089533%7Cgb%7CEFC43190%2E1%7C.for.150502-152561.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.150502-152561.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.150502-152561.gi%7C284089533%7Cgb%7CEFC43190%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088991%7Cgb%7CEFC42651%2E1%7C.for.153131-154812.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.153131-154812.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.153131-154812.gi%7C284088991%7Cgb%7CEFC42651%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087025%7Cgb%7CEFC40697%2E1%7C.for.153125-154812.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.153125-154812.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.153125-154812.gi%7C284087025%7Cgb%7CEFC40697%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096724%7Cgb%7CEFC50351%2E1%7C.for.157597-158705.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.157597-158705.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.157597-158705.gi%7C284096724%7Cgb%7CEFC50351%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 10 ...processing 1 of 10 ...processing 2 of 10 ...processing 3 of 10 ...processing 4 of 10 ...processing 5 of 10 ...processing 6 of 10 ...processing 7 of 10 ...processing 8 of 10 ...processing 9 of 10 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:17 now processing 0 total clusters:17 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 ...processing 0 of 10 ...processing 1 of 10 ...processing 2 of 10 ...processing 3 of 10 ...processing 4 of 10 ...processing 5 of 10 ...processing 6 of 10 ...processing 7 of 10 ...processing 8 of 10 ...processing 9 of 10 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.0-3228.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.0-3228.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.0-3228.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.12969-14985.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.12969-14985.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.12969-14985.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.23257-26383.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.23257-26383.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.23257-26383.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.50110-51272.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.50110-51272.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.50110-51272.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.51429-54785.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.51429-54785.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.51429-54785.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.57750-60667.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.57750-60667.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.57750-60667.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.60932-62967.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.60932-62967.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.60932-62967.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.82753-84683.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.82753-84683.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.82753-84683.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.90153-92347.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.90153-92347.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.90153-92347.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.100270-101241.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.100270-101241.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.100270-101241.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.115511-119540.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.115511-119540.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.115511-119540.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.119565-121130.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.119565-121130.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.119565-121130.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.121359-126296.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.121359-126296.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.121359-126296.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.127489-128084.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.127489-128084.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.127489-128084.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.153119-154724.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.153119-154724.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.153119-154724.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.3045-4961.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.3045-4961.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.3045-4961.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.6721-10687.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.6721-10687.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.6721-10687.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.16178-18351.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.16178-18351.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.16178-18351.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.18609-20623.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.18609-20623.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.18609-20623.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.27238-28402.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.27238-28402.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.27238-28402.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.31855-34897.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.31855-34897.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.31855-34897.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.37643-39024.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.37643-39024.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.37643-39024.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.42626-43522.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.42626-43522.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.42626-43522.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.46141-47248.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.46141-47248.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.46141-47248.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.47426-49166.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.47426-49166.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.47426-49166.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.55882-57812.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.55882-57812.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.55882-57812.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.64155-65868.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.64155-65868.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.64155-65868.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.72064-72872.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.72064-72872.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.72064-72872.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.80797-81615.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.80797-81615.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.80797-81615.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.93204-96186.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.93204-96186.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.93204-96186.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.96628-97678.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.96628-97678.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.96628-97678.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.99026-100205.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.99026-100205.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.99026-100205.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.100957-102583.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.100957-102583.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.100957-102583.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.111820-115058.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.111820-115058.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.111820-115058.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.127753-128864.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.127753-128864.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.127753-128864.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.129613-132274.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.129613-132274.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.129613-132274.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.140372-141147.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.140372-141147.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.140372-141147.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.144590-145738.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.144590-145738.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.144590-145738.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.147384-148390.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.147384-148390.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.147384-148390.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.150414-152436.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.150414-152436.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.150414-152436.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/40_0.157796-158505.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/40_0.157796-158505.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/40_0.157796-158505.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/41_0.159627-160614.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/41_0.159627-160614.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/41_0.159627-160614.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/42_0.162288-163840.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/42_0.162288-163840.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/42_0.162288-163840.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C37 Length: 131203 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:4 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:4 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:4 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:7 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:3 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:5 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:6 current j:0 j_size:6 current j:1 j_size:6 current j:2 j_size:6 current j:3 j_size:6 current j:4 j_size:6 current j:5 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C37.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C37.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12507%7Ccs00-c2-003-048-e05-.for.491-1869.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.491-1869.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.491-1869.Ar_EST_120301b_c12507%7Ccs00-c2-003-048-e05-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14016%7C000601kaaa001072ht.for.4721-5746.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.4721-5746.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.4721-5746.Ar_EST_120301b_rep_c14016%7C000601kaaa001072ht.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6435%7C000601kaaa001072ht.for.4632-5746.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.4632-5746.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.4632-5746.Ar_EST_120301b_rep_c6435%7C000601kaaa001072ht.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4185%7C000601kaaa001072ht.for.4067-5991.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.4067-5991.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.4067-5991.Ar_EST_120301b_rep_c4185%7C000601kaaa001072ht.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16295%7Ccalcineurin.for.5634-7049.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.5634-7049.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.5634-7049.Ar_EST_120301b_c16295%7Ccalcineurin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12858%7Cran-binding.for.7174-8599.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.7174-8599.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.7174-8599.Ar_EST_120301b_c12858%7Cran-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3327%7Cran-binding.for.6907-8456.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.6907-8456.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.6907-8456.Ar_EST_120301b_c3327%7Cran-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1425%7Cprotein.for.8613-11356.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.8613-11356.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.8613-11356.Ar_EST_120301b_c1425%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6272%7Cprotein.for.9901-11336.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.9901-11336.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.9901-11336.Ar_EST_120301b_rep_c6272%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4396%7Cprotein.for.9311-11267.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.9311-11267.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.9311-11267.Ar_EST_120301b_rep_c4396%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14041%7Cvacuolar.for.9928-10981.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.9928-10981.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.9928-10981.Ar_EST_120301b_rep_c14041%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13503%7Cvacuolar.for.9120-10058.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.9120-10058.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.9120-10058.Ar_EST_120301b_rep_c13503%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c404%7Cvacuolar.for.15625-17344.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.15625-17344.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.15625-17344.Ar_EST_120301b_c404%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18351%7C---NA---.for.17275-18537.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.17275-18537.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.17275-18537.Ar_EST_120301b_rep_c18351%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12162%7Cvacuolar.for.18168-19578.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.18168-19578.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.18168-19578.Ar_EST_120301b_c12162%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2368%7Cfp322549.for.19883-21105.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.19883-21105.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.19883-21105.Ar_EST_120301b_c2368%7Cfp322549.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9387%7Cdiphthamide.for.26530-28351.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.26530-28351.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.26530-28351.Ar_EST_120301b_c9387%7Cdiphthamide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2037%7Cui-ff-if0-abs-g-23-0-.for.28217-29702.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.28217-29702.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.28217-29702.Ar_EST_120301b_c2037%7Cui-ff-if0-abs-g-23-0-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17943%7Cdimethyladenosine.for.29578-30676.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.29578-30676.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.29578-30676.Ar_EST_120301b_c17943%7Cdimethyladenosine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13089%7Cbaac-.for.30820-32167.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.30820-32167.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.30820-32167.Ar_EST_120301b_c13089%7Cbaac-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2504%7Crhodanese.for.31745-33327.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.31745-33327.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.31745-33327.Ar_EST_120301b_c2504%7Crhodanese.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1282%7Cextracellular.for.33470-35788.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33470-35788.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33470-35788.120301b_Contig1282%7Cextracellular.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12161%7Cvacuolar.for.38373-40000.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.38373-40000.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.38373-40000.Ar_EST_120301b_c12161%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig790%7Cvacuolar.for.37386-39178.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.37386-39178.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.37386-39178.120301b_Contig790%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1270%7Cvacuolar.for.39529-40776.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.39529-40776.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.39529-40776.Ar_EST_120301b_c1270%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12489%7Cpenicillin.for.40597-42131.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.40597-42131.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.40597-42131.Ar_EST_120301b_c12489%7Cpenicillin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18123%7Cbeta-lactam.for.41777-43536.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.41777-43536.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.41777-43536.Ar_EST_120301b_c18123%7Cbeta-lactam.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9957%7Cnicotinate-nucleotide.for.43386-44881.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.43386-44881.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.43386-44881.Ar_EST_120301b_c9957%7Cnicotinate-nucleotide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8570%7Cprotein.for.44400-46657.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.44400-46657.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.44400-46657.Ar_EST_120301b_c8570%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17383%7Cdis3-like.for.46455-47626.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.46455-47626.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.46455-47626.Ar_EST_120301b_c17383%7Cdis3-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9772%7Cribonuclease.for.47164-48608.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.47164-48608.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.47164-48608.Ar_EST_120301b_c9772%7Cribonuclease.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c911%7Cww.for.49424-50682.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.49424-50682.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.49424-50682.Ar_EST_120301b_c911%7Cww.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17350%7Cpre-mrna-processing.for.49950-51324.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.49950-51324.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.49950-51324.Ar_EST_120301b_c17350%7Cpre-mrna-processing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3739%7Cmagnesium.for.50593-52588.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.50593-52588.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.50593-52588.Ar_EST_120301b_c3739%7Cmagnesium.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13962%7Chypothetical.for.52735-53994.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.52735-53994.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.52735-53994.Ar_EST_120301b_c13962%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c754%7Cixodes.for.53555-55026.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.53555-55026.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.53555-55026.Ar_EST_120301b_c754%7Cixodes.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12519%7C---NA---.for.53383-54729.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.53383-54729.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.53383-54729.Ar_EST_120301b_c12519%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9860%7Cmitochondrial.for.54379-56046.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.54379-56046.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.54379-56046.Ar_EST_120301b_c9860%7Cmitochondrial.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10748%7Cprotein.for.55764-57467.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.55764-57467.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.55764-57467.Ar_EST_120301b_c10748%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1156%7Cring.for.57207-58362.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.57207-58362.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.57207-58362.120301b_Contig1156%7Cring.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3551%7Cinosine.for.58094-59535.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.58094-59535.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.58094-59535.Ar_EST_120301b_c3551%7Cinosine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13720%7Caig2.for.59895-61233.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.59895-61233.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.59895-61233.Ar_EST_120301b_c13720%7Caig2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3065%7Caig2.for.59386-60746.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.59386-60746.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.59386-60746.Ar_EST_120301b_c3065%7Caig2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13535%7Cagencourt_85392014.for.59437-60831.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.59437-60831.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.59437-60831.Ar_EST_120301b_c13535%7Cagencourt_85392014.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6824%7C26s.for.61052-62221.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.61052-62221.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.61052-62221.Ar_EST_120301b_rep_c6824%7C26s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13614%7Cglucose-6-phosphate.for.63769-64983.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.63769-64983.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.63769-64983.Ar_EST_120301b_rep_c13614%7Cglucose-6-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17330%7Cglucose-6-phosphate.for.63507-64746.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.63507-64746.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.63507-64746.Ar_EST_120301b_c17330%7Cglucose-6-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1053%7Cglucose-6-phosphate.for.62782-64983.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.62782-64983.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.62782-64983.120301b_Contig1053%7Cglucose-6-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14588%7Cglucose-6-phosphate.for.63555-64786.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.63555-64786.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.63555-64786.Ar_EST_120301b_rep_c14588%7Cglucose-6-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig737%7Catp-dependent.for.64484-66186.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.64484-66186.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.64484-66186.120301b_Contig737%7Catp-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15766%7Cuf439.for.68551-69854.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.68551-69854.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.68551-69854.Ar_EST_120301b_c15766%7Cuf439.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12200%7C---NA---.for.70153-71070.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.70153-71070.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.70153-71070.Ar_EST_120301b_rep_c12200%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5884%7Cperoxisome.for.69596-71063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.69596-71063.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.69596-71063.Ar_EST_120301b_rep_c5884%7Cperoxisome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16068%7Cbrainf100763c7.for.70334-71744.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.70334-71744.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.70334-71744.Ar_EST_120301b_c16068%7Cbrainf100763c7.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8312%7C6-phosphogluconolactonase.for.71635-73107.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.71635-73107.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.71635-73107.Ar_EST_120301b_c8312%7C6-phosphogluconolactonase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19105%7C6-phosphogluconolactonase.for.71404-72896.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.71404-72896.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.71404-72896.Ar_EST_120301b_c19105%7C6-phosphogluconolactonase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9286%7Cdual.for.72557-73881.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.72557-73881.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.72557-73881.Ar_EST_120301b_c9286%7Cdual.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1071%7C5.for.73667-75687.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.73667-75687.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.73667-75687.120301b_Contig1071%7C5.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10743%7Cbtb.for.77101-78400.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.77101-78400.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.77101-78400.Ar_EST_120301b_c10743%7Cbtb.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11327%7Cprotein.for.77757-79514.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.77757-79514.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.77757-79514.Ar_EST_120301b_c11327%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15586%7Cphaseolus.for.80442-81906.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.80442-81906.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.80442-81906.Ar_EST_120301b_c15586%7Cphaseolus.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11139%7Csymbiotic.for.83479-84775.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.83479-84775.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.83479-84775.Ar_EST_120301b_c11139%7Csymbiotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig892%7Cregulator.for.87573-89936.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.87573-89936.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.87573-89936.120301b_Contig892%7Cregulator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1263%7C-dimethylguanosine.for.89157-90558.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.89157-90558.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.89157-90558.Ar_EST_120301b_c1263%7C-dimethylguanosine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2059%7Cn.for.89882-91416.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.89882-91416.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.89882-91416.Ar_EST_120301b_c2059%7Cn.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11524%7Clikely.for.90627-91691.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.90627-91691.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.90627-91691.Ar_EST_120301b_c11524%7Clikely.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16790%7Cchp.for.93546-94847.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.93546-94847.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.93546-94847.Ar_EST_120301b_c16790%7Cchp.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18329%7C---NA---.for.94213-95227.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.94213-95227.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.94213-95227.Ar_EST_120301b_rep_c18329%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20520%7Cwd-repeat.for.95947-98462.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.95947-98462.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.95947-98462.Ar_EST_120301b_c20520%7Cwd-repeat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c880%7C---NA---.for.98021-99356.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.98021-99356.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.98021-99356.Ar_EST_120301b_c880%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c173%7Cprotein.for.98627-100080.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.98627-100080.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.98627-100080.Ar_EST_120301b_c173%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19251%7Ceb3rody01bclmk.for.99458-100778.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.99458-100778.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.99458-100778.Ar_EST_120301b_c19251%7Ceb3rody01bclmk.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig723%7Cprotein.for.100478-102532.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.100478-102532.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.100478-102532.120301b_Contig723%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2239%7Cprotein.for.101740-103409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.101740-103409.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.101740-103409.Ar_EST_120301b_c2239%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1305%7Cpredicted.for.103067-104669.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.103067-104669.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.103067-104669.120301b_Contig1305%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig198%7Cphospholipid-binding.for.103629-105872.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.103629-105872.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.103629-105872.120301b_Contig198%7Cphospholipid-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7974%7Cacetyl-.for.108069-109618.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.108069-109618.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.108069-109618.Ar_EST_120301b_c7974%7Cacetyl-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16015%7Ccg17746-.for.109104-110368.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.109104-110368.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.109104-110368.Ar_EST_120301b_rep_c16015%7Ccg17746-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4490%7Cprotein.for.108968-110877.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.108968-110877.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.108968-110877.Ar_EST_120301b_rep_c4490%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4669%7Cprotein.for.108973-110818.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.108973-110818.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.108973-110818.Ar_EST_120301b_rep_c4669%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13688%7Cpredicted.for.109133-110247.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.109133-110247.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.109133-110247.Ar_EST_120301b_rep_c13688%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20276%7Cprotein.for.110214-111786.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.110214-111786.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.110214-111786.Ar_EST_120301b_c20276%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1941%7Catpase.for.111493-112784.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.111493-112784.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.111493-112784.Ar_EST_120301b_c1941%7Catpase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2591%7Cprotein.for.113440-115358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.113440-115358.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.113440-115358.Ar_EST_120301b_c2591%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7163%7Ceukaryotic.for.117437-119179.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117437-119179.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117437-119179.Ar_EST_120301b_rep_c7163%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4765%7Cded1p.for.117970-119554.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117970-119554.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117970-119554.Ar_EST_120301b_rep_c4765%7Cded1p.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19714%7Ceukaryotic.for.117455-118809.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117455-118809.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117455-118809.Ar_EST_120301b_rep_c19714%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10202%7Ceukaryotic.for.117728-119153.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117728-119153.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117728-119153.Ar_EST_120301b_rep_c10202%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11350%7Cmitogen-activated.for.123622-124964.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.123622-124964.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.123622-124964.Ar_EST_120301b_c11350%7Cmitogen-activated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2610%7Caromatic.for.124921-126417.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.124921-126417.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.124921-126417.Ar_EST_120301b_c2610%7Caromatic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11315%7Camino.for.125849-127108.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.125849-127108.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.125849-127108.Ar_EST_120301b_c11315%7Camino.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10428%7Creverse.for.128141-129655.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.128141-129655.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.128141-129655.Ar_EST_120301b_c10428%7Creverse.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8273%7Ctpa_exp%3A.for.126388-131134.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.126388-131134.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.126388-131134.Ar_EST_120301b_c8273%7Ctpa_exp%3A.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:62 now processing 0 total clusters:62 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:62 now processing 0 total clusters:62 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:62 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:62 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:62 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:62 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:52 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:41 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:40 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:48 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:50 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:56 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:41 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:42 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:43 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:33 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084733%7Cgb%7CEFC38422%2E1%7C.for.5543-7040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.5543-7040.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.5543-7040.gi%7C284084733%7Cgb%7CEFC38422%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085167%7Cgb%7CEFC38853%2E1%7C.for.8727-11341.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.8727-11341.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.8727-11341.gi%7C284085167%7Cgb%7CEFC38853%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096132%7Cgb%7CEFC49761%2E1%7C.for.26597-28720.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.26597-28720.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.26597-28720.gi%7C284096132%7Cgb%7CEFC49761%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083629%7Cgb%7CEFC37330%2E1%7C.for.28923-30631.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.28923-30631.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.28923-30631.gi%7C284083629%7Cgb%7CEFC37330%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082445%7Cgb%7CEFC36163%2E1%7C.for.34189-35447.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34189-35447.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34189-35447.gi%7C284082445%7Cgb%7CEFC36163%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087192%7Cgb%7CEFC40863%2E1%7C.for.33683-35435.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33683-35435.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33683-35435.gi%7C284087192%7Cgb%7CEFC40863%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097165%7Cgb%7CEFC50792%2E1%7C.for.33656-35504.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33656-35504.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33656-35504.gi%7C284097165%7Cgb%7CEFC50792%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089173%7Cgb%7CEFC42832%2E1%7C.for.33683-35435.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33683-35435.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33683-35435.gi%7C284089173%7Cgb%7CEFC42832%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081068%7Cgb%7CEFC35282%2E1%7C.for.33665-35102.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33665-35102.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33665-35102.gi%7C284081068%7Cgb%7CEFC35282%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.for.34123-35147.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34123-35147.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34123-35147.gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092309%7Cgb%7CEFC45952%2E1%7C.for.34099-35018.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34099-35018.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34099-35018.gi%7C284092309%7Cgb%7CEFC45952%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094136%7Cgb%7CEFC47771%2E1%7C.for.33572-35501.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33572-35501.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33572-35501.gi%7C284094136%7Cgb%7CEFC47771%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090349%7Cgb%7CEFC44001%2E1%7C.for.33662-35564.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33662-35564.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33662-35564.gi%7C284090349%7Cgb%7CEFC44001%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082443%7Cgb%7CEFC36161%2E1%7C.for.33668-34943.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33668-34943.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33668-34943.gi%7C284082443%7Cgb%7CEFC36161%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085688%7Cgb%7CEFC39370%2E1%7C.for.33617-35537.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33617-35537.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33617-35537.gi%7C284085688%7Cgb%7CEFC39370%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092790%7Cgb%7CEFC46430%2E1%7C.for.33680-35447.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33680-35447.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33680-35447.gi%7C284092790%7Cgb%7CEFC46430%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081402%7Cgb%7CEFC35430%2E1%7C.for.34147-35168.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34147-35168.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34147-35168.gi%7C284081402%7Cgb%7CEFC35430%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083991%7Cgb%7CEFC37688%2E1%7C.for.33563-35435.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33563-35435.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33563-35435.gi%7C284083991%7Cgb%7CEFC37688%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089853%7Cgb%7CEFC43508%2E1%7C.for.33907-35474.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33907-35474.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33907-35474.gi%7C284089853%7Cgb%7CEFC43508%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086220%7Cgb%7CEFC39898%2E1%7C.for.33895-35555.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33895-35555.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33895-35555.gi%7C284086220%7Cgb%7CEFC39898%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089128%7Cgb%7CEFC42787%2E1%7C.for.33871-35477.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33871-35477.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33871-35477.gi%7C284089128%7Cgb%7CEFC42787%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087921%7Cgb%7CEFC41587%2E1%7C.for.34528-35552.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34528-35552.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34528-35552.gi%7C284087921%7Cgb%7CEFC41587%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089145%7Cgb%7CEFC42804%2E1%7C.for.33632-35552.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33632-35552.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33632-35552.gi%7C284089145%7Cgb%7CEFC42804%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087906%7Cgb%7CEFC41573%2E1%7C.for.35089-37517.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.35089-37517.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.35089-37517.gi%7C284087906%7Cgb%7CEFC41573%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086843%7Cgb%7CEFC40517%2E1%7C.for.37402-40913.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.37402-40913.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.37402-40913.gi%7C284086843%7Cgb%7CEFC40517%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093100%7Cgb%7CEFC46739%2E1%7C.for.43418-45108.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.43418-45108.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.43418-45108.gi%7C284093100%7Cgb%7CEFC46739%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091410%7Cgb%7CEFC45057%2E1%7C.for.55767-57924.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.55767-57924.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.55767-57924.gi%7C284091410%7Cgb%7CEFC45057%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091249%7Cgb%7CEFC44897%2E1%7C.for.57245-58185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.57245-58185.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.57245-58185.gi%7C284091249%7Cgb%7CEFC44897%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096886%7Cgb%7CEFC50513%2E1%7C.for.58107-59550.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.58107-59550.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.58107-59550.gi%7C284096886%7Cgb%7CEFC50513%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094945%7Cgb%7CEFC48577%2E1%7C.for.62731-65120.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.62731-65120.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.62731-65120.gi%7C284094945%7Cgb%7CEFC48577%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090158%7Cgb%7CEFC43811%2E1%7C.for.64423-65709.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.64423-65709.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.64423-65709.gi%7C284090158%7Cgb%7CEFC43811%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083325%7Cgb%7CEFC37029%2E1%7C.for.72541-73910.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.72541-73910.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.72541-73910.gi%7C284083325%7Cgb%7CEFC37029%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091054%7Cgb%7CEFC44703%2E1%7C.for.77122-78884.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.77122-78884.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.77122-78884.gi%7C284091054%7Cgb%7CEFC44703%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086426%7Cgb%7CEFC40103%2E1%7C.for.89261-91623.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.89261-91623.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.89261-91623.gi%7C284086426%7Cgb%7CEFC40103%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087562%7Cgb%7CEFC41231%2E1%7C.for.91129-92600.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.91129-92600.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.91129-92600.gi%7C284087562%7Cgb%7CEFC41231%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088507%7Cgb%7CEFC42170%2E1%7C.for.96585-98264.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.96585-98264.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.96585-98264.gi%7C284088507%7Cgb%7CEFC42170%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090894%7Cgb%7CEFC44543%2E1%7C.for.98815-100028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.98815-100028.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.98815-100028.gi%7C284090894%7Cgb%7CEFC44543%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094387%7Cgb%7CEFC48021%2E1%7C.for.101777-103319.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.101777-103319.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.101777-103319.gi%7C284094387%7Cgb%7CEFC48021%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087483%7Cgb%7CEFC41152%2E1%7C.for.109338-110853.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.109338-110853.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.109338-110853.gi%7C284087483%7Cgb%7CEFC41152%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085542%7Cgb%7CEFC39225%2E1%7C.for.109010-110669.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.109010-110669.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.109010-110669.gi%7C284085542%7Cgb%7CEFC39225%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091466%7Cgb%7CEFC45112%2E1%7C.for.114033-115033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.114033-115033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.114033-115033.gi%7C284091466%7Cgb%7CEFC45112%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092518%7Cgb%7CEFC46160%2E1%7C.for.113626-115033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.113626-115033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.113626-115033.gi%7C284092518%7Cgb%7CEFC46160%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092387%7Cgb%7CEFC46029%2E1%7C.for.113569-115033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.113569-115033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.113569-115033.gi%7C284092387%7Cgb%7CEFC46029%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091231%7Cgb%7CEFC44879%2E1%7C.for.113626-115033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.113626-115033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.113626-115033.gi%7C284091231%7Cgb%7CEFC44879%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096309%7Cgb%7CEFC49937%2E1%7C.for.114033-115033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.114033-115033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.114033-115033.gi%7C284096309%7Cgb%7CEFC49937%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090160%7Cgb%7CEFC43813%2E1%7C.for.117468-119525.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117468-119525.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117468-119525.gi%7C284090160%7Cgb%7CEFC43813%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090298%7Cgb%7CEFC43950%2E1%7C.for.120511-122054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120511-122054.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120511-122054.gi%7C284090298%7Cgb%7CEFC43950%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081791%7Cgb%7CEFC35658%2E1%7C.for.120520-121706.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120520-121706.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120520-121706.gi%7C284081791%7Cgb%7CEFC35658%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096459%7Cgb%7CEFC50087%2E1%7C.for.120511-122392.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120511-122392.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120511-122392.gi%7C284096459%7Cgb%7CEFC50087%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093690%7Cgb%7CEFC47327%2E1%7C.for.121060-122404.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.121060-122404.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.121060-122404.gi%7C284093690%7Cgb%7CEFC47327%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095073%7Cgb%7CEFC48705%2E1%7C.for.120520-122392.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120520-122392.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120520-122392.gi%7C284095073%7Cgb%7CEFC48705%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083745%7Cgb%7CEFC37445%2E1%7C.for.120511-122051.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120511-122051.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120511-122051.gi%7C284083745%7Cgb%7CEFC37445%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 16 ...processing 1 of 16 ...processing 2 of 16 ...processing 3 of 16 ...processing 4 of 16 ...processing 5 of 16 ...processing 6 of 16 ...processing 7 of 16 ...processing 8 of 16 ...processing 9 of 16 ...processing 10 of 16 ...processing 11 of 16 ...processing 12 of 16 ...processing 13 of 16 ...processing 14 of 16 ...processing 15 of 16 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 ...processing 0 of 14 ...processing 1 of 14 ...processing 2 of 14 ...processing 3 of 14 ...processing 4 of 14 ...processing 5 of 14 ...processing 6 of 14 ...processing 7 of 14 ...processing 8 of 14 ...processing 9 of 14 ...processing 10 of 14 ...processing 11 of 14 ...processing 12 of 14 ...processing 13 of 14 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:30 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:30 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:30 now processing 0 total clusters:30 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.690-1692.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.690-1692.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.690-1692.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.4266-6856.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.4266-6856.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.4266-6856.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.8812-11160.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.8812-11160.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.8812-11160.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.26729-29502.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.26729-29502.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.26729-29502.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.31019-31967.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.31019-31967.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.31019-31967.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.33669-35588.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.33669-35588.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.33669-35588.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.37601-40713.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.37601-40713.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.37601-40713.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.44599-46457.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.44599-46457.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.44599-46457.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.46654-48408.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.46654-48408.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.46654-48408.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.50792-52388.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.50792-52388.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.50792-52388.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.52747-54826.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.52747-54826.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.52747-54826.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.55963-57724.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.55963-57724.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.55963-57724.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.62930-65986.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.62930-65986.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.62930-65986.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.68744-69654.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.68744-69654.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.68744-69654.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.70533-71547.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.70533-71547.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.70533-71547.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.71592-72907.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.71592-72907.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.71592-72907.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.73866-75487.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.73866-75487.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.73866-75487.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.93745-94651.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.93745-94651.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.93745-94651.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.96146-99156.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.96146-99156.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.96146-99156.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.99657-100578.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.99657-100578.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.99657-100578.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.103266-105672.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.103266-105672.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.103266-105672.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.109167-111586.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.109167-111586.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.109167-111586.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.111692-112584.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.111692-112584.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.111692-112584.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.113639-115158.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.113639-115158.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.113639-115158.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.117606-119325.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.117606-119325.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.117606-119325.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.128340-130208.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.128340-130208.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.128340-130208.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.7106-8399.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.7106-8399.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.7106-8399.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.15824-20905.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.15824-20905.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.15824-20905.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.29122-30476.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.29122-30476.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.29122-30476.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.31942-33158.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.31942-33158.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.31942-33158.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.35288-37317.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.35288-37317.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.35288-37317.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.40796-41931.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.40796-41931.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.40796-41931.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.41976-43336.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.41976-43336.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.41976-43336.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.43585-44908.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.43585-44908.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.43585-44908.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.50149-51215.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.50149-51215.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.50149-51215.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.54578-55855.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.54578-55855.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.54578-55855.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.57406-58213.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.57406-58213.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.57406-58213.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.58293-59350.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.58293-59350.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.58293-59350.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.59574-61033.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.59574-61033.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.59574-61033.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.69790-70870.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.69790-70870.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.69790-70870.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/40_0.72740-73710.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/40_0.72740-73710.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/40_0.72740-73710.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/41_0.77300-79314.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/41_0.77300-79314.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/41_0.77300-79314.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/42_0.80641-84575.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/42_0.80641-84575.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/42_0.80641-84575.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/43_0.87772-92400.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/43_0.87772-92400.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/43_0.87772-92400.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/44_0.100677-103209.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/44_0.100677-103209.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/44_0.100677-103209.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/45_0.120710-122204.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/45_0.120710-122204.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/45_0.120710-122204.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/46_0.125120-126908.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/46_0.125120-126908.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/46_0.125120-126908.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C38 Length: 133197 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:10 current j:0 j_size:10 current j:1 j_size:10 current j:2 j_size:10 current j:3 j_size:10 current j:4 j_size:10 current j:5 j_size:10 current j:6 j_size:10 current j:7 j_size:10 current j:8 j_size:10 current j:9 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C38.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C38.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:3 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15228%7Crheb.for.1-1268.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.1-1268.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.1-1268.Ar_EST_120301b_c15228%7Crheb.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16286%7Cmeloidogyne.for.1526-3096.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.1526-3096.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.1526-3096.Ar_EST_120301b_c16286%7Cmeloidogyne.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8400%7Chypothetical.for.826-2788.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.826-2788.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.826-2788.Ar_EST_120301b_c8400%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16746%7Cmc1-0049t-m146-h12-.for.7019-8207.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.7019-8207.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.7019-8207.Ar_EST_120301b_c16746%7Cmc1-0049t-m146-h12-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14558%7Cdedicator.for.7705-8887.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.7705-8887.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.7705-8887.Ar_EST_120301b_c14558%7Cdedicator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15786%7Cfn885936.for.10647-11929.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.10647-11929.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.10647-11929.Ar_EST_120301b_c15786%7Cfn885936.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1214%7Cphosphate.for.12409-14139.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.12409-14139.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.12409-14139.120301b_Contig1214%7Cphosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10859%7Cphosphate.for.13552-14841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.13552-14841.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.13552-14841.Ar_EST_120301b_c10859%7Cphosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16453%7Cpre-mrna.for.14309-15975.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.14309-15975.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.14309-15975.Ar_EST_120301b_c16453%7Cpre-mrna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7753%7Ctranslation.for.16013-17972.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.16013-17972.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.16013-17972.Ar_EST_120301b_c7753%7Ctranslation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14209%7Cpredicted.for.19709-20930.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.19709-20930.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.19709-20930.Ar_EST_120301b_c14209%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18465%7Cpredicted.for.20179-21432.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.20179-21432.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.20179-21432.Ar_EST_120301b_c18465%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12710%7Cixodes.for.20982-22492.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.20982-22492.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.20982-22492.Ar_EST_120301b_c12710%7Cixodes.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16149%7Cactin.for.22395-23718.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.22395-23718.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.22395-23718.Ar_EST_120301b_c16149%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3321%7Cfy454559.for.26643-28278.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.26643-28278.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.26643-28278.Ar_EST_120301b_c3321%7Cfy454559.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1245%7Cregulator.for.28414-30245.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.28414-30245.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.28414-30245.120301b_Contig1245%7Cregulator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8350%7Cglycoside.for.30495-32566.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.30495-32566.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.30495-32566.Ar_EST_120301b_c8350%7Cglycoside.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18494%7Cdiacylglycerol.for.36778-38537.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.36778-38537.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.36778-38537.Ar_EST_120301b_c18494%7Cdiacylglycerol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5917%7Cglycosyl.for.40075-41960.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.40075-41960.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.40075-41960.Ar_EST_120301b_rep_c5917%7Cglycosyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4688%7Cglycosyl.for.39920-41840.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.39920-41840.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.39920-41840.Ar_EST_120301b_rep_c4688%7Cglycosyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8876%7Cprotein.for.42940-44630.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.42940-44630.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.42940-44630.Ar_EST_120301b_c8876%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12607%7Ccarboxypeptidase.for.44948-46147.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.44948-46147.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.44948-46147.Ar_EST_120301b_c12607%7Ccarboxypeptidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15694%7Cfy863259.for.47931-49182.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.47931-49182.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.47931-49182.Ar_EST_120301b_c15694%7Cfy863259.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6729%7Chypothetical.for.48968-50536.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.48968-50536.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.48968-50536.Ar_EST_120301b_rep_c6729%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6105%7Cmusra09tf.for.49359-50604.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.49359-50604.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.49359-50604.Ar_EST_120301b_rep_c6105%7Cmusra09tf.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig360%7Cendonuclease.for.48954-50714.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.48954-50714.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.48954-50714.120301b_Contig360%7Cendonuclease.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1875%7Cregulator.for.50892-52717.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.50892-52717.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.50892-52717.Ar_EST_120301b_c1875%7Cregulator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8971%7Cgpi-anchored.for.52653-54255.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.52653-54255.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.52653-54255.Ar_EST_120301b_c8971%7Cgpi-anchored.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1204%7Cantigenic.for.54431-55800.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.54431-55800.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.54431-55800.120301b_Contig1204%7Cantigenic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2993%7Cala-interacting.for.55690-57429.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.55690-57429.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.55690-57429.Ar_EST_120301b_c2993%7Cala-interacting.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17158%7CCCFBM4D02.for.57563-58850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.57563-58850.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.57563-58850.Ar_EST_120301b_c17158%7CCCFBM4D02.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3003%7Cserine.for.61670-63495.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.61670-63495.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.61670-63495.Ar_EST_120301b_c3003%7Cserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8793%7Ckinase.for.62456-63890.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.62456-63890.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.62456-63890.Ar_EST_120301b_c8793%7Ckinase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c181%7Cmannose-p-dolichol.for.70397-71993.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.70397-71993.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.70397-71993.Ar_EST_120301b_c181%7Cmannose-p-dolichol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17865%7Cmannose-p-dolichol.for.70718-71966.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.70718-71966.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.70718-71966.Ar_EST_120301b_c17865%7Cmannose-p-dolichol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1474%7Cregulator.for.77795-79191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.77795-79191.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.77795-79191.Ar_EST_120301b_c1474%7Cregulator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16328%7Cphytanoyl-.for.80693-82050.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.80693-82050.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.80693-82050.Ar_EST_120301b_c16328%7Cphytanoyl-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14940%7C---NA---.for.93035-94410.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.93035-94410.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.93035-94410.Ar_EST_120301b_c14940%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3508%7Crhogef.for.91581-93280.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.91581-93280.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.91581-93280.Ar_EST_120301b_c3508%7Crhogef.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1078%7Cpleckstrin.for.91910-94036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.91910-94036.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.91910-94036.Ar_EST_120301b_c1078%7Cpleckstrin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12304%7Ccls_c.for.93028-94066.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.93028-94066.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.93028-94066.Ar_EST_120301b_c12304%7Ccls_c.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13759%7Cfoaa-.for.104296-105162.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.104296-105162.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.104296-105162.Ar_EST_120301b_c13759%7Cfoaa-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9555%7Cubiquitin.for.104630-106307.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.104630-106307.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.104630-106307.Ar_EST_120301b_c9555%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19079%7Cubiquitin.for.107333-108411.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.107333-108411.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.107333-108411.Ar_EST_120301b_c19079%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8071%7Cubiquitin.for.106552-108586.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.106552-108586.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.106552-108586.Ar_EST_120301b_c8071%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9823%7CCF0007142.for.116219-117319.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.116219-117319.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.116219-117319.Ar_EST_120301b_c9823%7CCF0007142.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17572%7C---NA---.for.117192-118387.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.117192-118387.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.117192-118387.Ar_EST_120301b_c17572%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20039%7C60s.for.118952-120109.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120109.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120109.Ar_EST_120301b_rep_c20039%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9805%7C0246832.for.119506-120448.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119506-120448.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119506-120448.Ar_EST_120301b_rep_c9805%7C0246832.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11483%7Cisoform.for.119403-120493.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119403-120493.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119403-120493.Ar_EST_120301b_rep_c11483%7Cisoform.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5984%7Cribosomal.for.118952-120346.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120346.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120346.Ar_EST_120301b_rep_c5984%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5385%7Cribosomal.for.118966-120352.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118966-120352.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118966-120352.Ar_EST_120301b_rep_c5385%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20112%7C60s.for.119424-120420.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119424-120420.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119424-120420.Ar_EST_120301b_rep_c20112%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1975%7Cribosomal.for.118868-120525.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118868-120525.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118868-120525.Ar_EST_120301b_c1975%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20290%7Cribosomal.for.118952-120343.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120343.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120343.Ar_EST_120301b_rep_c20290%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20093%7C60s.for.118952-120295.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120295.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120295.Ar_EST_120301b_rep_c20093%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5245%7Cribosomal.for.118952-120380.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120380.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120380.Ar_EST_120301b_rep_c5245%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19529%7Cppe00006243.for.119535-120422.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119535-120422.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119535-120422.Ar_EST_120301b_rep_c19529%7Cppe00006243.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig972%7Ctetratricopeptide.for.119793-121397.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119793-121397.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119793-121397.120301b_Contig972%7Ctetratricopeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15821%7Chypothetical.for.125074-126487.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.125074-126487.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.125074-126487.Ar_EST_120301b_c15821%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7993%7Chypothetical.for.128465-130544.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.128465-130544.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.128465-130544.Ar_EST_120301b_c7993%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6167%7Crho.for.130038-131215.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.130038-131215.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.130038-131215.Ar_EST_120301b_rep_c6167%7Crho.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4353%7Cras-related.for.129829-131313.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.129829-131313.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.129829-131313.Ar_EST_120301b_rep_c4353%7Cras-related.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:41 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 ...processing 0 of 2 ...processing 1 of 2 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:37 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:23 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:36 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:52 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:42 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:32 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:43 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:44 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:26 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095853%7Cgb%7CEFC49482%2E1%7C.for.12016-13166.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.12016-13166.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.12016-13166.gi%7C284095853%7Cgb%7CEFC49482%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087172%7Cgb%7CEFC40843%2E1%7C.for.16022-17814.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.16022-17814.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.16022-17814.gi%7C284087172%7Cgb%7CEFC40843%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095198%7Cgb%7CEFC48829%2E1%7C.for.30355-32672.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.30355-32672.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.30355-32672.gi%7C284095198%7Cgb%7CEFC48829%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096098%7Cgb%7CEFC49727%2E1%7C.for.44261-46268.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.44261-46268.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.44261-46268.gi%7C284096098%7Cgb%7CEFC49727%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094374%7Cgb%7CEFC48008%2E1%7C.for.55695-57505.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.55695-57505.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.55695-57505.gi%7C284094374%7Cgb%7CEFC48008%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082829%7Cgb%7CEFC36540%2E1%7C.for.59265-61230.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.59265-61230.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.59265-61230.gi%7C284082829%7Cgb%7CEFC36540%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095559%7Cgb%7CEFC49189%2E1%7C.for.59268-60843.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.59268-60843.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.59268-60843.gi%7C284095559%7Cgb%7CEFC49189%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096101%7Cgb%7CEFC49730%2E1%7C.for.67324-68455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.67324-68455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.67324-68455.gi%7C284096101%7Cgb%7CEFC49730%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090298%7Cgb%7CEFC43950%2E1%7C.for.69162-70660.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69162-70660.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69162-70660.gi%7C284090298%7Cgb%7CEFC43950%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096572%7Cgb%7CEFC50200%2E1%7C.for.69582-70540.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69582-70540.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69582-70540.gi%7C284096572%7Cgb%7CEFC50200%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084962%7Cgb%7CEFC38649%2E1%7C.for.69174-70630.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69174-70630.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69174-70630.gi%7C284084962%7Cgb%7CEFC38649%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081791%7Cgb%7CEFC35658%2E1%7C.for.69162-70354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69162-70354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69162-70354.gi%7C284081791%7Cgb%7CEFC35658%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096459%7Cgb%7CEFC50087%2E1%7C.for.69168-70963.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69168-70963.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69168-70963.gi%7C284096459%7Cgb%7CEFC50087%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093690%7Cgb%7CEFC47327%2E1%7C.for.69654-70660.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69654-70660.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69654-70660.gi%7C284093690%7Cgb%7CEFC47327%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095073%7Cgb%7CEFC48705%2E1%7C.for.69159-70960.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69159-70960.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69159-70960.gi%7C284095073%7Cgb%7CEFC48705%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083745%7Cgb%7CEFC37445%2E1%7C.for.69168-70654.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69168-70654.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69168-70654.gi%7C284083745%7Cgb%7CEFC37445%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097133%7Cgb%7CEFC50760%2E1%7C.for.70362-71972.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.70362-71972.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.70362-71972.gi%7C284097133%7Cgb%7CEFC50760%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095573%7Cgb%7CEFC49203%2E1%7C.for.75345-76793.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75345-76793.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75345-76793.gi%7C284095573%7Cgb%7CEFC49203%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085812%7Cgb%7CEFC39493%2E1%7C.for.75339-76796.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76796.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76796.gi%7C284085812%7Cgb%7CEFC39493%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092862%7Cgb%7CEFC46502%2E1%7C.for.75402-76799.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75402-76799.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75402-76799.gi%7C284092862%7Cgb%7CEFC46502%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090460%7Cgb%7CEFC44112%2E1%7C.for.75339-76805.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76805.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76805.gi%7C284090460%7Cgb%7CEFC44112%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089636%7Cgb%7CEFC43292%2E1%7C.for.75405-76805.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75405-76805.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75405-76805.gi%7C284089636%7Cgb%7CEFC43292%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090872%7Cgb%7CEFC44522%2E1%7C.for.75342-76799.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75342-76799.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75342-76799.gi%7C284090872%7Cgb%7CEFC44522%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081627%7Cgb%7CEFC35562%2E1%7C.for.75684-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75684-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75684-76808.gi%7C284081627%7Cgb%7CEFC35562%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093011%7Cgb%7CEFC46651%2E1%7C.for.75405-76805.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75405-76805.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75405-76805.gi%7C284093011%7Cgb%7CEFC46651%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091565%7Cgb%7CEFC45211%2E1%7C.for.75429-76796.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75429-76796.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75429-76796.gi%7C284091565%7Cgb%7CEFC45211%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085749%7Cgb%7CEFC39431%2E1%7C.for.75537-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75537-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75537-76808.gi%7C284085749%7Cgb%7CEFC39431%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090598%7Cgb%7CEFC44249%2E1%7C.for.75339-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76808.gi%7C284090598%7Cgb%7CEFC44249%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095689%7Cgb%7CEFC49319%2E1%7C.for.75414-76817.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75414-76817.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75414-76817.gi%7C284095689%7Cgb%7CEFC49319%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088013%7Cgb%7CEFC41679%2E1%7C.for.75339-76799.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76799.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76799.gi%7C284088013%7Cgb%7CEFC41679%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092337%7Cgb%7CEFC45979%2E1%7C.for.75402-76799.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75402-76799.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75402-76799.gi%7C284092337%7Cgb%7CEFC45979%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093381%7Cgb%7CEFC47019%2E1%7C.for.75408-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75408-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75408-76808.gi%7C284093381%7Cgb%7CEFC47019%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087750%7Cgb%7CEFC41418%2E1%7C.for.75339-76796.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76796.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76796.gi%7C284087750%7Cgb%7CEFC41418%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097171%7Cgb%7CEFC50798%2E1%7C.for.75360-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75360-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75360-76808.gi%7C284097171%7Cgb%7CEFC50798%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084253%7Cgb%7CEFC37948%2E1%7C.for.75390-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75390-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75390-76808.gi%7C284084253%7Cgb%7CEFC37948%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096980%7Cgb%7CEFC50607%2E1%7C.for.75396-76726.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75396-76726.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75396-76726.gi%7C284096980%7Cgb%7CEFC50607%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082060%7Cgb%7CEFC35846%2E1%7C.for.75588-76805.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75588-76805.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75588-76805.gi%7C284082060%7Cgb%7CEFC35846%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089921%7Cgb%7CEFC43576%2E1%7C.for.75366-76534.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75366-76534.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75366-76534.gi%7C284089921%7Cgb%7CEFC43576%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087888%7Cgb%7CEFC41555%2E1%7C.for.75339-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76808.gi%7C284087888%7Cgb%7CEFC41555%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090604%7Cgb%7CEFC44255%2E1%7C.for.75381-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75381-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75381-76808.gi%7C284090604%7Cgb%7CEFC44255%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093718%7Cgb%7CEFC47355%2E1%7C.for.75402-76802.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75402-76802.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75402-76802.gi%7C284093718%7Cgb%7CEFC47355%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081289%7Cgb%7CEFC35375%2E1%7C.for.75366-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75366-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75366-76808.gi%7C284081289%7Cgb%7CEFC35375%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084867%7Cgb%7CEFC38555%2E1%7C.for.75381-76805.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75381-76805.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75381-76805.gi%7C284084867%7Cgb%7CEFC38555%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092603%7Cgb%7CEFC46244%2E1%7C.for.75390-76805.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75390-76805.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75390-76805.gi%7C284092603%7Cgb%7CEFC46244%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094751%7Cgb%7CEFC48384%2E1%7C.for.75345-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75345-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75345-76808.gi%7C284094751%7Cgb%7CEFC48384%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.82526-86036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86036.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86036.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.for.83467-86042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83467-86042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83467-86042.gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095844%7Cgb%7CEFC49473%2E1%7C.for.82526-86051.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86051.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86051.gi%7C284095844%7Cgb%7CEFC49473%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.for.82478-86054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82478-86054.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82478-86054.gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.for.82526-86054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86054.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86054.gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.for.83596-86024.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83596-86024.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83596-86024.gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085992%7Cgb%7CEFC39672%2E1%7C.for.82526-86078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86078.gi%7C284085992%7Cgb%7CEFC39672%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095843%7Cgb%7CEFC49472%2E1%7C.for.83551-86042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83551-86042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83551-86042.gi%7C284095843%7Cgb%7CEFC49472%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.for.83554-86039.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86039.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86039.gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.for.83617-86012.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83617-86012.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83617-86012.gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085851%7Cgb%7CEFC39532%2E1%7C.for.83590-87575.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-87575.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-87575.gi%7C284085851%7Cgb%7CEFC39532%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088147%7Cgb%7CEFC41812%2E1%7C.for.83623-86063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86063.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86063.gi%7C284088147%7Cgb%7CEFC41812%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.for.83623-85985.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-85985.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-85985.gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.for.83554-86027.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86027.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86027.gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.for.82526-87245.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-87245.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-87245.gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084257%7Cgb%7CEFC37951%2E1%7C.for.82526-86387.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86387.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86387.gi%7C284084257%7Cgb%7CEFC37951%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.for.82526-86054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86054.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86054.gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090138%7Cgb%7CEFC43791%2E1%7C.for.82478-86126.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82478-86126.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82478-86126.gi%7C284090138%7Cgb%7CEFC43791%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.for.83596-86042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83596-86042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83596-86042.gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.for.83551-86036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83551-86036.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83551-86036.gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.for.83551-87245.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83551-87245.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83551-87245.gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082687%7Cgb%7CEFC36400%2E1%7C.for.82517-86612.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82517-86612.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82517-86612.gi%7C284082687%7Cgb%7CEFC36400%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086383%7Cgb%7CEFC40060%2E1%7C.for.83623-86051.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86051.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86051.gi%7C284086383%7Cgb%7CEFC40060%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.for.83566-86015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83566-86015.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83566-86015.gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097003%7Cgb%7CEFC50630%2E1%7C.for.83554-86042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86042.gi%7C284097003%7Cgb%7CEFC50630%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.for.83554-86039.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86039.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86039.gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.for.83590-86015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-86015.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-86015.gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.for.82517-86054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82517-86054.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82517-86054.gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082747%7Cgb%7CEFC36459%2E1%7C.for.83590-86033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-86033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-86033.gi%7C284082747%7Cgb%7CEFC36459%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.for.82526-87245.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-87245.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-87245.gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.for.82523-86054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82523-86054.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82523-86054.gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092908%7Cgb%7CEFC46548%2E1%7C.for.82526-86030.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86030.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86030.gi%7C284092908%7Cgb%7CEFC46548%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.for.82478-86039.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82478-86039.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82478-86039.gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.for.82526-86042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86042.gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.for.82526-86060.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86060.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86060.gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094023%7Cgb%7CEFC47658%2E1%7C.for.82514-86093.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82514-86093.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82514-86093.gi%7C284094023%7Cgb%7CEFC47658%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082395%7Cgb%7CEFC36118%2E1%7C.for.82523-86060.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82523-86060.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82523-86060.gi%7C284082395%7Cgb%7CEFC36118%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096530%7Cgb%7CEFC50158%2E1%7C.for.83623-86396.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86396.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86396.gi%7C284096530%7Cgb%7CEFC50158%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.for.83623-86042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86042.gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.for.83659-86015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83659-86015.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83659-86015.gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090154%7Cgb%7CEFC43807%2E1%7C.for.82526-86081.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86081.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86081.gi%7C284090154%7Cgb%7CEFC43807%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083343%7Cgb%7CEFC37047%2E1%7C.for.82517-86024.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82517-86024.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82517-86024.gi%7C284083343%7Cgb%7CEFC37047%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086531%7Cgb%7CEFC40207%2E1%7C.for.83572-86042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83572-86042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83572-86042.gi%7C284086531%7Cgb%7CEFC40207%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.for.83554-86018.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86018.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86018.gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090243%7Cgb%7CEFC43896%2E1%7C.for.82526-86042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86042.gi%7C284090243%7Cgb%7CEFC43896%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.for.82526-86492.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86492.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86492.gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.for.82517-87083.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82517-87083.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82517-87083.gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092203%7Cgb%7CEFC45846%2E1%7C.for.82526-86054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86054.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86054.gi%7C284092203%7Cgb%7CEFC45846%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.for.83593-86075.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83593-86075.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83593-86075.gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.for.83596-86102.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83596-86102.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83596-86102.gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088463%7Cgb%7CEFC42126%2E1%7C.for.83623-86024.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86024.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86024.gi%7C284088463%7Cgb%7CEFC42126%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086579%7Cgb%7CEFC40255%2E1%7C.for.83554-86042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86042.gi%7C284086579%7Cgb%7CEFC40255%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096176%7Cgb%7CEFC49805%2E1%7C.for.82526-86360.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86360.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86360.gi%7C284096176%7Cgb%7CEFC49805%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.for.83590-86036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-86036.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-86036.gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080837%7Cgb%7CEFC35205%2E1%7C.for.83641-86126.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83641-86126.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83641-86126.gi%7C284080837%7Cgb%7CEFC35205%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087676%7Cgb%7CEFC41344%2E1%7C.for.82523-86432.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82523-86432.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82523-86432.gi%7C284087676%7Cgb%7CEFC41344%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087857%7Cgb%7CEFC41524%2E1%7C.for.82526-86021.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86021.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86021.gi%7C284087857%7Cgb%7CEFC41524%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080808%7Cgb%7CEFC35194%2E1%7C.for.83599-86012.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83599-86012.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83599-86012.gi%7C284080808%7Cgb%7CEFC35194%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.for.83590-85994.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-85994.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-85994.gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095310%7Cgb%7CEFC48941%2E1%7C.for.101030-102665.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.101030-102665.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.101030-102665.gi%7C284095310%7Cgb%7CEFC48941%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084277%7Cgb%7CEFC37971%2E1%7C.for.104855-109073.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.104855-109073.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.104855-109073.gi%7C284084277%7Cgb%7CEFC37971%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.for.109610-110919.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109610-110919.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109610-110919.gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.for.109649-110919.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109649-110919.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109649-110919.gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094669%7Cgb%7CEFC48302%2E1%7C.for.109652-110919.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109652-110919.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109652-110919.gi%7C284094669%7Cgb%7CEFC48302%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.for.109634-110913.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109634-110913.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109634-110913.gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.for.109628-110919.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109628-110919.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109628-110919.gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.for.109610-111339.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109610-111339.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109610-111339.gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.for.109616-110967.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109616-110967.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109616-110967.gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.for.109619-111045.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109619-111045.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109619-111045.gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097002%7Cgb%7CEFC50629%2E1%7C.for.109652-110967.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109652-110967.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109652-110967.gi%7C284097002%7Cgb%7CEFC50629%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.for.109637-110937.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109637-110937.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109637-110937.gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.for.109331-110925.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109331-110925.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109331-110925.gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092908%7Cgb%7CEFC46548%2E1%7C.for.109604-111387.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109604-111387.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109604-111387.gi%7C284092908%7Cgb%7CEFC46548%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.for.109616-110988.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109616-110988.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109616-110988.gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.for.109958-110916.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109958-110916.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109958-110916.gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.for.109610-110916.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109610-110916.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109610-110916.gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.for.109541-110931.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109541-110931.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109541-110931.gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.for.109619-114930.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109619-114930.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109619-114930.gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088433%7Cgb%7CEFC42096%2E1%7C.for.109649-111183.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109649-111183.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109649-111183.gi%7C284088433%7Cgb%7CEFC42096%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096508%7Cgb%7CEFC50136%2E1%7C.for.109643-114861.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109643-114861.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109643-114861.gi%7C284096508%7Cgb%7CEFC50136%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086579%7Cgb%7CEFC40255%2E1%7C.for.109637-114897.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109637-114897.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109637-114897.gi%7C284086579%7Cgb%7CEFC40255%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085441%7Cgb%7CEFC39125%2E1%7C.for.119173-120386.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119173-120386.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119173-120386.gi%7C284085441%7Cgb%7CEFC39125%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090460%7Cgb%7CEFC44112%2E1%7C.for.129852-131111.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.129852-131111.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.129852-131111.gi%7C284090460%7Cgb%7CEFC44112%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091118%7Cgb%7CEFC44766%2E1%7C.for.129888-130990.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.129888-130990.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.129888-130990.gi%7C284091118%7Cgb%7CEFC44766%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 25 ...processing 1 of 25 ...processing 2 of 25 ...processing 3 of 25 ...processing 4 of 25 ...processing 5 of 25 ...processing 6 of 25 ...processing 7 of 25 ...processing 8 of 25 ...processing 9 of 25 ...processing 10 of 25 ...processing 11 of 25 ...processing 12 of 25 ...processing 13 of 25 ...processing 14 of 25 ...processing 15 of 25 ...processing 16 of 25 ...processing 17 of 25 ...processing 18 of 25 ...processing 19 of 25 ...processing 20 of 25 ...processing 21 of 25 ...processing 22 of 25 ...processing 23 of 25 ...processing 24 of 25 total clusters:14 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 21 ...processing 1 of 21 ...processing 2 of 21 ...processing 3 of 21 ...processing 4 of 21 ...processing 5 of 21 ...processing 6 of 21 ...processing 7 of 21 ...processing 8 of 21 ...processing 9 of 21 ...processing 10 of 21 ...processing 11 of 21 ...processing 12 of 21 ...processing 13 of 21 ...processing 14 of 21 ...processing 15 of 21 ...processing 16 of 21 ...processing 17 of 21 ...processing 18 of 21 ...processing 19 of 21 ...processing 20 of 21 ...trimming the rest total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 22 ...processing 1 of 22 ...processing 2 of 22 ...processing 3 of 22 ...processing 4 of 22 ...processing 5 of 22 ...processing 6 of 22 ...processing 7 of 22 ...processing 8 of 22 ...processing 9 of 22 ...processing 10 of 22 ...processing 11 of 22 ...processing 12 of 22 ...processing 13 of 22 ...processing 14 of 22 ...processing 15 of 22 ...processing 16 of 22 ...processing 17 of 22 ...processing 18 of 22 ...processing 19 of 22 ...processing 20 of 22 ...processing 21 of 22 total clusters:12 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 20 ...processing 1 of 20 ...processing 2 of 20 ...processing 3 of 20 ...processing 4 of 20 ...processing 5 of 20 ...processing 6 of 20 ...processing 7 of 20 ...processing 8 of 20 ...processing 9 of 20 ...processing 10 of 20 ...processing 11 of 20 ...processing 12 of 20 ...processing 13 of 20 ...processing 14 of 20 ...processing 15 of 20 ...processing 16 of 20 ...processing 17 of 20 ...processing 18 of 20 ...processing 19 of 20 ...trimming the rest ...processing 0 of 10 ...processing 1 of 10 ...processing 2 of 10 ...processing 3 of 10 ...processing 4 of 10 ...processing 5 of 10 ...processing 6 of 10 ...processing 7 of 10 ...processing 8 of 10 ...processing 9 of 10 total clusters:23 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.0-1068.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.0-1068.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.0-1068.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.14508-15775.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.14508-15775.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.14508-15775.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.26842-28089.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.26842-28089.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.26842-28089.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.30554-32472.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.30554-32472.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.30554-32472.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.36905-38337.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.36905-38337.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.36905-38337.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.40119-41760.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.40119-41760.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.40119-41760.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.49167-50404.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.49167-50404.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.49167-50404.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.51091-52517.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.51091-52517.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.51091-52517.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.52826-55600.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.52826-55600.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.52826-55600.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.61869-63690.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.61869-63690.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.61869-63690.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.77994-78991.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.77994-78991.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.77994-78991.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.80892-81850.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.80892-81850.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.80892-81850.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.82716-86883.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.82716-86883.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.82716-86883.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.91757-94210.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.91757-94210.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.91757-94210.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.101229-102851.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.101229-102851.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.101229-102851.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.104829-108873.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.104829-108873.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.104829-108873.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.109809-114661.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.109809-114661.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.109809-114661.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.116418-117119.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.116418-117119.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.116418-117119.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.119146-121197.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.119146-121197.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.119146-121197.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.125273-126287.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.125273-126287.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.125273-126287.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.1025-2898.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.1025-2898.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.1025-2898.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.7134-8687.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.7134-8687.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.7134-8687.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.10846-11729.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.10846-11729.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.10846-11729.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.12608-14641.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.12608-14641.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.12608-14641.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.16212-17785.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.16212-17785.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.16212-17785.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.19908-23518.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.19908-23518.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.19908-23518.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.28613-30052.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.28613-30052.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.28613-30052.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.43139-44430.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.43139-44430.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.43139-44430.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.44460-46068.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.44460-46068.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.44460-46068.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.55889-57367.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.55889-57367.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.55889-57367.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.57762-58650.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.57762-58650.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.57762-58650.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.67523-68255.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.67523-68255.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.67523-68255.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.69358-71793.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.69358-71793.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.69358-71793.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.75544-76608.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.75544-76608.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.75544-76608.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.117391-118195.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.117391-118195.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.117391-118195.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.128664-131113.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.128664-131113.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.128664-131113.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C39 Length: 100272 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:4 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:1 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:3 current j:0 j_size:3 current j:1 j_size:3 current j:2 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C39.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C39.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:13 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13753%7Czinc.for.1-924.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.1-924.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.1-924.Ar_EST_120301b_c13753%7Czinc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19066%7Chypothetical.for.789-2082.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.789-2082.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.789-2082.Ar_EST_120301b_c19066%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig218%7Cnexus.for.334-2773.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.334-2773.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.334-2773.120301b_Contig218%7Cnexus.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14313%7C---NA---.for.2604-4481.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.2604-4481.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.2604-4481.Ar_EST_120301b_c14313%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19310%7C1351925.for.2914-4175.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.2914-4175.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.2914-4175.Ar_EST_120301b_c19310%7C1351925.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12834%7C1351925.for.2793-4091.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.2793-4091.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.2793-4091.Ar_EST_120301b_c12834%7C1351925.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16703%7C454.for.2095-3484.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.2095-3484.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.2095-3484.Ar_EST_120301b_c16703%7C454.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18347%7Cribosomal.for.5241-6295.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.5241-6295.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.5241-6295.Ar_EST_120301b_rep_c18347%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12088%7Cnucleosome.for.4895-6049.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.4895-6049.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.4895-6049.Ar_EST_120301b_rep_c12088%7Cnucleosome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18245%7Ceukaryotic.for.4895-5920.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.4895-5920.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.4895-5920.Ar_EST_120301b_rep_c18245%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3465%7Cexonuclease.for.6573-8065.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.6573-8065.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.6573-8065.Ar_EST_120301b_c3465%7Cexonuclease.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4109%7Cactin.for.8275-9534.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8275-9534.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8275-9534.Ar_EST_120301b_rep_c4109%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5621%7Cactin.for.8469-9548.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8469-9548.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8469-9548.Ar_EST_120301b_rep_c5621%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19797%7Cactin.for.8462-9544.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8462-9544.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8462-9544.Ar_EST_120301b_rep_c19797%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6543%7Cactin.for.8276-9534.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8276-9534.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8276-9534.Ar_EST_120301b_rep_c6543%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17737%7Cactin.for.8403-9496.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8403-9496.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8403-9496.Ar_EST_120301b_rep_c17737%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8147%7Ccofilin.for.8464-9533.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8464-9533.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8464-9533.Ar_EST_120301b_rep_c8147%7Ccofilin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20113%7Cactin-depolymerizing.for.8505-9548.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8505-9548.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8505-9548.Ar_EST_120301b_rep_c20113%7Cactin-depolymerizing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7396%7Cuncharacterized.for.9271-10874.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.9271-10874.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.9271-10874.Ar_EST_120301b_rep_c7396%7Cuncharacterized.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12055%7Ccg18418-pa.for.10263-11531.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.10263-11531.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.10263-11531.Ar_EST_120301b_c12055%7Ccg18418-pa.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4634%7Cprotein.for.11895-13364.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.11895-13364.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.11895-13364.Ar_EST_120301b_rep_c4634%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1801%7Ctumor.for.11297-12731.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.11297-12731.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.11297-12731.Ar_EST_120301b_c1801%7Ctumor.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13099%7Ctumor.for.11414-12710.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.11414-12710.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.11414-12710.Ar_EST_120301b_c13099%7Ctumor.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13018%7Ctumor.for.11957-13023.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.11957-13023.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.11957-13023.Ar_EST_120301b_rep_c13018%7Ctumor.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10348%7Cnb405-g03.for.14482-15853.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.14482-15853.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.14482-15853.Ar_EST_120301b_c10348%7Cnb405-g03.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8849%7Carp2.for.20682-21692.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.20682-21692.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.20682-21692.Ar_EST_120301b_c8849%7Carp2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4195%7Cactin.for.20151-21811.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.20151-21811.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.20151-21811.Ar_EST_120301b_rep_c4195%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12311%7Cc.for.29373-30667.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.29373-30667.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.29373-30667.Ar_EST_120301b_c12311%7Cc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12329%7Ctyrosine.for.32236-33500.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.32236-33500.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.32236-33500.Ar_EST_120301b_c12329%7Ctyrosine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7147%7Cprotein.for.34104-36543.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.34104-36543.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.34104-36543.Ar_EST_120301b_rep_c7147%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13197%7Cprotein.for.33828-35252.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33828-35252.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33828-35252.Ar_EST_120301b_rep_c13197%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12720%7Cprotein.for.35786-37179.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.35786-37179.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.35786-37179.Ar_EST_120301b_c12720%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16530%7Cprotein.for.37347-38707.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.37347-38707.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.37347-38707.Ar_EST_120301b_c16530%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6488%7Cperoxisomal.for.38875-40593.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.38875-40593.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.38875-40593.Ar_EST_120301b_rep_c6488%7Cperoxisomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3260%7Camp-dependent.for.38868-40952.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.38868-40952.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.38868-40952.Ar_EST_120301b_c3260%7Camp-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3131%7Ccarboxypeptidase.for.40763-42063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.40763-42063.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.40763-42063.Ar_EST_120301b_c3131%7Ccarboxypeptidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2100%7Ccarboxypeptidase.for.41304-43144.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.41304-43144.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.41304-43144.Ar_EST_120301b_c2100%7Ccarboxypeptidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c98%7Ckinesin.for.44885-47294.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.44885-47294.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.44885-47294.Ar_EST_120301b_c98%7Ckinesin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18997%7Cchromosome.for.46355-47842.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.46355-47842.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.46355-47842.Ar_EST_120301b_c18997%7Cchromosome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3674%7Cviral.for.47108-49237.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.47108-49237.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.47108-49237.Ar_EST_120301b_c3674%7Cviral.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15127%7Cankyrin.for.50570-51694.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.50570-51694.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.50570-51694.Ar_EST_120301b_c15127%7Cankyrin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c40%7C2-oxoglutarate.for.51287-55022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.51287-55022.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.51287-55022.Ar_EST_120301b_c40%7C2-oxoglutarate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15498%7Cheat.for.55491-57055.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.55491-57055.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.55491-57055.Ar_EST_120301b_c15498%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18376%7Cheat.for.56061-57285.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.56061-57285.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.56061-57285.Ar_EST_120301b_rep_c18376%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10445%7Cacid.for.57635-59202.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.57635-59202.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.57635-59202.Ar_EST_120301b_c10445%7Cacid.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6230%7Cproteasome.for.67388-68889.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.67388-68889.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.67388-68889.Ar_EST_120301b_rep_c6230%7Cproteasome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6671%7Cproteasome.for.67396-68889.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.67396-68889.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.67396-68889.Ar_EST_120301b_rep_c6671%7Cproteasome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18287%7Cvirginia_state_96561_2_lrc14307.for.70151-71575.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.70151-71575.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.70151-71575.Ar_EST_120301b_c18287%7Cvirginia_state_96561_2_lrc14307.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c484%7Cring.for.75125-76585.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.75125-76585.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.75125-76585.Ar_EST_120301b_c484%7Cring.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c447%7Cring.for.75210-76875.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.75210-76875.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.75210-76875.Ar_EST_120301b_c447%7Cring.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9829%7Cap-3.for.76139-77892.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.76139-77892.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.76139-77892.Ar_EST_120301b_c9829%7Cap-3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3233%7Cdelta.for.77329-79597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.77329-79597.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.77329-79597.Ar_EST_120301b_c3233%7Cdelta.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11437%7Cap3d1.for.78861-80064.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.78861-80064.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.78861-80064.Ar_EST_120301b_c11437%7Cap3d1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig730%7Csucrose.for.80010-82314.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.80010-82314.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.80010-82314.120301b_Contig730%7Csucrose.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2139%7Cppaa.for.81749-83046.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.81749-83046.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.81749-83046.Ar_EST_120301b_c2139%7Cppaa.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12678%7Cf-box_lrr-repeat.for.82248-83524.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.82248-83524.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.82248-83524.Ar_EST_120301b_c12678%7Cf-box_lrr-repeat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17905%7Chypothetical.for.87957-89135.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.87957-89135.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.87957-89135.Ar_EST_120301b_rep_c17905%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5855%7Cagencourt_50136586.for.88105-89314.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.88105-89314.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.88105-89314.Ar_EST_120301b_rep_c5855%7Cagencourt_50136586.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18715%7Cest29560.for.88099-89406.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.88099-89406.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.88099-89406.Ar_EST_120301b_rep_c18715%7Cest29560.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6749%7Cpgsp0011j20.for.88034-89440.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.88034-89440.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.88034-89440.Ar_EST_120301b_rep_c6749%7Cpgsp0011j20.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4535%7Cnucleosome.for.87965-89314.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.87965-89314.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.87965-89314.Ar_EST_120301b_rep_c4535%7Cnucleosome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8267%7C60s.for.88442-89564.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.88442-89564.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.88442-89564.Ar_EST_120301b_rep_c8267%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1246%7Cucrcp01_052_g05_t3.for.87968-89140.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.87968-89140.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.87968-89140.Ar_EST_120301b_c1246%7Cucrcp01_052_g05_t3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19666%7Cpredicted.for.89138-90434.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89138-90434.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89138-90434.Ar_EST_120301b_rep_c19666%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6620%7Cprotein.for.89020-90455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89020-90455.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89020-90455.Ar_EST_120301b_rep_c6620%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10160%7Cubiquitin.for.94605-95858.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.94605-95858.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.94605-95858.Ar_EST_120301b_c10160%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig284%7Cubiquitin.for.93053-95923.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.93053-95923.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.93053-95923.120301b_Contig284%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2103%7Cubiquitin.for.92176-94058.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.92176-94058.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.92176-94058.Ar_EST_120301b_c2103%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3295%7Chistone.for.95180-96441.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.95180-96441.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.95180-96441.Ar_EST_120301b_c3295%7Chistone.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c49%7Cadenylyl.for.96722-98599.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.96722-98599.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.96722-98599.Ar_EST_120301b_c49%7Cadenylyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5021%7Cadenylyl.for.97187-98435.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.97187-98435.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.97187-98435.Ar_EST_120301b_rep_c5021%7Cadenylyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig169%7Ctrna-dihydrouridine.for.97813-99168.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.97813-99168.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.97813-99168.120301b_Contig169%7Ctrna-dihydrouridine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11871%7Chypothetical.for.99403-100272.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.99403-100272.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.99403-100272.Ar_EST_120301b_c11871%7Chypothetical.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 total clusters:38 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:31 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:39 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:41 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:39 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:32 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:42 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:39 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:47 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:31 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:24 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086942%7Cgb%7CEFC40615%2E1%7C.for.1825-2792.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.1825-2792.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.1825-2792.gi%7C284086942%7Cgb%7CEFC40615%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089546%7Cgb%7CEFC43203%2E1%7C.for.4896-6250.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.4896-6250.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.4896-6250.gi%7C284089546%7Cgb%7CEFC43203%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095488%7Cgb%7CEFC49119%2E1%7C.for.4911-6250.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.4911-6250.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.4911-6250.gi%7C284095488%7Cgb%7CEFC49119%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097237%7Cgb%7CEFC50864%2E1%7C.for.6461-7958.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.6461-7958.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.6461-7958.gi%7C284097237%7Cgb%7CEFC50864%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084860%7Cgb%7CEFC38548%2E1%7C.for.7493-8939.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.7493-8939.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.7493-8939.gi%7C284084860%7Cgb%7CEFC38548%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082861%7Cgb%7CEFC36571%2E1%7C.for.8310-9520.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8310-9520.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8310-9520.gi%7C284082861%7Cgb%7CEFC36571%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093132%7Cgb%7CEFC46771%2E1%7C.for.9183-11023.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.9183-11023.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.9183-11023.gi%7C284093132%7Cgb%7CEFC46771%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089301%7Cgb%7CEFC42959%2E1%7C.for.10478-12039.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.10478-12039.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.10478-12039.gi%7C284089301%7Cgb%7CEFC42959%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095143%7Cgb%7CEFC48775%2E1%7C.for.10805-12048.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.10805-12048.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.10805-12048.gi%7C284095143%7Cgb%7CEFC48775%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093567%7Cgb%7CEFC47204%2E1%7C.for.13538-14646.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.13538-14646.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.13538-14646.gi%7C284093567%7Cgb%7CEFC47204%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083404%7Cgb%7CEFC37108%2E1%7C.for.15972-17740.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.15972-17740.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.15972-17740.gi%7C284083404%7Cgb%7CEFC37108%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088825%7Cgb%7CEFC42486%2E1%7C.for.16011-17746.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.16011-17746.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.16011-17746.gi%7C284088825%7Cgb%7CEFC42486%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084491%7Cgb%7CEFC38183%2E1%7C.for.20282-21918.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.20282-21918.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.20282-21918.gi%7C284084491%7Cgb%7CEFC38183%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083516%7Cgb%7CEFC37218%2E1%7C.for.24892-25899.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.24892-25899.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.24892-25899.gi%7C284083516%7Cgb%7CEFC37218%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083359%7Cgb%7CEFC37063%2E1%7C.for.33859-38447.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33859-38447.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33859-38447.gi%7C284083359%7Cgb%7CEFC37063%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082638%7Cgb%7CEFC36352%2E1%7C.for.33862-38664.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-38664.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-38664.gi%7C284082638%7Cgb%7CEFC36352%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086918%7Cgb%7CEFC40591%2E1%7C.for.33859-38664.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33859-38664.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33859-38664.gi%7C284086918%7Cgb%7CEFC40591%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083579%7Cgb%7CEFC37281%2E1%7C.for.33835-38453.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33835-38453.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33835-38453.gi%7C284083579%7Cgb%7CEFC37281%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096503%7Cgb%7CEFC50131%2E1%7C.for.33874-38615.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33874-38615.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33874-38615.gi%7C284096503%7Cgb%7CEFC50131%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091223%7Cgb%7CEFC44871%2E1%7C.for.33862-38447.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-38447.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-38447.gi%7C284091223%7Cgb%7CEFC44871%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086695%7Cgb%7CEFC40370%2E1%7C.for.33859-38459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33859-38459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33859-38459.gi%7C284086695%7Cgb%7CEFC40370%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093963%7Cgb%7CEFC47599%2E1%7C.for.33880-38616.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33880-38616.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33880-38616.gi%7C284093963%7Cgb%7CEFC47599%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089381%7Cgb%7CEFC43039%2E1%7C.for.33862-37772.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-37772.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-37772.gi%7C284089381%7Cgb%7CEFC43039%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086532%7Cgb%7CEFC40208%2E1%7C.for.33883-38447.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33883-38447.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33883-38447.gi%7C284086532%7Cgb%7CEFC40208%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083434%7Cgb%7CEFC37137%2E1%7C.for.33874-38459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33874-38459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33874-38459.gi%7C284083434%7Cgb%7CEFC37137%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084818%7Cgb%7CEFC38507%2E1%7C.for.33874-38459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33874-38459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33874-38459.gi%7C284084818%7Cgb%7CEFC38507%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092043%7Cgb%7CEFC45687%2E1%7C.for.33862-38357.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-38357.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-38357.gi%7C284092043%7Cgb%7CEFC45687%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083990%7Cgb%7CEFC37687%2E1%7C.for.33868-38453.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33868-38453.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33868-38453.gi%7C284083990%7Cgb%7CEFC37687%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094052%7Cgb%7CEFC47687%2E1%7C.for.33820-38636.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33820-38636.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33820-38636.gi%7C284094052%7Cgb%7CEFC47687%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085363%7Cgb%7CEFC39047%2E1%7C.for.33868-38435.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33868-38435.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33868-38435.gi%7C284085363%7Cgb%7CEFC39047%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086873%7Cgb%7CEFC40547%2E1%7C.for.33880-38607.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33880-38607.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33880-38607.gi%7C284086873%7Cgb%7CEFC40547%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083848%7Cgb%7CEFC37547%2E1%7C.for.33808-37841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33808-37841.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33808-37841.gi%7C284083848%7Cgb%7CEFC37547%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092675%7Cgb%7CEFC46316%2E1%7C.for.33862-38303.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-38303.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-38303.gi%7C284092675%7Cgb%7CEFC46316%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085442%7Cgb%7CEFC39126%2E1%7C.for.33874-38613.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33874-38613.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33874-38613.gi%7C284085442%7Cgb%7CEFC39126%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083453%7Cgb%7CEFC37156%2E1%7C.for.33880-38252.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33880-38252.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33880-38252.gi%7C284083453%7Cgb%7CEFC37156%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085964%7Cgb%7CEFC39644%2E1%7C.for.33820-37556.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33820-37556.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33820-37556.gi%7C284085964%7Cgb%7CEFC39644%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094593%7Cgb%7CEFC48227%2E1%7C.for.38975-41324.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.38975-41324.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.38975-41324.gi%7C284094593%7Cgb%7CEFC48227%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092016%7Cgb%7CEFC45660%2E1%7C.for.40930-43013.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.40930-43013.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.40930-43013.gi%7C284092016%7Cgb%7CEFC45660%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096618%7Cgb%7CEFC50246%2E1%7C.for.41125-42953.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.41125-42953.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.41125-42953.gi%7C284096618%7Cgb%7CEFC50246%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093000%7Cgb%7CEFC46640%2E1%7C.for.49360-50363.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.49360-50363.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.49360-50363.gi%7C284093000%7Cgb%7CEFC46640%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094695%7Cgb%7CEFC48328%2E1%7C.for.51149-54740.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.51149-54740.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.51149-54740.gi%7C284094695%7Cgb%7CEFC48328%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087414%7Cgb%7CEFC41084%2E1%7C.for.51149-54521.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.51149-54521.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.51149-54521.gi%7C284087414%7Cgb%7CEFC41084%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091446%7Cgb%7CEFC45093%2E1%7C.for.54887-57609.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57609.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57609.gi%7C284091446%7Cgb%7CEFC45093%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094819%7Cgb%7CEFC48452%2E1%7C.for.55097-57597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.55097-57597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.55097-57597.gi%7C284094819%7Cgb%7CEFC48452%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084267%7Cgb%7CEFC37961%2E1%7C.for.55241-57603.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.55241-57603.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.55241-57603.gi%7C284084267%7Cgb%7CEFC37961%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092327%7Cgb%7CEFC45969%2E1%7C.for.54986-57609.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54986-57609.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54986-57609.gi%7C284092327%7Cgb%7CEFC45969%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082776%7Cgb%7CEFC36488%2E1%7C.for.54887-57609.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57609.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57609.gi%7C284082776%7Cgb%7CEFC36488%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084526%7Cgb%7CEFC38218%2E1%7C.for.54956-57597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54956-57597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54956-57597.gi%7C284084526%7Cgb%7CEFC38218%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085272%7Cgb%7CEFC38957%2E1%7C.for.54887-57627.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57627.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57627.gi%7C284085272%7Cgb%7CEFC38957%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085240%7Cgb%7CEFC38925%2E1%7C.for.54887-57627.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57627.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57627.gi%7C284085240%7Cgb%7CEFC38925%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085885%7Cgb%7CEFC39565%2E1%7C.for.54887-57627.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57627.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57627.gi%7C284085885%7Cgb%7CEFC39565%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C33694258%7Cgb%7CAAQ24867%2E1%7C.for.54887-57609.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57609.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57609.gi%7C33694258%7Cgb%7CAAQ24867%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089387%7Cgb%7CEFC43045%2E1%7C.for.54887-57609.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57609.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57609.gi%7C284089387%7Cgb%7CEFC43045%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089144%7Cgb%7CEFC42803%2E1%7C.for.59122-61977.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59122-61977.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59122-61977.gi%7C284089144%7Cgb%7CEFC42803%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082068%7Cgb%7CEFC35853%2E1%7C.for.59104-61917.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59104-61917.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59104-61917.gi%7C284082068%7Cgb%7CEFC35853%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084087%7Cgb%7CEFC37783%2E1%7C.for.59086-61917.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59086-61917.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59086-61917.gi%7C284084087%7Cgb%7CEFC37783%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088982%7Cgb%7CEFC42642%2E1%7C.for.59083-61911.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59083-61911.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59083-61911.gi%7C284088982%7Cgb%7CEFC42642%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089876%7Cgb%7CEFC43531%2E1%7C.for.59116-62028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59116-62028.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59116-62028.gi%7C284089876%7Cgb%7CEFC43531%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083134%7Cgb%7CEFC36841%2E1%7C.for.59113-61911.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59113-61911.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59113-61911.gi%7C284083134%7Cgb%7CEFC36841%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093774%7Cgb%7CEFC47410%2E1%7C.for.59047-62019.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59047-62019.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59047-62019.gi%7C284093774%7Cgb%7CEFC47410%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087481%7Cgb%7CEFC41150%2E1%7C.for.59086-61956.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59086-61956.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59086-61956.gi%7C284087481%7Cgb%7CEFC41150%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086252%7Cgb%7CEFC39930%2E1%7C.for.59212-61932.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59212-61932.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59212-61932.gi%7C284086252%7Cgb%7CEFC39930%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089785%7Cgb%7CEFC43440%2E1%7C.for.59116-62019.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59116-62019.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59116-62019.gi%7C284089785%7Cgb%7CEFC43440%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089211%7Cgb%7CEFC42870%2E1%7C.for.59146-61911.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59146-61911.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59146-61911.gi%7C284089211%7Cgb%7CEFC42870%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084234%7Cgb%7CEFC37929%2E1%7C.for.59059-62019.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59059-62019.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59059-62019.gi%7C284084234%7Cgb%7CEFC37929%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089683%7Cgb%7CEFC43339%2E1%7C.for.59092-61917.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-61917.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-61917.gi%7C284089683%7Cgb%7CEFC43339%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081057%7Cgb%7CEFC35279%2E1%7C.for.59092-62016.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-62016.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-62016.gi%7C284081057%7Cgb%7CEFC35279%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093932%7Cgb%7CEFC47568%2E1%7C.for.59104-61917.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59104-61917.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59104-61917.gi%7C284093932%7Cgb%7CEFC47568%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082314%7Cgb%7CEFC36048%2E1%7C.for.59092-61917.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-61917.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-61917.gi%7C284082314%7Cgb%7CEFC36048%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087499%7Cgb%7CEFC41168%2E1%7C.for.59203-61941.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59203-61941.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59203-61941.gi%7C284087499%7Cgb%7CEFC41168%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094795%7Cgb%7CEFC48428%2E1%7C.for.59119-62010.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59119-62010.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59119-62010.gi%7C284094795%7Cgb%7CEFC48428%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084505%7Cgb%7CEFC38197%2E1%7C.for.59116-61923.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59116-61923.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59116-61923.gi%7C284084505%7Cgb%7CEFC38197%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082806%7Cgb%7CEFC36517%2E1%7C.for.59134-61917.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59134-61917.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59134-61917.gi%7C284082806%7Cgb%7CEFC36517%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084837%7Cgb%7CEFC38526%2E1%7C.for.59092-62028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-62028.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-62028.gi%7C284084837%7Cgb%7CEFC38526%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091590%7Cgb%7CEFC45236%2E1%7C.for.59116-61968.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59116-61968.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59116-61968.gi%7C284091590%7Cgb%7CEFC45236%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087889%7Cgb%7CEFC41556%2E1%7C.for.59095-62019.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59095-62019.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59095-62019.gi%7C284087889%7Cgb%7CEFC41556%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084171%7Cgb%7CEFC37866%2E1%7C.for.59092-61917.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-61917.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-61917.gi%7C284084171%7Cgb%7CEFC37866%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093137%7Cgb%7CEFC46776%2E1%7C.for.59107-62082.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59107-62082.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59107-62082.gi%7C284093137%7Cgb%7CEFC46776%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087305%7Cgb%7CEFC40976%2E1%7C.for.59059-62067.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59059-62067.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59059-62067.gi%7C284087305%7Cgb%7CEFC40976%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092523%7Cgb%7CEFC46165%2E1%7C.for.59086-61962.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59086-61962.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59086-61962.gi%7C284092523%7Cgb%7CEFC46165%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083624%7Cgb%7CEFC37325%2E1%7C.for.59092-61911.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-61911.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-61911.gi%7C284083624%7Cgb%7CEFC37325%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092041%7Cgb%7CEFC45685%2E1%7C.for.59206-61941.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59206-61941.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59206-61941.gi%7C284092041%7Cgb%7CEFC45685%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080810%7Cgb%7CEFC35195%2E1%7C.for.60500-61911.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.60500-61911.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.60500-61911.gi%7C284080810%7Cgb%7CEFC35195%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092124%7Cgb%7CEFC45767%2E1%7C.for.67410-68831.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.67410-68831.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.67410-68831.gi%7C284092124%7Cgb%7CEFC45767%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090008%7Cgb%7CEFC43662%2E1%7C.for.78206-80506.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.78206-80506.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.78206-80506.gi%7C284090008%7Cgb%7CEFC43662%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096915%7Cgb%7CEFC50542%2E1%7C.for.80135-82254.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.80135-82254.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.80135-82254.gi%7C284096915%7Cgb%7CEFC50542%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085103%7Cgb%7CEFC38789%2E1%7C.for.80057-82221.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.80057-82221.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.80057-82221.gi%7C284085103%7Cgb%7CEFC38789%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095199%7Cgb%7CEFC48830%2E1%7C.for.84894-87733.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.84894-87733.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.84894-87733.gi%7C284095199%7Cgb%7CEFC48830%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090474%7Cgb%7CEFC44126%2E1%7C.for.89200-90179.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89200-90179.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89200-90179.gi%7C284090474%7Cgb%7CEFC44126%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088600%7Cgb%7CEFC42263%2E1%7C.for.89823-91248.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89823-91248.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89823-91248.gi%7C284088600%7Cgb%7CEFC42263%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089013%7Cgb%7CEFC42673%2E1%7C.for.89936-91248.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89936-91248.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89936-91248.gi%7C284089013%7Cgb%7CEFC42673%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089693%7Cgb%7CEFC43349%2E1%7C.for.89820-91221.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89820-91221.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89820-91221.gi%7C284089693%7Cgb%7CEFC43349%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088684%7Cgb%7CEFC42346%2E1%7C.for.89826-91155.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89826-91155.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89826-91155.gi%7C284088684%7Cgb%7CEFC42346%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090665%7Cgb%7CEFC44316%2E1%7C.for.93196-95879.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.93196-95879.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.93196-95879.gi%7C284090665%7Cgb%7CEFC44316%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095605%7Cgb%7CEFC49235%2E1%7C.for.96759-98430.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.96759-98430.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.96759-98430.gi%7C284095605%7Cgb%7CEFC49235%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 ...processing 0 of 10 ...processing 1 of 10 ...processing 2 of 10 ...processing 3 of 10 ...processing 4 of 10 ...processing 5 of 10 ...processing 6 of 10 ...processing 7 of 10 ...processing 8 of 10 ...processing 9 of 10 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 22 ...processing 1 of 22 ...processing 2 of 22 ...processing 3 of 22 ...processing 4 of 22 ...processing 5 of 22 ...processing 6 of 22 ...processing 7 of 22 ...processing 8 of 22 ...processing 9 of 22 ...processing 10 of 22 ...processing 11 of 22 ...processing 12 of 22 ...processing 13 of 22 ...processing 14 of 22 ...processing 15 of 22 ...processing 16 of 22 ...processing 17 of 22 ...processing 18 of 22 ...processing 19 of 22 ...trimming the rest total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 ...processing 0 of 11 ...processing 1 of 11 ...processing 2 of 11 ...processing 3 of 11 ...processing 4 of 11 ...processing 5 of 11 ...processing 6 of 11 ...processing 7 of 11 ...processing 8 of 11 ...processing 9 of 11 ...processing 10 of 11 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:23 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 26 ...processing 1 of 26 ...processing 2 of 26 ...processing 3 of 26 ...processing 4 of 26 ...processing 5 of 26 ...processing 6 of 26 ...processing 7 of 26 ...processing 8 of 26 ...processing 9 of 26 ...processing 10 of 26 ...processing 11 of 26 ...processing 12 of 26 ...processing 13 of 26 ...processing 14 of 26 ...processing 15 of 26 ...processing 16 of 26 ...processing 17 of 26 ...processing 18 of 26 ...processing 19 of 26 ...processing 20 of 26 ...processing 21 of 26 ...processing 22 of 26 ...trimming the rest total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 10 ...processing 1 of 10 ...processing 2 of 10 ...processing 3 of 10 ...processing 4 of 10 ...processing 5 of 10 ...processing 6 of 10 ...processing 7 of 10 ...processing 8 of 10 ...processing 9 of 10 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:15 now processing 0 total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 total clusters:15 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 10 ...processing 1 of 10 ...processing 2 of 10 ...processing 3 of 10 ...processing 4 of 10 ...processing 5 of 10 ...processing 6 of 10 ...processing 7 of 10 ...processing 8 of 10 ...processing 9 of 10 total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:15 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 20 ...processing 1 of 20 ...processing 2 of 20 ...processing 3 of 20 ...processing 4 of 20 ...processing 5 of 20 ...processing 6 of 20 ...processing 7 of 20 ...processing 8 of 20 ...processing 9 of 20 ...processing 10 of 20 ...processing 11 of 20 ...processing 12 of 20 ...processing 13 of 20 ...processing 14 of 20 ...processing 15 of 20 ...processing 16 of 20 ...processing 17 of 20 ...processing 18 of 20 ...processing 19 of 20 ...trimming the rest ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 20 ...processing 1 of 20 ...processing 2 of 20 ...processing 3 of 20 ...processing 4 of 20 ...processing 5 of 20 ...processing 6 of 20 ...processing 7 of 20 ...processing 8 of 20 ...processing 9 of 20 ...processing 10 of 20 ...processing 11 of 20 ...processing 12 of 20 ...processing 13 of 20 ...processing 14 of 20 ...processing 15 of 20 ...processing 16 of 20 ...processing 17 of 20 ...processing 18 of 20 ...processing 19 of 20 ...trimming the rest total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.6660-7758.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.6660-7758.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.6660-7758.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.10462-11848.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.10462-11848.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.10462-11848.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.13353-14446.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.13353-14446.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.13353-14446.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.14681-15653.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.14681-15653.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.14681-15653.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.20345-21718.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.20345-21718.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.20345-21718.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.32435-33316.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.32435-33316.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.32435-33316.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.39067-42944.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.39067-42944.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.39067-42944.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.45084-49037.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.45084-49037.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.45084-49037.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.59291-61882.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.59291-61882.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.59291-61882.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.80209-82114.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.80209-82114.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.80209-82114.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.88298-89260.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.88298-89260.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.88298-89260.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.92375-95723.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.92375-95723.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.92375-95723.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.97137-98274.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.97137-98274.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.97137-98274.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.533-4449.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.533-4449.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.533-4449.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.4956-6050.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.4956-6050.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.4956-6050.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.7628-10823.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.7628-10823.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.7628-10823.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.11496-13164.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.11496-13164.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.11496-13164.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.24994-25708.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.24994-25708.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.24994-25708.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.29572-30475.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.29572-30475.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.29572-30475.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.34007-38507.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.34007-38507.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.34007-38507.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.50769-54822.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.50769-54822.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.50769-54822.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.55086-57427.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.55086-57427.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.55086-57427.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.57834-59002.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.57834-59002.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.57834-59002.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.67587-68691.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.67587-68691.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.67587-68691.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.70350-71375.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.70350-71375.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.70350-71375.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.75324-80306.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.75324-80306.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.75324-80306.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.81948-83324.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.81948-83324.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.81948-83324.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.85060-87533.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.85060-87533.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.85060-87533.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.89219-91048.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.89219-91048.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.89219-91048.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.95379-96241.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.95379-96241.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.95379-96241.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.96958-98230.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.96958-98230.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.96958-98230.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.99602-100272.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.99602-100272.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.99602-100272.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C41 Length: 154535 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:4 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:1 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:8 current j:0 j_size:8 current j:1 j_size:8 current j:2 j_size:8 current j:3 j_size:8 current j:4 j_size:8 current j:5 j_size:8 current j:6 j_size:8 current j:7 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C41.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C41.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:5 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18484%7Chydroxyproline-rich.for.2187-3523.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.2187-3523.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.2187-3523.Ar_EST_120301b_c18484%7Chydroxyproline-rich.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1478%7Cring.for.4286-5745.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.4286-5745.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.4286-5745.Ar_EST_120301b_c1478%7Cring.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17193%7Cf-box.for.5269-6583.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.5269-6583.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.5269-6583.Ar_EST_120301b_c17193%7Cf-box.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4442%7Ceukaryotic.for.10165-11796.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.10165-11796.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.10165-11796.Ar_EST_120301b_rep_c4442%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8843%7Cx-ray.for.7105-8533.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7105-8533.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7105-8533.Ar_EST_120301b_c8843%7Cx-ray.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14364%7Ceukaryotic.for.7508-11779.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7508-11779.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7508-11779.Ar_EST_120301b_rep_c14364%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3817%7Cx-ray.for.7840-9618.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7840-9618.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7840-9618.Ar_EST_120301b_c3817%7Cx-ray.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9670%7Ceukaryotic.for.10491-11699.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.10491-11699.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.10491-11699.Ar_EST_120301b_rep_c9670%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19424%7Cx-ray.for.7408-8427.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7408-8427.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7408-8427.Ar_EST_120301b_rep_c19424%7Cx-ray.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8252%7Cser.for.13210-14765.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.13210-14765.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.13210-14765.Ar_EST_120301b_c8252%7Cser.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11587%7Cpredicted.for.14122-15513.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.14122-15513.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.14122-15513.Ar_EST_120301b_c11587%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3305%7Calpha-l-glutamate.for.16307-18409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.16307-18409.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.16307-18409.Ar_EST_120301b_c3305%7Calpha-l-glutamate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11608%7Cribosomal.for.16177-17586.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.16177-17586.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.16177-17586.Ar_EST_120301b_c11608%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8254%7Calpha-l-glutamate.for.17251-18334.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.17251-18334.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.17251-18334.Ar_EST_120301b_c8254%7Calpha-l-glutamate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1594%7Cformate.for.18210-20004.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.18210-20004.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.18210-20004.Ar_EST_120301b_c1594%7Cformate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9408%7Chypothetical.for.19279-21053.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.19279-21053.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.19279-21053.Ar_EST_120301b_c9408%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17501%7Csignal.for.21176-22828.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.21176-22828.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.21176-22828.Ar_EST_120301b_c17501%7Csignal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6353%7Ceukaryotic.for.25430-27136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.25430-27136.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.25430-27136.Ar_EST_120301b_rep_c6353%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5611%7Ceukaryotic.for.24776-27122.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.24776-27122.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.24776-27122.Ar_EST_120301b_rep_c5611%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig227%7Czinc.for.26362-27835.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.26362-27835.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.26362-27835.120301b_Contig227%7Czinc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20371%7Chypothetical.for.27387-29476.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.27387-29476.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.27387-29476.Ar_EST_120301b_c20371%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2180%7Cpredicted.for.28305-29601.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.28305-29601.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.28305-29601.Ar_EST_120301b_c2180%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c249%7Ccalmodulin.for.29478-30871.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29478-30871.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29478-30871.Ar_EST_120301b_c249%7Ccalmodulin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19994%7Cacyl-.for.30216-31226.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.30216-31226.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.30216-31226.Ar_EST_120301b_rep_c19994%7Cacyl-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1202%7Cwd-40.for.31015-32417.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.31015-32417.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.31015-32417.120301b_Contig1202%7Cwd-40.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13644%7Cserine.for.30760-32079.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.30760-32079.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.30760-32079.Ar_EST_120301b_c13644%7Cserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13183%7C---NA---.for.33943-35220.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.33943-35220.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.33943-35220.Ar_EST_120301b_c13183%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9362%7Cprotein.for.34412-35861.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.34412-35861.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.34412-35861.Ar_EST_120301b_c9362%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c276%7Cprotein.for.35235-36619.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.35235-36619.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.35235-36619.Ar_EST_120301b_c276%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15761%7C---NA---.for.36991-38330.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.36991-38330.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.36991-38330.Ar_EST_120301b_c15761%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8595%7C---NA---.for.38092-39496.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.38092-39496.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.38092-39496.Ar_EST_120301b_c8595%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14176%7Cdg2-90j1.for.39278-40527.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.39278-40527.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.39278-40527.Ar_EST_120301b_c14176%7Cdg2-90j1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17402%7Cprotein.for.40329-41323.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.40329-41323.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.40329-41323.Ar_EST_120301b_c17402%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15139%7C-.for.41265-42587.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.41265-42587.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.41265-42587.Ar_EST_120301b_c15139%7C-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18485%7Cmicrotubule-associated.for.41154-42264.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.41154-42264.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.41154-42264.Ar_EST_120301b_c18485%7Cmicrotubule-associated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2523%7Cnuclear.for.41989-43342.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.41989-43342.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.41989-43342.Ar_EST_120301b_c2523%7Cnuclear.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1188%7Ccytoplasmic.for.43231-44554.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.43231-44554.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.43231-44554.Ar_EST_120301b_c1188%7Ccytoplasmic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15535%7Cmajor.for.44232-45248.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.44232-45248.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.44232-45248.Ar_EST_120301b_c15535%7Cmajor.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13992%7Cmajor.for.45074-46353.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.45074-46353.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.45074-46353.Ar_EST_120301b_c13992%7Cmajor.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5585%7Cbax.for.51794-53356.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.51794-53356.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.51794-53356.Ar_EST_120301b_rep_c5585%7Cbax.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig746%7Chypothetical.for.53525-54999.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.53525-54999.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.53525-54999.120301b_Contig746%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10918%7Csomething.for.56330-57676.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.56330-57676.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.56330-57676.Ar_EST_120301b_c10918%7Csomething.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11928%7Csomething.for.57498-59333.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.57498-59333.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.57498-59333.Ar_EST_120301b_c11928%7Csomething.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17010%7Cleucine.for.57436-58393.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.57436-58393.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.57436-58393.Ar_EST_120301b_c17010%7Cleucine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c211%7Cbeta-.for.65659-67125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.65659-67125.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.65659-67125.Ar_EST_120301b_c211%7Cbeta-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig490%7Cg-protein.for.66457-68388.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66457-68388.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66457-68388.120301b_Contig490%7Cg-protein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig117%7Cheat.for.67633-70247.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.67633-70247.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.67633-70247.120301b_Contig117%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2590%7Cmethyltransferase.for.70139-71511.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.70139-71511.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.70139-71511.Ar_EST_120301b_c2590%7Cmethyltransferase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17137%7Chypothetical.for.70937-72211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.70937-72211.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.70937-72211.Ar_EST_120301b_c17137%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12127%7Cbag.for.72882-74181.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.72882-74181.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.72882-74181.Ar_EST_120301b_c12127%7Cbag.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11701%7Calpha.for.73539-75194.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.73539-75194.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.73539-75194.Ar_EST_120301b_c11701%7Calpha.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11059%7C---NA---.for.74908-75962.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.74908-75962.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.74908-75962.Ar_EST_120301b_c11059%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14862%7Cpredicted.for.75374-76344.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.75374-76344.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.75374-76344.Ar_EST_120301b_c14862%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c21%7Ctrehalose-6-phosphate.for.75748-78779.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.75748-78779.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.75748-78779.Ar_EST_120301b_c21%7Ctrehalose-6-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15607%7C-trehalose-phosphate.for.77246-78385.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.77246-78385.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.77246-78385.Ar_EST_120301b_rep_c15607%7C-trehalose-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15030%7C-trehalose-phosphate.for.75564-76902.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.75564-76902.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.75564-76902.Ar_EST_120301b_c15030%7C-trehalose-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16719%7C---NA---.for.78376-79899.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.78376-79899.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.78376-79899.Ar_EST_120301b_c16719%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4679%7Ccalcium.for.79728-81631.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.79728-81631.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.79728-81631.Ar_EST_120301b_rep_c4679%7Ccalcium.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6123%7Ccalcium-binding.for.79688-81126.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.79688-81126.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.79688-81126.Ar_EST_120301b_rep_c6123%7Ccalcium-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c192%7C40s.for.82195-83413.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82195-83413.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82195-83413.Ar_EST_120301b_c192%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19660%7C40s.for.82241-83413.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82241-83413.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82241-83413.Ar_EST_120301b_rep_c19660%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20551%7C40s.for.82228-83501.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82228-83501.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82228-83501.Ar_EST_120301b_rep_c20551%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19968%7Cribosomal.for.82233-83376.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82233-83376.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82233-83376.Ar_EST_120301b_rep_c19968%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19279%7Cgolgi.for.83109-84409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.83109-84409.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.83109-84409.Ar_EST_120301b_c19279%7Cgolgi.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12101%7Cgolgi.for.83398-84791.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.83398-84791.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.83398-84791.Ar_EST_120301b_c12101%7Cgolgi.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14459%7Cterminal.for.85226-86142.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.85226-86142.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.85226-86142.Ar_EST_120301b_c14459%7Cterminal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11091%7Ccell.for.87167-88894.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.87167-88894.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.87167-88894.Ar_EST_120301b_c11091%7Ccell.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16049%7Cn-acetylglucosaminylphosphatidylinositol.for.91301-92567.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.91301-92567.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.91301-92567.Ar_EST_120301b_c16049%7Cn-acetylglucosaminylphosphatidylinositol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10463%7Cpolycystin.for.93843-95353.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.93843-95353.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.93843-95353.Ar_EST_120301b_c10463%7Cpolycystin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19139%7C---NA---.for.97938-99210.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.97938-99210.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.97938-99210.Ar_EST_120301b_c19139%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19439%7C1106908803323.for.97484-98616.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.97484-98616.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.97484-98616.Ar_EST_120301b_c19439%7C1106908803323.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8788%7Cp02431_mmt-2407_g07_026.for.97690-99044.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.97690-99044.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.97690-99044.Ar_EST_120301b_c8788%7Cp02431_mmt-2407_g07_026.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18344%7Csjs.for.102945-104249.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.102945-104249.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.102945-104249.Ar_EST_120301b_c18344%7Csjs.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11384%7Ctubby.for.103787-105337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.103787-105337.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.103787-105337.Ar_EST_120301b_c11384%7Ctubby.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1737%7Cgaf.for.105107-106111.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.105107-106111.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.105107-106111.Ar_EST_120301b_c1737%7Cgaf.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c764%7Cwd.for.108045-109340.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.108045-109340.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.108045-109340.Ar_EST_120301b_c764%7Cwd.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig429%7Cprotein.for.108478-110082.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.108478-110082.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.108478-110082.120301b_Contig429%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11559%7Csodium-coupled.for.109747-111803.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.109747-111803.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.109747-111803.Ar_EST_120301b_c11559%7Csodium-coupled.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4314%7Cadp-ribosylation.for.112569-113963.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112569-113963.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112569-113963.Ar_EST_120301b_rep_c4314%7Cadp-ribosylation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c564%7Cribosomal.for.113229-114795.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.113229-114795.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.113229-114795.Ar_EST_120301b_c564%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6629%7Chypothetical.for.116163-117627.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.116163-117627.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.116163-117627.Ar_EST_120301b_rep_c6629%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20242%7Chydra.for.116171-117286.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.116171-117286.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.116171-117286.Ar_EST_120301b_rep_c20242%7Chydra.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17271%7Chx350990.for.118102-119434.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.118102-119434.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.118102-119434.Ar_EST_120301b_c17271%7Chx350990.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13812%7Creinhardtii.for.123923-125193.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.123923-125193.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.123923-125193.Ar_EST_120301b_c13812%7Creinhardtii.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8787%7Ctraf-type.for.127786-129861.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.127786-129861.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.127786-129861.Ar_EST_120301b_c8787%7Ctraf-type.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1865%7Cprotein.for.130511-131973.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.130511-131973.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.130511-131973.Ar_EST_120301b_c1865%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17512%7Cpredicted.for.131444-132940.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.131444-132940.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.131444-132940.Ar_EST_120301b_c17512%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10556%7Cpredicted.for.132788-134373.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.132788-134373.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.132788-134373.Ar_EST_120301b_c10556%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig718%7Cci569863.for.134029-135481.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.134029-135481.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.134029-135481.120301b_Contig718%7Cci569863.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2633%7Cprotein.for.134795-136208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.134795-136208.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.134795-136208.Ar_EST_120301b_c2633%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16910%7Cabc.for.137462-139213.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.137462-139213.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.137462-139213.Ar_EST_120301b_c16910%7Cabc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1871%7Catp-binding.for.139326-141444.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.139326-141444.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.139326-141444.Ar_EST_120301b_c1871%7Catp-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17554%7Cby908063.for.138639-140232.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.138639-140232.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.138639-140232.Ar_EST_120301b_c17554%7Cby908063.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11060%7Cpredicted.for.141427-142899.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.141427-142899.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.141427-142899.Ar_EST_120301b_c11060%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13278%7Ca65o08n1.for.142316-143625.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.142316-143625.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.142316-143625.Ar_EST_120301b_c13278%7Ca65o08n1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17268%7C---NA---.for.142931-144237.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.142931-144237.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.142931-144237.Ar_EST_120301b_c17268%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15928%7Cig.for.146738-148264.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.146738-148264.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.146738-148264.Ar_EST_120301b_c15928%7Cig.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2769%7Cprotein.for.149095-151248.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.149095-151248.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.149095-151248.Ar_EST_120301b_c2769%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2370%7Cglycosylphosphatidylinositol.for.150499-151720.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.150499-151720.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.150499-151720.Ar_EST_120301b_c2370%7Cglycosylphosphatidylinositol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13294%7Cglycosylphosphatidylinositol.for.151378-152573.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.151378-152573.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.151378-152573.Ar_EST_120301b_c13294%7Cglycosylphosphatidylinositol.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:72 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:72 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:72 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:72 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:72 now processing 0 total clusters:72 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:40 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:35 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:35 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:43 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:26 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:49 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:44 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:49 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:36 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:41 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081903%7Cgb%7CEFC35733%2E1%7C.for.7123-9212.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7123-9212.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7123-9212.gi%7C284081903%7Cgb%7CEFC35733%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084058%7Cgb%7CEFC37754%2E1%7C.for.7123-8168.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7123-8168.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7123-8168.gi%7C284084058%7Cgb%7CEFC37754%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091255%7Cgb%7CEFC44903%2E1%7C.for.10243-11777.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.10243-11777.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.10243-11777.gi%7C284091255%7Cgb%7CEFC44903%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089366%7Cgb%7CEFC43024%2E1%7C.for.14773-16385.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.14773-16385.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.14773-16385.gi%7C284089366%7Cgb%7CEFC43024%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084895%7Cgb%7CEFC38583%2E1%7C.for.16319-18374.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.16319-18374.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.16319-18374.gi%7C284084895%7Cgb%7CEFC38583%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090994%7Cgb%7CEFC44643%2E1%7C.for.17715-18874.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.17715-18874.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.17715-18874.gi%7C284090994%7Cgb%7CEFC44643%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092047%7Cgb%7CEFC45691%2E1%7C.for.18398-20016.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.18398-20016.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.18398-20016.gi%7C284092047%7Cgb%7CEFC45691%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081730%7Cgb%7CEFC35619%2E1%7C.for.18434-19503.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.18434-19503.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.18434-19503.gi%7C284081730%7Cgb%7CEFC35619%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084767%7Cgb%7CEFC38456%2E1%7C.for.18383-20040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.18383-20040.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.18383-20040.gi%7C284084767%7Cgb%7CEFC38456%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086665%7Cgb%7CEFC40340%2E1%7C.for.23275-24275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.23275-24275.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.23275-24275.gi%7C284086665%7Cgb%7CEFC40340%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086663%7Cgb%7CEFC40338%2E1%7C.for.23281-24302.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.23281-24302.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.23281-24302.gi%7C284086663%7Cgb%7CEFC40338%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089940%7Cgb%7CEFC43594%2E1%7C.for.24971-27117.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.24971-27117.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.24971-27117.gi%7C284089940%7Cgb%7CEFC43594%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C1705567%7Csp%7CP53440%2E1%7CCALMF_NAEGR.for.29497-30869.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.gi%7C1705567%7Csp%7CP53440%2E1%7CCALMF_NAEGR.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097162%7Cgb%7CEFC50789%2E1%7C.for.29497-30869.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.gi%7C284097162%7Cgb%7CEFC50789%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085072%7Cgb%7CEFC38759%2E1%7C.for.29566-30728.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29566-30728.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29566-30728.gi%7C284085072%7Cgb%7CEFC38759%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C311815490%7Cemb%7CCBX84382%2E1%7C.for.29497-30869.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.gi%7C311815490%7Cemb%7CCBX84382%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C206984671%7Cemb%7CCAR80909%2E1%7C.for.29497-30869.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.gi%7C206984671%7Cemb%7CCAR80909%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C458232%7Cgb%7CAAA81897%2E1%7C.for.29497-30869.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.gi%7C458232%7Cgb%7CAAA81897%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091622%7Cgb%7CEFC45268%2E1%7C.for.30178-31220.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.30178-31220.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.30178-31220.gi%7C284091622%7Cgb%7CEFC45268%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081107%7Cgb%7CEFC35296%2E1%7C.for.44270-45567.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.44270-45567.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.44270-45567.gi%7C284081107%7Cgb%7CEFC35296%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093209%7Cgb%7CEFC46848%2E1%7C.for.49527-51284.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.49527-51284.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.49527-51284.gi%7C284093209%7Cgb%7CEFC46848%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092652%7Cgb%7CEFC46293%2E1%7C.for.66531-68353.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66531-68353.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66531-68353.gi%7C284092652%7Cgb%7CEFC46293%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084712%7Cgb%7CEFC38402%2E1%7C.for.66531-68326.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66531-68326.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66531-68326.gi%7C284084712%7Cgb%7CEFC38402%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083518%7Cgb%7CEFC37220%2E1%7C.for.66540-68347.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66540-68347.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66540-68347.gi%7C284083518%7Cgb%7CEFC37220%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095980%7Cgb%7CEFC49609%2E1%7C.for.66525-68335.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66525-68335.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66525-68335.gi%7C284095980%7Cgb%7CEFC49609%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091782%7Cgb%7CEFC45427%2E1%7C.for.66957-68161.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66957-68161.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66957-68161.gi%7C284091782%7Cgb%7CEFC45427%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085503%7Cgb%7CEFC39186%2E1%7C.for.66549-68335.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66549-68335.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66549-68335.gi%7C284085503%7Cgb%7CEFC39186%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093388%7Cgb%7CEFC47026%2E1%7C.for.67134-68098.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.67134-68098.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.67134-68098.gi%7C284093388%7Cgb%7CEFC47026%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095344%7Cgb%7CEFC48975%2E1%7C.for.66495-68329.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66495-68329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66495-68329.gi%7C284095344%7Cgb%7CEFC48975%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095754%7Cgb%7CEFC49384%2E1%7C.for.66543-68347.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66543-68347.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66543-68347.gi%7C284095754%7Cgb%7CEFC49384%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087598%7Cgb%7CEFC41267%2E1%7C.for.67616-70365.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.67616-70365.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.67616-70365.gi%7C284087598%7Cgb%7CEFC41267%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095546%7Cgb%7CEFC49176%2E1%7C.for.75463-77811.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.75463-77811.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.75463-77811.gi%7C284095546%7Cgb%7CEFC49176%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095547%7Cgb%7CEFC49177%2E1%7C.for.77195-78546.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.77195-78546.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.77195-78546.gi%7C284095547%7Cgb%7CEFC49177%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091342%7Cgb%7CEFC44989%2E1%7C.for.79831-81624.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.79831-81624.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.79831-81624.gi%7C284091342%7Cgb%7CEFC44989%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092680%7Cgb%7CEFC46321%2E1%7C.for.82221-83413.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82221-83413.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82221-83413.gi%7C284092680%7Cgb%7CEFC46321%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096588%7Cgb%7CEFC50216%2E1%7C.for.83361-84536.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.83361-84536.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.83361-84536.gi%7C284096588%7Cgb%7CEFC50216%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090846%7Cgb%7CEFC44496%2E1%7C.for.84362-86850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.84362-86850.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.84362-86850.gi%7C284090846%7Cgb%7CEFC44496%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089235%7Cgb%7CEFC42894%2E1%7C.for.88402-90836.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.88402-90836.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.88402-90836.gi%7C284089235%7Cgb%7CEFC42894%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091855%7Cgb%7CEFC45500%2E1%7C.for.91109-92648.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.91109-92648.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.91109-92648.gi%7C284091855%7Cgb%7CEFC45500%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087921%7Cgb%7CEFC41587%2E1%7C.for.96505-97541.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.96505-97541.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.96505-97541.gi%7C284087921%7Cgb%7CEFC41587%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086204%7Cgb%7CEFC39882%2E1%7C.for.100754-101769.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.100754-101769.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.100754-101769.gi%7C284086204%7Cgb%7CEFC39882%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088301%7Cgb%7CEFC41965%2E1%7C.for.104798-105909.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.104798-105909.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.104798-105909.gi%7C284088301%7Cgb%7CEFC41965%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090924%7Cgb%7CEFC44573%2E1%7C.for.108070-110047.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.108070-110047.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.108070-110047.gi%7C284090924%7Cgb%7CEFC44573%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097066%7Cgb%7CEFC50693%2E1%7C.for.111783-113222.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.111783-113222.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.111783-113222.gi%7C284097066%7Cgb%7CEFC50693%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090632%7Cgb%7CEFC44283%2E1%7C.for.112604-113928.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112604-113928.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112604-113928.gi%7C284090632%7Cgb%7CEFC44283%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083438%7Cgb%7CEFC37141%2E1%7C.for.112580-113916.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112580-113916.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112580-113916.gi%7C284083438%7Cgb%7CEFC37141%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085981%7Cgb%7CEFC39661%2E1%7C.for.112604-113919.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112604-113919.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112604-113919.gi%7C284085981%7Cgb%7CEFC39661%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089356%7Cgb%7CEFC43014%2E1%7C.for.112604-113919.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112604-113919.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112604-113919.gi%7C284089356%7Cgb%7CEFC43014%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094385%7Cgb%7CEFC48019%2E1%7C.for.113740-114929.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.113740-114929.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.113740-114929.gi%7C284094385%7Cgb%7CEFC48019%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097074%7Cgb%7CEFC50701%2E1%7C.for.115749-116791.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.115749-116791.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.115749-116791.gi%7C284097074%7Cgb%7CEFC50701%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084567%7Cgb%7CEFC38258%2E1%7C.for.115767-116794.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.115767-116794.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.115767-116794.gi%7C284084567%7Cgb%7CEFC38258%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093075%7Cgb%7CEFC46714%2E1%7C.for.130730-131943.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.130730-131943.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.130730-131943.gi%7C284093075%7Cgb%7CEFC46714%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090726%7Cgb%7CEFC44376%2E1%7C.for.139599-140995.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.139599-140995.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.139599-140995.gi%7C284090726%7Cgb%7CEFC44376%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:28 now processing 0 total clusters:28 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:28 now processing 0 total clusters:28 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.2386-3323.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.2386-3323.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.2386-3323.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.4485-6383.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.4485-6383.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.4485-6383.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.10364-11603.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.10364-11603.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.10364-11603.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.13401-14596.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.13401-14596.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.13401-14596.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.14972-16185.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.14972-16185.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.14972-16185.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.16376-18209.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.16376-18209.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.16376-18209.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.24975-26936.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.24975-26936.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.24975-26936.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.29677-30675.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.29677-30675.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.29677-30675.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.30959-31899.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.30959-31899.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.30959-31899.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.37033-43142.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.37033-43142.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.37033-43142.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.43430-44354.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.43430-44354.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.43430-44354.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.44431-46153.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.44431-46153.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.44431-46153.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.49726-51084.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.49726-51084.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.49726-51084.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.53724-54799.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.53724-54799.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.53724-54799.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.65858-68188.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.65858-68188.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.65858-68188.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.73071-73981.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.73071-73981.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.73071-73981.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.75107-78579.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.75107-78579.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.75107-78579.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.79887-81431.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.79887-81431.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.79887-81431.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.82420-83213.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.82420-83213.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.82420-83213.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.83308-86650.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.83308-86650.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.83308-86650.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.88601-90636.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.88601-90636.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.88601-90636.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.94042-95153.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.94042-95153.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.94042-95153.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.96704-97341.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.96704-97341.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.96704-97341.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.103144-104059.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.103144-104059.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.103144-104059.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.104997-105709.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.104997-105709.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.104997-105709.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.109946-111603.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.109946-111603.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.109946-111603.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.111961-114729.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.111961-114729.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.111961-114729.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.116362-117427.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.116362-117427.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.116362-117427.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.130710-132750.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.130710-132750.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.130710-132750.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.134159-136008.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.134159-136008.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.134159-136008.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.137661-141244.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.137661-141244.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.137661-141244.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.146931-148064.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.146931-148064.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.146931-148064.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.149294-151051.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.149294-151051.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.149294-151051.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.7226-9418.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.7226-9418.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.7226-9418.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.14321-15313.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.14321-15313.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.14321-15313.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.17914-20853.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.17914-20853.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.17914-20853.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.21355-22628.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.21355-22628.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.21355-22628.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.23480-24102.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.23480-24102.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.23480-24102.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.26561-29401.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.26561-29401.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.26561-29401.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.30377-31023.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.30377-31023.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.30377-31023.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/40_0.34142-36419.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/40_0.34142-36419.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/40_0.34142-36419.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/41_0.56529-59133.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/41_0.56529-59133.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/41_0.56529-59133.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/42_0.67815-70165.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/42_0.67815-70165.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/42_0.67815-70165.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/43_0.70338-72011.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/43_0.70338-72011.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/43_0.70338-72011.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/44_0.73731-74994.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/44_0.73731-74994.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/44_0.73731-74994.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/45_0.78575-79699.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/45_0.78575-79699.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/45_0.78575-79699.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/46_0.87346-88694.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/46_0.87346-88694.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/46_0.87346-88694.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/47_0.91308-92448.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/47_0.91308-92448.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/47_0.91308-92448.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/48_0.97683-99010.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/48_0.97683-99010.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/48_0.97683-99010.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/49_0.103986-105137.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/49_0.103986-105137.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/49_0.103986-105137.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/50_0.108244-109905.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/50_0.108244-109905.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/50_0.108244-109905.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/51_0.115948-116594.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/51_0.115948-116594.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/51_0.115948-116594.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/52_0.118285-119234.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/52_0.118285-119234.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/52_0.118285-119234.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/53_0.124122-129661.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/53_0.124122-129661.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/53_0.124122-129661.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/54_0.132987-134173.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/54_0.132987-134173.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/54_0.132987-134173.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/55_0.141626-144037.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/55_0.141626-144037.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/55_0.141626-144037.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/56_0.150698-152373.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/56_0.150698-152373.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/56_0.150698-152373.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C42 Length: 76433 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:3 current j:0 j_size:3 current j:1 j_size:3 current j:2 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C42.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C42.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:9 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:27 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:28 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:27 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:27 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:32 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:22 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:22 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:26 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:26 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7774%7C030702kazb008692ht.for.1-1406.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1-1406.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1-1406.Ar_EST_120301b_rep_c7774%7C030702kazb008692ht.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18851%7C---NA---.for.1-940.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1-940.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1-940.Ar_EST_120301b_c18851%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19024%7C---NA---.for.1-970.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1-970.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1-970.Ar_EST_120301b_c19024%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18770%7Cloc407698.for.1-1451.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1-1451.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1-1451.Ar_EST_120301b_rep_c18770%7Cloc407698.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4948%7Cmyosin.for.10321-12607.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.10321-12607.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.10321-12607.Ar_EST_120301b_rep_c4948%7Cmyosin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19625%7Cgtp-binding.for.8546-9603.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.8546-9603.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.8546-9603.Ar_EST_120301b_rep_c19625%7Cgtp-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5732%7Cm.for.9794-11275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.9794-11275.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.9794-11275.Ar_EST_120301b_rep_c5732%7Cm.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17320%7Cheavy.for.9960-11233.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.9960-11233.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.9960-11233.Ar_EST_120301b_rep_c17320%7Cheavy.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11257%7Cmyosin.for.8686-9748.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.8686-9748.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.8686-9748.Ar_EST_120301b_rep_c11257%7Cmyosin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14762%7Cmyosin.for.13210-14193.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.13210-14193.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.13210-14193.Ar_EST_120301b_c14762%7Cmyosin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig338%7Cmyosin.for.7890-13060.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.7890-13060.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.7890-13060.120301b_Contig338%7Cmyosin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20010%7Cpt030.for.10412-11566.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.10412-11566.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.10412-11566.Ar_EST_120301b_rep_c20010%7Cpt030.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13599%7Ceps15l1.for.8928-10003.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.8928-10003.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.8928-10003.Ar_EST_120301b_rep_c13599%7Ceps15l1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c280%7Ca.for.11708-14561.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.11708-14561.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.11708-14561.Ar_EST_120301b_c280%7Ca.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5072%7Cmyosin.for.7911-10427.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.7911-10427.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.7911-10427.Ar_EST_120301b_rep_c5072%7Cmyosin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9109%7Cinositol-pentakisphosphate.for.14767-16470.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.14767-16470.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.14767-16470.Ar_EST_120301b_c9109%7Cinositol-pentakisphosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2562%7Camino.for.16482-18275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.16482-18275.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.16482-18275.Ar_EST_120301b_c2562%7Camino.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2007%7Camino.for.15884-17370.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.15884-17370.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.15884-17370.Ar_EST_120301b_c2007%7Camino.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11326%7Chypothetical.for.16353-17413.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.16353-17413.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.16353-17413.Ar_EST_120301b_c11326%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12013%7Ccytochrome.for.19357-20363.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.19357-20363.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.19357-20363.Ar_EST_120301b_rep_c12013%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13656%7Crrp12-like.for.21547-22901.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.21547-22901.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.21547-22901.Ar_EST_120301b_c13656%7Crrp12-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8608%7Cnuc173-domain-containing.for.23818-25377.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.23818-25377.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.23818-25377.Ar_EST_120301b_c8608%7Cnuc173-domain-containing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9977%7Crrp12-like.for.24622-26076.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.24622-26076.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.24622-26076.Ar_EST_120301b_c9977%7Crrp12-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15839%7Clucilia.for.27768-29114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.27768-29114.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.27768-29114.Ar_EST_120301b_c15839%7Clucilia.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig969%7Cstructural.for.33495-35407.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.33495-35407.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.33495-35407.120301b_Contig969%7Cstructural.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8672%7Ccondensin.for.34640-36040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.34640-36040.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.34640-36040.Ar_EST_120301b_c8672%7Ccondensin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11535%7Ce3.for.39167-40542.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.39167-40542.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.39167-40542.Ar_EST_120301b_c11535%7Ce3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13262%7Cunnamed.for.39805-41097.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.39805-41097.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.39805-41097.Ar_EST_120301b_c13262%7Cunnamed.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11312%7Cpoly%28adp-ribose%29.for.40444-41924.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.40444-41924.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.40444-41924.Ar_EST_120301b_c11312%7Cpoly%28adp-ribose%29.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19596%7Chypothetical.for.42045-43366.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42045-43366.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42045-43366.Ar_EST_120301b_c19596%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7308%7Cunnamed.for.42244-43364.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42244-43364.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42244-43364.Ar_EST_120301b_rep_c7308%7Cunnamed.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig325%7Cregulatory.for.42802-44973.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42802-44973.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42802-44973.120301b_Contig325%7Cregulatory.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11048%7C26s.for.42818-43974.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42818-43974.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42818-43974.Ar_EST_120301b_rep_c11048%7C26s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7492%7Cconserved.for.45877-46991.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45877-46991.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45877-46991.Ar_EST_120301b_rep_c7492%7Cconserved.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7479%7Cagn_rnc.for.45989-47063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45989-47063.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45989-47063.Ar_EST_120301b_rep_c7479%7Cagn_rnc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7508%7Cagn_rnc.for.45857-46841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45857-46841.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45857-46841.Ar_EST_120301b_rep_c7508%7Cagn_rnc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7480%7Cagn_rnc.for.46091-47455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46091-47455.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46091-47455.Ar_EST_120301b_rep_c7480%7Cagn_rnc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7509%7Cmucin.for.45434-46641.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45434-46641.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45434-46641.Ar_EST_120301b_rep_c7509%7Cmucin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig982%7Cras-related.for.45341-46536.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45341-46536.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45341-46536.120301b_Contig982%7Cras-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig343%7Cson.for.45134-47099.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45134-47099.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45134-47099.120301b_Contig343%7Cson.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5597%7Ccre-clec-202.for.45109-46960.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45109-46960.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45109-46960.Ar_EST_120301b_rep_c5597%7Ccre-clec-202.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7743%7Ccapg.for.45109-46400.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45109-46400.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45109-46400.Ar_EST_120301b_rep_c7743%7Ccapg.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7494%7Chypothetical.for.46415-47555.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46415-47555.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46415-47555.Ar_EST_120301b_rep_c7494%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16710%7Cascaris.for.46415-47537.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46415-47537.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46415-47537.Ar_EST_120301b_rep_c16710%7Cascaris.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19414%7Clusgc1ng-rp-234_a03_02apr2007_031.for.46639-47581.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46639-47581.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46639-47581.Ar_EST_120301b_rep_c19414%7Clusgc1ng-rp-234_a03_02apr2007_031.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7511%7C454.for.45483-46453.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45483-46453.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45483-46453.Ar_EST_120301b_rep_c7511%7C454.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6388%7Cglycoside.for.45638-46638.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45638-46638.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45638-46638.Ar_EST_120301b_rep_c6388%7Cglycoside.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19937%7Cseverin.for.45116-46100.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45116-46100.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45116-46100.Ar_EST_120301b_rep_c19937%7Cseverin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7495%7Cagn_rnc.for.46158-47433.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46158-47433.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46158-47433.Ar_EST_120301b_rep_c7495%7Cagn_rnc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7483%7C---NA---.for.46372-47433.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46372-47433.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46372-47433.Ar_EST_120301b_rep_c7483%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5806%7Cagn_rnc.for.45932-46941.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45932-46941.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45932-46941.Ar_EST_120301b_rep_c5806%7Cagn_rnc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7496%7Cc08024b04sk.for.45501-46672.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45501-46672.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45501-46672.Ar_EST_120301b_rep_c7496%7Cc08024b04sk.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16396%7Cglycoprotein.for.45482-46646.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45482-46646.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45482-46646.Ar_EST_120301b_rep_c16396%7Cglycoprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13573%7Cconserved.for.45147-46240.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45147-46240.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45147-46240.Ar_EST_120301b_rep_c13573%7Cconserved.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20339%7Cprotein.for.45144-46424.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45144-46424.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45144-46424.Ar_EST_120301b_rep_c20339%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig316%7Cpf11-1.for.45115-47057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45115-47057.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45115-47057.120301b_Contig316%7Cpf11-1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7487%7Cagn_rnc.for.46182-47595.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46182-47595.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46182-47595.Ar_EST_120301b_rep_c7487%7Cagn_rnc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6183%7Cpf11-1.for.45491-47522.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45491-47522.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45491-47522.Ar_EST_120301b_rep_c6183%7Cpf11-1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14545%7Chypothetical.for.45965-47068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45965-47068.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45965-47068.Ar_EST_120301b_rep_c14545%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1387%7Cpf11-1.for.45128-47072.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45128-47072.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45128-47072.120301b_Contig1387%7Cpf11-1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7470%7Cdc961434.for.45674-46577.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45674-46577.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45674-46577.Ar_EST_120301b_rep_c7470%7Cdc961434.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14022%7Chypothetical.for.46393-47555.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46393-47555.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46393-47555.Ar_EST_120301b_rep_c14022%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7500%7Cagn_rnc.for.45877-46957.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45877-46957.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45877-46957.Ar_EST_120301b_rep_c7500%7Cagn_rnc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7489%7Cagn_rnc.for.45655-46926.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45655-46926.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45655-46926.Ar_EST_120301b_rep_c7489%7Cagn_rnc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7476%7Cagn_rnc.for.46159-47569.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46159-47569.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46159-47569.Ar_EST_120301b_rep_c7476%7Cagn_rnc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7112%7Clikely.for.45218-47099.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45218-47099.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45218-47099.Ar_EST_120301b_rep_c7112%7Clikely.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7490%7Cpf11-1.for.45848-47172.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45848-47172.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45848-47172.Ar_EST_120301b_rep_c7490%7Cpf11-1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7505%7Cserine.for.45942-47187.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45942-47187.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45942-47187.Ar_EST_120301b_rep_c7505%7Cserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7044%7Cbw637335.for.45144-46373.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45144-46373.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45144-46373.Ar_EST_120301b_rep_c7044%7Cbw637335.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4836%7Cpf11-1.for.45128-47522.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45128-47522.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45128-47522.Ar_EST_120301b_rep_c4836%7Cpf11-1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6893%7Cpf11-1.for.45110-47063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45110-47063.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45110-47063.Ar_EST_120301b_rep_c6893%7Cpf11-1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17766%7C60s.for.45811-47072.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45811-47072.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45811-47072.Ar_EST_120301b_rep_c17766%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4017%7Ccre-clec-202.for.45109-46943.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45109-46943.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45109-46943.Ar_EST_120301b_rep_c4017%7Ccre-clec-202.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7092%7Chypothetical.for.45110-46243.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45110-46243.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45110-46243.Ar_EST_120301b_rep_c7092%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20418%7Cdc981051.for.45137-46306.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45137-46306.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45137-46306.Ar_EST_120301b_rep_c20418%7Cdc981051.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4416%7Cmannose-1-phosphate.for.48178-50188.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.48178-50188.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.48178-50188.Ar_EST_120301b_rep_c4416%7Cmannose-1-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10906%7Cset.for.49734-51197.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.49734-51197.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.49734-51197.Ar_EST_120301b_c10906%7Cset.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16929%7C---NA---.for.51104-52524.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.51104-52524.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.51104-52524.Ar_EST_120301b_c16929%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1490%7Cagencourt_54728430.for.51937-53332.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.51937-53332.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.51937-53332.Ar_EST_120301b_c1490%7Cagencourt_54728430.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c990%7Ccaau.for.53479-54807.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.53479-54807.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.53479-54807.Ar_EST_120301b_c990%7Ccaau.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1347%7C---NA---.for.53147-54553.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.53147-54553.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.53147-54553.120301b_Contig1347%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5238%7C---NA---.for.53147-54491.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.53147-54491.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.53147-54491.Ar_EST_120301b_rep_c5238%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1370%7Cubiquitin.for.53182-54304.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.53182-54304.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.53182-54304.120301b_Contig1370%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c572%7Cfra0980.for.54258-55665.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.54258-55665.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.54258-55665.Ar_EST_120301b_c572%7Cfra0980.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c824%7C---NA---.for.54999-56346.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.54999-56346.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.54999-56346.Ar_EST_120301b_c824%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14096%7Cprotein.for.59864-61124.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59864-61124.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59864-61124.Ar_EST_120301b_c14096%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16701%7Celongation.for.63503-64957.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.63503-64957.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.63503-64957.Ar_EST_120301b_c16701%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14311%7Cmajor.for.65108-66195.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.65108-66195.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.65108-66195.Ar_EST_120301b_c14311%7Cmajor.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10866%7Cpiggybac.for.67346-69111.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.67346-69111.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.67346-69111.Ar_EST_120301b_c10866%7Cpiggybac.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8355%7Cpiggybac.for.67322-68937.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.67322-68937.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.67322-68937.Ar_EST_120301b_c8355%7Cpiggybac.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9544%7Cmlp2991.for.72162-73645.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.72162-73645.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.72162-73645.Ar_EST_120301b_c9544%7Cmlp2991.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10994%7Cct751907.for.75607-76433.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.75607-76433.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.75607-76433.Ar_EST_120301b_c10994%7Cct751907.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:33 now processing 0 total clusters:33 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:33 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 ...processing 0 of 22 ...processing 1 of 22 ...processing 2 of 22 ...processing 3 of 22 ...processing 4 of 22 ...processing 5 of 22 ...processing 6 of 22 ...processing 7 of 22 ...processing 8 of 22 ...processing 9 of 22 ...processing 10 of 22 ...processing 11 of 22 ...processing 12 of 22 ...processing 13 of 22 ...processing 14 of 22 ...processing 15 of 22 ...processing 16 of 22 ...processing 17 of 22 ...processing 18 of 22 ...processing 19 of 22 ...processing 20 of 22 ...processing 21 of 22 total clusters:33 now processing 0 total clusters:33 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:22 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:11 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:15 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:20 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:24 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:20 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:26 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:15 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:12 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:14 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084885%7Cgb%7CEFC38573%2E1%7C.for.1773-3681.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1773-3681.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1773-3681.gi%7C284084885%7Cgb%7CEFC38573%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085553%7Cgb%7CEFC39236%2E1%7C.for.7920-14466.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.7920-14466.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.7920-14466.gi%7C284085553%7Cgb%7CEFC39236%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094451%7Cgb%7CEFC48085%2E1%7C.for.7932-14460.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.7932-14460.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.7932-14460.gi%7C284094451%7Cgb%7CEFC48085%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084972%7Cgb%7CEFC38659%2E1%7C.for.16062-18301.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.16062-18301.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.16062-18301.gi%7C284084972%7Cgb%7CEFC38659%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089951%7Cgb%7CEFC43605%2E1%7C.for.16209-18235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.16209-18235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.16209-18235.gi%7C284089951%7Cgb%7CEFC43605%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096115%7Cgb%7CEFC49744%2E1%7C.for.17570-19460.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.17570-19460.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.17570-19460.gi%7C284096115%7Cgb%7CEFC49744%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096480%7Cgb%7CEFC50108%2E1%7C.for.19232-20352.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.19232-20352.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.19232-20352.gi%7C284096480%7Cgb%7CEFC50108%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096114%7Cgb%7CEFC49743%2E1%7C.for.31950-36420.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.31950-36420.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.31950-36420.gi%7C284096114%7Cgb%7CEFC49743%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084943%7Cgb%7CEFC38631%2E1%7C.for.31962-36417.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.31962-36417.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.31962-36417.gi%7C284084943%7Cgb%7CEFC38631%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091903%7Cgb%7CEFC45547%2E1%7C.for.37513-38519.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.37513-38519.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.37513-38519.gi%7C284091903%7Cgb%7CEFC45547%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096119%7Cgb%7CEFC49748%2E1%7C.for.40644-42565.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.40644-42565.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.40644-42565.gi%7C284096119%7Cgb%7CEFC49748%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092250%7Cgb%7CEFC45893%2E1%7C.for.43363-44942.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43363-44942.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43363-44942.gi%7C284092250%7Cgb%7CEFC45893%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082802%7Cgb%7CEFC36513%2E1%7C.for.43363-44861.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43363-44861.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43363-44861.gi%7C284082802%7Cgb%7CEFC36513%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083285%7Cgb%7CEFC36990%2E1%7C.for.43231-44915.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43231-44915.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43231-44915.gi%7C284083285%7Cgb%7CEFC36990%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086815%7Cgb%7CEFC40489%2E1%7C.for.42949-44954.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42949-44954.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42949-44954.gi%7C284086815%7Cgb%7CEFC40489%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095107%7Cgb%7CEFC48739%2E1%7C.for.43381-44933.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43381-44933.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43381-44933.gi%7C284095107%7Cgb%7CEFC48739%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092145%7Cgb%7CEFC45788%2E1%7C.for.43324-44894.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43324-44894.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43324-44894.gi%7C284092145%7Cgb%7CEFC45788%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086643%7Cgb%7CEFC40318%2E1%7C.for.43342-44903.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43342-44903.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43342-44903.gi%7C284086643%7Cgb%7CEFC40318%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090736%7Cgb%7CEFC44386%2E1%7C.for.43339-44951.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43339-44951.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43339-44951.gi%7C284090736%7Cgb%7CEFC44386%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089920%7Cgb%7CEFC43575%2E1%7C.for.43186-44918.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43186-44918.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43186-44918.gi%7C284089920%7Cgb%7CEFC43575%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089547%7Cgb%7CEFC43204%2E1%7C.for.43201-44921.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43201-44921.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43201-44921.gi%7C284089547%7Cgb%7CEFC43204%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084479%7Cgb%7CEFC38171%2E1%7C.for.48200-50161.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.48200-50161.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.48200-50161.gi%7C284084479%7Cgb%7CEFC38171%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097121%7Cgb%7CEFC50748%2E1%7C.for.48200-50161.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.48200-50161.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.48200-50161.gi%7C284097121%7Cgb%7CEFC50748%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095513%7Cgb%7CEFC49143%2E1%7C.for.59486-60759.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59486-60759.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59486-60759.gi%7C284095513%7Cgb%7CEFC49143%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091174%7Cgb%7CEFC44822%2E1%7C.for.59498-60747.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59498-60747.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59498-60747.gi%7C284091174%7Cgb%7CEFC44822%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096632%7Cgb%7CEFC50259%2E1%7C.for.59504-60747.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59504-60747.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59504-60747.gi%7C284096632%7Cgb%7CEFC50259%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096631%7Cgb%7CEFC50258%2E1%7C.for.56274-60438.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.56274-60438.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.56274-60438.gi%7C284096631%7Cgb%7CEFC50258%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091239%7Cgb%7CEFC44887%2E1%7C.for.59486-60744.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59486-60744.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59486-60744.gi%7C284091239%7Cgb%7CEFC44887%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087686%7Cgb%7CEFC41354%2E1%7C.for.56064-60891.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.56064-60891.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.56064-60891.gi%7C284087686%7Cgb%7CEFC41354%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089822%7Cgb%7CEFC43477%2E1%7C.for.62094-65123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.62094-65123.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.62094-65123.gi%7C284089822%7Cgb%7CEFC43477%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082936%7Cgb%7CEFC36645%2E1%7C.for.64707-66232.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.64707-66232.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.64707-66232.gi%7C284082936%7Cgb%7CEFC36645%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:11 now processing 0 total clusters:11 now processing 0 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:9 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:16 now processing 0 total clusters:16 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 ...processing 0 of 2 ...processing 1 of 2 total clusters:16 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 ...processing 0 of 19 ...processing 1 of 19 ...processing 2 of 19 ...processing 3 of 19 ...processing 4 of 19 ...processing 5 of 19 ...processing 6 of 19 ...processing 7 of 19 ...processing 8 of 19 ...processing 9 of 19 ...processing 10 of 19 ...processing 11 of 19 ...processing 12 of 19 ...processing 13 of 19 ...processing 14 of 19 ...processing 15 of 19 ...processing 16 of 19 ...processing 17 of 19 ...processing 18 of 19 total clusters:16 now processing 0 total clusters:16 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.274-1263.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.274-1263.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.274-1263.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.8848-9548.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.8848-9548.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.8848-9548.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.14966-16270.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.14966-16270.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.14966-16270.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.21746-22701.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.21746-22701.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.21746-22701.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.24017-25876.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.24017-25876.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.24017-25876.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.32149-36220.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.32149-36220.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.32149-36220.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.39366-40342.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.39366-40342.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.39366-40342.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.43001-44777.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.43001-44777.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.43001-44777.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.45867-47168.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.45867-47168.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.45867-47168.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.48367-49988.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.48367-49988.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.48367-49988.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.51249-53132.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.51249-53132.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.51249-53132.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.56263-60924.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.56263-60924.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.56263-60924.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.67521-68911.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.67521-68911.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.67521-68911.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.72361-73478.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.72361-73478.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.72361-73478.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.90-631.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.90-631.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.90-631.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.8089-14361.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.8089-14361.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.8089-14361.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.16083-19260.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.16083-19260.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.16083-19260.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.19431-20152.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.19431-20152.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.19431-20152.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.27967-28914.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.27967-28914.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.27967-28914.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.40004-43176.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.40004-43176.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.40004-43176.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.45295-47426.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.45295-47426.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.45295-47426.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.49931-50997.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.49931-50997.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.49931-50997.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.53346-56146.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.53346-56146.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.53346-56146.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.62293-66032.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.62293-66032.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.62293-66032.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C43 Length: 92164 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:2 current j:0 j_size:2 current j:1 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C43.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C43.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:5 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17092%7Cfp188883.for.3526-4473.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.3526-4473.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.3526-4473.Ar_EST_120301b_c17092%7Cfp188883.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13677%7Cccab.for.5252-6612.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.5252-6612.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.5252-6612.Ar_EST_120301b_c13677%7Cccab.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14518%7Cct749901.for.7990-9313.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.7990-9313.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.7990-9313.Ar_EST_120301b_c14518%7Cct749901.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9288%7Cam569745.for.7381-8837.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.7381-8837.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.7381-8837.Ar_EST_120301b_c9288%7Cam569745.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4141%7Cand.for.9566-11196.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.9566-11196.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.9566-11196.Ar_EST_120301b_rep_c4141%7Cand.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6063%7Cand.for.9750-11028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.9750-11028.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.9750-11028.Ar_EST_120301b_rep_c6063%7Cand.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15157%7Cfs534783.for.12578-13795.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.12578-13795.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.12578-13795.Ar_EST_120301b_c15157%7Cfs534783.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17200%7Ctetratricopeptide.for.13047-14232.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.13047-14232.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.13047-14232.Ar_EST_120301b_c17200%7Ctetratricopeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13584%7Cpinus.for.14744-15962.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.14744-15962.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.14744-15962.Ar_EST_120301b_c13584%7Cpinus.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3070%7C---NA---.for.14732-16014.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.14732-16014.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.14732-16014.Ar_EST_120301b_c3070%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9766%7Cperoxiredoxin.for.17496-18964.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.17496-18964.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.17496-18964.Ar_EST_120301b_c9766%7Cperoxiredoxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10584%7Ccytochrome.for.18605-19915.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.18605-19915.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.18605-19915.Ar_EST_120301b_c10584%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig463%7Calcohol.for.19343-21211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.19343-21211.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.19343-21211.120301b_Contig463%7Calcohol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4099%7Calcohol.for.19322-21212.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.19322-21212.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.19322-21212.Ar_EST_120301b_rep_c4099%7Calcohol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18166%7Ccopper.for.23025-24216.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.23025-24216.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.23025-24216.Ar_EST_120301b_c18166%7Ccopper.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9326%7Cabc.for.25002-26391.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.25002-26391.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.25002-26391.Ar_EST_120301b_c9326%7Cabc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12338%7Cabc.for.26196-27884.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26196-27884.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26196-27884.Ar_EST_120301b_c12338%7Cabc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7977%7Cprotein.for.28339-30585.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.28339-30585.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.28339-30585.Ar_EST_120301b_c7977%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13552%7Ccytochrome.for.30161-31786.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.30161-31786.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.30161-31786.Ar_EST_120301b_c13552%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1677%7Crhogef.for.33450-34814.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.33450-34814.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.33450-34814.Ar_EST_120301b_c1677%7Crhogef.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20340%7Cmembrane.for.32541-33655.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.32541-33655.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.32541-33655.Ar_EST_120301b_rep_c20340%7Cmembrane.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1340%7Crhogef.for.31943-34641.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.31943-34641.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.31943-34641.120301b_Contig1340%7Crhogef.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3406%7Cnucleoside-diphosphate-sugar.for.35037-36828.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.35037-36828.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.35037-36828.Ar_EST_120301b_c3406%7Cnucleoside-diphosphate-sugar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8532%7Cau287079.for.37076-38097.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.37076-38097.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.37076-38097.Ar_EST_120301b_c8532%7Cau287079.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12209%7Cacetyl-.for.38502-39630.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.38502-39630.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.38502-39630.Ar_EST_120301b_c12209%7Cacetyl-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18018%7C---NA---.for.39325-40402.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.39325-40402.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.39325-40402.Ar_EST_120301b_c18018%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12991%7Calpha-tubulin.for.40091-41311.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.40091-41311.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.40091-41311.Ar_EST_120301b_rep_c12991%7Calpha-tubulin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17425%7Crapamycin.for.44284-45658.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.44284-45658.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.44284-45658.Ar_EST_120301b_rep_c17425%7Crapamycin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16058%7Cserine.for.45035-46459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.45035-46459.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.45035-46459.Ar_EST_120301b_c16058%7Cserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2918%7Cphosphatidylinositol.for.46079-47673.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.46079-47673.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.46079-47673.Ar_EST_120301b_c2918%7Cphosphatidylinositol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18515%7Cprotein.for.47799-49079.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.47799-49079.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.47799-49079.Ar_EST_120301b_c18515%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12339%7Cphosphatidylinositol.for.48446-49831.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.48446-49831.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.48446-49831.Ar_EST_120301b_c12339%7Cphosphatidylinositol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10083%7Ctor.for.50097-52131.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.50097-52131.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.50097-52131.Ar_EST_120301b_c10083%7Ctor.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17125%7Cfk506.for.51445-52972.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.51445-52972.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.51445-52972.Ar_EST_120301b_c17125%7Cfk506.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c609%7Ctranslation.for.55264-57136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.55264-57136.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.55264-57136.Ar_EST_120301b_c609%7Ctranslation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16114%7Cpentein-type.for.56590-57910.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.56590-57910.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.56590-57910.Ar_EST_120301b_c16114%7Cpentein-type.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15590%7Cggdef.for.59052-60296.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.59052-60296.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.59052-60296.Ar_EST_120301b_c15590%7Cggdef.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11620%7Chypothetical.for.59484-60929.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.59484-60929.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.59484-60929.Ar_EST_120301b_c11620%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16515%7C---NA---.for.60825-62078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.60825-62078.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.60825-62078.Ar_EST_120301b_c16515%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4560%7Cmember.for.62938-64381.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.62938-64381.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.62938-64381.Ar_EST_120301b_rep_c4560%7Cmember.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20266%7Cdrug.for.61501-63752.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.61501-63752.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.61501-63752.Ar_EST_120301b_c20266%7Cdrug.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5804%7Cbeta-arrestin.for.64403-66155.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.64403-66155.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.64403-66155.Ar_EST_120301b_rep_c5804%7Cbeta-arrestin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6687%7Cpredicted.for.64370-65546.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.64370-65546.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.64370-65546.Ar_EST_120301b_rep_c6687%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4372%7Cbeta-arrestin.for.64168-66155.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.64168-66155.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.64168-66155.Ar_EST_120301b_rep_c4372%7Cbeta-arrestin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13910%7C---NA---.for.64304-65220.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.64304-65220.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.64304-65220.Ar_EST_120301b_rep_c13910%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2549%7Cthioredoxin.for.66566-68310.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.66566-68310.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.66566-68310.Ar_EST_120301b_c2549%7Cthioredoxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15315%7Crna-binding.for.67791-68961.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.67791-68961.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.67791-68961.Ar_EST_120301b_c15315%7Crna-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2976%7Crna-binding.for.68438-70469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.68438-70469.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.68438-70469.Ar_EST_120301b_c2976%7Crna-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3634%7Czz-type.for.70147-71611.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.70147-71611.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.70147-71611.Ar_EST_120301b_c3634%7Czz-type.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2887%7Cubiquitin-associated.for.70584-72038.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.70584-72038.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.70584-72038.Ar_EST_120301b_c2887%7Cubiquitin-associated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig323%7Ctubulin.for.73278-75377.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73278-75377.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73278-75377.120301b_Contig323%7Ctubulin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15599%7Cpopulus.for.74929-76348.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.74929-76348.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.74929-76348.Ar_EST_120301b_c15599%7Cpopulus.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7031%7Cheat.for.76336-77895.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.76336-77895.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.76336-77895.Ar_EST_120301b_rep_c7031%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16987%7Cflagellar.for.77326-78609.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.77326-78609.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.77326-78609.Ar_EST_120301b_c16987%7Cflagellar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9635%7Cgdp-man%3Aman.for.79655-81480.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.79655-81480.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.79655-81480.Ar_EST_120301b_c9635%7Cgdp-man%3Aman.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19551%7Caspargine-linked.for.80083-81464.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.80083-81464.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.80083-81464.Ar_EST_120301b_c19551%7Caspargine-linked.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1696%7Ctrna.for.81261-82761.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.81261-82761.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.81261-82761.Ar_EST_120301b_c1696%7Ctrna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7744%7Cprotein.for.81867-83835.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.81867-83835.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.81867-83835.Ar_EST_120301b_c7744%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18655%7Cmethyltransferase.for.82807-84315.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.82807-84315.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.82807-84315.Ar_EST_120301b_c18655%7Cmethyltransferase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19904%7Cmethyltransferase.for.82712-84249.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.82712-84249.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.82712-84249.Ar_EST_120301b_c19904%7Cmethyltransferase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig233%7Cphospholipase.for.86209-88251.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.86209-88251.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.86209-88251.120301b_Contig233%7Cphospholipase.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:40 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:38 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:38 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:38 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:30 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:49 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:38 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:31 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:40 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:41 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:36 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097056%7Cgb%7CEFC50683%2E1%7C.for.9746-11154.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.9746-11154.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.9746-11154.gi%7C284097056%7Cgb%7CEFC50683%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090825%7Cgb%7CEFC44475%2E1%7C.for.21982-23057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.21982-23057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.21982-23057.gi%7C284090825%7Cgb%7CEFC44475%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084884%7Cgb%7CEFC38572%2E1%7C.for.25245-27535.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.25245-27535.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.25245-27535.gi%7C284084884%7Cgb%7CEFC38572%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090115%7Cgb%7CEFC43768%2E1%7C.for.25005-27712.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.25005-27712.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.25005-27712.gi%7C284090115%7Cgb%7CEFC43768%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085735%7Cgb%7CEFC39417%2E1%7C.for.24999-27664.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.24999-27664.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.24999-27664.gi%7C284085735%7Cgb%7CEFC39417%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096910%7Cgb%7CEFC50537%2E1%7C.for.26056-27625.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26056-27625.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26056-27625.gi%7C284096910%7Cgb%7CEFC50537%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096078%7Cgb%7CEFC49707%2E1%7C.for.26047-27437.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26047-27437.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26047-27437.gi%7C284096078%7Cgb%7CEFC49707%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094270%7Cgb%7CEFC47905%2E1%7C.for.26059-27559.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26059-27559.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26059-27559.gi%7C284094270%7Cgb%7CEFC47905%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083704%7Cgb%7CEFC37404%2E1%7C.for.24999-27673.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.24999-27673.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.24999-27673.gi%7C284083704%7Cgb%7CEFC37404%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094259%7Cgb%7CEFC47894%2E1%7C.for.24999-27682.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.24999-27682.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.24999-27682.gi%7C284094259%7Cgb%7CEFC47894%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094721%7Cgb%7CEFC48354%2E1%7C.for.26065-27559.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26065-27559.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26065-27559.gi%7C284094721%7Cgb%7CEFC48354%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082506%7Cgb%7CEFC36223%2E1%7C.for.28324-29819.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.28324-29819.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.28324-29819.gi%7C284082506%7Cgb%7CEFC36223%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089855%7Cgb%7CEFC43510%2E1%7C.for.28264-30386.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.28264-30386.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.28264-30386.gi%7C284089855%7Cgb%7CEFC43510%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081402%7Cgb%7CEFC35430%2E1%7C.for.42347-43347.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.42347-43347.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.42347-43347.gi%7C284081402%7Cgb%7CEFC35430%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096798%7Cgb%7CEFC50425%2E1%7C.for.43208-44964.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.43208-44964.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.43208-44964.gi%7C284096798%7Cgb%7CEFC50425%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088248%7Cgb%7CEFC41913%2E1%7C.for.44214-52634.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.44214-52634.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.44214-52634.gi%7C284088248%7Cgb%7CEFC41913%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084309%7Cgb%7CEFC38003%2E1%7C.for.55818-57080.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.55818-57080.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.55818-57080.gi%7C284084309%7Cgb%7CEFC38003%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084448%7Cgb%7CEFC38141%2E1%7C.for.55818-57092.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.55818-57092.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.55818-57092.gi%7C284084448%7Cgb%7CEFC38141%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092108%7Cgb%7CEFC45751%2E1%7C.for.56577-58330.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.56577-58330.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.56577-58330.gi%7C284092108%7Cgb%7CEFC45751%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088691%7Cgb%7CEFC42353%2E1%7C.for.57943-58856.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.57943-58856.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.57943-58856.gi%7C284088691%7Cgb%7CEFC42353%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091203%7Cgb%7CEFC44851%2E1%7C.for.61596-63641.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.61596-63641.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.61596-63641.gi%7C284091203%7Cgb%7CEFC44851%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083474%7Cgb%7CEFC37177%2E1%7C.for.61605-63584.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.61605-63584.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.61605-63584.gi%7C284083474%7Cgb%7CEFC37177%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083969%7Cgb%7CEFC37667%2E1%7C.for.61889-63587.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.61889-63587.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.61889-63587.gi%7C284083969%7Cgb%7CEFC37667%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096866%7Cgb%7CEFC50493%2E1%7C.for.63133-64462.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63133-64462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63133-64462.gi%7C284096866%7Cgb%7CEFC50493%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093204%7Cgb%7CEFC46843%2E1%7C.for.63169-64438.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63169-64438.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63169-64438.gi%7C284093204%7Cgb%7CEFC46843%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095151%7Cgb%7CEFC48783%2E1%7C.for.63118-64262.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63118-64262.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63118-64262.gi%7C284095151%7Cgb%7CEFC48783%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095231%7Cgb%7CEFC48862%2E1%7C.for.62968-64462.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.62968-64462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.62968-64462.gi%7C284095231%7Cgb%7CEFC48862%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095060%7Cgb%7CEFC48692%2E1%7C.for.63139-64462.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63139-64462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63139-64462.gi%7C284095060%7Cgb%7CEFC48692%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085175%7Cgb%7CEFC38861%2E1%7C.for.63148-64262.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63148-64262.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63148-64262.gi%7C284085175%7Cgb%7CEFC38861%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081592%7Cgb%7CEFC35538%2E1%7C.for.63118-64214.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63118-64214.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63118-64214.gi%7C284081592%7Cgb%7CEFC35538%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087063%7Cgb%7CEFC40735%2E1%7C.for.63145-64462.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63145-64462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63145-64462.gi%7C284087063%7Cgb%7CEFC40735%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089507%7Cgb%7CEFC43164%2E1%7C.for.63169-64262.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63169-64262.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63169-64262.gi%7C284089507%7Cgb%7CEFC43164%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092547%7Cgb%7CEFC46189%2E1%7C.for.67167-68206.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.67167-68206.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.67167-68206.gi%7C284092547%7Cgb%7CEFC46189%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093081%7Cgb%7CEFC46720%2E1%7C.for.70141-71237.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.70141-71237.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.70141-71237.gi%7C284093081%7Cgb%7CEFC46720%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091177%7Cgb%7CEFC44825%2E1%7C.for.70081-72452.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.70081-72452.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.70081-72452.gi%7C284091177%7Cgb%7CEFC44825%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096878%7Cgb%7CEFC50505%2E1%7C.for.72364-73424.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.72364-73424.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.72364-73424.gi%7C284096878%7Cgb%7CEFC50505%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C464854%7Csp%7CP34108%2E1%7CTBB_NAEGR.for.73326-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.gi%7C464854%7Csp%7CP34108%2E1%7CTBB_NAEGR.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086940%7Cgb%7CEFC40613%2E1%7C.for.73335-75325.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73335-75325.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73335-75325.gi%7C284086940%7Cgb%7CEFC40613%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C9737%7Cemb%7CCAA78362%2E1%7C.for.73326-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.gi%7C9737%7Cemb%7CCAA78362%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086828%7Cgb%7CEFC40502%2E1%7C.for.73287-74890.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73287-74890.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73287-74890.gi%7C284086828%7Cgb%7CEFC40502%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082800%7Cgb%7CEFC36511%2E1%7C.for.73326-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.gi%7C284082800%7Cgb%7CEFC36511%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086082%7Cgb%7CEFC39761%2E1%7C.for.73326-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.gi%7C284086082%7Cgb%7CEFC39761%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091464%7Cgb%7CEFC45110%2E1%7C.for.73278-75409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73278-75409.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73278-75409.gi%7C284091464%7Cgb%7CEFC45110%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084286%7Cgb%7CEFC37980%2E1%7C.for.73347-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73347-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73347-75412.gi%7C284084286%7Cgb%7CEFC37980%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C15082214%7Cgb%7CAAK84066%2E1%7CAF401641_1.for.74148-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.74148-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.74148-75412.gi%7C15082214%7Cgb%7CAAK84066%2E1%7CAF401641_1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C829213%7Cemb%7CCAA56940%2E1%7C.for.73326-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.gi%7C829213%7Cemb%7CCAA56940%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083707%7Cgb%7CEFC37407%2E1%7C.for.73320-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73320-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73320-75412.gi%7C284083707%7Cgb%7CEFC37407%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083068%7Cgb%7CEFC36775%2E1%7C.for.73326-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.gi%7C284083068%7Cgb%7CEFC36775%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084695%7Cgb%7CEFC38385%2E1%7C.for.73320-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73320-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73320-75412.gi%7C284084695%7Cgb%7CEFC38385%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094548%7Cgb%7CEFC48182%2E1%7C.for.77239-78596.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.77239-78596.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.77239-78596.gi%7C284094548%7Cgb%7CEFC48182%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094208%7Cgb%7CEFC47843%2E1%7C.for.79553-81709.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.79553-81709.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.79553-81709.gi%7C284094208%7Cgb%7CEFC47843%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:14 now processing 0 total clusters:14 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:12 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:27 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:27 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:27 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.7580-9113.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.7580-9113.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.7580-9113.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.17695-18764.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.17695-18764.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.17695-18764.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.35236-36628.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.35236-36628.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.35236-36628.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.40264-41111.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.40264-41111.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.40264-41111.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.43407-44764.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.43407-44764.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.43407-44764.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.56776-58130.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.56776-58130.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.56776-58130.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.61024-63552.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.61024-63552.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.61024-63552.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.70280-72252.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.70280-72252.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.70280-72252.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.3725-4273.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.3725-4273.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.3725-4273.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.5451-6412.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.5451-6412.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.5451-6412.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.9846-10954.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.9846-10954.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.9846-10954.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.12777-14032.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.12777-14032.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.12777-14032.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.14931-15844.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.14931-15844.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.14931-15844.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.18804-21022.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.18804-21022.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.18804-21022.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.23224-24016.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.23224-24016.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.23224-24016.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.25198-27684.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.25198-27684.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.25198-27684.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.28463-31586.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.28463-31586.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.28463-31586.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.32142-34623.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.32142-34623.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.32142-34623.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.44413-52772.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.44413-52772.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.44413-52772.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.59251-60729.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.59251-60729.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.59251-60729.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.63132-64321.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.63132-64321.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.63132-64321.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.64367-65955.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.64367-65955.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.64367-65955.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.66765-70269.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.66765-70269.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.66765-70269.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.72563-73227.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.72563-73227.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.72563-73227.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.73477-76148.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.73477-76148.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.73477-76148.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.77438-78411.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.77438-78411.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.77438-78411.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.79752-84119.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.79752-84119.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.79752-84119.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.86408-88051.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.86408-88051.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.86408-88051.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output Maker is now finished!!! [saneash at milou2 re-run0]$ From carsonhh at gmail.com Fri Jan 17 10:55:38 2014 From: carsonhh at gmail.com (Carson Holt) Date: Fri, 17 Jan 2014 10:55:38 -0700 Subject: [maker-devel] Problem with re-annotation In-Reply-To: References: Message-ID: Could you send me these two files. I put the full path below based on your STDERR report. Also this log was from the original run having the issue, and not a new repeated attempt at that one, correct? First file ?> /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_re dundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_1 30708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1/theVoid.AR_HYBRID_130 113_TINTIN_EF2ON_C1/AR_HYBRID_130113_TINTIN_EF2ON_C1.abinit_masked.0.run0%2E hmm.snap Second file ?> /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_re dundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_1 30708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1/AR_HYBRID_130113_TINT IN_EF2ON_C1.gff Thanks, Carson From: Sanea Sheikh Date: Thursday, January 16, 2014 at 3:52 AM To: , Carson Holt Subject: Fwd: [maker-devel] Problem with re-annotation Hello Carson Here it is. Sanea On Tue, Jan 14, 2014 at 1:39 AM, Carson Holt wrote: > Hi Sanea, > > There are no snap calls in your results. It?s as if SNAP never even ran. Did > you capture STDERR from your second run? If so can you send it to me. I just > want to see if it even shows SNAP as having run in the progress reports. > > Thanks, > Carson > > From: Sanea Sheikh > Date: Monday, January 13, 2014 at 2:17 AM > To: > Subject: [maker-devel] Problem with re-annotation > > Hello > > I am using Maker to annotate a genome for which I only have EST data and some > protein data. I ran Maker once using this EST and protein data (est2genome=1, > protein2genome=1). I had the Maker output. I combined all the GFF files for > all the contigs. I used the combined GFF file to train SNAP which gave me a > .hmm file. Now I modified the Maker opts control file. I provided the hmm file > in snap_hmm. I set est2genome=0 and protein2genome=0. I ran Maker again > assuming that now I have trained the gene predictor and I would have better > annotations. But now the output file that I get does not have Maker > annotation. I have attached the control files and the output file for the > re-run so you can have a look and let me know what I am doing wrong in order > to re-annotate the genome using the output from the previous run. > > Sanea > _______________________________________________ maker-devel mailing list > maker-devel at box290.bluehost.comhttp://box290.bluehost.com/mailman/listinfo/mak > er-devel_yandell-lab.org -------------- next part -------------- An HTML attachment was scrubbed... URL: From carsonhh at gmail.com Fri Jan 17 14:34:44 2014 From: carsonhh at gmail.com (Carson Holt) Date: Fri, 17 Jan 2014 14:34:44 -0700 Subject: [maker-devel] Problem with re-annotation In-Reply-To: References: Message-ID: The snap reports are empty, as if SNAP is never calling any genes even though it runs. Could you try running with a different HMM bundled with SNAP? Even though it?s not the right species, I just want to see if it will produce output under different circumstances. ?Carson From: Sanea Sheikh Date: Friday, January 17, 2014 at 12:21 PM To: Carson Holt Cc: Subject: Re: [maker-devel] Problem with re-annotation Hi Here are the two files that you asked for. The log was from a repeated attempt but the same issue was still there. I have attached the output from the repeated attempt as well so you can have a look at that. Sanea On Fri, Jan 17, 2014 at 6:55 PM, Carson Holt wrote: > Could you send me these two files. I put the full path below based on your > STDERR report. Also this log was from the original run having the issue, and > not a new repeated attempt at that one, correct? > > > First file ?> > /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redu > ndant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_13070 > 8_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1/theVoid.AR_HYBRID_130113_TI > NTIN_EF2ON_C1/AR_HYBRID_130113_TINTIN_EF2ON_C1.abinit_masked.0.run0%2Ehmm.snap > > > Second file ?> > /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redu > ndant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_13070 > 8_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1/AR_HYBRID_130113_TINTIN_EF2 > ON_C1.gff > > > Thanks, > Carson > > > From: Sanea Sheikh > Date: Thursday, January 16, 2014 at 3:52 AM > To: , Carson Holt > Subject: Fwd: [maker-devel] Problem with re-annotation > > Hello Carson > Here it is. > Sanea > > On Tue, Jan 14, 2014 at 1:39 AM, Carson Holt wrote: >> Hi Sanea, >> >> There are no snap calls in your results. It?s as if SNAP never even ran. >> Did you capture STDERR from your second run? If so can you send it to me. I >> just want to see if it even shows SNAP as having run in the progress reports. >> >> Thanks, >> Carson >> >> From: Sanea Sheikh >> Date: Monday, January 13, 2014 at 2:17 AM >> To: >> Subject: [maker-devel] Problem with re-annotation >> >> Hello >> >> I am using Maker to annotate a genome for which I only have EST data and some >> protein data. I ran Maker once using this EST and protein data (est2genome=1, >> protein2genome=1). I had the Maker output. I combined all the GFF files for >> all the contigs. I used the combined GFF file to train SNAP which gave me a >> .hmm file. Now I modified the Maker opts control file. I provided the hmm >> file in snap_hmm. I set est2genome=0 and protein2genome=0. I ran Maker again >> assuming that now I have trained the gene predictor and I would have better >> annotations. But now the output file that I get does not have Maker >> annotation. I have attached the control files and the output file for the >> re-run so you can have a look and let me know what I am doing wrong in order >> to re-annotate the genome using the output from the previous run. >> >> Sanea >> _______________________________________________ maker-devel mailing list >> maker-devel at box290.bluehost.comhttp://box290.bluehost.com/mailman/listinfo/ma >> ker-devel_yandell-lab.org > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From mike.thon at gmail.com Fri Jan 17 22:27:07 2014 From: mike.thon at gmail.com (Michael Thon) Date: Sat, 18 Jan 2014 06:27:07 +0100 Subject: [maker-devel] another maker re-annotation question Message-ID: <4BC8D8CA-A150-415D-9985-A2F5E758FDA9@gmail.com> We would like to re-run maker, keeping our locus IDs from a previous run, if possible. We added the old maker annotation in maker_gff and set everything else in the re-annotation section to 0. We also set map_forward=1. The output has gene annotations but the locus IDs were not transferred. I did some searching in the mailing list and it seems that our old annotation should be in model_gff. In that case do we need to strip out all the non-gene model features (match_part, etc) or can we leave it as is? Mike From dence at genetics.utah.edu Fri Jan 17 23:47:02 2014 From: dence at genetics.utah.edu (Daniel Ence) Date: Sat, 18 Jan 2014 06:47:02 +0000 Subject: [maker-devel] another maker re-annotation question In-Reply-To: <4BC8D8CA-A150-415D-9985-A2F5E758FDA9@gmail.com> References: <4BC8D8CA-A150-415D-9985-A2F5E758FDA9@gmail.com> Message-ID: Hi Mike, I am pretty sure that you need to strip out everything else. Just keep the "gene", "transcript" and "exon" features. Thanks, Daniel Daniel Ence Graduate Student Eccles Institute of Human Genetics University of Utah 15 North 2030 East, Room 2100 Salt Lake City, UT 84112-5330 ________________________________________ From: maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of Michael Thon [mike.thon at gmail.com] Sent: Friday, January 17, 2014 10:27 PM To: MAKER Subject: [maker-devel] another maker re-annotation question We would like to re-run maker, keeping our locus IDs from a previous run, if possible. We added the old maker annotation in maker_gff and set everything else in the re-annotation section to 0. We also set map_forward=1. The output has gene annotations but the locus IDs were not transferred. I did some searching in the mailing list and it seems that our old annotation should be in model_gff. In that case do we need to strip out all the non-gene model features (match_part, etc) or can we leave it as is? Mike _______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org From saneasheikh at gmail.com Fri Jan 17 12:21:40 2014 From: saneasheikh at gmail.com (Sanea Sheikh) Date: Fri, 17 Jan 2014 20:21:40 +0100 Subject: [maker-devel] Problem with re-annotation In-Reply-To: References: Message-ID: Hi Here are the two files that you asked for. The log was from a repeated attempt but the same issue was still there. I have attached the output from the repeated attempt as well so you can have a look at that. Sanea On Fri, Jan 17, 2014 at 6:55 PM, Carson Holt wrote: > Could you send me these two files. I put the full path below based on > your STDERR report. Also this log was from the original run having the > issue, and not a new repeated attempt at that one, correct? > > > First file ?> > > /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1/theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/AR_HYBRID_130113_TINTIN_EF2ON_C1.abinit_masked.0.run0%2Ehmm.snap > > > Second file ?> > > /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1/ > AR_HYBRID_130113_TINTIN_EF2ON_C1.gff > > > Thanks, > Carson > > > From: Sanea Sheikh > Date: Thursday, January 16, 2014 at 3:52 AM > To: , Carson Holt > Subject: Fwd: [maker-devel] Problem with re-annotation > > Hello Carson > Here it is. > Sanea > > On Tue, Jan 14, 2014 at 1:39 AM, Carson Holt wrote: > >> Hi Sanea, >> >> There are no snap calls in your results. It?s as if SNAP never even ran. >> Did you capture STDERR from your second run? If so can you send it to me. >> I just want to see if it even shows SNAP as having run in the progress >> reports. >> >> Thanks, >> Carson >> >> From: Sanea Sheikh >> Date: Monday, January 13, 2014 at 2:17 AM >> To: >> Subject: [maker-devel] Problem with re-annotation >> >> Hello >> >> I am using Maker to annotate a genome for which I only have EST data and >> some protein data. I ran Maker once using this EST and protein data >> (est2genome=1, protein2genome=1). I had the Maker output. I combined all >> the GFF files for all the contigs. I used the combined GFF file to train >> SNAP which gave me a .hmm file. Now I modified the Maker opts control file. >> I provided the hmm file in snap_hmm. I set est2genome=0 and >> protein2genome=0. I ran Maker again assuming that now I have trained the >> gene predictor and I would have better annotations. But now the output file >> that I get does not have Maker annotation. I have attached the control >> files and the output file for the re-run so you can have a look and let me >> know what I am doing wrong in order to re-annotate the genome using the >> output from the previous run. >> >> Sanea >> _______________________________________________ maker-devel mailing list >> maker-devel at box290.bluehost.com >> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org >> > > > -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: run1_0.zip Type: application/zip Size: 2242291 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: AR_HYBRID_130113_TINTIN_EF2ON_C1.gff Type: application/octet-stream Size: 123836 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: AR_HYBRID_130113_TINTIN_EF2ON_C1.abinit_masked.0.run0%2Ehmm.snap Type: application/octet-stream Size: 76 bytes Desc: not available URL: From saneasheikh at gmail.com Sat Jan 18 00:19:26 2014 From: saneasheikh at gmail.com (Sanea Sheikh) Date: Sat, 18 Jan 2014 08:19:26 +0100 Subject: [maker-devel] Problem with re-annotation In-Reply-To: References: Message-ID: Hello Here are the files (test.zip) I got from running Maker again with another HMM. It clearly worked this time. I have attached my HMM (run0.hmm) from the previous run (that went wrong) as well. I can see why snap wasn't calling genes before based on this HMM but do you know why I got an HMM like that? Sanea On Fri, Jan 17, 2014 at 10:34 PM, Carson Holt wrote: > The snap reports are empty, as if SNAP is never calling any genes even > though it runs. Could you try running with a different HMM bundled with > SNAP? Even though it?s not the right species, I just want to see if it will > produce output under different circumstances. > > ?Carson > > > From: Sanea Sheikh > Date: Friday, January 17, 2014 at 12:21 PM > To: Carson Holt > Cc: > Subject: Re: [maker-devel] Problem with re-annotation > > Hi > > Here are the two files that you asked for. > > The log was from a repeated attempt but the same issue was still there. I > have attached the output from the repeated attempt as well so you can have > a look at that. > > Sanea > > > On Fri, Jan 17, 2014 at 6:55 PM, Carson Holt wrote: > >> Could you send me these two files. I put the full path below based on >> your STDERR report. Also this log was from the original run having the >> issue, and not a new repeated attempt at that one, correct? >> >> >> First file ?> >> >> /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1/theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/AR_HYBRID_130113_TINTIN_EF2ON_C1.abinit_masked.0.run0%2Ehmm.snap >> >> >> Second file ?> >> >> /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1/ >> AR_HYBRID_130113_TINTIN_EF2ON_C1.gff >> >> >> Thanks, >> Carson >> >> >> From: Sanea Sheikh >> Date: Thursday, January 16, 2014 at 3:52 AM >> To: , Carson Holt >> Subject: Fwd: [maker-devel] Problem with re-annotation >> >> Hello Carson >> Here it is. >> Sanea >> >> On Tue, Jan 14, 2014 at 1:39 AM, Carson Holt wrote: >> >>> Hi Sanea, >>> >>> There are no snap calls in your results. It?s as if SNAP never even >>> ran. Did you capture STDERR from your second run? If so can you send it >>> to me. I just want to see if it even shows SNAP as having run in the >>> progress reports. >>> >>> Thanks, >>> Carson >>> >>> From: Sanea Sheikh >>> Date: Monday, January 13, 2014 at 2:17 AM >>> To: >>> Subject: [maker-devel] Problem with re-annotation >>> >>> Hello >>> >>> I am using Maker to annotate a genome for which I only have EST data and >>> some protein data. I ran Maker once using this EST and protein data >>> (est2genome=1, protein2genome=1). I had the Maker output. I combined all >>> the GFF files for all the contigs. I used the combined GFF file to train >>> SNAP which gave me a .hmm file. Now I modified the Maker opts control file. >>> I provided the hmm file in snap_hmm. I set est2genome=0 and >>> protein2genome=0. I ran Maker again assuming that now I have trained the >>> gene predictor and I would have better annotations. But now the output file >>> that I get does not have Maker annotation. I have attached the control >>> files and the output file for the re-run so you can have a look and let me >>> know what I am doing wrong in order to re-annotate the genome using the >>> output from the previous run. >>> >>> Sanea >>> _______________________________________________ maker-devel mailing list >>> maker-devel at box290.bluehost.com >>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org >>> >> >> >> > -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: test.zip Type: application/zip Size: 2642437 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: run0.hmm Type: application/octet-stream Size: 43969 bytes Desc: not available URL: From carsonhh at gmail.com Sat Jan 18 10:49:31 2014 From: carsonhh at gmail.com (Carson Holt) Date: Sat, 18 Jan 2014 10:49:31 -0700 Subject: [maker-devel] Problem with re-annotation In-Reply-To: References: Message-ID: I?m not an expert at all the details in the raw HMM, but it looks like all your transition probabilities are 0. You need to regenerate the HMM. How many models were used to generate the original HMM? ?Carson From: Sanea Sheikh Date: Saturday, January 18, 2014 at 12:19 AM To: Carson Holt Cc: Subject: Re: [maker-devel] Problem with re-annotation Hello Here are the files (test.zip) I got from running Maker again with another HMM. It clearly worked this time. I have attached my HMM (run0.hmm) from the previous run (that went wrong) as well. I can see why snap wasn't calling genes before based on this HMM but do you know why I got an HMM like that? Sanea On Fri, Jan 17, 2014 at 10:34 PM, Carson Holt wrote: > The snap reports are empty, as if SNAP is never calling any genes even though > it runs. Could you try running with a different HMM bundled with SNAP? Even > though it?s not the right species, I just want to see if it will produce > output under different circumstances. > > ?Carson > > > From: Sanea Sheikh > Date: Friday, January 17, 2014 at 12:21 PM > To: Carson Holt > Cc: > Subject: Re: [maker-devel] Problem with re-annotation > > Hi > > Here are the two files that you asked for. > > The log was from a repeated attempt but the same issue was still there. I have > attached the output from the repeated attempt as well so you can have a look > at that. > > Sanea > > > On Fri, Jan 17, 2014 at 6:55 PM, Carson Holt wrote: >> Could you send me these two files. I put the full path below based on your >> STDERR report. Also this log was from the original run having the issue, and >> not a new repeated attempt at that one, correct? >> >> >> First file ?> >> /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_red >> undant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130 >> 708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1/theVoid.AR_HYBRID_130113 >> _TINTIN_EF2ON_C1/AR_HYBRID_130113_TINTIN_EF2ON_C1.abinit_masked.0.run0%2Ehmm. >> snap >> >> >> Second file ?> >> /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_red >> undant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130 >> 708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1/AR_HYBRID_130113_TINTIN_ >> EF2ON_C1.gff >> >> >> Thanks, >> Carson >> >> >> From: Sanea Sheikh >> Date: Thursday, January 16, 2014 at 3:52 AM >> To: , Carson Holt >> Subject: Fwd: [maker-devel] Problem with re-annotation >> >> Hello Carson >> Here it is. >> Sanea >> >> On Tue, Jan 14, 2014 at 1:39 AM, Carson Holt wrote: >>> Hi Sanea, >>> >>> There are no snap calls in your results. It?s as if SNAP never even ran. >>> Did you capture STDERR from your second run? If so can you send it to me. >>> I just want to see if it even shows SNAP as having run in the progress >>> reports. >>> >>> Thanks, >>> Carson >>> >>> From: Sanea Sheikh >>> Date: Monday, January 13, 2014 at 2:17 AM >>> To: >>> Subject: [maker-devel] Problem with re-annotation >>> >>> Hello >>> >>> I am using Maker to annotate a genome for which I only have EST data and >>> some protein data. I ran Maker once using this EST and protein data >>> (est2genome=1, protein2genome=1). I had the Maker output. I combined all the >>> GFF files for all the contigs. I used the combined GFF file to train SNAP >>> which gave me a .hmm file. Now I modified the Maker opts control file. I >>> provided the hmm file in snap_hmm. I set est2genome=0 and protein2genome=0. >>> I ran Maker again assuming that now I have trained the gene predictor and I >>> would have better annotations. But now the output file that I get does not >>> have Maker annotation. I have attached the control files and the output file >>> for the re-run so you can have a look and let me know what I am doing wrong >>> in order to re-annotate the genome using the output from the previous run. >>> >>> Sanea >>> _______________________________________________ maker-devel mailing list >>> maker-devel at box290.bluehost.comhttp://box290.bluehost.com/mailman/listinfo/m >>> aker-devel_yandell-lab.org >> >> > -------------- next part -------------- An HTML attachment was scrubbed... URL: From charlos9 at gmail.com Tue Jan 21 10:39:03 2014 From: charlos9 at gmail.com (carlos vargas) Date: Tue, 21 Jan 2014 18:39:03 +0100 Subject: [maker-devel] Problem installing maker In-Reply-To: References: Message-ID: Hi Barry, Thank you for you help. I got maker running, however when I try to install it with MPI support I face some issues. I installed MPICH2 and performed the test that comes with the package and it went smoothly, however when I try to install maker the following messages appear. Thank you in advance, Carlos ~/maker/src$ perl Build.PL MAKER supports distributed parallelization via MPI. Would you like to configure MAKER for MPI (This requires that you have an MPI client installed)? [N ]y Please specify the path to 'mpicc' on your system: [/usr/bin/mpicc ] /usr/bin/mpicc Please specify the path to the directory containing 'mpi.h': [/usr/include/mpi ] /usr/include/mpi Would you like to install the web interface to MAKER (MWAS) on this machine This requires that you be logged in as root or use sudo for './Build install'? [N ] N Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'MAKER' version '2.3' The file 'Build' has been created for you to finish installing MAKER. ============================================================================== STATUS MAKER 2.3 ============================================================================== PERL Dependencies: VERIFIED External Programs: VERIFIED External C Libraries: VERIFIED MPI SUPPORT: ENABLED MWAS Web Interface: DISABLED MAKER PACKAGE: CONFIGURATION OK Important Commands: ./Build installdeps #installs missing PERL dependencies ./Build installexes #installs all missing external programs ./Build install #installs MAKER ./Build status #Shows this status menu Other Commands: ./Build repeatmasker #installs RepeatMasker (asks for RepBase) ./Build blast #installs BLAST (NCBI BLAST+) ./Build exonerate #installs Exonerate (v2 on UNIX / v1 on Mac OSX) ./Build snap #installs SNAP ./Build augustus #installs Augustus ./Build apollo #installs Apollo ./Build gbrowse #installs GBrowse (must be root) ./Build jbrowse #installs JBrowse (MAKER copy, not web accecible) ./Build webapollo #installs WebApollo (use maker2wap to create DBs) ./Build mpich2 #installs MPICH2 (but manual install recommended) ~/maker/src$ ./Build install Configuring MAKER with MPI support Installing MAKER... Configuring MAKER with MPI support Subroutine dl_load_flags redefined at (eval 93) line 8. Installing /home/cvargas/maker/src/../perl/lib/MAKER/ConfigData.pm Skip /home/cvargas/maker/src/../perl/config-x86_64-linux-gnu-thread-multi-5.014002 (unchanged) On Mon, Jan 13, 2014 at 10:21 PM, Barry Moore wrote: > Hi Carlos, > > Did you run ./Build install? If not do that first and then you want to > run the copy of maker in ~/software/maker/bin/maker. > > B > > On Jan 13, 2014, at 1:00 PM, carlos vargas wrote: > > Hello, > > I have been trying to install maker but I've been facing several issues. > After installing all of the prerequisites I ran perl Build.PL and ./Build > install. No issues were detected. Afterwards I tried to test maker by > simply executing maker -h and got the following error: > > Can't locate MAKER/ConfigData.pm in @INC (@INC contains: > ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib > ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl > /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 > /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 > /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. > BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line > 42. > > I found a similar thread which suggested reinstalling (which I did) but I > still face the same issue. The full messages are below. > > > Thank you for your help! > > Carlos > > > ~/software/maker/src$ sudo perl Build.PL > > MAKER supports distributed parallelization via MPI. > Would you like to configure MAKER for MPI (This > requires that you have an MPI client installed)? [N ] > N > > Would you like to install the web interface to MAKER (MWAS) on this machine > This requires that you be logged in as root or use sudo for './Build > install'? [N ] > N > Created MYMETA.yml and MYMETA.json > Creating new 'Build' script for 'MAKER' version '2.3' > > > The file 'Build' has been created for you to finish installing MAKER. > > > > ============================================================================== > STATUS MAKER 2.3 > > ============================================================================== > PERL Dependencies: VERIFIED > External Programs: VERIFIED > External C Libraries: VERIFIED > MPI SUPPORT: DISABLED > MWAS Web Interface: DISABLED > MAKER PACKAGE: CONFIGURATION OK > > > Important Commands: > ./Build installdeps #installs missing PERL dependencies > ./Build installexes #installs all missing external programs > ./Build install #installs MAKER > ./Build status #Shows this status menu > > Other Commands: > ./Build repeatmasker #installs RepeatMasker (asks for RepBase) > ./Build blast #installs BLAST (NCBI BLAST+) > ./Build exonerate #installs Exonerate (v2 on UNIX / v1 on > Mac OSX) > ./Build snap #installs SNAP > ./Build augustus #installs Augustus > ./Build apollo #installs Apollo > ./Build gbrowse #installs GBrowse (must be root) > ./Build jbrowse #installs JBrowse (MAKER copy, not web > accecible) > ./Build webapollo #installs WebApollo (use maker2wap to > create DBs) > ./Build mpich2 #installs MPICH2 (but manual install > recommended) > > ~/software/maker/src$ sudo ./Build install > Building MAKER > Installing MAKER... > Building MAKER > Installing ~/software/maker/src/../perl/lib/MAKER/ConfigData.pm > > ~/software/maker/src$ maker -h > Can't locate MAKER/ConfigData.pm in @INC (@INC contains: > ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib > ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl > /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 > /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 > /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. > BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line > 42. > > > _______________________________________________ > maker-devel mailing list > maker-devel at box290.bluehost.com > http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org > > > Barry Moore > Research Scientist > Dept. of Human Genetics > University of Utah > Salt Lake City, UT 84112 > -------------------------------------------- > (801) 585-3543 > > > > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From dence at genetics.utah.edu Tue Jan 21 10:45:32 2014 From: dence at genetics.utah.edu (Daniel Ence) Date: Tue, 21 Jan 2014 17:45:32 +0000 Subject: [maker-devel] Problem installing maker In-Reply-To: References: , Message-ID: Hi Carlos, That message looks like maker installed correctly. Have you tried running it in MPI now? The command to use MPI for maker will look something like "mpiexec -n X maker" where X is the number of processors you want it to use. Thanks, Daniel Daniel Ence Graduate Student Eccles Institute of Human Genetics University of Utah 15 North 2030 East, Room 2100 Salt Lake City, UT 84112-5330 ________________________________ From: maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of carlos vargas [charlos9 at gmail.com] Sent: Tuesday, January 21, 2014 10:39 AM To: Barry Moore Cc: maker-devel at yandell-lab.org Subject: Re: [maker-devel] Problem installing maker Hi Barry, Thank you for you help. I got maker running, however when I try to install it with MPI support I face some issues. I installed MPICH2 and performed the test that comes with the package and it went smoothly, however when I try to install maker the following messages appear. Thank you in advance, Carlos ~/maker/src$ perl Build.PL MAKER supports distributed parallelization via MPI. Would you like to configure MAKER for MPI (This requires that you have an MPI client installed)? [N ]y Please specify the path to 'mpicc' on your system: [/usr/bin/mpicc ] /usr/bin/mpicc Please specify the path to the directory containing 'mpi.h': [/usr/include/mpi ] /usr/include/mpi Would you like to install the web interface to MAKER (MWAS) on this machine This requires that you be logged in as root or use sudo for './Build install'? [N ] N Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'MAKER' version '2.3' The file 'Build' has been created for you to finish installing MAKER. ============================================================================== STATUS MAKER 2.3 ============================================================================== PERL Dependencies: VERIFIED External Programs: VERIFIED External C Libraries: VERIFIED MPI SUPPORT: ENABLED MWAS Web Interface: DISABLED MAKER PACKAGE: CONFIGURATION OK Important Commands: ./Build installdeps #installs missing PERL dependencies ./Build installexes #installs all missing external programs ./Build install #installs MAKER ./Build status #Shows this status menu Other Commands: ./Build repeatmasker #installs RepeatMasker (asks for RepBase) ./Build blast #installs BLAST (NCBI BLAST+) ./Build exonerate #installs Exonerate (v2 on UNIX / v1 on Mac OSX) ./Build snap #installs SNAP ./Build augustus #installs Augustus ./Build apollo #installs Apollo ./Build gbrowse #installs GBrowse (must be root) ./Build jbrowse #installs JBrowse (MAKER copy, not web accecible) ./Build webapollo #installs WebApollo (use maker2wap to create DBs) ./Build mpich2 #installs MPICH2 (but manual install recommended) ~/maker/src$ ./Build install Configuring MAKER with MPI support Installing MAKER... Configuring MAKER with MPI support Subroutine dl_load_flags redefined at (eval 93) line 8. Installing /home/cvargas/maker/src/../perl/lib/MAKER/ConfigData.pm Skip /home/cvargas/maker/src/../perl/config-x86_64-linux-gnu-thread-multi-5.014002 (unchanged) On Mon, Jan 13, 2014 at 10:21 PM, Barry Moore > wrote: Hi Carlos, Did you run ./Build install? If not do that first and then you want to run the copy of maker in ~/software/maker/bin/maker. B On Jan 13, 2014, at 1:00 PM, carlos vargas wrote: Hello, I have been trying to install maker but I've been facing several issues. After installing all of the prerequisites I ran perl Build.PL and ./Build install. No issues were detected. Afterwards I tried to test maker by simply executing maker -h and got the following error: Can't locate MAKER/ConfigData.pm in @INC (@INC contains: ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42. I found a similar thread which suggested reinstalling (which I did) but I still face the same issue. The full messages are below. Thank you for your help! Carlos ~/software/maker/src$ sudo perl Build.PL MAKER supports distributed parallelization via MPI. Would you like to configure MAKER for MPI (This requires that you have an MPI client installed)? [N ] N Would you like to install the web interface to MAKER (MWAS) on this machine This requires that you be logged in as root or use sudo for './Build install'? [N ] N Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'MAKER' version '2.3' The file 'Build' has been created for you to finish installing MAKER. ============================================================================== STATUS MAKER 2.3 ============================================================================== PERL Dependencies: VERIFIED External Programs: VERIFIED External C Libraries: VERIFIED MPI SUPPORT: DISABLED MWAS Web Interface: DISABLED MAKER PACKAGE: CONFIGURATION OK Important Commands: ./Build installdeps #installs missing PERL dependencies ./Build installexes #installs all missing external programs ./Build install #installs MAKER ./Build status #Shows this status menu Other Commands: ./Build repeatmasker #installs RepeatMasker (asks for RepBase) ./Build blast #installs BLAST (NCBI BLAST+) ./Build exonerate #installs Exonerate (v2 on UNIX / v1 on Mac OSX) ./Build snap #installs SNAP ./Build augustus #installs Augustus ./Build apollo #installs Apollo ./Build gbrowse #installs GBrowse (must be root) ./Build jbrowse #installs JBrowse (MAKER copy, not web accecible) ./Build webapollo #installs WebApollo (use maker2wap to create DBs) ./Build mpich2 #installs MPICH2 (but manual install recommended) ~/software/maker/src$ sudo ./Build install Building MAKER Installing MAKER... Building MAKER Installing ~/software/maker/src/../perl/lib/MAKER/ConfigData.pm ~/software/maker/src$ maker -h Can't locate MAKER/ConfigData.pm in @INC (@INC contains: ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42. _______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org Barry Moore Research Scientist Dept. of Human Genetics University of Utah Salt Lake City, UT 84112 -------------------------------------------- (801) 585-3543 -------------- next part -------------- An HTML attachment was scrubbed... URL: From charlos9 at gmail.com Tue Jan 21 10:49:35 2014 From: charlos9 at gmail.com (carlos vargas) Date: Tue, 21 Jan 2014 18:49:35 +0100 Subject: [maker-devel] Problem installing maker In-Reply-To: References: Message-ID: Thank you very much for your quick reply! Sorry, I forgot to attach the error message. /gnmP05/Carlos/mpiannotate$ ~/mpich2-install/bin/mpiexec -n 4 ~/maker/bin/maker /usr/bin/perl: symbol lookup error: /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so: undefined symbol: mca_base_param_reg_int /usr/bin/perl: symbol lookup error: /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so: undefined symbol: mca_base_param_reg_int /usr/bin/perl: symbol lookup error: /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so: undefined symbol: mca_base_param_reg_int /usr/bin/perl: symbol lookup error: /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so: undefined symbol: mca_base_param_reg_int =================================================================================== = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES = EXIT CODE: 127 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES =================================================================================== On Tue, Jan 21, 2014 at 6:45 PM, Daniel Ence wrote: > Hi Carlos, That message looks like maker installed correctly. Have you > tried running it in MPI now? The command to use MPI for maker will look > something like "mpiexec -n X maker" where X is the number of processors you > want it to use. > > Thanks, > Daniel > > Daniel Ence > Graduate Student > Eccles Institute of Human Genetics > University of Utah > 15 North 2030 East, Room 2100 > Salt Lake City, UT 84112-5330 > ------------------------------ > *From:* maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of > carlos vargas [charlos9 at gmail.com] > *Sent:* Tuesday, January 21, 2014 10:39 AM > *To:* Barry Moore > *Cc:* maker-devel at yandell-lab.org > *Subject:* Re: [maker-devel] Problem installing maker > > Hi Barry, > > Thank you for you help. I got maker running, however when I try to > install it with MPI support I face some issues. I installed MPICH2 and > performed the test that comes with the package and it went smoothly, > however when I try to install maker the following messages appear. > > > Thank you in advance, > > Carlos > > ~/maker/src$ perl Build.PL > > MAKER supports distributed parallelization via MPI. > Would you like to configure MAKER for MPI (This > requires that you have an MPI client installed)? [N ]y > > Please specify the path to 'mpicc' on your system: [/usr/bin/mpicc ] > /usr/bin/mpicc > > Please specify the path to the directory containing 'mpi.h': > [/usr/include/mpi ] > /usr/include/mpi > > Would you like to install the web interface to MAKER (MWAS) on this > machine > This requires that you be logged in as root or use sudo for './Build > install'? [N ] > N > Created MYMETA.yml and MYMETA.json > Creating new 'Build' script for 'MAKER' version '2.3' > > > The file 'Build' has been created for you to finish installing MAKER. > > > > ============================================================================== > STATUS MAKER 2.3 > > ============================================================================== > PERL Dependencies: VERIFIED > External Programs: VERIFIED > External C Libraries: VERIFIED > MPI SUPPORT: ENABLED > MWAS Web Interface: DISABLED > MAKER PACKAGE: CONFIGURATION OK > > > Important Commands: > ./Build installdeps #installs missing PERL dependencies > ./Build installexes #installs all missing external programs > ./Build install #installs MAKER > ./Build status #Shows this status menu > > Other Commands: > ./Build repeatmasker #installs RepeatMasker (asks for RepBase) > ./Build blast #installs BLAST (NCBI BLAST+) > ./Build exonerate #installs Exonerate (v2 on UNIX / v1 on Mac OSX) > ./Build snap #installs SNAP > ./Build augustus #installs Augustus > ./Build apollo #installs Apollo > ./Build gbrowse #installs GBrowse (must be root) > ./Build jbrowse #installs JBrowse (MAKER copy, not web accecible) > ./Build webapollo #installs WebApollo (use maker2wap to create DBs) > ./Build mpich2 #installs MPICH2 (but manual install recommended) > ~/maker/src$ ./Build install > Configuring MAKER with MPI support > Installing MAKER... > Configuring MAKER with MPI support > Subroutine dl_load_flags redefined at (eval 93) line 8. > Installing /home/cvargas/maker/src/../perl/lib/MAKER/ConfigData.pm > Skip > /home/cvargas/maker/src/../perl/config-x86_64-linux-gnu-thread-multi-5.014002 > (unchanged) > > > > > On Mon, Jan 13, 2014 at 10:21 PM, Barry Moore wrote: > >> Hi Carlos, >> >> Did you run ./Build install? If not do that first and then you want to >> run the copy of maker in ~/software/maker/bin/maker. >> >> B >> >> On Jan 13, 2014, at 1:00 PM, carlos vargas wrote: >> >> Hello, >> >> I have been trying to install maker but I've been facing several >> issues. After installing all of the prerequisites I ran perl Build.PL and >> ./Build install. No issues were detected. Afterwards I tried to test maker >> by simply executing maker -h and got the following error: >> >> Can't locate MAKER/ConfigData.pm in @INC (@INC contains: >> ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib >> ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl >> /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 >> /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 >> /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. >> BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line >> 42. >> >> I found a similar thread which suggested reinstalling (which I did) but >> I still face the same issue. The full messages are below. >> >> >> Thank you for your help! >> >> Carlos >> >> >> ~/software/maker/src$ sudo perl Build.PL >> >> MAKER supports distributed parallelization via MPI. >> Would you like to configure MAKER for MPI (This >> requires that you have an MPI client installed)? [N ] >> N >> >> Would you like to install the web interface to MAKER (MWAS) on this >> machine >> This requires that you be logged in as root or use sudo for './Build >> install'? [N ] >> N >> Created MYMETA.yml and MYMETA.json >> Creating new 'Build' script for 'MAKER' version '2.3' >> >> >> The file 'Build' has been created for you to finish installing MAKER. >> >> >> >> ============================================================================== >> STATUS MAKER 2.3 >> >> ============================================================================== >> PERL Dependencies: VERIFIED >> External Programs: VERIFIED >> External C Libraries: VERIFIED >> MPI SUPPORT: DISABLED >> MWAS Web Interface: DISABLED >> MAKER PACKAGE: CONFIGURATION OK >> >> >> Important Commands: >> ./Build installdeps #installs missing PERL dependencies >> ./Build installexes #installs all missing external programs >> ./Build install #installs MAKER >> ./Build status #Shows this status menu >> >> Other Commands: >> ./Build repeatmasker #installs RepeatMasker (asks for RepBase) >> ./Build blast #installs BLAST (NCBI BLAST+) >> ./Build exonerate #installs Exonerate (v2 on UNIX / v1 on >> Mac OSX) >> ./Build snap #installs SNAP >> ./Build augustus #installs Augustus >> ./Build apollo #installs Apollo >> ./Build gbrowse #installs GBrowse (must be root) >> ./Build jbrowse #installs JBrowse (MAKER copy, not web >> accecible) >> ./Build webapollo #installs WebApollo (use maker2wap to >> create DBs) >> ./Build mpich2 #installs MPICH2 (but manual install >> recommended) >> >> ~/software/maker/src$ sudo ./Build install >> Building MAKER >> Installing MAKER... >> Building MAKER >> Installing ~/software/maker/src/../perl/lib/MAKER/ConfigData.pm >> >> ~/software/maker/src$ maker -h >> Can't locate MAKER/ConfigData.pm in @INC (@INC contains: >> ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib >> ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl >> /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 >> /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 >> /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. >> BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line >> 42. >> >> >> _______________________________________________ >> maker-devel mailing list >> maker-devel at box290.bluehost.com >> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org >> >> >> Barry Moore >> Research Scientist >> Dept. of Human Genetics >> University of Utah >> Salt Lake City, UT 84112 >> -------------------------------------------- >> (801) 585-3543 >> >> >> >> >> > -------------- next part -------------- An HTML attachment was scrubbed... URL: From carsonhh at gmail.com Tue Jan 21 10:55:10 2014 From: carsonhh at gmail.com (Carson Holt) Date: Tue, 21 Jan 2014 10:55:10 -0700 Subject: [maker-devel] Problem installing maker In-Reply-To: References: Message-ID: The error message says you are using OpenMPI and not MPICH2 ?> /usr/lib/openmpi/lib/openmpi To use OpenMPI set the following before installing maker and before running maker (best to just add it to your ~/.bash_profile) export LD_PRELOAD=/usr/lib/openmpi/lib/libmpi.so You will have to rerun the ?perl Build.PL? and ?./Build install? steps after running this command. Setting LD_PRELOAD is required for any program to use OpenMPI?s shared libraries. Thanks, Carosn From: carlos vargas Date: Tuesday, January 21, 2014 at 10:49 AM To: Daniel Ence Cc: "maker-devel at yandell-lab.org" Subject: Re: [maker-devel] Problem installing maker Thank you very much for your quick reply! Sorry, I forgot to attach the error message. /gnmP05/Carlos/mpiannotate$ ~/mpich2-install/bin/mpiexec -n 4 ~/maker/bin/maker /usr/bin/perl: symbol lookup error: /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so: undefined symbol: mca_base_param_reg_int /usr/bin/perl: symbol lookup error: /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so: undefined symbol: mca_base_param_reg_int /usr/bin/perl: symbol lookup error: /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so: undefined symbol: mca_base_param_reg_int /usr/bin/perl: symbol lookup error: /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so: undefined symbol: mca_base_param_reg_int ============================================================================ ======= = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES = EXIT CODE: 127 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES ============================================================================ ======= On Tue, Jan 21, 2014 at 6:45 PM, Daniel Ence wrote: > Hi Carlos, That message looks like maker installed correctly. Have you tried > running it in MPI now? The command to use MPI for maker will look something > like "mpiexec -n X maker" where X is the number of processors you want it to > use. > > Thanks, > Daniel > > Daniel Ence > Graduate Student > Eccles Institute of Human Genetics > University of Utah > 15 North 2030 East, Room 2100 > Salt Lake City, UT 84112-5330 > > From: maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of carlos > vargas [charlos9 at gmail.com] > Sent: Tuesday, January 21, 2014 10:39 AM > To: Barry Moore > Cc: maker-devel at yandell-lab.org > Subject: Re: [maker-devel] Problem installing maker > > Hi Barry, > > Thank you for you help. I got maker running, however when I try to install it > with MPI support I face some issues. I installed MPICH2 and performed the test > that comes with the package and it went smoothly, however when I try to > install maker the following messages appear. > > > Thank you in advance, > > Carlos > > ~/maker/src$ perl Build.PL > > MAKER supports distributed parallelization via MPI. > Would you like to configure MAKER for MPI (This > requires that you have an MPI client installed)? [N ]y > > Please specify the path to 'mpicc' on your system: [/usr/bin/mpicc ] > /usr/bin/mpicc > > Please specify the path to the directory containing 'mpi.h': [/usr/include/mpi > ] > /usr/include/mpi > > Would you like to install the web interface to MAKER (MWAS) on this machine > This requires that you be logged in as root or use sudo for './Build install'? > [N ] > N > Created MYMETA.yml and MYMETA.json > Creating new 'Build' script for 'MAKER' version '2.3' > > > The file 'Build' has been created for you to finish installing MAKER. > > > ============================================================================== > STATUS MAKER 2.3 > ============================================================================== > PERL Dependencies: VERIFIED > External Programs: VERIFIED > External C Libraries: VERIFIED > MPI SUPPORT: ENABLED > MWAS Web Interface: DISABLED > MAKER PACKAGE: CONFIGURATION OK > > > Important Commands: > ./Build installdeps#installs missing PERL dependencies > ./Build installexes#installs all missing external programs > ./Build install#installs MAKER > ./Build status#Shows this status menu > > Other Commands: > ./Build repeatmasker#installs RepeatMasker (asks for RepBase) > ./Build blast#installs BLAST (NCBI BLAST+) > ./Build exonerate#installs Exonerate (v2 on UNIX / v1 on Mac OSX) > ./Build snap#installs SNAP > ./Build augustus#installs Augustus > ./Build apollo#installs Apollo > ./Build gbrowse#installs GBrowse (must be root) > ./Build jbrowse#installs JBrowse (MAKER copy, not web accecible) > ./Build webapollo#installs WebApollo (use maker2wap to create DBs) > ./Build mpich2#installs MPICH2 (but manual install recommended) > ~/maker/src$ ./Build install > Configuring MAKER with MPI support > Installing MAKER... > Configuring MAKER with MPI support > Subroutine dl_load_flags redefined at (eval 93) line 8. > Installing /home/cvargas/maker/src/../perl/lib/MAKER/ConfigData.pm > Skip > /home/cvargas/maker/src/../perl/config-x86_64-linux-gnu-thread-multi-5.014002 > (unchanged) > > > > > On Mon, Jan 13, 2014 at 10:21 PM, Barry Moore wrote: >> Hi Carlos, >> >> Did you run ./Build install? If not do that first and then you want to run >> the copy of maker in ~/software/maker/bin/maker. >> >> B >> >> On Jan 13, 2014, at 1:00 PM, carlos vargas wrote: >> >>> Hello, >>> >>> I have been trying to install maker but I've been facing several issues. >>> After installing all of the prerequisites I ran perl Build.PL and ./Build >>> install. No issues were detected. Afterwards I tried to test maker by simply >>> executing maker -h and got the following error: >>> >>> Can't locate MAKER/ConfigData.pm in @INC (@INC contains: >>> ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib >>> ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl >>> /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 >>> /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 >>> /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. >>> BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42. >>> >>> I found a similar thread which suggested reinstalling (which I did) but I >>> still face the same issue. The full messages are below. >>> >>> >>> Thank you for your help! >>> >>> Carlos >>> >>> >>> ~/software/maker/src$ sudo perl Build.PL >>> >>> MAKER supports distributed parallelization via MPI. >>> Would you like to configure MAKER for MPI (This >>> requires that you have an MPI client installed)? [N ] >>> N >>> >>> Would you like to install the web interface to MAKER (MWAS) on this machine >>> This requires that you be logged in as root or use sudo for './Build >>> install'? [N ] >>> N >>> Created MYMETA.yml and MYMETA.json >>> Creating new 'Build' script for 'MAKER' version '2.3' >>> >>> >>> The file 'Build' has been created for you to finish installing MAKER. >>> >>> >>> ============================================================================ >>> == >>> STATUS MAKER 2.3 >>> ============================================================================ >>> == >>> PERL Dependencies: VERIFIED >>> External Programs: VERIFIED >>> External C Libraries: VERIFIED >>> MPI SUPPORT: DISABLED >>> MWAS Web Interface: DISABLED >>> MAKER PACKAGE: CONFIGURATION OK >>> >>> >>> Important Commands: >>> ./Build installdeps #installs missing PERL dependencies >>> ./Build installexes #installs all missing external programs >>> ./Build install #installs MAKER >>> ./Build status #Shows this status menu >>> >>> Other Commands: >>> ./Build repeatmasker #installs RepeatMasker (asks for RepBase) >>> ./Build blast #installs BLAST (NCBI BLAST+) >>> ./Build exonerate #installs Exonerate (v2 on UNIX / v1 on Mac >>> OSX) >>> ./Build snap #installs SNAP >>> ./Build augustus #installs Augustus >>> ./Build apollo #installs Apollo >>> ./Build gbrowse #installs GBrowse (must be root) >>> ./Build jbrowse #installs JBrowse (MAKER copy, not web >>> accecible) >>> ./Build webapollo #installs WebApollo (use maker2wap to create >>> DBs) >>> ./Build mpich2 #installs MPICH2 (but manual install >>> recommended) >>> >>> ~/software/maker/src$ sudo ./Build install >>> Building MAKER >>> Installing MAKER... >>> Building MAKER >>> Installing ~/software/maker/src/../perl/lib/MAKER/ConfigData.pm >>> >>> ~/software/maker/src$ maker -h >>> Can't locate MAKER/ConfigData.pm in @INC (@INC contains: >>> ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib >>> ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl >>> /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 >>> /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 >>> /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. >>> BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42. >>> >>> >>> _______________________________________________ >>> maker-devel mailing list >>> maker-devel at box290.bluehost.com >>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org >> >> Barry Moore >> Research Scientist >> Dept. of Human Genetics >> University of Utah >> Salt Lake City, UT 84112 >> -------------------------------------------- >> (801) 585-3543 >> >> >> >> > _______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org -------------- next part -------------- An HTML attachment was scrubbed... URL: From carsonhh at gmail.com Tue Jan 21 10:56:55 2014 From: carsonhh at gmail.com (Carson Holt) Date: Tue, 21 Jan 2014 10:56:55 -0700 Subject: [maker-devel] Problem installing maker In-Reply-To: References: Message-ID: FYI. You may be mixing your MPI configurations, by supplying some values from MPICH2 and others from OpenMPI. You will need to check your configurations. ?Carson From: Carson Holt Date: Tuesday, January 21, 2014 at 10:55 AM To: carlos vargas , Daniel Ence Cc: "maker-devel at yandell-lab.org" Subject: Re: [maker-devel] Problem installing maker The error message says you are using OpenMPI and not MPICH2 ?> /usr/lib/openmpi/lib/openmpi To use OpenMPI set the following before installing maker and before running maker (best to just add it to your ~/.bash_profile) export LD_PRELOAD=/usr/lib/openmpi/lib/libmpi.so You will have to rerun the ?perl Build.PL? and ?./Build install? steps after running this command. Setting LD_PRELOAD is required for any program to use OpenMPI?s shared libraries. Thanks, Carosn From: carlos vargas Date: Tuesday, January 21, 2014 at 10:49 AM To: Daniel Ence Cc: "maker-devel at yandell-lab.org" Subject: Re: [maker-devel] Problem installing maker Thank you very much for your quick reply! Sorry, I forgot to attach the error message. /gnmP05/Carlos/mpiannotate$ ~/mpich2-install/bin/mpiexec -n 4 ~/maker/bin/maker /usr/bin/perl: symbol lookup error: /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so: undefined symbol: mca_base_param_reg_int /usr/bin/perl: symbol lookup error: /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so: undefined symbol: mca_base_param_reg_int /usr/bin/perl: symbol lookup error: /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so: undefined symbol: mca_base_param_reg_int /usr/bin/perl: symbol lookup error: /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so: undefined symbol: mca_base_param_reg_int ============================================================================ ======= = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES = EXIT CODE: 127 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES ============================================================================ ======= On Tue, Jan 21, 2014 at 6:45 PM, Daniel Ence wrote: > Hi Carlos, That message looks like maker installed correctly. Have you tried > running it in MPI now? The command to use MPI for maker will look something > like "mpiexec -n X maker" where X is the number of processors you want it to > use. > > Thanks, > Daniel > > Daniel Ence > Graduate Student > Eccles Institute of Human Genetics > University of Utah > 15 North 2030 East, Room 2100 > Salt Lake City, UT 84112-5330 > > From: maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of carlos > vargas [charlos9 at gmail.com] > Sent: Tuesday, January 21, 2014 10:39 AM > To: Barry Moore > Cc: maker-devel at yandell-lab.org > Subject: Re: [maker-devel] Problem installing maker > > Hi Barry, > > Thank you for you help. I got maker running, however when I try to install it > with MPI support I face some issues. I installed MPICH2 and performed the test > that comes with the package and it went smoothly, however when I try to > install maker the following messages appear. > > > Thank you in advance, > > Carlos > > ~/maker/src$ perl Build.PL > > MAKER supports distributed parallelization via MPI. > Would you like to configure MAKER for MPI (This > requires that you have an MPI client installed)? [N ]y > > Please specify the path to 'mpicc' on your system: [/usr/bin/mpicc ] > /usr/bin/mpicc > > Please specify the path to the directory containing 'mpi.h': [/usr/include/mpi > ] > /usr/include/mpi > > Would you like to install the web interface to MAKER (MWAS) on this machine > This requires that you be logged in as root or use sudo for './Build install'? > [N ] > N > Created MYMETA.yml and MYMETA.json > Creating new 'Build' script for 'MAKER' version '2.3' > > > The file 'Build' has been created for you to finish installing MAKER. > > > ============================================================================== > STATUS MAKER 2.3 > ============================================================================== > PERL Dependencies: VERIFIED > External Programs: VERIFIED > External C Libraries: VERIFIED > MPI SUPPORT: ENABLED > MWAS Web Interface: DISABLED > MAKER PACKAGE: CONFIGURATION OK > > > Important Commands: > ./Build installdeps#installs missing PERL dependencies > ./Build installexes#installs all missing external programs > ./Build install#installs MAKER > ./Build status#Shows this status menu > > Other Commands: > ./Build repeatmasker#installs RepeatMasker (asks for RepBase) > ./Build blast#installs BLAST (NCBI BLAST+) > ./Build exonerate#installs Exonerate (v2 on UNIX / v1 on Mac OSX) > ./Build snap#installs SNAP > ./Build augustus#installs Augustus > ./Build apollo#installs Apollo > ./Build gbrowse#installs GBrowse (must be root) > ./Build jbrowse#installs JBrowse (MAKER copy, not web accecible) > ./Build webapollo#installs WebApollo (use maker2wap to create DBs) > ./Build mpich2#installs MPICH2 (but manual install recommended) > ~/maker/src$ ./Build install > Configuring MAKER with MPI support > Installing MAKER... > Configuring MAKER with MPI support > Subroutine dl_load_flags redefined at (eval 93) line 8. > Installing /home/cvargas/maker/src/../perl/lib/MAKER/ConfigData.pm > Skip > /home/cvargas/maker/src/../perl/config-x86_64-linux-gnu-thread-multi-5.014002 > (unchanged) > > > > > On Mon, Jan 13, 2014 at 10:21 PM, Barry Moore wrote: >> Hi Carlos, >> >> Did you run ./Build install? If not do that first and then you want to run >> the copy of maker in ~/software/maker/bin/maker. >> >> B >> >> On Jan 13, 2014, at 1:00 PM, carlos vargas wrote: >> >>> Hello, >>> >>> I have been trying to install maker but I've been facing several issues. >>> After installing all of the prerequisites I ran perl Build.PL and ./Build >>> install. No issues were detected. Afterwards I tried to test maker by simply >>> executing maker -h and got the following error: >>> >>> Can't locate MAKER/ConfigData.pm in @INC (@INC contains: >>> ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib >>> ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl >>> /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 >>> /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 >>> /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. >>> BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42. >>> >>> I found a similar thread which suggested reinstalling (which I did) but I >>> still face the same issue. The full messages are below. >>> >>> >>> Thank you for your help! >>> >>> Carlos >>> >>> >>> ~/software/maker/src$ sudo perl Build.PL >>> >>> MAKER supports distributed parallelization via MPI. >>> Would you like to configure MAKER for MPI (This >>> requires that you have an MPI client installed)? [N ] >>> N >>> >>> Would you like to install the web interface to MAKER (MWAS) on this machine >>> This requires that you be logged in as root or use sudo for './Build >>> install'? [N ] >>> N >>> Created MYMETA.yml and MYMETA.json >>> Creating new 'Build' script for 'MAKER' version '2.3' >>> >>> >>> The file 'Build' has been created for you to finish installing MAKER. >>> >>> >>> ============================================================================ >>> == >>> STATUS MAKER 2.3 >>> ============================================================================ >>> == >>> PERL Dependencies: VERIFIED >>> External Programs: VERIFIED >>> External C Libraries: VERIFIED >>> MPI SUPPORT: DISABLED >>> MWAS Web Interface: DISABLED >>> MAKER PACKAGE: CONFIGURATION OK >>> >>> >>> Important Commands: >>> ./Build installdeps #installs missing PERL dependencies >>> ./Build installexes #installs all missing external programs >>> ./Build install #installs MAKER >>> ./Build status #Shows this status menu >>> >>> Other Commands: >>> ./Build repeatmasker #installs RepeatMasker (asks for RepBase) >>> ./Build blast #installs BLAST (NCBI BLAST+) >>> ./Build exonerate #installs Exonerate (v2 on UNIX / v1 on Mac >>> OSX) >>> ./Build snap #installs SNAP >>> ./Build augustus #installs Augustus >>> ./Build apollo #installs Apollo >>> ./Build gbrowse #installs GBrowse (must be root) >>> ./Build jbrowse #installs JBrowse (MAKER copy, not web >>> accecible) >>> ./Build webapollo #installs WebApollo (use maker2wap to create >>> DBs) >>> ./Build mpich2 #installs MPICH2 (but manual install >>> recommended) >>> >>> ~/software/maker/src$ sudo ./Build install >>> Building MAKER >>> Installing MAKER... >>> Building MAKER >>> Installing ~/software/maker/src/../perl/lib/MAKER/ConfigData.pm >>> >>> ~/software/maker/src$ maker -h >>> Can't locate MAKER/ConfigData.pm in @INC (@INC contains: >>> ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib >>> ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl >>> /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 >>> /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 >>> /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. >>> BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42. >>> >>> >>> _______________________________________________ >>> maker-devel mailing list >>> maker-devel at box290.bluehost.com >>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org >> >> Barry Moore >> Research Scientist >> Dept. of Human Genetics >> University of Utah >> Salt Lake City, UT 84112 >> -------------------------------------------- >> (801) 585-3543 >> >> >> >> > _______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.comhttp://box290.bluehost.com/mailman/listinfo/m aker-devel_yandell-lab.org -------------- next part -------------- An HTML attachment was scrubbed... URL: From charlos9 at gmail.com Wed Jan 22 17:34:10 2014 From: charlos9 at gmail.com (carlos vargas) Date: Thu, 23 Jan 2014 01:34:10 +0100 Subject: [maker-devel] Problem before running ab-initio predictors Message-ID: Hello, I finally was able to install maker with mpi support, however now I see a new error which I wasn't seeing before. Both for mpiexec and single maker runs I observe the following error just after it finishes running exonerate. Thank you for your time! Carlos deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation cleaning clusters.... total clusters:1 now processing 0 cleaning clusters.... total clusters:1 now processing 0 annotating transcripts Making transcripts ...processing 0 of 1 ERROR: Not a valid predictor in auto_annoator::get_pred_shot at /home/cvargas/maker/bin/../lib/maker/auto_annotator.pm line 2155. maker::auto_annotator::get_pred_shot(FastaSeq=HASH(0x3eb6920), ">2973", "/gnmP05/Carlos/mpiannotatetest/longest.maker.output/longest_d"..., undef, HASH(0x3eeb9f8), 0, "trnascan", HASH(0x3fb1f80), runlog=HASH(0x3ec6e38), ...) called at /home/cvargas/maker/bin/../lib/maker/auto_annotator.pm line 1923 maker::auto_annotator::run_it(ARRAY(0x3fab4d0), "/gnmP05/Carlos/mpiannotatetest/longest.maker.output/longest_d"..., FastaSeq=HASH(0x3eb6920), FastaSeq=HASH(0x3ed42d0), ">2973", "trnascan", HASH(0x3fb1f80)) called at /home/cvargas/maker/bin/../lib/maker/ auto_annotator.pm line 920 maker::auto_annotator::annotate_trans(FastaSeq=HASH(0x3ed42d0), FastaSeq=HASH(0x3eb6920), ">2973", 2973, ARRAY(0x3e818f8), "/gnmP05/Carlos/mpiannotatetest/longest.maker.output/longest_d"..., HASH(0x3fb1f80), runlog=HASH(0x3ec6e38)) called at /home/cvargas/maker/bin/../lib/Process/MpiChunk.pm line 3775 Process::MpiChunk::__ANON__() called at /home/cvargas/maker/bin/../lib/Error.pm line 415 eval {...} called at /home/cvargas/maker/bin/../lib/Error.pm line 407 Error::subs::try(CODE(0x3eb6d58), HASH(0x3eb74b8)) called at /home/cvargas/maker/bin/../lib/Process/MpiChunk.pm line 4215 Process::MpiChunk::_go(Process::MpiChunk=HASH(0x3e90218), "run", HASH(0x3e81748), 1, 4) called at /home/cvargas/maker/bin/../lib/Process/MpiChunk.pm line 341 Process::MpiChunk::run(Process::MpiChunk=HASH(0x3e90218), 0) called at /home/cvargas/maker/bin/../lib/Process/MpiChunk.pm line 357 Process::MpiChunk::run_all(Process::MpiChunk=HASH(0x3e90218), 0) called at /home/cvargas/maker/bin/../lib/Process/MpiTiers.pm line 287 Process::MpiTiers::run_all(Process::MpiTiers=HASH(0x3ea34b8), 0) called at /home/cvargas/maker/bin/../lib/Process/MpiTiers.pm line 287 Process::MpiTiers::run_all(Process::MpiTiers=HASH(0x3e733e8), 0) called at /home/cvargas/maker/bin/maker line 670 --> rank=NA, hostname=Ritchie ERROR: Failed while annotating transcripts ERROR: Chunk failed at level:1, tier_type:4 FAILED CONTIG:2973 ERROR: Chunk failed at level:6, tier_type:0 FAILED CONTIG:2973 examining contents of the fasta file and run log -------------- next part -------------- An HTML attachment was scrubbed... URL: From Ambrose.Andongabo at rothamsted.ac.uk Thu Jan 23 04:19:50 2014 From: Ambrose.Andongabo at rothamsted.ac.uk (Ambrose Andongabo (RRes-Roth)) Date: Thu, 23 Jan 2014 11:19:50 +0000 Subject: [maker-devel] MAKER annotation and Trinity output Message-ID: Dear all, I am using the latest version of MAKER and I keep on getting this error message when I activate fgenesh gene predictor in the maker_opts.ctl file. It runs successfully when using SNAP, GeneMark and AUGUSTUS. If I do not provide my ESTs evidence in the form of Trinity output, the pipeline will run successfully using all the four gene predictors including fgenesh. I wonder if someone encountered such a problem before #--------- command -------------# Widget::fgenesh: /home/data/MAKER_2.30/maker/bin/../lib/Widget/fgenesh/fgenesh_wrap /home/data/mg_annotation/fgenesh/fgenesh /home/data/mg_annotation/fgenesh/Fusarium /tmp/maker_cAePfY/0/164_0.557-1163.Fusarium.auto_annotator.fgenesh.fasta -exon_table:/tmp/maker_cAePfY/0/164_0.557-1163.Fusarium.auto_annotator.xdef.fgenesh > /tmp/maker_cAePfY/0/164_0.557-1163.Fusarium.auto_annotator.fgenesh #-------------------------------# ERROR: FGENESH Failed ERROR: FgenesH failed --> rank=NA, hostname=vnc.rothamsted.ac.uk ERROR: Failed while annotating transcripts ERROR: Chunk failed at level:1, tier_type:4 FAILED CONTIG:contig_1 ERROR: Chunk failed at level:6, tier_type:0 FAILED CONTIG:contig_1 examining contents of the fasta file and run log I will be grateful for your contribution Thanks Ambrose -- This message has been scanned for viruses and dangerous content by MailScanner, and we believe but do not warrant that this e-mail and any attachments thereto do not contain any viruses. However, you are fully responsible for performing any virus scanning. -------------- next part -------------- An HTML attachment was scrubbed... URL: From carson.holt at genetics.utah.edu Thu Jan 23 08:54:05 2014 From: carson.holt at genetics.utah.edu (Carson Holt) Date: Thu, 23 Jan 2014 15:54:05 +0000 Subject: [maker-devel] regarding MAKER In-Reply-To: <979080620.2022.1390472597931.JavaMail.root@mail.icgeb.res.in> References: <765683564.2020.1390472529829.JavaMail.root@mail.icgeb.res.in> <979080620.2022.1390472597931.JavaMail.root@mail.icgeb.res.in> Message-ID: Hi Nadita, You appear to be using input files with spaces in their names. It?s best to avoid whitespace in file names for linux based programs, as they will not always be interpreted correctly. Thanks, Carson On 1/23/14, 3:23 AM, "Nandita Pasari" wrote: > >Sir, > >I am trying to run maker from bin. >I was successful in running the example data but as I proceeded to a >second run from the bin folder I am getting an error as follows: > > >STATUS: Parsing control files... >STATUS: Processing and indexing input FASTA files... >mv: target `435.maker.output/mpi_blastdb/te_proteins%2Efasta.mpi.10.0/' >is not a directory >mv: target `435.maker.output/mpi_blastdb/te_proteins%2Efasta.mpi.10/' is >not a directory >ERROR: SplitDB not created correctly > > at /home/shams/Downloads/maker/bin/../lib/GI.pm line 1116. > GI::split_db("/home/shams/Downloads/maker/data/te_proteins.fasta", >"protein", 10, "/home/shams/Downloads/maker/bin/contig >435.maker.output/mpi_b"..., "C") called at maker line 518 >--> rank=NA, hostname=shams-ThinkCentre-M90p > >How can this be rectified? > >Nandita Pasari >Pre Doctoral Fellow >Synthetic Biology and Biofuels Group >ICGEB >New Delhi > From nandita at icgeb.res.in Thu Jan 23 03:23:17 2014 From: nandita at icgeb.res.in (Nandita Pasari) Date: Thu, 23 Jan 2014 15:53:17 +0530 (IST) Subject: [maker-devel] regarding MAKER In-Reply-To: <765683564.2020.1390472529829.JavaMail.root@mail.icgeb.res.in> Message-ID: <979080620.2022.1390472597931.JavaMail.root@mail.icgeb.res.in> Sir, I am trying to run maker from bin. I was successful in running the example data but as I proceeded to a second run from the bin folder I am getting an error as follows: STATUS: Parsing control files... STATUS: Processing and indexing input FASTA files... mv: target `435.maker.output/mpi_blastdb/te_proteins%2Efasta.mpi.10.0/' is not a directory mv: target `435.maker.output/mpi_blastdb/te_proteins%2Efasta.mpi.10/' is not a directory ERROR: SplitDB not created correctly at /home/shams/Downloads/maker/bin/../lib/GI.pm line 1116. GI::split_db("/home/shams/Downloads/maker/data/te_proteins.fasta", "protein", 10, "/home/shams/Downloads/maker/bin/contig 435.maker.output/mpi_b"..., "C") called at maker line 518 --> rank=NA, hostname=shams-ThinkCentre-M90p How can this be rectified? Nandita Pasari Pre Doctoral Fellow Synthetic Biology and Biofuels Group ICGEB New Delhi From carsonhh at gmail.com Thu Jan 23 10:51:50 2014 From: carsonhh at gmail.com (Carson Holt) Date: Thu, 23 Jan 2014 10:51:50 -0700 Subject: [maker-devel] Problem before running ab-initio predictors In-Reply-To: References: Message-ID: Could you make sure trna=0 is set in the maker_opt.ctl file, and leave that off for the time being. It is a new feature that was added since 2.28, and may be a little buggy. I?ll try and replicate the error here. Could you send me a copy of your maker_opts.ctl file. For the mean time just turn off the trna option and you should be able to run, you can always run with trna=1 later (even by itself as a separate run) without loosing anything. Thanks, Carson From: carlos vargas Date: Wednesday, January 22, 2014 at 5:34 PM To: "maker-devel at yandell-lab.org" Subject: [maker-devel] Problem before running ab-initio predictors Hello, I finally was able to install maker with mpi support, however now I see a new error which I wasn't seeing before. Both for mpiexec and single maker runs I observe the following error just after it finishes running exonerate. Thank you for your time! Carlos deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation cleaning clusters.... total clusters:1 now processing 0 cleaning clusters.... total clusters:1 now processing 0 annotating transcripts Making transcripts ...processing 0 of 1 ERROR: Not a valid predictor in auto_annoator::get_pred_shot at /home/cvargas/maker/bin/../lib/maker/auto_annotator.pm line 2155. maker::auto_annotator::get_pred_shot(FastaSeq=HASH(0x3eb6920), ">2973", "/gnmP05/Carlos/mpiannotatetest/longest.maker.output/longest_d"..., undef, HASH(0x3eeb9f8), 0, "trnascan", HASH(0x3fb1f80), runlog=HASH(0x3ec6e38), ...) called at /home/cvargas/maker/bin/../lib/maker/auto_annotator.pm line 1923 maker::auto_annotator::run_it(ARRAY(0x3fab4d0), "/gnmP05/Carlos/mpiannotatetest/longest.maker.output/longest_d"..., FastaSeq=HASH(0x3eb6920), FastaSeq=HASH(0x3ed42d0), ">2973", "trnascan", HASH(0x3fb1f80)) called at /home/cvargas/maker/bin/../lib/maker/auto_annotator.pm line 920 maker::auto_annotator::annotate_trans(FastaSeq=HASH(0x3ed42d0), FastaSeq=HASH(0x3eb6920), ">2973", 2973, ARRAY(0x3e818f8), "/gnmP05/Carlos/mpiannotatetest/longest.maker.output/longest_d"..., HASH(0x3fb1f80), runlog=HASH(0x3ec6e38)) called at /home/cvargas/maker/bin/../lib/Process/MpiChunk.pm line 3775 Process::MpiChunk::__ANON__() called at /home/cvargas/maker/bin/../lib/Error.pm line 415 eval {...} called at /home/cvargas/maker/bin/../lib/Error.pm line 407 Error::subs::try(CODE(0x3eb6d58), HASH(0x3eb74b8)) called at /home/cvargas/maker/bin/../lib/Process/MpiChunk.pm line 4215 Process::MpiChunk::_go(Process::MpiChunk=HASH(0x3e90218), "run", HASH(0x3e81748), 1, 4) called at /home/cvargas/maker/bin/../lib/Process/MpiChunk.pm line 341 Process::MpiChunk::run(Process::MpiChunk=HASH(0x3e90218), 0) called at /home/cvargas/maker/bin/../lib/Process/MpiChunk.pm line 357 Process::MpiChunk::run_all(Process::MpiChunk=HASH(0x3e90218), 0) called at /home/cvargas/maker/bin/../lib/Process/MpiTiers.pm line 287 Process::MpiTiers::run_all(Process::MpiTiers=HASH(0x3ea34b8), 0) called at /home/cvargas/maker/bin/../lib/Process/MpiTiers.pm line 287 Process::MpiTiers::run_all(Process::MpiTiers=HASH(0x3e733e8), 0) called at /home/cvargas/maker/bin/maker line 670 --> rank=NA, hostname=Ritchie ERROR: Failed while annotating transcripts ERROR: Chunk failed at level:1, tier_type:4 FAILED CONTIG:2973 ERROR: Chunk failed at level:6, tier_type:0 FAILED CONTIG:2973 examining contents of the fasta file and run log _______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org -------------- next part -------------- An HTML attachment was scrubbed... URL: From carsonhh at gmail.com Fri Jan 24 11:32:08 2014 From: carsonhh at gmail.com (Carson Holt) Date: Fri, 24 Jan 2014 11:32:08 -0700 Subject: [maker-devel] MAKER annotation and Trinity output Message-ID: Hi Ambrose, It is likely caused by an issue with hints being generated for Fgenesh, I?ve attached an updated module to be placed here ?> .../maker/lib/Widget/fgenesh.pm. I will also integrate this into the MAKER download. Thanks, Carson From: "Ambrose Andongabo (RRes-Roth)" Date: Thursday, January 23, 2014 at 4:19 AM To: "maker-devel at yandell-lab.org" Subject: [maker-devel] MAKER annotation and Trinity output Dear all, I am using the latest version of MAKER and I keep on getting this error message when I activate fgenesh gene predictor in the maker_opts.ctl file. It runs successfully when using SNAP, GeneMark and AUGUSTUS. If I do not provide my ESTs evidence in the form of Trinity output, the pipeline will run successfully using all the four gene predictors including fgenesh. I wonder if someone encountered such a problem before #--------- command -------------# Widget::fgenesh: /home/data/MAKER_2.30/maker/bin/../lib/Widget/fgenesh/fgenesh_wrap /home/data/mg_annotation/fgenesh/fgenesh /home/data/mg_annotation/fgenesh/Fusarium /tmp/maker_cAePfY/0/164_0.557-1163.Fusarium.auto_annotator.fgenesh.fasta -exon_table:/tmp/maker_cAePfY/0/164_0.557-1163.Fusarium.auto_annotator.xdef. fgenesh > /tmp/maker_cAePfY/0/164_0.557-1163.Fusarium.auto_annotator.fgenesh #-------------------------------# ERROR: FGENESH Failed ERROR: FgenesH failed --> rank=NA, hostname=vnc.rothamsted.ac.uk ERROR: Failed while annotating transcripts ERROR: Chunk failed at level:1, tier_type:4 FAILED CONTIG:contig_1 ERROR: Chunk failed at level:6, tier_type:0 FAILED CONTIG:contig_1 examining contents of the fasta file and run log I will be grateful for your contribution Thanks Ambrose -- This message has been scanned for viruses and dangerous content by MailScanner , and we believe but do not warrant that this e-mail and any attachments thereto do not contain any viruses. However, you are fully responsible for performing any virus scanning. _______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: fgenesh.pm Type: text/x-perl-script Size: 19743 bytes Desc: not available URL: From Ambrose.Andongabo at rothamsted.ac.uk Mon Jan 27 03:44:24 2014 From: Ambrose.Andongabo at rothamsted.ac.uk (Ambrose Andongabo (RRes-Roth)) Date: Mon, 27 Jan 2014 10:44:24 +0000 Subject: [maker-devel] Trinity and fgenesh wrapper for MAKER Message-ID: Dear Carson, Many thanks for the quick fix to the fgenesh.pm perl module in MAKER. I ran the annotation over the weekend and obtained the desired results. Thanks Ambrose -- This message has been scanned for viruses and dangerous content by MailScanner, and we believe but do not warrant that this e-mail and any attachments thereto do not contain any viruses. However, you are fully responsible for performing any virus scanning. -------------- next part -------------- An HTML attachment was scrubbed... URL: From Michael.Li3 at AGR.GC.CA Mon Jan 27 09:17:29 2014 From: Michael.Li3 at AGR.GC.CA (Li, Michael) Date: Mon, 27 Jan 2014 16:17:29 +0000 Subject: [maker-devel] Transcriptome Assmeblies for Protein Evidence Message-ID: <229AF11430CC544B8987653593A750A98765E327@ONOTTAXES3.AGR.GC.CA> Hi everyone, I've been tasked to run MAKER on a genome that we have recently sequenced and assembled de novo. Along with the genome, the transcriptome has also been assembled using SOAPdenovo. I've been told that we've experimented with different kmers, but I'm not sure which kmer is ideal for use. One kmer assembly has the highest N50 for contigs, while another has the highest N50 for scaffolds, but it comes with a lot of gaps. Would gaps impact how MAKER handles evidence alignment or the overall annotation? Or would either work well with MAKER? Thanks in advance! Michael Li Co-op Student From carsonhh at gmail.com Mon Jan 27 09:22:57 2014 From: carsonhh at gmail.com (Carson Holt) Date: Mon, 27 Jan 2014 09:22:57 -0700 Subject: [maker-devel] Transcriptome Assmeblies for Protein Evidence Message-ID: You should use the scaffolds. Large gaps will not affect the annotation and are common in the scaffolds of all newly assembled genomes. Thanks, Carson On 1/27/14, 9:17 AM, "Li, Michael" wrote: >Hi everyone, > >I've been tasked to run MAKER on a genome that we have recently sequenced >and assembled de novo. Along with the genome, the transcriptome has also >been assembled using SOAPdenovo. I've been told that we've experimented >with different kmers, but I'm not sure which kmer is ideal for use. > >One kmer assembly has the highest N50 for contigs, while another has the >highest N50 for scaffolds, but it comes with a lot of gaps. > >Would gaps impact how MAKER handles evidence alignment or the overall >annotation? Or would either work well with MAKER? > >Thanks in advance! > >Michael Li >Co-op Student > >_______________________________________________ >maker-devel mailing list >maker-devel at box290.bluehost.com >http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org From carsonhh at gmail.com Mon Jan 27 10:27:28 2014 From: carsonhh at gmail.com (Carson Holt) Date: Mon, 27 Jan 2014 10:27:28 -0700 Subject: [maker-devel] Trinity and fgenesh wrapper for MAKER In-Reply-To: References: Message-ID: Thanks for letting me know. I?m glad it?s working. ?Carson From: "Ambrose Andongabo (RRes-Roth)" Date: Monday, January 27, 2014 at 3:44 AM To: Carson Holt , "maker-devel at yandell-lab.org" Subject: Trinity and fgenesh wrapper for MAKER Dear Carson, Many thanks for the quick fix to the fgenesh.pm perl module in MAKER. I ran the annotation over the weekend and obtained the desired results. Thanks Ambrose -- This message has been scanned for viruses and dangerous content by MailScanner , and we believe but do not warrant that this e-mail and any attachments thereto do not contain any viruses. However, you are fully responsible for performing any virus scanning. -------------- next part -------------- An HTML attachment was scrubbed... URL: From carson.holt at genetics.utah.edu Mon Jan 27 11:29:21 2014 From: carson.holt at genetics.utah.edu (Carson Holt) Date: Mon, 27 Jan 2014 18:29:21 +0000 Subject: [maker-devel] MAKER failing In-Reply-To: References: Message-ID: You need to supply the captured STDERR from your maker run. The cause of any failure will be printed to the screen Thanks, Carson From: Seth Munholland > Date: Monday, January 27, 2014 at 11:24 AM To: > Subject: MAKER failing Hello Everyone, I recently installed MAKER 2.28 and the installation went smoothly. When I ran it on my assembly the first time I didn't properly configure the CTL files and so genemark and snap were not run (I didn't supply hmm links). After correcting this and running MAKER again my log file consists of nothing but STARTED...FAILED. I don't know what files would be useful to attach to help figure out the problem, so I'm starting with the CTL.log files I used and the resultant master_datastore_index.log file. Any input would be greatly appreciated. Seth Munholland, B.Sc. Department of Biological Sciences Rm. 304 Biology Building University of Windsor 401 Sunset Ave. N9B 3P4 T: (519) 253-3000 Ext: 4755 -------------- next part -------------- An HTML attachment was scrubbed... URL: From munholl at uwindsor.ca Mon Jan 27 11:24:17 2014 From: munholl at uwindsor.ca (Seth Munholland) Date: Mon, 27 Jan 2014 13:24:17 -0500 Subject: [maker-devel] MAKER failing Message-ID: Hello Everyone, I recently installed MAKER 2.28 and the installation went smoothly. When I ran it on my assembly the first time I didn't properly configure the CTL files and so genemark and snap were not run (I didn't supply hmm links). After correcting this and running MAKER again my log file consists of nothing but STARTED...FAILED. I don't know what files would be useful to attach to help figure out the problem, so I'm starting with the CTL.log files I used and the resultant master_datastore_index.log file. Any input would be greatly appreciated. Seth Munholland, B.Sc. Department of Biological Sciences Rm. 304 Biology Building University of Windsor 401 Sunset Ave. N9B 3P4 T: (519) 253-3000 Ext: 4755 -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: maker_bopts.log Type: text/x-log Size: 1413 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: maker_exe.log Type: text/x-log Size: 1309 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: maker_opts.log Type: text/x-log Size: 4712 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: OAC_Rex_AllPathsLG_Scaffolds_master_datastore_index.log Type: text/x-log Size: 2434293 bytes Desc: not available URL: From sbrubaker at solazyme.com Mon Jan 27 12:27:41 2014 From: sbrubaker at solazyme.com (Shane Brubaker) Date: Mon, 27 Jan 2014 19:27:41 +0000 Subject: [maker-devel] Introduction Message-ID: <61D01ACB70C1E141A150BA9F586D5BFA50EFC711@EXCHANGE-MB01.internal.solazyme.com> Hello, I'd like to introduce you to Mike D'Eletto. He is developing an open-source deep functional annotation pipeline to run numerous downstream program on predicted genes. I was wondering if this could be something interesting to bundle with MAKER. I met a person, I forget their name, at PAG 2014 who was involved with MAKER, and we discussed it briefly. I think it could be a beneficial idea. Thanks! - Shane Brubaker -------------- next part -------------- An HTML attachment was scrubbed... URL: From bmoore at genetics.utah.edu Mon Jan 27 18:54:41 2014 From: bmoore at genetics.utah.edu (Barry Moore) Date: Tue, 28 Jan 2014 01:54:41 +0000 Subject: [maker-devel] Introduction In-Reply-To: <61D01ACB70C1E141A150BA9F586D5BFA50EFC711@EXCHANGE-MB01.internal.solazyme.com> References: <61D01ACB70C1E141A150BA9F586D5BFA50EFC711@EXCHANGE-MB01.internal.solazyme.com> Message-ID: <6D6E50E3-0FAD-4E49-A1CA-6650C035E964@genetics.utah.edu> Thanks Shane and hi Mike. Sounds cool - is there a link to the tool? B Barry Moore Research Scientist Dept. Human Genetics University of Utah On Jan 27, 2014, at 12:30 PM, "Shane Brubaker" > wrote: Hello, I?d like to introduce you to Mike D?Eletto. He is developing an open-source deep functional annotation pipeline to run numerous downstream program on predicted genes. I was wondering if this could be something interesting to bundle with MAKER. I met a person, I forget their name, at PAG 2014 who was involved with MAKER, and we discussed it briefly. I think it could be a beneficial idea. Thanks! - Shane Brubaker _______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org -------------- next part -------------- An HTML attachment was scrubbed... URL: From jcjb at cam.ac.uk Tue Jan 28 05:14:03 2014 From: jcjb at cam.ac.uk (Jenny Barna) Date: Tue, 28 Jan 2014 12:14:03 +0000 (GMT) Subject: [maker-devel] WARNING: Multiple MAKER processes... Message-ID: We have had maker since 2010. Maker 2.10 and 2.11 compiled with mpich2 were and still are working with mpi as far as I can tell. These have a binary called mpi_maker. I have kept the same mpich2 installed to try to make sure things stay working. It has been picked up by subsequent maker builds. It is mpich2-1.2.1p1 . I have seen the posting by Marc P. Hoeppner on 10/26/13 about 'WARNING: Multiple MAKER processes have been started in the same directory.' which is the same warning I have had. Trying all my previous installations I now see this is happening in all 2.2? distributions I have. Versions 2.10/2.11 are not doing this. It is happening with 2.2?/2.30p where no separate mpi_maker binary is made. Trying new mpich 3.0.4 as advised in the posting by Marc has not worked. It appears to build but fails at once with severe mpi errors. Tests included with that mpi distro worked. I am aware the maker WARNING behaviour is indicative of mpi types having become mixed but have not been able to correct. Jenny Barna | jcjb at cam.ac.uk Bioinformatics and Computational Biology | computing.bio.cam.ac.uk Dept of Biochemistry | +44 1223 333644 80 Tennis Court Road, Cambridge, CB2 1GA, UK From sbrubaker at solazyme.com Tue Jan 28 10:34:16 2014 From: sbrubaker at solazyme.com (Shane Brubaker) Date: Tue, 28 Jan 2014 17:34:16 +0000 Subject: [maker-devel] Introduction In-Reply-To: <6D6E50E3-0FAD-4E49-A1CA-6650C035E964@genetics.utah.edu> References: <61D01ACB70C1E141A150BA9F586D5BFA50EFC711@EXCHANGE-MB01.internal.solazyme.com> <6D6E50E3-0FAD-4E49-A1CA-6650C035E964@genetics.utah.edu> Message-ID: <61D01ACB70C1E141A150BA9F586D5BFA50EFCB79@EXCHANGE-MB01.internal.solazyme.com> He has not put it out yet but can send you a link once it's ready. :) From: Barry Moore [mailto:bmoore at genetics.utah.edu] Sent: Monday, January 27, 2014 5:55 PM To: Shane Brubaker Cc: maker-devel at yandell-lab.org; Mike D'Eletto (mikedeletto at gmail.com) Subject: Re: [maker-devel] Introduction Thanks Shane and hi Mike. Sounds cool - is there a link to the tool? B Barry Moore Research Scientist Dept. Human Genetics University of Utah On Jan 27, 2014, at 12:30 PM, "Shane Brubaker" > wrote: Hello, I'd like to introduce you to Mike D'Eletto. He is developing an open-source deep functional annotation pipeline to run numerous downstream program on predicted genes. I was wondering if this could be something interesting to bundle with MAKER. I met a person, I forget their name, at PAG 2014 who was involved with MAKER, and we discussed it briefly. I think it could be a beneficial idea. Thanks! - Shane Brubaker _______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org -------------- next part -------------- An HTML attachment was scrubbed... URL: From carsonhh at gmail.com Tue Jan 28 10:58:03 2014 From: carsonhh at gmail.com (Carson Holt) Date: Tue, 28 Jan 2014 10:58:03 -0700 Subject: [maker-devel] WARNING: Multiple MAKER processes... In-Reply-To: References: Message-ID: Hi Jenny, There are three locations that are key to running with MPI. 1. The location of mpicc 2. the location of mpi.h 3. the location of mpiexec These files are common to all MPI flavors, but are incompatible between MPI flavor and version. For example, if you use mpicc to compile with the wrong mpi.h, it will fail. If you compile and then try and execute with the wrong mpiexec, it will fail. So you need to make sure all 3 are coming from the same version when running maker or any MPI program. A common mistake is to just call mpiexec direct on the command line. Your system may in fact call the wrong mpiexec when you do that (use ?which mpiexec? to see which one is being called when you just type mpiexec). Also when configuring MAKER, manually review the path to mpicc and mpi.h given during the ?perl Build.PL? configuration step to make sure they are coming from the same version and flavor of MPI. Also there is no mpi_maker. The standard 'maker' command will now be MPI enabled if you say ?yes' to the 'configure for MPI' question during the 'perl Build.PL' step of the install. I just installed MPICH3 and ran MAKER on a test job. Here is what I did step-by-step ?> #first install MPICH3 wget http://www.mpich.org/static/downloads/3.0.4/mpich-3.0.4.tar.gz tar -zxvf mpich-3.0.4.tar.gz cd mpich-3.0.4 #note that I configure with shared libraries enabled *this is not the default!! #also set prefix to wherever you want it installed ./configure --enable-shared=yes --prefix=/usr/local/mpich3 make make install #now cofigure MAKER cd /usr/local/maker/src perl Build.PL #say yes to MPI question #give full path to mpicc ?> /usr/local/mpich3/bin/mpicc #give full path to mpi.h containing directory ?> /usr/local/mpich3/include ./Build ./Build install #test using full paths to executables /usr/local/mpich3/bin/mpiexec -n 3 /usr/local/maker/bin/maker In addition, use MAKER 2.30. It has the best MPI performance of any version of MAKER. Also you can use OpenMPI rather than MPICH if you choose. It actually scales better than MPICH. The main difference is that you must set LD_PRELOAD to the location of libmpi.so before even trying to install MAKER. It must also be set before running MAKER (or any program that uses OpenMPI's shared libraries), so it's best just to add it to your ~/.bash_profile. (i.e. export LD_PRELOAD=/usr/local/openmpi/lib/libmpi.so). Note however that having this set will cause errors for MPICH, so be careful if switching back and forth between MPI flavors. Thanks, Carson On 1/28/14, 5:14 AM, "Jenny Barna" wrote: > >We have had maker since 2010. Maker 2.10 and 2.11 compiled with mpich2 >were and still are working with mpi as far as I can tell. These have >a binary called mpi_maker. > >I have kept the same mpich2 installed to try to make sure things stay >working. It has been picked up by subsequent maker builds. >It is mpich2-1.2.1p1 . > >I have seen the posting by Marc P. Hoeppner on 10/26/13 about >'WARNING: Multiple MAKER processes have been started in the same >directory.' which is the same warning I have had. > >Trying all my previous installations I now see this is happening in all >2.2? distributions I have. Versions 2.10/2.11 are not doing this. >It is happening with 2.2?/2.30p where no separate mpi_maker binary is >made. > >Trying new mpich 3.0.4 as advised in the posting by Marc has not worked. >It appears to build but fails at once with severe mpi errors. Tests >included >with that mpi distro worked. > >I am aware the maker WARNING behaviour is indicative of mpi types having >become mixed but have not been able to correct. > > > >Jenny Barna | jcjb at cam.ac.uk >Bioinformatics and Computational Biology | computing.bio.cam.ac.uk >Dept of Biochemistry | +44 1223 333644 >80 Tennis Court Road, Cambridge, CB2 1GA, UK > > >_______________________________________________ >maker-devel mailing list >maker-devel at box290.bluehost.com >http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org From barry.utah at gmail.com Wed Jan 29 20:58:37 2014 From: barry.utah at gmail.com (Barry Moore) Date: Wed, 29 Jan 2014 20:58:37 -0700 Subject: [maker-devel] Genome Annotation Library (Version 0.2.2) Message-ID: The Sequence Ontology is please to announce the release of the Genome Annotation Library (GAL) Version 0.2.2. GAL is a library of Perl modules that makes working with sequence features in GFF3/GVF files straight forward and intuitive. GAL also provides numerous parser classes for converting other formats to GFF3 and makes writing new parsers easy. GAL takes advantage of the ontology based relationships captured in SO-based sequence feature data to allow users to easily traverse the relationships between features in a GFF3 file. In addition to the GAL programming library many scripts utilizing the library are included as well as several stand-alone scripts for working with GFF/GVF and other genomic dataset. Updates in this version include: -Adding bin/footprint script -Adding gal_indexer script -Adding bin/gene_CDS_footprint script -New CPAN style html docs for GAL -Updates to gtf2gff3 -Adding warnings when mrna.pm can not return CDS or protein sequence -Added progress counter to Storage::SQLite::load_files -Adding --template option to gff_tool -Adding templates/gff_tool_gvf_example2.tt -Adding gal_remove_transcripts and gal_gff_tool -Adding fix_gvf function to bin/gff_tool -Added --clean to gal_protein_genes -Adding GAL::Base::open_file For more information, to access the GAL docs and to download GAL code please visit: http://www.sequenceontology.org/software/GAL.html Barry Moore Research Scientist Dept. of Human Genetics Dept. of Biomedical Informatics University of Utah Salt Lake City, UT 84112 -------------------------------------------- (801) 585-3543 -------------- next part -------------- An HTML attachment was scrubbed... URL: From S.M.Schmidt at uva.nl Thu Jan 30 07:30:18 2014 From: S.M.Schmidt at uva.nl (Schmidt, Sarah) Date: Thu, 30 Jan 2014 14:30:18 +0000 Subject: [maker-devel] Maker fails to annotate large contigs Message-ID: Dear Carson, When running maker on my genome assembly (roughly 60 Mb), it keeps failing the largest contigs with either error: DIED RANK 3:4:0:3 DIED COUNT 2 or DIED RANK 4:4:0:0 DIED COUNT 1 DIED RANK 4 DIED COUNT 1. Do you know what might be the problem? I am using Maker 2.28 with MPI support. Thanks in advance, Sarah -------------- next part -------------- An HTML attachment was scrubbed... URL: From carsonhh at gmail.com Thu Jan 30 08:04:28 2014 From: carsonhh at gmail.com (Carson Holt) Date: Thu, 30 Jan 2014 08:04:28 -0700 Subject: [maker-devel] Maker fails to annotate large contigs Message-ID: What are the errors from the STDERR printed to screen? That will tell you the specifics of why it is failing. Redirect to a file to capture it and I can take a look as well. Note you may need to set a higher number of retries to get it to run again. Thanks, Carson From: "Schmidt, Sarah" Date: Thursday, January 30, 2014 at 7:30 AM To: "maker-devel at yandell-lab.org" Subject: [maker-devel] Maker fails to annotate large contigs Dear Carson, When running maker on my genome assembly (roughly 60 Mb), it keeps failing the largest contigs with either error: DIED RANK 3:4:0:3 DIED COUNT 2 or DIED RANK 4:4:0:0 DIED COUNT 1 DIED RANK 4 DIED COUNT 1. Do you know what might be the problem? I am using Maker 2.28 with MPI support. Thanks in advance, Sarah _______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org -------------- next part -------------- An HTML attachment was scrubbed... URL: From darasappan at gmail.com Thu Jan 30 11:18:48 2014 From: darasappan at gmail.com (dhivya arasappan) Date: Thu, 30 Jan 2014 12:18:48 -0600 Subject: [maker-devel] maker annotation with cufflinks output Message-ID: <516896DE-1ACB-460B-9842-90E12CB72343@gmail.com> Hello, I am trying to annotate a 200 mb plant genome for which I have a very good assembly. I tried to denovo assemble RNA-seq data using trinity and ran maker using my genome assembly and the trinity results. I did not get as many transcripts as expected, around 10,000 transcripts. So, I decided to try a different approach. I did a genome assisted assembly of the RNA-seq data using tophat/cufflinks. This pipeline generated 21,000 genes, 29,000 transcripts. I then ran maker using my genome assembly and the cufflinks result. I get much less number of transcripts as a result. If cufflinks found 29000 transcripts by mapping to the genome, I'm confused as to why maker is not finding the same. Any suggestions would be appreciated. Thanks Dhivya From dence at genetics.utah.edu Thu Jan 30 13:51:10 2014 From: dence at genetics.utah.edu (Daniel Ence) Date: Thu, 30 Jan 2014 20:51:10 +0000 Subject: [maker-devel] maker annotation with cufflinks output In-Reply-To: <516896DE-1ACB-460B-9842-90E12CB72343@gmail.com> References: <516896DE-1ACB-460B-9842-90E12CB72343@gmail.com> Message-ID: Hi Dhivya, I think there a few numbers that could be helpful to understand what's happening here. How many transcripts did Trinity assembly the RNA-seq data into? Also, you had 29,000 transcripts from cufflinks, but fewer from MAKER when you gave it the cufflinks data. How many transcripts did MAKER identify with the cufflinks data? Did you still get more than the 10,000 transcripts that you found with just the Trinity data? A key part of MAKER's approach to genome annotation that might be affecting it's performance is that it only annotates a gene where there is both evidence (like your RNA-seq data) and an ab-initio prediction. If a prediction is unsupported by the evidence, then MAKER won't annotate a gene and if evidence aligns where there's no prediction, MAKER won't annotate a gene either. What ab-initio predictors are you using and have they been trained specific genome? You can force MAKER to automatically promote evidence alignments to a gene model by setting the est2genome option to 1, but that will usually give you many false positives. Try rerunning it with either the Trinity data or the Cufflinks data and with est2genome set to 1, and let us know how that affects the MAKER results. Thanks, Daniel Daniel Ence Graduate Student Eccles Institute of Human Genetics University of Utah 15 North 2030 East, Room 2100 Salt Lake City, UT 84112-5330 ________________________________________ From: maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of dhivya arasappan [darasappan at gmail.com] Sent: Thursday, January 30, 2014 11:18 AM To: maker-devel at yandell-lab.org Subject: [maker-devel] maker annotation with cufflinks output Hello, I am trying to annotate a 200 mb plant genome for which I have a very good assembly. I tried to denovo assemble RNA-seq data using trinity and ran maker using my genome assembly and the trinity results. I did not get as many transcripts as expected, around 10,000 transcripts. So, I decided to try a different approach. I did a genome assisted assembly of the RNA-seq data using tophat/cufflinks. This pipeline generated 21,000 genes, 29,000 transcripts. I then ran maker using my genome assembly and the cufflinks result. I get much less number of transcripts as a result. If cufflinks found 29000 transcripts by mapping to the genome, I'm confused as to why maker is not finding the same. Any suggestions would be appreciated. Thanks Dhivya _______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org From darasappan at gmail.com Thu Jan 30 14:00:07 2014 From: darasappan at gmail.com (dhivya arasappan) Date: Thu, 30 Jan 2014 15:00:07 -0600 Subject: [maker-devel] maker annotation with cufflinks output Message-ID: <8B185515-42FE-4EB2-8275-FE090541E49B@gmail.com> Hello, I am trying to annotate a 200 mb plant genome for which I have a very good assembly. I tried to denovo assemble RNA-seq data using trinity and ran maker using my genome assembly and the trinity results. I did not get as many transcripts as expected, around 10,000 transcripts. So, I decided to try a different approach. I did a genome assisted assembly of the RNA-seq data using tophat/cufflinks. This pipeline generated 21,000 genes, 29,000 transcripts. I then ran maker using my genome assembly and the cufflinks result. I get much less number of transcripts as a result. If cufflinks found 29000 transcripts by mapping to the genome, I'm confused as to why maker is not finding the same. Any suggestions would be appreciated. Thanks Dhivya From carsonhh at gmail.com Thu Jan 30 14:14:53 2014 From: carsonhh at gmail.com (Carson Holt) Date: Thu, 30 Jan 2014 14:14:53 -0700 Subject: [maker-devel] maker annotation with cufflinks output In-Reply-To: References: <516896DE-1ACB-460B-9842-90E12CB72343@gmail.com> Message-ID: What you get back from cufflinks should not necessarily be considered a transcript count, and you should always expect the count given by cufflinks to be high relative to assembly methods like trinity (especially in plants). This is because repetitive elements, spurious alignments, and pseudogenes will all inflate the count because it is an alignment based method which can be more sensitive but will also generate a lot of false positives. Fortunately the false positives will mostly be singe exon results and will be filtered out by maker. Also your mRNA-seq data from cufflinks will contribute to hints that can generate genes in the absence of an ab-intio gene prediction, but if the gene finder doesn?t think the hints make sense it will ignore them. So a lot of cufflinks results that don?t make sense with respect to ORF etc., will fall into the category of being ignored. In addition, you should try running your pipeline through CEGMA (http://korflab.ucdavis.edu/datasets/cegma/) to identify the expected completeness of the genome. For example if a genome of 70% completeness then you only expect to recover 70% of the genes. I believe CEGMA can also be run online from the iPlant discovery environment and iPlant atmosphere images. Also make sure you are including proteins with your MAKER run, as not all genes will be expressed, so mRNAseq will only capture a portion of the genes and that portion can be as low as 50%. Thanks, Carson On 1/30/14, 1:51 PM, "Daniel Ence" wrote: >Hi Dhivya, > >I think there a few numbers that could be helpful to understand what's >happening here. > >How many transcripts did Trinity assembly the RNA-seq data into? Also, >you had 29,000 transcripts from cufflinks, but fewer from MAKER when you >gave it the cufflinks data. How many transcripts did MAKER identify with >the cufflinks data? Did you still get more than the 10,000 transcripts >that you found with just the Trinity data? > >A key part of MAKER's approach to genome annotation that might be >affecting it's performance is that it only annotates a gene where there >is both evidence (like your RNA-seq data) and an ab-initio prediction. If >a prediction is unsupported by the evidence, then MAKER won't annotate a >gene and if evidence aligns where there's no prediction, MAKER won't >annotate a gene either. What ab-initio predictors are you using and have >they been trained specific genome? > >You can force MAKER to automatically promote evidence alignments to a >gene model by setting the est2genome option to 1, but that will usually >give you many false positives. > >Try rerunning it with either the Trinity data or the Cufflinks data and >with est2genome set to 1, and let us know how that affects the MAKER >results. > >Thanks, >Daniel > >Daniel Ence >Graduate Student >Eccles Institute of Human Genetics >University of Utah >15 North 2030 East, Room 2100 >Salt Lake City, UT 84112-5330 >________________________________________ >From: maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of >dhivya arasappan [darasappan at gmail.com] >Sent: Thursday, January 30, 2014 11:18 AM >To: maker-devel at yandell-lab.org >Subject: [maker-devel] maker annotation with cufflinks output > >Hello, > >I am trying to annotate a 200 mb plant genome for which I have a very >good assembly. > >I tried to denovo assemble RNA-seq data using trinity and ran maker >using my genome assembly and the trinity results. I did not get as >many transcripts as expected, around 10,000 transcripts. > >So, I decided to try a different approach. I did a genome assisted >assembly of the RNA-seq data using tophat/cufflinks. This pipeline >generated 21,000 genes, 29,000 transcripts. I then ran maker using my >genome assembly and the cufflinks result. I get much less number of >transcripts as a result. > >If cufflinks found 29000 transcripts by mapping to the genome, I'm >confused as to why maker is not finding the same. > >Any suggestions would be appreciated. > >Thanks >Dhivya > > >_______________________________________________ >maker-devel mailing list >maker-devel at box290.bluehost.com >http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org > >_______________________________________________ >maker-devel mailing list >maker-devel at box290.bluehost.com >http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org From ranjani at uga.edu Thu Jan 30 17:59:56 2014 From: ranjani at uga.edu (Sivaranjani Namasivayam) Date: Fri, 31 Jan 2014 00:59:56 +0000 Subject: [maker-devel] maker annotation with cufflinks output In-Reply-To: References: <516896DE-1ACB-460B-9842-90E12CB72343@gmail.com> , Message-ID: Hi All, This is a problem I have been having for quite some time; maker predicts much lower number of genes or proteins than in my evidence RNA-seq transcripts. My genome is not repetitive and is atleast 90% complete. I tried setting est2genome to 1, but that still doesn't seem to increase the predicted gene set too much. If I input ~13000 genes(21000 transcripts) as evidence I get predictions of ~5000 genes(6000 transcripts). I ran MAKER again with the transcripts that didn't have a gene model predicted in the first run, and this time MAKER predicted gene models for ~20-30% of those transcripts. Is there anything that can be done to increase the predicted gene count? Thanks, Ranjani ________________________________________ From: maker-devel on behalf of Carson Holt Sent: Thursday, January 30, 2014 4:14 PM To: Daniel Ence; dhivya arasappan; maker-devel at yandell-lab.org Subject: Re: [maker-devel] maker annotation with cufflinks output What you get back from cufflinks should not necessarily be considered a transcript count, and you should always expect the count given by cufflinks to be high relative to assembly methods like trinity (especially in plants). This is because repetitive elements, spurious alignments, and pseudogenes will all inflate the count because it is an alignment based method which can be more sensitive but will also generate a lot of false positives. Fortunately the false positives will mostly be singe exon results and will be filtered out by maker. Also your mRNA-seq data from cufflinks will contribute to hints that can generate genes in the absence of an ab-intio gene prediction, but if the gene finder doesn?t think the hints make sense it will ignore them. So a lot of cufflinks results that don?t make sense with respect to ORF etc., will fall into the category of being ignored. In addition, you should try running your pipeline through CEGMA (http://korflab.ucdavis.edu/datasets/cegma/) to identify the expected completeness of the genome. For example if a genome of 70% completeness then you only expect to recover 70% of the genes. I believe CEGMA can also be run online from the iPlant discovery environment and iPlant atmosphere images. Also make sure you are including proteins with your MAKER run, as not all genes will be expressed, so mRNAseq will only capture a portion of the genes and that portion can be as low as 50%. Thanks, Carson On 1/30/14, 1:51 PM, "Daniel Ence" wrote: >Hi Dhivya, > >I think there a few numbers that could be helpful to understand what's >happening here. > >How many transcripts did Trinity assembly the RNA-seq data into? Also, >you had 29,000 transcripts from cufflinks, but fewer from MAKER when you >gave it the cufflinks data. How many transcripts did MAKER identify with >the cufflinks data? Did you still get more than the 10,000 transcripts >that you found with just the Trinity data? > >A key part of MAKER's approach to genome annotation that might be >affecting it's performance is that it only annotates a gene where there >is both evidence (like your RNA-seq data) and an ab-initio prediction. If >a prediction is unsupported by the evidence, then MAKER won't annotate a >gene and if evidence aligns where there's no prediction, MAKER won't >annotate a gene either. What ab-initio predictors are you using and have >they been trained specific genome? > >You can force MAKER to automatically promote evidence alignments to a >gene model by setting the est2genome option to 1, but that will usually >give you many false positives. > >Try rerunning it with either the Trinity data or the Cufflinks data and >with est2genome set to 1, and let us know how that affects the MAKER >results. > >Thanks, >Daniel > >Daniel Ence >Graduate Student >Eccles Institute of Human Genetics >University of Utah >15 North 2030 East, Room 2100 >Salt Lake City, UT 84112-5330 >________________________________________ >From: maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of >dhivya arasappan [darasappan at gmail.com] >Sent: Thursday, January 30, 2014 11:18 AM >To: maker-devel at yandell-lab.org >Subject: [maker-devel] maker annotation with cufflinks output > >Hello, > >I am trying to annotate a 200 mb plant genome for which I have a very >good assembly. > >I tried to denovo assemble RNA-seq data using trinity and ran maker >using my genome assembly and the trinity results. I did not get as >many transcripts as expected, around 10,000 transcripts. > >So, I decided to try a different approach. I did a genome assisted >assembly of the RNA-seq data using tophat/cufflinks. This pipeline >generated 21,000 genes, 29,000 transcripts. I then ran maker using my >genome assembly and the cufflinks result. I get much less number of >transcripts as a result. > >If cufflinks found 29000 transcripts by mapping to the genome, I'm >confused as to why maker is not finding the same. > >Any suggestions would be appreciated. > >Thanks >Dhivya > > >_______________________________________________ >maker-devel mailing list >maker-devel at box290.bluehost.com >http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org > >_______________________________________________ >maker-devel mailing list >maker-devel at box290.bluehost.com >http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org _______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org From carsonhh at gmail.com Fri Jan 31 00:20:40 2014 From: carsonhh at gmail.com (Carson Holt) Date: Fri, 31 Jan 2014 00:20:40 -0700 Subject: [maker-devel] maker annotation with cufflinks output In-Reply-To: References: <516896DE-1ACB-460B-9842-90E12CB72343@gmail.com> Message-ID: So just a few suggestions. If you are getting fewer genes than you expect, that is usually an indication that the evidence provided is insufficient, the gene predictors need to be retrained, the repeat masking is insufficient, or the assembly has problems. Here is more explanation on each point: 1. In addition to any mRNA/EST data, you should provided full proteomes from a minimum of two species as closely related as possible, and perhaps a comprehensive database such as UniProt/Swissprot. Note that based on experience the comprehensive database cannot substitute for a related species proteome, they can complement it, but not substitute for it. So you need to supply full proteomes from something. mRNA/EST data is not sufficient by itself, so make sure you have enough protein evidence. 2. All models are ultimately generated by the predictors (maker doesn?t generate these), so care should be taken to train the predictors as best as possible. Also train at least two predictors (SNAP and Augustus are recommended). If they are both well trained, then they will be in general concordance with one another. If they are not well trained, then each program will produce very different models. So visually inspecting their concordance can give you an idea of if they need to be retrained. 3. More often than not, poor predictor performance is actually the result of repeat related complications. Many genomes that at first may seem repeat poor may actually contain novel repeats that can affect the performance of the gene predictors. If you are getting fewer genes than you expect or ab initio models are not in concordance from two independent predictors, run something like RepeatScout to generate species specific libraries. This may seem minor, but I have seen predictions go from apparently random to textbook perfect just by producing a species specific library of novel repeats. 4. You can?t have gene models if you don?t have open reading frames to translate through. Also gene predictors need sequence upstream and downstream of genes to work correctly, so if contigs are too short they won?t be useful for prediction even if the sum of the contigs is large enough to encompass the whole genome. In general any contig smaller than 10kb is not annotatable, so you should aim for as high an N50 value as possible. Annotating a new genome is sort of like a moving target. No two organisms are alike, so you usually have to to identify what deficiencies exist based on preliminary runs and then correct for them in subsequent runs. Thanks, Carson On 1/30/14, 5:59 PM, "Sivaranjani Namasivayam" wrote: >Hi All, > >This is a problem I have been having for quite some time; maker predicts >much lower number of genes or proteins than in my evidence RNA-seq >transcripts. My genome is not repetitive and is atleast 90% complete. > >I tried setting est2genome to 1, but that still doesn't seem to increase >the predicted gene set too much. If I input ~13000 genes(21000 >transcripts) as evidence I get predictions of ~5000 genes(6000 >transcripts). >I ran MAKER again with the transcripts that didn't have a gene model >predicted in the first run, and this time MAKER predicted gene models for >~20-30% of those transcripts. > >Is there anything that can be done to increase the predicted gene count? > >Thanks, >Ranjani >________________________________________ >From: maker-devel on behalf of >Carson Holt >Sent: Thursday, January 30, 2014 4:14 PM >To: Daniel Ence; dhivya arasappan; maker-devel at yandell-lab.org >Subject: Re: [maker-devel] maker annotation with cufflinks output > >What you get back from cufflinks should not necessarily be considered a >transcript count, and you should always expect the count given by >cufflinks to be high relative to assembly methods like trinity (especially >in plants). This is because repetitive elements, spurious alignments, and >pseudogenes will all inflate the count because it is an alignment based >method which can be more sensitive but will also generate a lot of false >positives. Fortunately the false positives will mostly be singe exon >results and will be filtered out by maker. Also your mRNA-seq data from >cufflinks will contribute to hints that can generate genes in the absence >of an ab-intio gene prediction, but if the gene finder doesn?t think the >hints make sense it will ignore them. So a lot of cufflinks results that >don?t make sense with respect to ORF etc., will fall into the category of >being ignored. > >In addition, you should try running your pipeline through CEGMA >(http://korflab.ucdavis.edu/datasets/cegma/) to identify the expected >completeness of the genome. For example if a genome of 70% completeness >then you only expect to recover 70% of the genes. I believe CEGMA can also >be run online from the iPlant discovery environment and iPlant atmosphere >images. Also make sure you are including proteins with your MAKER run, >as not all genes will be expressed, so mRNAseq will only capture a portion >of the genes and that portion can be as low as 50%. > >Thanks, >Carson > > >On 1/30/14, 1:51 PM, "Daniel Ence" wrote: > >>Hi Dhivya, >> >>I think there a few numbers that could be helpful to understand what's >>happening here. >> >>How many transcripts did Trinity assembly the RNA-seq data into? Also, >>you had 29,000 transcripts from cufflinks, but fewer from MAKER when you >>gave it the cufflinks data. How many transcripts did MAKER identify with >>the cufflinks data? Did you still get more than the 10,000 transcripts >>that you found with just the Trinity data? >> >>A key part of MAKER's approach to genome annotation that might be >>affecting it's performance is that it only annotates a gene where there >>is both evidence (like your RNA-seq data) and an ab-initio prediction. If >>a prediction is unsupported by the evidence, then MAKER won't annotate a >>gene and if evidence aligns where there's no prediction, MAKER won't >>annotate a gene either. What ab-initio predictors are you using and have >>they been trained specific genome? >> >>You can force MAKER to automatically promote evidence alignments to a >>gene model by setting the est2genome option to 1, but that will usually >>give you many false positives. >> >>Try rerunning it with either the Trinity data or the Cufflinks data and >>with est2genome set to 1, and let us know how that affects the MAKER >>results. >> >>Thanks, >>Daniel >> >>Daniel Ence >>Graduate Student >>Eccles Institute of Human Genetics >>University of Utah >>15 North 2030 East, Room 2100 >>Salt Lake City, UT 84112-5330 >>________________________________________ >>From: maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of >>dhivya arasappan [darasappan at gmail.com] >>Sent: Thursday, January 30, 2014 11:18 AM >>To: maker-devel at yandell-lab.org >>Subject: [maker-devel] maker annotation with cufflinks output >> >>Hello, >> >>I am trying to annotate a 200 mb plant genome for which I have a very >>good assembly. >> >>I tried to denovo assemble RNA-seq data using trinity and ran maker >>using my genome assembly and the trinity results. I did not get as >>many transcripts as expected, around 10,000 transcripts. >> >>So, I decided to try a different approach. I did a genome assisted >>assembly of the RNA-seq data using tophat/cufflinks. This pipeline >>generated 21,000 genes, 29,000 transcripts. I then ran maker using my >>genome assembly and the cufflinks result. I get much less number of >>transcripts as a result. >> >>If cufflinks found 29000 transcripts by mapping to the genome, I'm >>confused as to why maker is not finding the same. >> >>Any suggestions would be appreciated. >> >>Thanks >>Dhivya >> >> >>_______________________________________________ >>maker-devel mailing list >>maker-devel at box290.bluehost.com >>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org >> >>_______________________________________________ >>maker-devel mailing list >>maker-devel at box290.bluehost.com >>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org > > > >_______________________________________________ >maker-devel mailing list >maker-devel at box290.bluehost.com >http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org From darasappan at gmail.com Thu Jan 30 14:22:14 2014 From: darasappan at gmail.com (dhivya arasappan) Date: Thu, 30 Jan 2014 15:22:14 -0600 Subject: [maker-devel] maker annotation with cufflinks output In-Reply-To: References: <516896DE-1ACB-460B-9842-90E12CB72343@gmail.com> Message-ID: <3D1D5626-3130-4C4A-B808-FE2366A42048@gmail.com> Thank you for this information. Our server is currently down, so I'm unable to get you all the statistics you've asked for. Once the server is back up, I'll email again with more numbers But I can tell you that I did run cegma first and got around 92% completeness (full genes) and 98% completeness (partial genes). This is why I'm even more puzzled by maker results. Thanks again Dhivya On Jan 30, 2014, at 3:14 PM, Carson Holt wrote: > What you get back from cufflinks should not necessarily be > considered a > transcript count, and you should always expect the count given by > cufflinks to be high relative to assembly methods like trinity > (especially > in plants). This is because repetitive elements, spurious > alignments, and > pseudogenes will all inflate the count because it is an alignment > based > method which can be more sensitive but will also generate a lot of > false > positives. Fortunately the false positives will mostly be singe exon > results and will be filtered out by maker. Also your mRNA-seq data > from > cufflinks will contribute to hints that can generate genes in the > absence > of an ab-intio gene prediction, but if the gene finder doesn?t think > the > hints make sense it will ignore them. So a lot of cufflinks results > that > don?t make sense with respect to ORF etc., will fall into the > category of > being ignored. > > In addition, you should try running your pipeline through CEGMA > (http://korflab.ucdavis.edu/datasets/cegma/) to identify the expected > completeness of the genome. For example if a genome of 70% > completeness > then you only expect to recover 70% of the genes. I believe CEGMA > can also > be run online from the iPlant discovery environment and iPlant > atmosphere > images. Also make sure you are including proteins with your MAKER > run, > as not all genes will be expressed, so mRNAseq will only capture a > portion > of the genes and that portion can be as low as 50%. > > Thanks, > Carson > > > On 1/30/14, 1:51 PM, "Daniel Ence" wrote: > >> Hi Dhivya, >> >> I think there a few numbers that could be helpful to understand >> what's >> happening here. >> >> How many transcripts did Trinity assembly the RNA-seq data into? >> Also, >> you had 29,000 transcripts from cufflinks, but fewer from MAKER >> when you >> gave it the cufflinks data. How many transcripts did MAKER identify >> with >> the cufflinks data? Did you still get more than the 10,000 >> transcripts >> that you found with just the Trinity data? >> >> A key part of MAKER's approach to genome annotation that might be >> affecting it's performance is that it only annotates a gene where >> there >> is both evidence (like your RNA-seq data) and an ab-initio >> prediction. If >> a prediction is unsupported by the evidence, then MAKER won't >> annotate a >> gene and if evidence aligns where there's no prediction, MAKER won't >> annotate a gene either. What ab-initio predictors are you using and >> have >> they been trained specific genome? >> >> You can force MAKER to automatically promote evidence alignments to a >> gene model by setting the est2genome option to 1, but that will >> usually >> give you many false positives. >> >> Try rerunning it with either the Trinity data or the Cufflinks data >> and >> with est2genome set to 1, and let us know how that affects the MAKER >> results. >> >> Thanks, >> Daniel >> >> Daniel Ence >> Graduate Student >> Eccles Institute of Human Genetics >> University of Utah >> 15 North 2030 East, Room 2100 >> Salt Lake City, UT 84112-5330 >> ________________________________________ >> From: maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of >> dhivya arasappan [darasappan at gmail.com] >> Sent: Thursday, January 30, 2014 11:18 AM >> To: maker-devel at yandell-lab.org >> Subject: [maker-devel] maker annotation with cufflinks output >> >> Hello, >> >> I am trying to annotate a 200 mb plant genome for which I have a very >> good assembly. >> >> I tried to denovo assemble RNA-seq data using trinity and ran maker >> using my genome assembly and the trinity results. I did not get as >> many transcripts as expected, around 10,000 transcripts. >> >> So, I decided to try a different approach. I did a genome assisted >> assembly of the RNA-seq data using tophat/cufflinks. This pipeline >> generated 21,000 genes, 29,000 transcripts. I then ran maker using >> my >> genome assembly and the cufflinks result. I get much less number of >> transcripts as a result. >> >> If cufflinks found 29000 transcripts by mapping to the genome, I'm >> confused as to why maker is not finding the same. >> >> Any suggestions would be appreciated. >> >> Thanks >> Dhivya >> >> >> _______________________________________________ >> maker-devel mailing list >> maker-devel at box290.bluehost.com >> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org >> >> _______________________________________________ >> maker-devel mailing list >> maker-devel at box290.bluehost.com >> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org > > From sujaikumar at gmail.com Fri Jan 31 01:39:26 2014 From: sujaikumar at gmail.com (Sujai) Date: Fri, 31 Jan 2014 08:39:26 +0000 Subject: [maker-devel] maker annotation with cufflinks output In-Reply-To: References: <516896DE-1ACB-460B-9842-90E12CB72343@gmail.com> Message-ID: Many thanks, Carson - for this fabulous post describing general principles. You've hinted at some of these tips in other posts, but it's great to have them in one place. Thanks especially for the kinds of things that make a big difference (point 3 below). More such tips always welcome! Best wishes, and thanks for an amazing piece of kit. - Sujai On 31 January 2014 07:20, Carson Holt wrote: > So just a few suggestions. If you are getting fewer genes than you expect, > that is usually an indication that the evidence provided is insufficient, > the gene predictors need to be retrained, the repeat masking is > insufficient, or the assembly has problems. > > Here is more explanation on each point: > > 1. In addition to any mRNA/EST data, you should provided full proteomes > from a minimum of two species as closely related as possible, and perhaps > a comprehensive database such as UniProt/Swissprot. Note that based on > experience the comprehensive database cannot substitute for a related > species proteome, they can complement it, but not substitute for it. So > you need to supply full proteomes from something. mRNA/EST data is not > sufficient by itself, so make sure you have enough protein evidence. > > 2. All models are ultimately generated by the predictors (maker doesn't > generate these), so care should be taken to train the predictors as best > as possible. Also train at least two predictors (SNAP and Augustus are > recommended). If they are both well trained, then they will be in general > concordance with one another. If they are not well trained, then each > program will produce very different models. So visually inspecting their > concordance can give you an idea of if they need to be retrained. > > 3. More often than not, poor predictor performance is actually the result > of repeat related complications. Many genomes that at first may seem > repeat poor may actually contain novel repeats that can affect the > performance of the gene predictors. If you are getting fewer genes than > you expect or ab initio models are not in concordance from two independent > predictors, run something like RepeatScout to generate species specific > libraries. This may seem minor, but I have seen predictions go from > apparently random to textbook perfect just by producing a species specific > library of novel repeats. > > 4. You can't have gene models if you don't have open reading frames to > translate through. Also gene predictors need sequence upstream and > downstream of genes to work correctly, so if contigs are too short they > won't be useful for prediction even if the sum of the contigs is large > enough to encompass the whole genome. In general any contig smaller than > 10kb is not annotatable, so you should aim for as high an N50 value as > possible. > > > Annotating a new genome is sort of like a moving target. No two organisms > are alike, so you usually have to to identify what deficiencies exist > based on preliminary runs and then correct for them in subsequent runs. > > Thanks, > Carson > > > > On 1/30/14, 5:59 PM, "Sivaranjani Namasivayam" wrote: > >>Hi All, >> >>This is a problem I have been having for quite some time; maker predicts >>much lower number of genes or proteins than in my evidence RNA-seq >>transcripts. My genome is not repetitive and is atleast 90% complete. >> >>I tried setting est2genome to 1, but that still doesn't seem to increase >>the predicted gene set too much. If I input ~13000 genes(21000 >>transcripts) as evidence I get predictions of ~5000 genes(6000 >>transcripts). >>I ran MAKER again with the transcripts that didn't have a gene model >>predicted in the first run, and this time MAKER predicted gene models for >>~20-30% of those transcripts. >> >>Is there anything that can be done to increase the predicted gene count? >> >>Thanks, >>Ranjani >>________________________________________ >>From: maker-devel on behalf of >>Carson Holt >>Sent: Thursday, January 30, 2014 4:14 PM >>To: Daniel Ence; dhivya arasappan; maker-devel at yandell-lab.org >>Subject: Re: [maker-devel] maker annotation with cufflinks output >> >>What you get back from cufflinks should not necessarily be considered a >>transcript count, and you should always expect the count given by >>cufflinks to be high relative to assembly methods like trinity (especially >>in plants). This is because repetitive elements, spurious alignments, and >>pseudogenes will all inflate the count because it is an alignment based >>method which can be more sensitive but will also generate a lot of false >>positives. Fortunately the false positives will mostly be singe exon >>results and will be filtered out by maker. Also your mRNA-seq data from >>cufflinks will contribute to hints that can generate genes in the absence >>of an ab-intio gene prediction, but if the gene finder doesn't think the >>hints make sense it will ignore them. So a lot of cufflinks results that >>don't make sense with respect to ORF etc., will fall into the category of >>being ignored. >> >>In addition, you should try running your pipeline through CEGMA >>(http://korflab.ucdavis.edu/datasets/cegma/) to identify the expected >>completeness of the genome. For example if a genome of 70% completeness >>then you only expect to recover 70% of the genes. I believe CEGMA can also >>be run online from the iPlant discovery environment and iPlant atmosphere >>images. Also make sure you are including proteins with your MAKER run, >>as not all genes will be expressed, so mRNAseq will only capture a portion >>of the genes and that portion can be as low as 50%. >> >>Thanks, >>Carson >> >> >>On 1/30/14, 1:51 PM, "Daniel Ence" wrote: >> >>>Hi Dhivya, >>> >>>I think there a few numbers that could be helpful to understand what's >>>happening here. >>> >>>How many transcripts did Trinity assembly the RNA-seq data into? Also, >>>you had 29,000 transcripts from cufflinks, but fewer from MAKER when you >>>gave it the cufflinks data. How many transcripts did MAKER identify with >>>the cufflinks data? Did you still get more than the 10,000 transcripts >>>that you found with just the Trinity data? >>> >>>A key part of MAKER's approach to genome annotation that might be >>>affecting it's performance is that it only annotates a gene where there >>>is both evidence (like your RNA-seq data) and an ab-initio prediction. If >>>a prediction is unsupported by the evidence, then MAKER won't annotate a >>>gene and if evidence aligns where there's no prediction, MAKER won't >>>annotate a gene either. What ab-initio predictors are you using and have >>>they been trained specific genome? >>> >>>You can force MAKER to automatically promote evidence alignments to a >>>gene model by setting the est2genome option to 1, but that will usually >>>give you many false positives. >>> >>>Try rerunning it with either the Trinity data or the Cufflinks data and >>>with est2genome set to 1, and let us know how that affects the MAKER >>>results. >>> >>>Thanks, >>>Daniel >>> >>>Daniel Ence >>>Graduate Student >>>Eccles Institute of Human Genetics >>>University of Utah >>>15 North 2030 East, Room 2100 >>>Salt Lake City, UT 84112-5330 >>>________________________________________ >>>From: maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of >>>dhivya arasappan [darasappan at gmail.com] >>>Sent: Thursday, January 30, 2014 11:18 AM >>>To: maker-devel at yandell-lab.org >>>Subject: [maker-devel] maker annotation with cufflinks output >>> >>>Hello, >>> >>>I am trying to annotate a 200 mb plant genome for which I have a very >>>good assembly. >>> >>>I tried to denovo assemble RNA-seq data using trinity and ran maker >>>using my genome assembly and the trinity results. I did not get as >>>many transcripts as expected, around 10,000 transcripts. >>> >>>So, I decided to try a different approach. I did a genome assisted >>>assembly of the RNA-seq data using tophat/cufflinks. This pipeline >>>generated 21,000 genes, 29,000 transcripts. I then ran maker using my >>>genome assembly and the cufflinks result. I get much less number of >>>transcripts as a result. >>> >>>If cufflinks found 29000 transcripts by mapping to the genome, I'm >>>confused as to why maker is not finding the same. >>> >>>Any suggestions would be appreciated. >>> >>>Thanks >>>Dhivya >>> >>> >>>_______________________________________________ >>>maker-devel mailing list >>>maker-devel at box290.bluehost.com >>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org >>> >>>_______________________________________________ >>>maker-devel mailing list >>>maker-devel at box290.bluehost.com >>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org >> >> >> >>_______________________________________________ >>maker-devel mailing list >>maker-devel at box290.bluehost.com >>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org > > > > _______________________________________________ > maker-devel mailing list > maker-devel at box290.bluehost.com > http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org From sbrubaker at solazyme.com Wed Jan 8 11:10:30 2014 From: sbrubaker at solazyme.com (Shane Brubaker) Date: Wed, 8 Jan 2014 18:10:30 +0000 Subject: [maker-devel] Plastid annotation Message-ID: <61D01ACB70C1E141A150BA9F586D5BFA50EF7ADE@EXCHANGE-MB01.internal.solazyme.com> Hi, we are embarking on a project to annotate several plastids. We want to do all the work in-house though (i.e. we don't want to use a web service) and we would like to use MAKER if possible. As you know the plastid is essentially bacterial, so I get the impression that it would not be appropriate to use Augustus or SNAP on it, is that correct? Is it possible instead to use Glimmer within MAKER? I was wondering if anyone has suggestions on 1) how to use MAKER with organellar genomes and 2) other general organellar annotation piplelines that people have found useful (and useable) that are downloadable to a local installation. Thanks, Shane Brubaker -------------- next part -------------- An HTML attachment was scrubbed... URL: From michael.s.campbell1 at gmail.com Wed Jan 8 13:51:03 2014 From: michael.s.campbell1 at gmail.com (Michael Campbell) Date: Wed, 8 Jan 2014 13:51:03 -0700 Subject: [maker-devel] FW: extract repeats from maker output In-Reply-To: <7A60AB257EFF2B48B1F4C814817EA05365EDC871@mxb2.hg.genetics.utah.edu> References: <7A60AB257EFF2B48B1F4C814817EA05365EDC871@mxb2.hg.genetics.utah.edu> Message-ID: Hi Stefan, MAKER does write the repeatmasker output to the final gff3 file. However, to save space and prevent redundancy in the case of nested or overlapping repeats the repeat regions are collapsed and named after the longest repeat contributing to the repeat region. This means that the portion of the genome being masked is easy to calculate, but the length of the masked regions reported in the MAKER output will non always represent the length of individual repetitive elements. To get the true length distribution you could run repeat masker on the genome outside of MAKER or look for the repeatmasker output in the void directories in the datastore for each scaffold. Also make sure that you are using the most recent version of MAKER. There was one recent bug fix that affected the repeatmaksker output that was written to the gff3 file that resulted, in some cases, in an underestimation of the portion of the genome that was masked prior to annotation. I've copied this to the MAKER dev list just in case anyone else has additional insights. Mike > > Dear Mark Yandell, > > I wanted to ask if it's possible to extract a file with all repeats found > from the maker output? > > I would like to see how much of the genome is repeats and check their > lengths distribution. > > All the best, > Stefan Prost > > > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From dence at genetics.utah.edu Wed Jan 8 16:44:10 2014 From: dence at genetics.utah.edu (Daniel Ence) Date: Wed, 8 Jan 2014 23:44:10 +0000 Subject: [maker-devel] Plastid annotation In-Reply-To: <61D01ACB70C1E141A150BA9F586D5BFA50EF7ADE@EXCHANGE-MB01.internal.solazyme.com> References: <61D01ACB70C1E141A150BA9F586D5BFA50EF7ADE@EXCHANGE-MB01.internal.solazyme.com> Message-ID: Hi Shane, I'm not familiar with anyone using MAKER to annotate organellar genomes. My guess is that there might be a more specialized pipeline for this purpose. Glimmer isn't integrated into MAKER, but if you can get a gff3 file from it, you can pass those predictions to MAKER. The only difference between passing predictions and running it within MAKER is that MAKER will generate and pass "hints" based on the blast alignments to its internal predictors. MAKER can't do that with predictions generated externally. Thanks, Daniel Daniel Ence Graduate Student Eccles Institute of Human Genetics University of Utah 15 North 2030 East, Room 2100 Salt Lake City, UT 84112-5330 ________________________________ From: maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of Shane Brubaker [sbrubaker at solazyme.com] Sent: Wednesday, January 08, 2014 11:10 AM To: maker-devel at yandell-lab.org Cc: Aren Ewing Subject: [maker-devel] Plastid annotation Hi, we are embarking on a project to annotate several plastids. We want to do all the work in-house though (i.e. we don?t want to use a web service) and we would like to use MAKER if possible. As you know the plastid is essentially bacterial, so I get the impression that it would not be appropriate to use Augustus or SNAP on it, is that correct? Is it possible instead to use Glimmer within MAKER? I was wondering if anyone has suggestions on 1) how to use MAKER with organellar genomes and 2) other general organellar annotation piplelines that people have found useful (and useable) that are downloadable to a local installation. Thanks, Shane Brubaker -------------- next part -------------- An HTML attachment was scrubbed... URL: From sbrubaker at solazyme.com Wed Jan 8 16:47:30 2014 From: sbrubaker at solazyme.com (Shane Brubaker) Date: Wed, 8 Jan 2014 23:47:30 +0000 Subject: [maker-devel] Plastid annotation In-Reply-To: References: <61D01ACB70C1E141A150BA9F586D5BFA50EF7ADE@EXCHANGE-MB01.internal.solazyme.com> Message-ID: <61D01ACB70C1E141A150BA9F586D5BFA50EF7E00@EXCHANGE-MB01.internal.solazyme.com> Thanks very much for the information! From: Daniel Ence [mailto:dence at genetics.utah.edu] Sent: Wednesday, January 08, 2014 3:44 PM To: Shane Brubaker; maker-devel at yandell-lab.org Cc: Aren Ewing Subject: RE: Plastid annotation Hi Shane, I'm not familiar with anyone using MAKER to annotate organellar genomes. My guess is that there might be a more specialized pipeline for this purpose. Glimmer isn't integrated into MAKER, but if you can get a gff3 file from it, you can pass those predictions to MAKER. The only difference between passing predictions and running it within MAKER is that MAKER will generate and pass "hints" based on the blast alignments to its internal predictors. MAKER can't do that with predictions generated externally. Thanks, Daniel Daniel Ence Graduate Student Eccles Institute of Human Genetics University of Utah 15 North 2030 East, Room 2100 Salt Lake City, UT 84112-5330 ________________________________ From: maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of Shane Brubaker [sbrubaker at solazyme.com] Sent: Wednesday, January 08, 2014 11:10 AM To: maker-devel at yandell-lab.org Cc: Aren Ewing Subject: [maker-devel] Plastid annotation Hi, we are embarking on a project to annotate several plastids. We want to do all the work in-house though (i.e. we don't want to use a web service) and we would like to use MAKER if possible. As you know the plastid is essentially bacterial, so I get the impression that it would not be appropriate to use Augustus or SNAP on it, is that correct? Is it possible instead to use Glimmer within MAKER? I was wondering if anyone has suggestions on 1) how to use MAKER with organellar genomes and 2) other general organellar annotation piplelines that people have found useful (and useable) that are downloadable to a local installation. Thanks, Shane Brubaker -------------- next part -------------- An HTML attachment was scrubbed... URL: From amelia.ireland at gmod.org Thu Jan 9 14:15:03 2014 From: amelia.ireland at gmod.org (Amelia Ireland) Date: Thu, 9 Jan 2014 13:15:03 -0800 Subject: [maker-devel] GMOD in San Diego: PAG XXII and GMOD meeting Message-ID: Greetings, GMODders! If you're going to be in San Diego for PAG next week, we've put together a guide to the GMOD sessions at PAG, as well as a selection of content from GMOD users. You can find it on the GMOD website at http://gmod.org/wiki/PAG Please come along to the GMOD sessions and poster and introduce yourself and your project -- we would love to hear what you're doing with GMOD software! If you want to come to the GMOD Community Meeting on Jan 16 and 17, there is still time to register, but please do so ASAP. The agenda and registration link are on the wiki: http://gmod.org/wiki/Jan_2014_GMOD_Meeting Thanks! -- Amelia Ireland GMOD Community Support Generic Model Organism Database project http://gmod.org || @gmodproject -------------- next part -------------- An HTML attachment was scrubbed... URL: From mikael.durling at slu.se Fri Jan 10 02:48:49 2014 From: mikael.durling at slu.se (=?iso-8859-1?Q?Mikael_Brandstr=F6m_Durling?=) Date: Fri, 10 Jan 2014 09:48:49 +0000 Subject: [maker-devel] ncRNA support in maker Message-ID: Hi Carson and other maker developers, I was reading the source code of the latest maker release and noted several references to ncRNAs, snoscan and trnascan. Can these be incorporated into the normal annotation workflow? If so, are there any instructions available for that? best regards, Mikael Durling -------------- next part -------------- A non-text attachment was scrubbed... Name: signature.asc Type: application/pgp-signature Size: 496 bytes Desc: Message signed with OpenPGP using GPGMail URL: From carsonhh at gmail.com Fri Jan 10 14:03:25 2014 From: carsonhh at gmail.com (Carson Holt) Date: Fri, 10 Jan 2014 14:03:25 -0700 Subject: [maker-devel] ncRNA support in maker Message-ID: Hi Mikael, The options are part of the new MAKER-P integration (http://www.plantphysiol.org/content/early/2013/12/06/pp.113.230144.abstrac t). Additional documentation/tutorials will be forthcoming - probably in a nice wiki page as part of the upcoming GMOD Malaysia courses in February or alternatively with the annual GMOD summer school. The tRNA option is easy enough to turn on (just set trna=1 in the maker_opts.ctl file). Thanks, Carson On 1/10/14, 2:48 AM, "Mikael Brandstr?m Durling" wrote: >Hi Carson and other maker developers, > >I was reading the source code of the latest maker release and noted >several references to ncRNAs, snoscan and trnascan. Can these be >incorporated into the normal annotation workflow? If so, are there any >instructions available for that? > >best regards, >Mikael Durling >_______________________________________________ >maker-devel mailing list >maker-devel at box290.bluehost.com >http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org From saneasheikh at gmail.com Mon Jan 13 02:17:25 2014 From: saneasheikh at gmail.com (Sanea Sheikh) Date: Mon, 13 Jan 2014 10:17:25 +0100 Subject: [maker-devel] Problem with re-annotation Message-ID: Hello I am using Maker to annotate a genome for which I only have EST data and some protein data. I ran Maker once using this EST and protein data (est2genome=1, protein2genome=1). I had the Maker output. I combined all the GFF files for all the contigs. I used the combined GFF file to train SNAP which gave me a .hmm file. Now I modified the Maker opts control file. I provided the hmm file in snap_hmm. I set est2genome=0 and protein2genome=0. I ran Maker again assuming that now I have trained the gene predictor and I would have better annotations. But now the output file that I get does not have Maker annotation. I have attached the control files and the output file for the re-run so you can have a look and let me know what I am doing wrong in order to re-annotate the genome using the output from the previous run. Sanea -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: concatenated_gff_run1.gff Type: application/octet-stream Size: 8158526 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: Run1maker_opts.ctl Type: application/octet-stream Size: 4684 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: Run2maker_opts.ctl Type: application/octet-stream Size: 4749 bytes Desc: not available URL: From charlos9 at gmail.com Mon Jan 13 13:00:12 2014 From: charlos9 at gmail.com (carlos vargas) Date: Mon, 13 Jan 2014 21:00:12 +0100 Subject: [maker-devel] Problem installing maker Message-ID: Hello, I have been trying to install maker but I've been facing several issues. After installing all of the prerequisites I ran perl Build.PL and ./Build install. No issues were detected. Afterwards I tried to test maker by simply executing maker -h and got the following error: Can't locate MAKER/ConfigData.pm in @INC (@INC contains: ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42. I found a similar thread which suggested reinstalling (which I did) but I still face the same issue. The full messages are below. Thank you for your help! Carlos ~/software/maker/src$ sudo perl Build.PL MAKER supports distributed parallelization via MPI. Would you like to configure MAKER for MPI (This requires that you have an MPI client installed)? [N ] N Would you like to install the web interface to MAKER (MWAS) on this machine This requires that you be logged in as root or use sudo for './Build install'? [N ] N Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'MAKER' version '2.3' The file 'Build' has been created for you to finish installing MAKER. ============================================================================== STATUS MAKER 2.3 ============================================================================== PERL Dependencies: VERIFIED External Programs: VERIFIED External C Libraries: VERIFIED MPI SUPPORT: DISABLED MWAS Web Interface: DISABLED MAKER PACKAGE: CONFIGURATION OK Important Commands: ./Build installdeps #installs missing PERL dependencies ./Build installexes #installs all missing external programs ./Build install #installs MAKER ./Build status #Shows this status menu Other Commands: ./Build repeatmasker #installs RepeatMasker (asks for RepBase) ./Build blast #installs BLAST (NCBI BLAST+) ./Build exonerate #installs Exonerate (v2 on UNIX / v1 on Mac OSX) ./Build snap #installs SNAP ./Build augustus #installs Augustus ./Build apollo #installs Apollo ./Build gbrowse #installs GBrowse (must be root) ./Build jbrowse #installs JBrowse (MAKER copy, not web accecible) ./Build webapollo #installs WebApollo (use maker2wap to create DBs) ./Build mpich2 #installs MPICH2 (but manual install recommended) ~/software/maker/src$ sudo ./Build install Building MAKER Installing MAKER... Building MAKER Installing ~/software/maker/src/../perl/lib/MAKER/ConfigData.pm ~/software/maker/src$ maker -h Can't locate MAKER/ConfigData.pm in @INC (@INC contains: ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42. -------------- next part -------------- An HTML attachment was scrubbed... URL: From carsonhh at gmail.com Mon Jan 13 13:06:13 2014 From: carsonhh at gmail.com (Carson Holt) Date: Mon, 13 Jan 2014 12:06:13 -0800 Subject: [maker-devel] Problem installing maker In-Reply-To: References: Message-ID: You are running maker from .../maker/src/bin/. That is just the source code. The scripts for execution will be in .../maker/bin/ after installation. You need to use those. Thanks, Carson > On Jan 13, 2014, at 12:00 PM, carlos vargas wrote: > > Hello, > > I have been trying to install maker but I've been facing several issues. After installing all of the prerequisites I ran perl Build.PL and ./Build install. No issues were detected. Afterwards I tried to test maker by simply executing maker -h and got the following error: > > Can't locate MAKER/ConfigData.pm in @INC (@INC contains: ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. > BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42. > > I found a similar thread which suggested reinstalling (which I did) but I still face the same issue. The full messages are below. > > > Thank you for your help! > > Carlos > > > ~/software/maker/src$ sudo perl Build.PL > > MAKER supports distributed parallelization via MPI. > Would you like to configure MAKER for MPI (This > requires that you have an MPI client installed)? [N ] > N > > Would you like to install the web interface to MAKER (MWAS) on this machine > This requires that you be logged in as root or use sudo for './Build install'? [N ] > N > Created MYMETA.yml and MYMETA.json > Creating new 'Build' script for 'MAKER' version '2.3' > > > The file 'Build' has been created for you to finish installing MAKER. > > > ============================================================================== > STATUS MAKER 2.3 > ============================================================================== > PERL Dependencies: VERIFIED > External Programs: VERIFIED > External C Libraries: VERIFIED > MPI SUPPORT: DISABLED > MWAS Web Interface: DISABLED > MAKER PACKAGE: CONFIGURATION OK > > > Important Commands: > ./Build installdeps #installs missing PERL dependencies > ./Build installexes #installs all missing external programs > ./Build install #installs MAKER > ./Build status #Shows this status menu > > Other Commands: > ./Build repeatmasker #installs RepeatMasker (asks for RepBase) > ./Build blast #installs BLAST (NCBI BLAST+) > ./Build exonerate #installs Exonerate (v2 on UNIX / v1 on Mac OSX) > ./Build snap #installs SNAP > ./Build augustus #installs Augustus > ./Build apollo #installs Apollo > ./Build gbrowse #installs GBrowse (must be root) > ./Build jbrowse #installs JBrowse (MAKER copy, not web accecible) > ./Build webapollo #installs WebApollo (use maker2wap to create DBs) > ./Build mpich2 #installs MPICH2 (but manual install recommended) > > ~/software/maker/src$ sudo ./Build install > Building MAKER > Installing MAKER... > Building MAKER > Installing ~/software/maker/src/../perl/lib/MAKER/ConfigData.pm > > ~/software/maker/src$ maker -h > Can't locate MAKER/ConfigData.pm in @INC (@INC contains: ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. > BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42. > > > _______________________________________________ > maker-devel mailing list > maker-devel at box290.bluehost.com > http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org From barry.utah at gmail.com Mon Jan 13 14:21:22 2014 From: barry.utah at gmail.com (Barry Moore) Date: Mon, 13 Jan 2014 14:21:22 -0700 Subject: [maker-devel] Problem installing maker In-Reply-To: References: Message-ID: Hi Carlos, Did you run ./Build install? If not do that first and then you want to run the copy of maker in ~/software/maker/bin/maker. B On Jan 13, 2014, at 1:00 PM, carlos vargas wrote: > Hello, > > I have been trying to install maker but I've been facing several issues. After installing all of the prerequisites I ran perl Build.PL and ./Build install. No issues were detected. Afterwards I tried to test maker by simply executing maker -h and got the following error: > > Can't locate MAKER/ConfigData.pm in @INC (@INC contains: ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. > BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42. > > I found a similar thread which suggested reinstalling (which I did) but I still face the same issue. The full messages are below. > > > Thank you for your help! > > Carlos > > > ~/software/maker/src$ sudo perl Build.PL > > MAKER supports distributed parallelization via MPI. > Would you like to configure MAKER for MPI (This > requires that you have an MPI client installed)? [N ] > N > > Would you like to install the web interface to MAKER (MWAS) on this machine > This requires that you be logged in as root or use sudo for './Build install'? [N ] > N > Created MYMETA.yml and MYMETA.json > Creating new 'Build' script for 'MAKER' version '2.3' > > > The file 'Build' has been created for you to finish installing MAKER. > > > ============================================================================== > STATUS MAKER 2.3 > ============================================================================== > PERL Dependencies: VERIFIED > External Programs: VERIFIED > External C Libraries: VERIFIED > MPI SUPPORT: DISABLED > MWAS Web Interface: DISABLED > MAKER PACKAGE: CONFIGURATION OK > > > Important Commands: > ./Build installdeps #installs missing PERL dependencies > ./Build installexes #installs all missing external programs > ./Build install #installs MAKER > ./Build status #Shows this status menu > > Other Commands: > ./Build repeatmasker #installs RepeatMasker (asks for RepBase) > ./Build blast #installs BLAST (NCBI BLAST+) > ./Build exonerate #installs Exonerate (v2 on UNIX / v1 on Mac OSX) > ./Build snap #installs SNAP > ./Build augustus #installs Augustus > ./Build apollo #installs Apollo > ./Build gbrowse #installs GBrowse (must be root) > ./Build jbrowse #installs JBrowse (MAKER copy, not web accecible) > ./Build webapollo #installs WebApollo (use maker2wap to create DBs) > ./Build mpich2 #installs MPICH2 (but manual install recommended) > > ~/software/maker/src$ sudo ./Build install > Building MAKER > Installing MAKER... > Building MAKER > Installing ~/software/maker/src/../perl/lib/MAKER/ConfigData.pm > > ~/software/maker/src$ maker -h > Can't locate MAKER/ConfigData.pm in @INC (@INC contains: ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. > BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42. > > > _______________________________________________ > maker-devel mailing list > maker-devel at box290.bluehost.com > http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org Barry Moore Research Scientist Dept. of Human Genetics University of Utah Salt Lake City, UT 84112 -------------------------------------------- (801) 585-3543 -------------- next part -------------- An HTML attachment was scrubbed... URL: From carsonhh at gmail.com Mon Jan 13 17:39:19 2014 From: carsonhh at gmail.com (Carson Holt) Date: Mon, 13 Jan 2014 17:39:19 -0700 Subject: [maker-devel] Problem with re-annotation In-Reply-To: References: Message-ID: Hi Sanea, There are no snap calls in your results. It?s as if SNAP never even ran. Did you capture STDERR from your second run? If so can you send it to me. I just want to see if it even shows SNAP as having run in the progress reports. Thanks, Carson From: Sanea Sheikh Date: Monday, January 13, 2014 at 2:17 AM To: Subject: [maker-devel] Problem with re-annotation Hello I am using Maker to annotate a genome for which I only have EST data and some protein data. I ran Maker once using this EST and protein data (est2genome=1, protein2genome=1). I had the Maker output. I combined all the GFF files for all the contigs. I used the combined GFF file to train SNAP which gave me a .hmm file. Now I modified the Maker opts control file. I provided the hmm file in snap_hmm. I set est2genome=0 and protein2genome=0. I ran Maker again assuming that now I have trained the gene predictor and I would have better annotations. But now the output file that I get does not have Maker annotation. I have attached the control files and the output file for the re-run so you can have a look and let me know what I am doing wrong in order to re-annotate the genome using the output from the previous run. Sanea _______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org -------------- next part -------------- An HTML attachment was scrubbed... URL: From carson.holt at genetics.utah.edu Tue Jan 14 11:14:00 2014 From: carson.holt at genetics.utah.edu (Carson Holt) Date: Tue, 14 Jan 2014 18:14:00 +0000 Subject: [maker-devel] Issues regarding maker In-Reply-To: <7A60AB257EFF2B48B1F4C814817EA05365EE0D6E@mxb2.hg.genetics.utah.edu> References: <1766640308.998.1389701368895.JavaMail.root@mail.icgeb.res.in> <7A60AB257EFF2B48B1F4C814817EA05365EE0D6E@mxb2.hg.genetics.utah.edu> Message-ID: Hi Nandita, Check that you do not have an error like an extra space or character when you add it to your PATH. Also you must either ?source? the modified ./bashrc or restart your terminal for changes to the PATH environmental variable to take effect. You can check the contents of your active PATH variable by doing 'echo $PATH' on the command line. Also check that you finished the installation procedure. If so the 'maker' script should be in the .../maker/bin/ directory. Make sure it is there, and make sure it is the .../maker/bin/ directory and not the .../maker/ or .../maker/src/ directory that you added to the PATH. Thanks, Carson On 1/14/14, 7:22 AM, "Mark Yandell" wrote: > > >Mark Yandell >Professor of Human Genetics >H.A. & Edna Benning Presidential Endowed Chair >Eccles Institute of Human Genetics >University of Utah >15 North 2030 East, Room 2100 >Salt Lake City, UT 84112-5330 >ph:801-587-7707 > >________________________________________ >From: Nandita Pasari [nandita at icgeb.res.in] >Sent: Tuesday, January 14, 2014 5:09 AM >To: Mark Yandell >Subject: Issues regarding maker > >Respected Sir, > >I have been trying to install maker and the configuration it is showing >on installation is ok. >when I type maker -h it shows > > >"No command 'maker' found, did you mean: > Command 'wmaker' from package 'wmaker-common' (universe) > Command 'makeg' from package 'xutils-dev' (main) > Command 'make' from package 'make' (main) > maker: command not found" > >Also I have set the path in nano ./bashrc profile still it is not running. >Can you please help me out. > > >Nandita Pasari >Pre Doctoral Fellow >Synthetic Biology and Biofuels Group >ICGEB >New Delhi From amelia.ireland at gmod.org Tue Jan 14 13:55:20 2014 From: amelia.ireland at gmod.org (Amelia Ireland) Date: Tue, 14 Jan 2014 12:55:20 -0800 Subject: [maker-devel] GMOD Malaysia 2014 Message-ID: GMOD is pleased to announce GMOD Malaysia, a three-day training course to be held in Kuala Lumpur, Malaysia, on February 26-28, 2014. http://gmod.org/wiki/GMOD_Malaysia_2014 GMOD Malaysia offers an introduction to, and training in, the bioinformatics software offered by the Generic Model Organism Database project. Over three days, participants will learn about GMOD's free, open-source tools for visualising, storing, and disseminating genetic and genomic data. These include: - Galaxy analysis pipeline - GBrowse and JBrowse genome browsers - InterMine data warehouse - MAKER and MAKER-P genome annotation pipelines - Tripal website generator and database interface - Chado database schema Instruction is by experienced instructors and developers with deep knowledge of the tools and their applications. By the end of the course, participants will have hands-on experience of setting up and using core components needed for a modern genomics project. Application deadline: 12 February 2014. For more information, and to apply, please visit the website: http://gmod.org/wiki/GMOD_Malaysia_2014 Please spread the word to anyone who may be interested! GMOD Malaysia 2014 is made possible by the extremely generous support of National Evolutionary Synthesis Center (NESCent, http://nescent.org) and the NESCent Ambassador program. NESCent promotes the synthesis of information, concepts and knowledge to address significant, emerging, or novel questions in evolutionary science and its applications; it supports research and education across disciplinary, institutional, geographic, and demographic boundaries. The NESCent Ambassador Program is NESCent?s primary international outreach program, and is supported by a three-year grant from the NSF. GMOD is very grateful to be a beneficiary of this generous program. Thanks! -- Amelia Ireland GMOD Community Support Generic Model Organism Database project http://gmod.org || @gmodproject -------------- next part -------------- An HTML attachment was scrubbed... URL: From prakhar_aaidu16 at hotmail.com Wed Jan 15 23:12:24 2014 From: prakhar_aaidu16 at hotmail.com (PRAKHAR gaur) Date: Thu, 16 Jan 2014 11:42:24 +0530 Subject: [maker-devel] Maker Virtual Machine Image Message-ID: Hello, I am having multiple dependency related and library version issues installing Maker 2.28 on Debian 7 So would like to ask if there is a easy way out?Is there a vm image with Maker available for download from somewhere? I know about the AWS ami used for 2103 GMOD Maker Tutorial, ami-ea661f83. But wanted to use the vm locally, which is not possible with AWS ami's. Any help / pointer in right direction is appreciated. Regards,--Prakhar GaurSenior Research FellowMicrobiology @ Indian Agriculture Research InstituteNew Delhi, IN. -------------- next part -------------- An HTML attachment was scrubbed... URL: From prakhar_aaidu16 at hotmail.com Wed Jan 15 23:43:23 2014 From: prakhar_aaidu16 at hotmail.com (PRAKHAR gaur) Date: Thu, 16 Jan 2014 12:13:23 +0530 Subject: [maker-devel] Maker Virtual Machine Image In-Reply-To: References: , Message-ID: Hello Dan, The sample is a Prokaryotic genome, assembly size is greater than 6Mbp (rules out Web-Maker) Maker 2.30 is beta release hence did not try it out, will do that now. I have installed Maker before and its not a trivial task, hence the question about Virtual Machine. Since I am already struggling with installing Prokka and DIYA. If a virtual machine is available it would save ~ 3 days time, otherwise I will install from bottom up! Regards,--Prakhar GaurSenior Research FellowMicrobiology @ Indian Agriculture Research InstituteNew Delhi, IN. From: ddvanderpool at gmail.com Subject: Re: [maker-devel] Maker Virtual Machine Image Date: Wed, 15 Jan 2014 23:17:30 -0700 To: prakhar_aaidu16 at hotmail.com Hello Prakhar, Is there a reason you have not tried installing 2.30? I have it running on Debian 7 and it was fairly straight forward. Additionally, the multithreading speeds everything up so that I can annotate several smaller eukaryote genomes in one day. which dependencies and libraries are the problem? Dan VanderpoolUniversity of MontanaMcCutcheon LabHealth Sciences 304Missoula, MT 59812Office: 406-243-6106ddvanderpool at gmail.com On Jan 15, 2014, at 11:12 PM, PRAKHAR gaur wrote:Hello, I am having multiple dependency related and library version issues installing Maker 2.28 on Debian 7 So would like to ask if there is a easy way out?Is there a vm image with Maker available for download from somewhere? I know about the AWS ami used for 2103 GMOD Maker Tutorial, ami-ea661f83. But wanted to use the vm locally, which is not possible with AWS ami's. Any help / pointer in right direction is appreciated. Regards,--Prakhar GaurSenior Research FellowMicrobiology @ Indian Agriculture Research InstituteNew Delhi, IN._______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org -------------- next part -------------- An HTML attachment was scrubbed... URL: From barry.utah at gmail.com Thu Jan 16 07:16:18 2014 From: barry.utah at gmail.com (Barry Moore) Date: Thu, 16 Jan 2014 07:16:18 -0700 Subject: [maker-devel] Maker Virtual Machine Image In-Reply-To: References: Message-ID: Hi Prakar, We don't regularly create VMs of MAKER, but if you can give us some details on the install issues and well help you sort through them and fix any problems that you may have uncovered. Barry On Jan 15, 2014, at 11:12 PM, PRAKHAR gaur wrote: > Hello, > > I am having multiple dependency related and library version issues installing Maker 2.28 on Debian 7 > > So would like to ask if there is a easy way out? > Is there a vm image with Maker available for download from somewhere? > > I know about the AWS ami used for 2103 GMOD Maker Tutorial, ami-ea661f83. > > But wanted to use the vm locally, which is not possible with AWS ami's. > > Any help / pointer in right direction is appreciated. > > Regards, > -- > Prakhar Gaur > Senior Research Fellow > Microbiology @ Indian Agriculture Research Institute > New Delhi, IN. > _______________________________________________ > maker-devel mailing list > maker-devel at box290.bluehost.com > http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org Barry Moore Research Scientist Dept. of Human Genetics University of Utah Salt Lake City, UT 84112 -------------------------------------------- (801) 585-3543 -------------- next part -------------- An HTML attachment was scrubbed... URL: From saneasheikh at gmail.com Thu Jan 16 03:52:29 2014 From: saneasheikh at gmail.com (Sanea Sheikh) Date: Thu, 16 Jan 2014 11:52:29 +0100 Subject: [maker-devel] Fwd: Problem with re-annotation In-Reply-To: References: Message-ID: Hello Carson Here it is. Sanea On Tue, Jan 14, 2014 at 1:39 AM, Carson Holt wrote: > Hi Sanea, > > There are no snap calls in your results. It?s as if SNAP never even ran. > Did you capture STDERR from your second run? If so can you send it to me. > I just want to see if it even shows SNAP as having run in the progress > reports. > > Thanks, > Carson > > From: Sanea Sheikh > Date: Monday, January 13, 2014 at 2:17 AM > To: > Subject: [maker-devel] Problem with re-annotation > > Hello > > I am using Maker to annotate a genome for which I only have EST data and > some protein data. I ran Maker once using this EST and protein data > (est2genome=1, protein2genome=1). I had the Maker output. I combined all > the GFF files for all the contigs. I used the combined GFF file to train > SNAP which gave me a .hmm file. Now I modified the Maker opts control file. > I provided the hmm file in snap_hmm. I set est2genome=0 and > protein2genome=0. I ran Maker again assuming that now I have trained the > gene predictor and I would have better annotations. But now the output file > that I get does not have Maker annotation. I have attached the control > files and the output file for the re-run so you can have a look and let me > know what I am doing wrong in order to re-annotate the genome using the > output from the previous run. > > Sanea > _______________________________________________ maker-devel mailing list > maker-devel at box290.bluehost.com > http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org > -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- [saneash at milou2 re-run0]$ module load bioinfo-tools [saneash at milou2 re-run0]$ module load maker/2.28 [saneash at milou2 re-run0]$ maker STATUS: Parsing control files... STATUS: Processing and indexing input FASTA files... STATUS: Setting up database for any GFF3 input... A data structure will be created for you at: /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore To access files for individual sequences use the datastore index: /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_master_datastore_index.log STATUS: Now running MAKER... examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C1 Length: 58489 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0 -pa 1 #-------------------------------# doing blastx repeats formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:4 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:4 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:4 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:4 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:4 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:1 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:5 current j:0 j_size:5 current j:1 j_size:5 current j:2 j_size:5 current j:3 j_size:5 current j:4 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C1.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C1.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11053%7Crhogap.for.4526-6082.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.4526-6082.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.4526-6082.Ar_EST_120301b_c11053%7Crhogap.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c268%7Crhogap.for.5511-6995.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.5511-6995.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.5511-6995.Ar_EST_120301b_c268%7Crhogap.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2803%7Cprotein.for.6572-8321.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.6572-8321.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.6572-8321.Ar_EST_120301b_c2803%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18685%7C5.for.10389-12250.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.10389-12250.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.10389-12250.Ar_EST_120301b_c18685%7C5.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20527%7C5.for.11857-13265.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.11857-13265.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.11857-13265.Ar_EST_120301b_c20527%7C5.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c607%7C---NA---.for.12934-14282.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.12934-14282.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.12934-14282.Ar_EST_120301b_c607%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10671%7Cn-acylethanolamine-hydrolyzing.for.13964-15360.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.13964-15360.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.13964-15360.Ar_EST_120301b_c10671%7Cn-acylethanolamine-hydrolyzing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17817%7C26s.for.14494-15869.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.14494-15869.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.14494-15869.Ar_EST_120301b_c17817%7C26s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2291%7Cautophagy.for.15736-17754.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.15736-17754.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.15736-17754.Ar_EST_120301b_c2291%7Cautophagy.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17723%7Ccci.for.17326-18646.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.17326-18646.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.17326-18646.Ar_EST_120301b_c17723%7Ccci.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13159%7Cair9.for.19436-20822.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.19436-20822.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.19436-20822.Ar_EST_120301b_c13159%7Cair9.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11534%7Cair9.for.20126-21431.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.20126-21431.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.20126-21431.Ar_EST_120301b_c11534%7Cair9.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15074%7Cair9.for.20452-21494.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.20452-21494.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.20452-21494.Ar_EST_120301b_c15074%7Cair9.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1253%7Cf-box.for.22970-24212.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.22970-24212.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.22970-24212.Ar_EST_120301b_c1253%7Cf-box.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17132%7Calkylated.for.24491-25995.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.24491-25995.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.24491-25995.Ar_EST_120301b_c17132%7Calkylated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9069%7Cam193219.for.31057-32071.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.31057-32071.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.31057-32071.Ar_EST_120301b_c9069%7Cam193219.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10823%7Ccr05-c1-100-012-f08-.for.33886-35415.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.33886-35415.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.33886-35415.Ar_EST_120301b_c10823%7Ccr05-c1-100-012-f08-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c930%7Cprotein.for.38557-40055.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.38557-40055.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.38557-40055.Ar_EST_120301b_c930%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18260%7Cunq127-.for.40476-41781.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.40476-41781.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.40476-41781.Ar_EST_120301b_c18260%7Cunq127-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2552%7Cprotein.for.48234-49551.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.48234-49551.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.48234-49551.Ar_EST_120301b_c2552%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2497%7Cprotein.for.48058-49397.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.48058-49397.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.48058-49397.Ar_EST_120301b_c2497%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1789%7Cprotein.for.48205-49551.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.48205-49551.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.48205-49551.Ar_EST_120301b_c1789%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18050%7Ccto.for.49972-51260.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.49972-51260.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.49972-51260.Ar_EST_120301b_c18050%7Ccto.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9640%7Cmethyltransferase.for.51502-53111.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.51502-53111.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.51502-53111.Ar_EST_120301b_c9640%7Cmethyltransferase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17917%7Ccht.for.52335-53662.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.52335-53662.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.52335-53662.Ar_EST_120301b_c17917%7Ccht.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16986%7Cvcdc13845.for.55765-57091.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.55765-57091.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.55765-57091.Ar_EST_120301b_c16986%7Cvcdc13845.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 flattening EST clusters doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:36 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:40 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:35 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:65 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:45 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:50 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:34 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:50 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:39 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:30 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088766%7Cgb%7CEFC42427%2E1%7C.for.4953-6967.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.4953-6967.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.4953-6967.gi%7C284088766%7Cgb%7CEFC42427%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083894%7Cgb%7CEFC37592%2E1%7C.for.6309-7884.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.6309-7884.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.6309-7884.gi%7C284083894%7Cgb%7CEFC37592%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089795%7Cgb%7CEFC43450%2E1%7C.for.6219-8277.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.6219-8277.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.6219-8277.gi%7C284089795%7Cgb%7CEFC43450%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097098%7Cgb%7CEFC50725%2E1%7C.for.15836-17505.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.15836-17505.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.15836-17505.gi%7C284097098%7Cgb%7CEFC50725%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095290%7Cgb%7CEFC48921%2E1%7C.for.24561-26053.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.24561-26053.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.24561-26053.gi%7C284095290%7Cgb%7CEFC48921%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085158%7Cgb%7CEFC38844%2E1%7C.for.25336-26753.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.25336-26753.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.25336-26753.gi%7C284085158%7Cgb%7CEFC38844%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096842%7Cgb%7CEFC50469%2E1%7C.for.26367-28540.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.26367-28540.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.26367-28540.gi%7C284096842%7Cgb%7CEFC50469%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081501%7Cgb%7CEFC35480%2E1%7C.for.38104-39098.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.38104-39098.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.38104-39098.gi%7C284081501%7Cgb%7CEFC35480%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085657%7Cgb%7CEFC39339%2E1%7C.for.38104-39098.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.38104-39098.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.38104-39098.gi%7C284085657%7Cgb%7CEFC39339%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.for.41924-44025.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41924-44025.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41924-44025.gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090673%7Cgb%7CEFC44323%2E1%7C.for.41960-43878.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41960-43878.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41960-43878.gi%7C284090673%7Cgb%7CEFC44323%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.for.41960-43902.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41960-43902.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41960-43902.gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094023%7Cgb%7CEFC47658%2E1%7C.for.41957-44109.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41957-44109.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41957-44109.gi%7C284094023%7Cgb%7CEFC47658%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.for.41954-43965.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41954-43965.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41954-43965.gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C464854%7Csp%7CP34108%2E1%7CTBB_NAEGR.for.45443-47597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.gi%7C464854%7Csp%7CP34108%2E1%7CTBB_NAEGR.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086940%7Cgb%7CEFC40613%2E1%7C.for.45578-47603.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45578-47603.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45578-47603.gi%7C284086940%7Cgb%7CEFC40613%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C9737%7Cemb%7CCAA78362%2E1%7C.for.45443-47597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.gi%7C9737%7Cemb%7CCAA78362%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082800%7Cgb%7CEFC36511%2E1%7C.for.45443-47597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.gi%7C284082800%7Cgb%7CEFC36511%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086082%7Cgb%7CEFC39761%2E1%7C.for.45443-47597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.gi%7C284086082%7Cgb%7CEFC39761%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091464%7Cgb%7CEFC45110%2E1%7C.for.45440-47621.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45440-47621.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45440-47621.gi%7C284091464%7Cgb%7CEFC45110%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C15082214%7Cgb%7CAAK84066%2E1%7CAF401641_1.for.45443-46787.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-46787.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-46787.gi%7C15082214%7Cgb%7CAAK84066%2E1%7CAF401641_1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093591%7Cgb%7CEFC47228%2E1%7C.for.45440-47594.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45440-47594.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45440-47594.gi%7C284093591%7Cgb%7CEFC47228%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091812%7Cgb%7CEFC45457%2E1%7C.for.45443-47639.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47639.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47639.gi%7C284091812%7Cgb%7CEFC45457%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C829213%7Cemb%7CCAA56940%2E1%7C.for.45443-47597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.gi%7C829213%7Cemb%7CCAA56940%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083707%7Cgb%7CEFC37407%2E1%7C.for.45449-47648.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45449-47648.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45449-47648.gi%7C284083707%7Cgb%7CEFC37407%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084695%7Cgb%7CEFC38385%2E1%7C.for.45443-47597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.gi%7C284084695%7Cgb%7CEFC38385%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083068%7Cgb%7CEFC36775%2E1%7C.for.45443-47597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.gi%7C284083068%7Cgb%7CEFC36775%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096574%7Cgb%7CEFC50202%2E1%7C.for.48315-49510.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.48315-49510.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.48315-49510.gi%7C284096574%7Cgb%7CEFC50202%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:8 now processing 0 total clusters:8 now processing 0 total clusters:8 now processing 0 total clusters:8 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:8 now processing 0 ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:8 now processing 0 total clusters:8 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:8 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:7 now processing 0 ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:14 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:14 now processing 0 total clusters:14 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.4725-6795.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.4725-6795.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.4725-6795.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.10588-12055.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.10588-12055.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.10588-12055.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.12056-13157.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.12056-13157.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.12056-13157.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.15926-18446.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.15926-18446.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.15926-18446.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.23065-23889.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.23065-23889.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.23065-23889.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.24690-25853.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.24690-25853.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.24690-25853.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.26566-28340.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.26566-28340.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.26566-28340.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.38273-38898.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.38273-38898.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.38273-38898.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.40672-41581.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.40672-41581.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.40672-41581.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.45639-47448.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.45639-47448.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.45639-47448.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.48257-49356.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.48257-49356.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.48257-49356.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.50171-51071.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.50171-51071.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.50171-51071.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.55964-56891.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.55964-56891.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.55964-56891.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.6418-8217.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.6418-8217.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.6418-8217.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.13131-14082.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.13131-14082.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.13131-14082.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.14163-15160.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.14163-15160.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.14163-15160.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.19635-21294.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.19635-21294.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.19635-21294.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.23268-24019.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.23268-24019.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.23268-24019.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.25535-26553.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.25535-26553.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.25535-26553.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.31256-31871.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.31256-31871.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.31256-31871.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.34085-35224.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.34085-35224.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.34085-35224.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.51701-53462.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.51701-53462.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.51701-53462.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C2 Length: 117277 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:103 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:75 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:71 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:65 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:81 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:94 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:87 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:81 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:73 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:80 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C2.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C2.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c507%7Chypothetical.for.1-1394.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.1-1394.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.1-1394.Ar_EST_120301b_c507%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14990%7C---NA---.for.640-1498.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.640-1498.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.640-1498.Ar_EST_120301b_c14990%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5131%7CsT7aVVM011J17071.for.761-2391.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.761-2391.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.761-2391.Ar_EST_120301b_rep_c5131%7CsT7aVVM011J17071.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig47%7Ctransmembrane.for.6436-8329.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.6436-8329.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.6436-8329.120301b_Contig47%7Ctransmembrane.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14084%7Cunnamed.for.7758-9064.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.7758-9064.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.7758-9064.Ar_EST_120301b_c14084%7Cunnamed.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9225%7Ctransmembrane.for.8330-9700.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.8330-9700.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.8330-9700.Ar_EST_120301b_c9225%7Ctransmembrane.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14631%7Chydra.for.8696-9907.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.8696-9907.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.8696-9907.Ar_EST_120301b_c14631%7Chydra.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3024%7Cudp-glucose.for.9676-11591.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.9676-11591.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.9676-11591.Ar_EST_120301b_c3024%7Cudp-glucose.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig990%7Cmitochondrial.for.10856-12335.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.10856-12335.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.10856-12335.120301b_Contig990%7Cmitochondrial.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1211%7Cgcn5-related.for.11805-13456.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.11805-13456.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.11805-13456.Ar_EST_120301b_c1211%7Cgcn5-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16722%7Cct752454.for.13015-14306.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.13015-14306.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.13015-14306.Ar_EST_120301b_c16722%7Cct752454.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig224%7Cprotein.for.15919-17709.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.15919-17709.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.15919-17709.120301b_Contig224%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3881%7Cprotein.for.16047-17501.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.16047-17501.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.16047-17501.Ar_EST_120301b_c3881%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2433%7Cgpgc_est03437.for.17128-18491.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.17128-18491.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.17128-18491.Ar_EST_120301b_c2433%7Cgpgc_est03437.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13343%7Cdioscorea.for.17305-18618.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.17305-18618.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.17305-18618.Ar_EST_120301b_c13343%7Cdioscorea.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11728%7Cpiggybac-derived.for.18145-19476.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.18145-19476.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.18145-19476.Ar_EST_120301b_c11728%7Cpiggybac-derived.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8045%7Chypothetical.for.22621-24232.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.22621-24232.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.22621-24232.Ar_EST_120301b_c8045%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12485%7Ch019c03.for.22501-23565.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.22501-23565.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.22501-23565.Ar_EST_120301b_c12485%7Ch019c03.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16884%7Cheat-shocked.for.24359-25393.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.24359-25393.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.24359-25393.Ar_EST_120301b_c16884%7Cheat-shocked.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5131%7CsT7aVVM011J17071.for.25415-26610.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.25415-26610.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.25415-26610.Ar_EST_120301b_rep_c5131%7CsT7aVVM011J17071.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19746%7Cglycoside.for.26440-27757.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.26440-27757.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.26440-27757.Ar_EST_120301b_c19746%7Cglycoside.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig676%7Cglycoside.for.26298-28164.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.26298-28164.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.26298-28164.120301b_Contig676%7Cglycoside.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13860%7Cprotein.for.32010-33342.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.32010-33342.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.32010-33342.Ar_EST_120301b_c13860%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c199%7Cinterferon-related.for.33113-34832.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.33113-34832.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.33113-34832.Ar_EST_120301b_c199%7Cinterferon-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig826%7Cintegral.for.34950-37418.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.34950-37418.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.34950-37418.120301b_Contig826%7Cintegral.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3644%7Crasgef.for.40362-42405.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.40362-42405.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.40362-42405.Ar_EST_120301b_c3644%7Crasgef.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2583%7Crasgef.for.39147-41164.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.39147-41164.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.39147-41164.Ar_EST_120301b_c2583%7Crasgef.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12768%7Crasgef.for.41845-43175.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.41845-43175.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.41845-43175.Ar_EST_120301b_c12768%7Crasgef.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16000%7Cprotein.for.42497-43802.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.42497-43802.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.42497-43802.Ar_EST_120301b_c16000%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12166%7Cdedicator.for.43827-45754.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.43827-45754.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.43827-45754.Ar_EST_120301b_c12166%7Cdedicator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12629%7Cpeptidyl-prolyl.for.46674-48006.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46674-48006.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46674-48006.Ar_EST_120301b_c12629%7Cpeptidyl-prolyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4714%7Crac.for.50959-53161.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.50959-53161.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.50959-53161.Ar_EST_120301b_rep_c4714%7Crac.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11446%7C40s.for.51193-52314.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51193-52314.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51193-52314.Ar_EST_120301b_rep_c11446%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7175%7Crac-beta.for.51491-53136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51491-53136.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51491-53136.Ar_EST_120301b_rep_c7175%7Crac-beta.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17186%7Cprotein.for.52528-54217.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52528-54217.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52528-54217.Ar_EST_120301b_c17186%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17524%7Ccto.for.59145-60473.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.59145-60473.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.59145-60473.Ar_EST_120301b_c17524%7Ccto.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c989%7Cprotease.for.60132-61476.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.60132-61476.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.60132-61476.Ar_EST_120301b_c989%7Cprotease.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7983%7Cendonuclease.for.60911-62507.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.60911-62507.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.60911-62507.Ar_EST_120301b_c7983%7Cendonuclease.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20027%7Cgtp-binding.for.62798-64102.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.62798-64102.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.62798-64102.Ar_EST_120301b_c20027%7Cgtp-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18683%7Cg-protein.for.62454-63870.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.62454-63870.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.62454-63870.Ar_EST_120301b_c18683%7Cg-protein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16992%7Cnovel.for.63760-65049.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.63760-65049.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.63760-65049.Ar_EST_120301b_c16992%7Cnovel.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10583%7Clipase.for.68765-70207.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.68765-70207.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.68765-70207.Ar_EST_120301b_c10583%7Clipase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11588%7C---NA---.for.69933-71292.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.69933-71292.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.69933-71292.Ar_EST_120301b_c11588%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1963%7Cprotein.for.70510-71966.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.70510-71966.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.70510-71966.Ar_EST_120301b_c1963%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20347%7Cpeptidase.for.74316-75861.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.74316-75861.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.74316-75861.Ar_EST_120301b_c20347%7Cpeptidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20105%7Cserine.for.73290-75800.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.73290-75800.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.73290-75800.Ar_EST_120301b_c20105%7Cserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13314%7Ckaan-.for.76588-77926.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.76588-77926.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.76588-77926.Ar_EST_120301b_c13314%7Ckaan-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17187%7Cljna722tf.for.78662-79915.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.78662-79915.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.78662-79915.Ar_EST_120301b_c17187%7Cljna722tf.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14075%7Cipt.for.80654-82283.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.80654-82283.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.80654-82283.Ar_EST_120301b_c14075%7Cipt.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2151%7Cegf-like.for.80564-82712.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.80564-82712.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.80564-82712.Ar_EST_120301b_c2151%7Cegf-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15871%7Cgm-r1089.for.81864-83119.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.81864-83119.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.81864-83119.Ar_EST_120301b_c15871%7Cgm-r1089.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3019%7Crcc1.for.82360-83500.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.82360-83500.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.82360-83500.Ar_EST_120301b_c3019%7Crcc1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18457%7Cregulator.for.82761-84301.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.82761-84301.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.82761-84301.Ar_EST_120301b_c18457%7Cregulator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2002%7Cmitochondrial.for.84168-85833.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.84168-85833.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.84168-85833.Ar_EST_120301b_c2002%7Cmitochondrial.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16158%7Cthioredoxin.for.86999-88287.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.86999-88287.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.86999-88287.Ar_EST_120301b_c16158%7Cthioredoxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10238%7Ccto.for.88444-90125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.88444-90125.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.88444-90125.Ar_EST_120301b_c10238%7Ccto.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c525%7Ctranscription.for.89357-91075.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.89357-91075.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.89357-91075.Ar_EST_120301b_c525%7Ctranscription.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10630%7Cpredicted.for.90701-91993.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.90701-91993.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.90701-91993.Ar_EST_120301b_c10630%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3446%7Cwd.for.94044-95698.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.94044-95698.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.94044-95698.Ar_EST_120301b_c3446%7Cwd.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2740%7Cbromodomain.for.95217-96781.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.95217-96781.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.95217-96781.Ar_EST_120301b_c2740%7Cbromodomain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14182%7Cwd40.for.95143-96256.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.95143-96256.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.95143-96256.Ar_EST_120301b_c14182%7Cwd40.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2955%7Cwd.for.96139-98603.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.96139-98603.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.96139-98603.Ar_EST_120301b_c2955%7Cwd.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15897%7Cwd.for.96376-97474.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.96376-97474.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.96376-97474.Ar_EST_120301b_c15897%7Cwd.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1239%7C---NA---.for.98316-99620.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.98316-99620.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.98316-99620.Ar_EST_120301b_c1239%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1149%7Cbeta-galactosidase.for.101237-104546.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.101237-104546.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.101237-104546.Ar_EST_120301b_c1149%7Cbeta-galactosidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18482%7C---NA---.for.103754-105055.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.103754-105055.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.103754-105055.Ar_EST_120301b_c18482%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17585%7Csuppressor.for.104275-105642.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.104275-105642.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.104275-105642.Ar_EST_120301b_c17585%7Csuppressor.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9748%7Cphytanoyl-.for.105274-106624.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.105274-106624.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.105274-106624.Ar_EST_120301b_c9748%7Cphytanoyl-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16625%7Cixodes.for.108291-109796.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.108291-109796.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.108291-109796.Ar_EST_120301b_c16625%7Cixodes.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig957%7Cprolyl.for.111713-113469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.111713-113469.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.111713-113469.120301b_Contig957%7Cprolyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c341%7Cprolyl.for.112916-114615.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.112916-114615.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.112916-114615.Ar_EST_120301b_c341%7Cprolyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19609%7C60s.for.114043-115231.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.114043-115231.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.114043-115231.Ar_EST_120301b_rep_c19609%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c363%7Cprotein.for.115090-116629.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.115090-116629.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.115090-116629.Ar_EST_120301b_c363%7Cprotein.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:52 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:52 now processing 0 total clusters:52 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:52 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:52 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 total clusters:52 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:72 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:65 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:74 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:81 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:70 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:73 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:60 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:72 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:77 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:58 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094603%7Cgb%7CEFC48237%2E1%7C.for.9805-11564.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.9805-11564.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.9805-11564.gi%7C284094603%7Cgb%7CEFC48237%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083050%7Cgb%7CEFC36758%2E1%7C.for.16040-17692.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.16040-17692.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.16040-17692.gi%7C284083050%7Cgb%7CEFC36758%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096069%7Cgb%7CEFC49698%2E1%7C.for.16040-17659.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.16040-17659.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.16040-17659.gi%7C284096069%7Cgb%7CEFC49698%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091333%7Cgb%7CEFC44980%2E1%7C.for.27718-29412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.27718-29412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.27718-29412.gi%7C284091333%7Cgb%7CEFC44980%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089590%7Cgb%7CEFC43247%2E1%7C.for.39144-41128.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.39144-41128.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.39144-41128.gi%7C284089590%7Cgb%7CEFC43247%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089589%7Cgb%7CEFC43246%2E1%7C.for.39144-41128.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.39144-41128.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.39144-41128.gi%7C284089589%7Cgb%7CEFC43246%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081155%7Cgb%7CEFC35313%2E1%7C.for.46491-47770.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47770.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47770.gi%7C284081155%7Cgb%7CEFC35313%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092983%7Cgb%7CEFC46623%2E1%7C.for.46491-47770.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47770.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47770.gi%7C284092983%7Cgb%7CEFC46623%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093592%7Cgb%7CEFC47229%2E1%7C.for.46503-47767.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46503-47767.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46503-47767.gi%7C284093592%7Cgb%7CEFC47229%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089692%7Cgb%7CEFC43348%2E1%7C.for.46503-47779.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46503-47779.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46503-47779.gi%7C284089692%7Cgb%7CEFC43348%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088464%7Cgb%7CEFC42127%2E1%7C.for.46491-47770.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47770.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47770.gi%7C284088464%7Cgb%7CEFC42127%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094883%7Cgb%7CEFC48516%2E1%7C.for.46497-47776.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46497-47776.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46497-47776.gi%7C284094883%7Cgb%7CEFC48516%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095464%7Cgb%7CEFC49095%2E1%7C.for.46491-47767.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47767.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47767.gi%7C284095464%7Cgb%7CEFC49095%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090503%7Cgb%7CEFC44154%2E1%7C.for.46491-47770.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47770.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47770.gi%7C284090503%7Cgb%7CEFC44154%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086458%7Cgb%7CEFC40134%2E1%7C.for.46491-47773.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47773.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47773.gi%7C284086458%7Cgb%7CEFC40134%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094068%7Cgb%7CEFC47703%2E1%7C.for.51383-53046.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51383-53046.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51383-53046.gi%7C284094068%7Cgb%7CEFC47703%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094875%7Cgb%7CEFC48508%2E1%7C.for.50957-53136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.50957-53136.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.50957-53136.gi%7C284094875%7Cgb%7CEFC48508%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094832%7Cgb%7CEFC48465%2E1%7C.for.50972-53136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.50972-53136.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.50972-53136.gi%7C284094832%7Cgb%7CEFC48465%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088361%7Cgb%7CEFC42025%2E1%7C.for.51365-53046.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51365-53046.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51365-53046.gi%7C284088361%7Cgb%7CEFC42025%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090070%7Cgb%7CEFC43724%2E1%7C.for.51362-53094.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51362-53094.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51362-53094.gi%7C284090070%7Cgb%7CEFC43724%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085317%7Cgb%7CEFC39002%2E1%7C.for.52410-54205.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52410-54205.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52410-54205.gi%7C284085317%7Cgb%7CEFC39002%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081068%7Cgb%7CEFC35282%2E1%7C.for.52797-54004.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52797-54004.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52797-54004.gi%7C284081068%7Cgb%7CEFC35282%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.for.52776-53791.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52776-53791.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52776-53791.gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091625%7Cgb%7CEFC45271%2E1%7C.for.52410-54199.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52410-54199.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52410-54199.gi%7C284091625%7Cgb%7CEFC45271%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096422%7Cgb%7CEFC50050%2E1%7C.for.52410-54208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52410-54208.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52410-54208.gi%7C284096422%7Cgb%7CEFC50050%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097050%7Cgb%7CEFC50677%2E1%7C.for.52416-54202.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52416-54202.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52416-54202.gi%7C284097050%7Cgb%7CEFC50677%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090562%7Cgb%7CEFC44213%2E1%7C.for.66633-67624.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66633-67624.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66633-67624.gi%7C284090562%7Cgb%7CEFC44213%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092309%7Cgb%7CEFC45952%2E1%7C.for.66693-67995.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66693-67995.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66693-67995.gi%7C284092309%7Cgb%7CEFC45952%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090708%7Cgb%7CEFC44358%2E1%7C.for.66516-67624.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66516-67624.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66516-67624.gi%7C284090708%7Cgb%7CEFC44358%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093840%7Cgb%7CEFC47476%2E1%7C.for.66690-67615.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66690-67615.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66690-67615.gi%7C284093840%7Cgb%7CEFC47476%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081311%7Cgb%7CEFC35385%2E1%7C.for.66618-67624.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66618-67624.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66618-67624.gi%7C284081311%7Cgb%7CEFC35385%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082866%7Cgb%7CEFC36576%2E1%7C.for.70396-71585.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.70396-71585.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.70396-71585.gi%7C284082866%7Cgb%7CEFC36576%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082849%7Cgb%7CEFC36560%2E1%7C.for.73129-75157.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.73129-75157.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.73129-75157.gi%7C284082849%7Cgb%7CEFC36560%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.for.80650-81731.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.80650-81731.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.80650-81731.gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089151%7Cgb%7CEFC42810%2E1%7C.for.87117-88275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.87117-88275.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.87117-88275.gi%7C284089151%7Cgb%7CEFC42810%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095219%7Cgb%7CEFC48850%2E1%7C.for.111697-114629.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.111697-114629.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.111697-114629.gi%7C284095219%7Cgb%7CEFC48850%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086650%7Cgb%7CEFC40325%2E1%7C.for.115979-117015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.115979-117015.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.115979-117015.gi%7C284086650%7Cgb%7CEFC40325%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:9 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:9 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:7 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:7 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:26 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.954-2217.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.954-2217.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.954-2217.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.9875-14112.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.9875-14112.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.9875-14112.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.16118-18418.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.16118-18418.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.16118-18418.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.22820-24032.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.22820-24032.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.22820-24032.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.51156-52963.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.51156-52963.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.51156-52963.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.59344-62307.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.59344-62307.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.59344-62307.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.68964-70007.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.68964-70007.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.68964-70007.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.70132-71766.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.70132-71766.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.70132-71766.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.76787-77726.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.76787-77726.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.76787-77726.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.78861-79715.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.78861-79715.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.78861-79715.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.84367-85636.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.84367-85636.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.84367-85636.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.94243-98403.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.94243-98403.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.94243-98403.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.98513-99420.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.98513-99420.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.98513-99420.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.101436-105465.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.101436-105465.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.101436-105465.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.105473-106424.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.105473-106424.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.105473-106424.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.115289-116429.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.115289-116429.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.115289-116429.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.6631-9707.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.6631-9707.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.6631-9707.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.26497-27964.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.26497-27964.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.26497-27964.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.32196-33142.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.32196-33142.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.32196-33142.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.35149-37218.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.35149-37218.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.35149-37218.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.39346-43602.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.39346-43602.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.39346-43602.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.44026-45564.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.44026-45564.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.44026-45564.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.46690-47806.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.46690-47806.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.46690-47806.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.52615-54017.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.52615-54017.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.52615-54017.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.62650-64855.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.62650-64855.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.62650-64855.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.66715-67795.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.66715-67795.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.66715-67795.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.73328-75726.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.73328-75726.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.73328-75726.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.80763-84101.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.80763-84101.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.80763-84101.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.87198-88087.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.87198-88087.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.87198-88087.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.88643-90875.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.88643-90875.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.88643-90875.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.90900-91793.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.90900-91793.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.90900-91793.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.108490-109596.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.108490-109596.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.108490-109596.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.111879-114429.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.111879-114429.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.111879-114429.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.116098-116885.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.116098-116885.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.116098-116885.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C4 Length: 65381 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C4.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C4.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10892%7C0082817.for.1-1025.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.1-1025.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.1-1025.Ar_EST_120301b_c10892%7C0082817.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12497%7Cpl08003b1g07.for.464-1964.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.464-1964.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.464-1964.Ar_EST_120301b_c12497%7Cpl08003b1g07.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9064%7Chypothetical.for.1180-2583.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.1180-2583.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.1180-2583.Ar_EST_120301b_c9064%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14018%7Cui-s-gu1-aee-p-13-0-.for.2150-3327.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.2150-3327.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.2150-3327.Ar_EST_120301b_c14018%7Cui-s-gu1-aee-p-13-0-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16392%7Ctm2.for.3881-5011.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3881-5011.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3881-5011.Ar_EST_120301b_rep_c16392%7Ctm2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18540%7Cpredicted.for.4013-5052.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.4013-5052.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.4013-5052.Ar_EST_120301b_rep_c18540%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19988%7Ctm2.for.4002-4998.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.4002-4998.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.4002-4998.Ar_EST_120301b_rep_c19988%7Ctm2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17214%7Ctm2.for.3986-5028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3986-5028.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3986-5028.Ar_EST_120301b_rep_c17214%7Ctm2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15650%7Cpredicted.for.3969-4990.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3969-4990.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3969-4990.Ar_EST_120301b_rep_c15650%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7924%7Cpredicted.for.3983-5062.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3983-5062.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3983-5062.Ar_EST_120301b_rep_c7924%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6312%7Cribosomal.for.3930-4999.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3930-4999.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3930-4999.Ar_EST_120301b_rep_c6312%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4538%7Ctm2.for.3881-5023.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3881-5023.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3881-5023.Ar_EST_120301b_rep_c4538%7Ctm2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13709%7Cintegrator.for.6912-8195.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.6912-8195.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.6912-8195.Ar_EST_120301b_c13709%7Cintegrator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9675%7Cculex.for.9178-10584.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.9178-10584.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.9178-10584.Ar_EST_120301b_c9675%7Cculex.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c257%7Cqg_abcdi.for.9988-11249.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.9988-11249.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.9988-11249.Ar_EST_120301b_c257%7Cqg_abcdi.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8616%7Cclp.for.16774-18142.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.16774-18142.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.16774-18142.Ar_EST_120301b_rep_c8616%7Cclp.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c673%7Ccathepsin.for.22385-24283.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.22385-24283.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.22385-24283.Ar_EST_120301b_c673%7Ccathepsin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16839%7Cn-acetylglucosaminyl-phosphatidylinositol.for.24238-25543.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.24238-25543.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.24238-25543.Ar_EST_120301b_c16839%7Cn-acetylglucosaminyl-phosphatidylinositol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13622%7Cpredicted.for.27404-28719.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.27404-28719.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.27404-28719.Ar_EST_120301b_c13622%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3407%7Cabc.for.28182-30134.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.28182-30134.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.28182-30134.Ar_EST_120301b_c3407%7Cabc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13324%7Cpeptidase.for.29844-31104.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.29844-31104.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.29844-31104.Ar_EST_120301b_c13324%7Cpeptidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17579%7Ccafy.for.30948-32538.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.30948-32538.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.30948-32538.Ar_EST_120301b_c17579%7Ccafy.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17883%7Cme1-0071p-a159-f12-.for.32347-33734.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.32347-33734.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.32347-33734.Ar_EST_120301b_c17883%7Cme1-0071p-a159-f12-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c321%7Crho.for.33136-34435.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.33136-34435.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.33136-34435.Ar_EST_120301b_c321%7Crho.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1291%7Cgolgin.for.33807-35294.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.33807-35294.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.33807-35294.120301b_Contig1291%7Cgolgin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8512%7Crho.for.34096-36128.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.34096-36128.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.34096-36128.Ar_EST_120301b_c8512%7Crho.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4149%7Ccathepsin.for.36731-38881.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.36731-38881.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.36731-38881.Ar_EST_120301b_rep_c4149%7Ccathepsin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13879%7Ccathepsin.for.36811-38313.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.36811-38313.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.36811-38313.Ar_EST_120301b_rep_c13879%7Ccathepsin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig493%7Cgut.for.37440-38856.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.37440-38856.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.37440-38856.120301b_Contig493%7Cgut.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19441%7C40s.for.37322-38430.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.37322-38430.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.37322-38430.Ar_EST_120301b_rep_c19441%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6027%7Ccysteine.for.36676-38177.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.36676-38177.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.36676-38177.Ar_EST_120301b_rep_c6027%7Ccysteine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10144%7Ccathepsin.for.37675-38749.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.37675-38749.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.37675-38749.Ar_EST_120301b_rep_c10144%7Ccathepsin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12182%7Cdigestive.for.36933-38320.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.36933-38320.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.36933-38320.Ar_EST_120301b_rep_c12182%7Cdigestive.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1163%7Cprotein.for.40718-42567.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.40718-42567.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.40718-42567.120301b_Contig1163%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c335%7Cglucosamine-6-phosphate.for.42267-44759.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.42267-44759.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.42267-44759.Ar_EST_120301b_c335%7Cglucosamine-6-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13169%7Cglucosamine-6-phosphate.for.42266-43240.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.42266-43240.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.42266-43240.Ar_EST_120301b_c13169%7Cglucosamine-6-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12559%7Cendocytosis.for.45717-47004.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.45717-47004.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.45717-47004.Ar_EST_120301b_c12559%7Cendocytosis.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4411%7Cfyve-type.for.46516-48423.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.46516-48423.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.46516-48423.Ar_EST_120301b_rep_c4411%7Cfyve-type.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13558%7Ccomm.for.50698-52032.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.50698-52032.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.50698-52032.Ar_EST_120301b_c13558%7Ccomm.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15742%7Ctrna.for.52178-53369.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.52178-53369.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.52178-53369.Ar_EST_120301b_c15742%7Ctrna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16117%7Csmall.for.53247-54540.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.53247-54540.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.53247-54540.Ar_EST_120301b_c16117%7Csmall.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17565%7Cconserved.for.63969-65310.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.63969-65310.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.63969-65310.Ar_EST_120301b_c17565%7Cconserved.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:36 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:36 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:42 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:48 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:46 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:50 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:42 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:31 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090220%7Cgb%7CEFC43873%2E1%7C.for.18520-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18520-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18520-19886.gi%7C284090220%7Cgb%7CEFC43873%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085812%7Cgb%7CEFC39493%2E1%7C.for.18466-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18466-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18466-19886.gi%7C284085812%7Cgb%7CEFC39493%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095573%7Cgb%7CEFC49203%2E1%7C.for.18523-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18523-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18523-19886.gi%7C284095573%7Cgb%7CEFC49203%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092862%7Cgb%7CEFC46502%2E1%7C.for.18535-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18535-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18535-19886.gi%7C284092862%7Cgb%7CEFC46502%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090872%7Cgb%7CEFC44522%2E1%7C.for.18538-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18538-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18538-19886.gi%7C284090872%7Cgb%7CEFC44522%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081627%7Cgb%7CEFC35562%2E1%7C.for.18802-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18802-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18802-19886.gi%7C284081627%7Cgb%7CEFC35562%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095689%7Cgb%7CEFC49319%2E1%7C.for.18511-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18511-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18511-19886.gi%7C284095689%7Cgb%7CEFC49319%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090598%7Cgb%7CEFC44249%2E1%7C.for.18508-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18508-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18508-19886.gi%7C284090598%7Cgb%7CEFC44249%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092337%7Cgb%7CEFC45979%2E1%7C.for.18523-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18523-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18523-19886.gi%7C284092337%7Cgb%7CEFC45979%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087750%7Cgb%7CEFC41418%2E1%7C.for.18466-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18466-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18466-19886.gi%7C284087750%7Cgb%7CEFC41418%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097171%7Cgb%7CEFC50798%2E1%7C.for.18511-19877.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18511-19877.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18511-19877.gi%7C284097171%7Cgb%7CEFC50798%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096980%7Cgb%7CEFC50607%2E1%7C.for.18523-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18523-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18523-19886.gi%7C284096980%7Cgb%7CEFC50607%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082060%7Cgb%7CEFC35846%2E1%7C.for.18706-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18706-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18706-19886.gi%7C284082060%7Cgb%7CEFC35846%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089921%7Cgb%7CEFC43576%2E1%7C.for.18469-19655.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18469-19655.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18469-19655.gi%7C284089921%7Cgb%7CEFC43576%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090604%7Cgb%7CEFC44255%2E1%7C.for.18511-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18511-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18511-19886.gi%7C284090604%7Cgb%7CEFC44255%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093718%7Cgb%7CEFC47355%2E1%7C.for.18505-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18505-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18505-19886.gi%7C284093718%7Cgb%7CEFC47355%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087888%7Cgb%7CEFC41555%2E1%7C.for.18511-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18511-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18511-19886.gi%7C284087888%7Cgb%7CEFC41555%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080970%7Cgb%7CEFC35250%2E1%7C.for.23211-24283.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.23211-24283.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.23211-24283.gi%7C284080970%7Cgb%7CEFC35250%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091231%7Cgb%7CEFC44879%2E1%7C.for.22743-24259.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.22743-24259.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.22743-24259.gi%7C284091231%7Cgb%7CEFC44879%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096232%7Cgb%7CEFC49860%2E1%7C.for.24093-26257.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.24093-26257.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.24093-26257.gi%7C284096232%7Cgb%7CEFC49860%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090699%7Cgb%7CEFC44349%2E1%7C.for.27429-30997.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.27429-30997.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.27429-30997.gi%7C284090699%7Cgb%7CEFC44349%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095545%7Cgb%7CEFC49175%2E1%7C.for.28112-31000.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.28112-31000.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.28112-31000.gi%7C284095545%7Cgb%7CEFC49175%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082178%7Cgb%7CEFC35938%2E1%7C.for.38304-39589.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.38304-39589.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.38304-39589.gi%7C284082178%7Cgb%7CEFC35938%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087427%7Cgb%7CEFC41097%2E1%7C.for.38304-39589.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.38304-39589.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.38304-39589.gi%7C284087427%7Cgb%7CEFC41097%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092869%7Cgb%7CEFC46509%2E1%7C.for.40475-43005.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.40475-43005.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.40475-43005.gi%7C284092869%7Cgb%7CEFC46509%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094373%7Cgb%7CEFC48007%2E1%7C.for.41096-42963.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.41096-42963.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.41096-42963.gi%7C284094373%7Cgb%7CEFC48007%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096359%7Cgb%7CEFC49987%2E1%7C.for.42289-45022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.42289-45022.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.42289-45022.gi%7C284096359%7Cgb%7CEFC49987%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090005%7Cgb%7CEFC43659%2E1%7C.for.46531-48269.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.46531-48269.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.46531-48269.gi%7C284090005%7Cgb%7CEFC43659%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087223%7Cgb%7CEFC40894%2E1%7C.for.50687-52053.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.50687-52053.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.50687-52053.gi%7C284087223%7Cgb%7CEFC40894%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080992%7Cgb%7CEFC35256%2E1%7C.for.53422-54539.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.53422-54539.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.53422-54539.gi%7C284080992%7Cgb%7CEFC35256%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.55918-58235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55918-58235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55918-58235.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.for.55918-58208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55918-58208.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55918-58208.gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.for.55927-58211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55927-58211.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55927-58211.gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.for.55918-57080.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55918-57080.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55918-57080.gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.for.55963-57080.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55963-57080.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55963-57080.gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.for.55930-57101.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55930-57101.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55930-57101.gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.for.55918-58214.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55918-58214.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55918-58214.gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.for.55843-58235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55843-58235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55843-58235.gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090146%7Cgb%7CEFC43799%2E1%7C.for.55921-58211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55921-58211.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55921-58211.gi%7C284090146%7Cgb%7CEFC43799%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.for.55927-58559.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55927-58559.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55927-58559.gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.for.55873-58295.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55873-58295.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55873-58295.gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.for.55870-58211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55870-58211.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55870-58211.gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.for.55798-58208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55798-58208.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55798-58208.gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.for.55996-56951.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55996-56951.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55996-56951.gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086531%7Cgb%7CEFC40207%2E1%7C.for.55927-57146.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55927-57146.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55927-57146.gi%7C284086531%7Cgb%7CEFC40207%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.for.55834-58217.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55834-58217.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55834-58217.gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090143%7Cgb%7CEFC43796%2E1%7C.for.55921-58211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55921-58211.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55921-58211.gi%7C284090143%7Cgb%7CEFC43796%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.for.55930-58211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55930-58211.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55930-58211.gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080808%7Cgb%7CEFC35194%2E1%7C.for.55927-57038.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55927-57038.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55927-57038.gi%7C284080808%7Cgb%7CEFC35194%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.for.55963-57038.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55963-57038.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55963-57038.gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:11 now processing 0 total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:11 now processing 0 ...processing 0 of 17 ...processing 1 of 17 ...processing 2 of 17 ...processing 3 of 17 ...processing 4 of 17 ...processing 5 of 17 ...processing 6 of 17 ...processing 7 of 17 ...processing 8 of 17 ...processing 9 of 17 ...processing 10 of 17 ...processing 11 of 17 ...processing 12 of 17 ...processing 13 of 17 ...processing 14 of 17 ...processing 15 of 17 ...processing 16 of 17 total clusters:11 now processing 0 total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 total clusters:11 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 15 ...processing 1 of 15 ...processing 2 of 15 ...processing 3 of 15 ...processing 4 of 15 ...processing 5 of 15 ...processing 6 of 15 ...processing 7 of 15 ...processing 8 of 15 ...processing 9 of 15 ...processing 10 of 15 ...processing 11 of 15 ...processing 12 of 15 ...processing 13 of 15 ...processing 14 of 15 total clusters:7 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:7 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:15 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.0-825.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.0-825.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.0-825.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.2349-3127.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.2349-3127.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.2349-3127.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.4180-4964.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.4180-4964.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.4180-4964.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.7111-7995.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.7111-7995.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.7111-7995.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.9366-11049.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.9366-11049.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.9366-11049.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.24292-26057.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.24292-26057.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.24292-26057.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.27603-30800.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.27603-30800.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.27603-30800.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.36875-38681.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.36875-38681.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.36875-38681.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.40674-42805.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.40674-42805.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.40674-42805.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.50886-51853.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.50886-51853.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.50886-51853.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.53433-54340.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.53433-54340.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.53433-54340.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.56120-58359.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.56120-58359.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.56120-58359.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.64168-65110.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.64168-65110.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.64168-65110.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.4080-4900.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.4080-4900.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.4080-4900.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.18665-19754.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.18665-19754.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.18665-19754.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.22584-24083.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.22584-24083.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.22584-24083.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.30043-30904.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.30043-30904.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.30043-30904.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.31147-32360.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.31147-32360.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.31147-32360.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.33335-35934.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.33335-35934.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.33335-35934.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.38503-39487.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.38503-39487.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.38503-39487.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.42465-44822.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.42465-44822.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.42465-44822.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.45910-48232.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.45910-48232.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.45910-48232.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.52377-53169.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.52377-53169.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.52377-53169.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C5 Length: 131745 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:1 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:4 current j:0 j_size:4 current j:1 j_size:4 current j:2 j_size:4 current j:3 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C5.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C5.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:3 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4927%7Ccoatomer.for.1750-4580.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.1750-4580.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.1750-4580.Ar_EST_120301b_rep_c4927%7Ccoatomer.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c219%7Ccoatomer.for.1117-5675.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.1117-5675.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.1117-5675.Ar_EST_120301b_c219%7Ccoatomer.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5068%7Cprotein.for.999-2306.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.999-2306.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.999-2306.Ar_EST_120301b_rep_c5068%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1870%7Cshort-chain.for.7529-8815.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.7529-8815.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.7529-8815.Ar_EST_120301b_c1870%7Cshort-chain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13983%7Cglycerate.for.9016-10532.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9016-10532.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9016-10532.Ar_EST_120301b_c13983%7Cglycerate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2872%7Cglycerate.for.9011-10422.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9011-10422.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9011-10422.Ar_EST_120301b_c2872%7Cglycerate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1884%7Crho.for.9854-11280.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9854-11280.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9854-11280.Ar_EST_120301b_c1884%7Crho.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18292%7C---NA---.for.11079-12444.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.11079-12444.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.11079-12444.Ar_EST_120301b_c18292%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9251%7Cadenylate.for.11875-13224.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.11875-13224.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.11875-13224.Ar_EST_120301b_c9251%7Cadenylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1113%7Cprotein.for.15259-17252.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.15259-17252.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.15259-17252.120301b_Contig1113%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10689%7Cendonuclease.for.16859-18277.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.16859-18277.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.16859-18277.Ar_EST_120301b_c10689%7Cendonuclease.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11369%7Cphospholipase.for.21668-22878.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.21668-22878.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.21668-22878.Ar_EST_120301b_c11369%7Cphospholipase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18303%7Chypothetical.for.23197-24457.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.23197-24457.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.23197-24457.Ar_EST_120301b_c18303%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig495%7Cprotein.for.26089-27731.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.26089-27731.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.26089-27731.120301b_Contig495%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c738%7Chypothetical.for.25998-27627.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.25998-27627.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.25998-27627.Ar_EST_120301b_c738%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16831%7C---NA---.for.26248-27437.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.26248-27437.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.26248-27437.Ar_EST_120301b_c16831%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3170%7Crna-binding.for.29265-30841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.29265-30841.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.29265-30841.Ar_EST_120301b_c3170%7Crna-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18861%7Csplicing.for.30193-31519.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.30193-31519.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.30193-31519.Ar_EST_120301b_c18861%7Csplicing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18342%7Cehahb38tr.for.31682-32618.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.31682-32618.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.31682-32618.Ar_EST_120301b_rep_c18342%7Cehahb38tr.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig330%7Cactin.for.31093-33168.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.31093-33168.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.31093-33168.120301b_Contig330%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19138%7Chypothetical.for.33677-35187.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.33677-35187.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.33677-35187.Ar_EST_120301b_c19138%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9985%7Clipase.for.33305-34844.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.33305-34844.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.33305-34844.Ar_EST_120301b_c9985%7Clipase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16685%7Ctranslation.for.35667-37110.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.35667-37110.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.35667-37110.Ar_EST_120301b_c16685%7Ctranslation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20389%7Csepticolysin.for.36823-38079.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.36823-38079.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.36823-38079.Ar_EST_120301b_rep_c20389%7Csepticolysin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7158%7Csepticolysin.for.36723-38078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.36723-38078.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.36723-38078.Ar_EST_120301b_rep_c7158%7Csepticolysin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1100%7Csepticolysin.for.36741-38079.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.36741-38079.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.36741-38079.120301b_Contig1100%7Csepticolysin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12800%7Cserine.for.39700-41118.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.39700-41118.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.39700-41118.Ar_EST_120301b_c12800%7Cserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12672%7Cserine.for.40155-41467.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.40155-41467.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.40155-41467.Ar_EST_120301b_c12672%7Cserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14883%7C0156836.for.41198-42449.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.41198-42449.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.41198-42449.Ar_EST_120301b_c14883%7C0156836.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c576%7Cpeptidase.for.42583-44087.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.42583-44087.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.42583-44087.Ar_EST_120301b_c576%7Cpeptidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14550%7Crcc1.for.46429-47518.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.46429-47518.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.46429-47518.Ar_EST_120301b_c14550%7Crcc1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3172%7Cpelecinus.for.48613-50486.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.48613-50486.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.48613-50486.Ar_EST_120301b_c3172%7Cpelecinus.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig705%7Cprobable.for.49720-51442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.49720-51442.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.49720-51442.120301b_Contig705%7Cprobable.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17286%7C1112934329288.for.50896-52235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.50896-52235.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.50896-52235.Ar_EST_120301b_c17286%7C1112934329288.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1584%7Cmyosin.for.51678-53058.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.51678-53058.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.51678-53058.Ar_EST_120301b_c1584%7Cmyosin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18785%7Criboflavin.for.52842-53791.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.52842-53791.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.52842-53791.Ar_EST_120301b_rep_c18785%7Criboflavin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19995%7Criboflavin.for.52637-53860.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.52637-53860.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.52637-53860.Ar_EST_120301b_c19995%7Criboflavin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9495%7Cperoxisome.for.53340-55004.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.53340-55004.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.53340-55004.Ar_EST_120301b_c9495%7Cperoxisome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14%7Cfk506-binding.for.54242-56219.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.54242-56219.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.54242-56219.Ar_EST_120301b_c14%7Cfk506-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17894%7Cbg01.for.57293-58491.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.57293-58491.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.57293-58491.Ar_EST_120301b_c17894%7Cbg01.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2318%7Chermansky-pudlak.for.58366-59946.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.58366-59946.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.58366-59946.Ar_EST_120301b_c2318%7Chermansky-pudlak.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13264%7Cphysarum04582.for.60446-61409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.60446-61409.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.60446-61409.Ar_EST_120301b_c13264%7Cphysarum04582.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig569%7Ctrehalose-6-phosphate.for.60904-62620.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.60904-62620.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.60904-62620.120301b_Contig569%7Ctrehalose-6-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1192%7Chypothetical.for.74768-76995.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.74768-76995.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.74768-76995.120301b_Contig1192%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c940%7C1445745_5_c15_062.for.76417-77860.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.76417-77860.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.76417-77860.Ar_EST_120301b_c940%7C1445745_5_c15_062.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19216%7Ctg.for.77340-78465.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.77340-78465.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.77340-78465.Ar_EST_120301b_rep_c19216%7Ctg.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8441%7Cankyrin.for.78567-80270.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.78567-80270.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.78567-80270.Ar_EST_120301b_c8441%7Cankyrin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3062%7Cnacht.for.78319-79781.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.78319-79781.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.78319-79781.Ar_EST_120301b_c3062%7Cnacht.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig922%7Cthioredoxin.for.81853-83382.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.81853-83382.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.81853-83382.120301b_Contig922%7Cthioredoxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1406%7Chx129285.for.81417-82703.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.81417-82703.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.81417-82703.Ar_EST_120301b_c1406%7Chx129285.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c884%7Ccci.for.83640-85075.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.83640-85075.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.83640-85075.Ar_EST_120301b_c884%7Ccci.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3232%7Csimilarity.for.82705-84656.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.82705-84656.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.82705-84656.Ar_EST_120301b_c3232%7Csimilarity.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15594%7Csimilarity.for.83031-84107.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.83031-84107.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.83031-84107.Ar_EST_120301b_c15594%7Csimilarity.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10733%7C---NA---.for.84023-85289.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.84023-85289.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.84023-85289.Ar_EST_120301b_c10733%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig164%7Cmisexpression.for.86591-88318.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.86591-88318.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.86591-88318.120301b_Contig164%7Cmisexpression.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2393%7Chypothetical.for.86080-87393.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.86080-87393.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.86080-87393.Ar_EST_120301b_c2393%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3126%7Cprotein.for.87842-89519.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.87842-89519.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.87842-89519.Ar_EST_120301b_c3126%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12848%7Caldo.for.89750-91167.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.89750-91167.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.89750-91167.Ar_EST_120301b_c12848%7Caldo.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1669%7C%28aldo.for.89843-91300.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.89843-91300.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.89843-91300.Ar_EST_120301b_c1669%7C%28aldo.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9784%7Chypothetical.for.90835-92394.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.90835-92394.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.90835-92394.Ar_EST_120301b_c9784%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1376%7Cpredicted.for.92016-93662.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.92016-93662.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.92016-93662.120301b_Contig1376%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19862%7Cicpl20102_cw46_f06.for.92623-93606.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.92623-93606.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.92623-93606.Ar_EST_120301b_c19862%7Cicpl20102_cw46_f06.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1340%7C---NA---.for.93186-94487.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.93186-94487.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.93186-94487.Ar_EST_120301b_c1340%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1082%7C---NA---.for.94235-95710.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.94235-95710.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.94235-95710.Ar_EST_120301b_c1082%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig308%7Cnad.for.95110-97107.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.95110-97107.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.95110-97107.120301b_Contig308%7Cnad.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14271%7Crna.for.101533-102830.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.101533-102830.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.101533-102830.Ar_EST_120301b_c14271%7Crna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15637%7Chypothetical.for.103277-104452.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.103277-104452.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.103277-104452.Ar_EST_120301b_c15637%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16787%7Ccchu.for.103813-105125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.103813-105125.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.103813-105125.Ar_EST_120301b_c16787%7Ccchu.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1482%7C30s.for.104418-105784.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.104418-105784.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.104418-105784.Ar_EST_120301b_c1482%7C30s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1205%7Cmdf180_4-28dpi_hb383.for.105373-106697.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.105373-106697.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.105373-106697.Ar_EST_120301b_c1205%7Cmdf180_4-28dpi_hb383.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c938%7Cduo.for.105969-107823.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.105969-107823.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.105969-107823.Ar_EST_120301b_c938%7Cduo.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10147%7C---NA---.for.107361-108436.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.107361-108436.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.107361-108436.Ar_EST_120301b_c10147%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17005%7Cfp072159.for.108422-109291.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.108422-109291.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.108422-109291.Ar_EST_120301b_c17005%7Cfp072159.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12429%7Csubunit.for.108615-109926.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.108615-109926.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.108615-109926.Ar_EST_120301b_c12429%7Csubunit.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10392%7Canolis.for.109947-111462.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.109947-111462.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.109947-111462.Ar_EST_120301b_c10392%7Canolis.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16466%7Cxre.for.114425-115636.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.114425-115636.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.114425-115636.Ar_EST_120301b_c16466%7Cxre.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c196%7Cankyrin.for.113280-115250.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.113280-115250.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.113280-115250.Ar_EST_120301b_c196%7Cankyrin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11093%7Cdomain-containing.for.115928-117488.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.115928-117488.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.115928-117488.Ar_EST_120301b_c11093%7Cdomain-containing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11883%7Cfq355161.for.118590-120174.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.118590-120174.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.118590-120174.Ar_EST_120301b_c11883%7Cfq355161.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15305%7Cccif.for.120353-121637.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.120353-121637.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.120353-121637.Ar_EST_120301b_c15305%7Cccif.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8899%7Csumo.for.120923-122601.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.120923-122601.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.120923-122601.Ar_EST_120301b_c8899%7Csumo.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5398%7Cgadus.for.123283-124857.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.123283-124857.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.123283-124857.Ar_EST_120301b_rep_c5398%7Cgadus.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c594%7Ccbxu.for.122875-124833.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.122875-124833.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.122875-124833.Ar_EST_120301b_c594%7Ccbxu.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9877%7Cubiquitin-activating.for.126067-128042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.126067-128042.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.126067-128042.Ar_EST_120301b_c9877%7Cubiquitin-activating.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:60 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:60 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:60 now processing 0 total clusters:60 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:60 now processing 0 total clusters:60 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:60 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:60 now processing 0 total clusters:60 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 total clusters:60 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:60 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:53 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:51 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:62 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:70 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:68 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:69 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:61 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:69 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:72 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:44 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092746%7Cgb%7CEFC46387%2E1%7C.for.1013-5621.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.1013-5621.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.1013-5621.gi%7C284092746%7Cgb%7CEFC46387%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083683%7Cgb%7CEFC37384%2E1%7C.for.5064-6702.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.5064-6702.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.5064-6702.gi%7C284083683%7Cgb%7CEFC37384%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088407%7Cgb%7CEFC42071%2E1%7C.for.8543-10559.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.8543-10559.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.8543-10559.gi%7C284088407%7Cgb%7CEFC42071%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085812%7Cgb%7CEFC39493%2E1%7C.for.9874-11247.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11247.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11247.gi%7C284085812%7Cgb%7CEFC39493%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090220%7Cgb%7CEFC43873%2E1%7C.for.9862-11235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9862-11235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9862-11235.gi%7C284090220%7Cgb%7CEFC43873%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095573%7Cgb%7CEFC49203%2E1%7C.for.9877-11238.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9877-11238.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9877-11238.gi%7C284095573%7Cgb%7CEFC49203%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083905%7Cgb%7CEFC37603%2E1%7C.for.9853-11214.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9853-11214.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9853-11214.gi%7C284083905%7Cgb%7CEFC37603%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092862%7Cgb%7CEFC46502%2E1%7C.for.9874-11241.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11241.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11241.gi%7C284092862%7Cgb%7CEFC46502%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089636%7Cgb%7CEFC43292%2E1%7C.for.9874-11250.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11250.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11250.gi%7C284089636%7Cgb%7CEFC43292%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081627%7Cgb%7CEFC35562%2E1%7C.for.9874-10892.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-10892.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-10892.gi%7C284081627%7Cgb%7CEFC35562%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093011%7Cgb%7CEFC46651%2E1%7C.for.9877-11235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9877-11235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9877-11235.gi%7C284093011%7Cgb%7CEFC46651%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090598%7Cgb%7CEFC44249%2E1%7C.for.9868-11235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9868-11235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9868-11235.gi%7C284090598%7Cgb%7CEFC44249%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093381%7Cgb%7CEFC47019%2E1%7C.for.9865-11244.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9865-11244.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9865-11244.gi%7C284093381%7Cgb%7CEFC47019%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087750%7Cgb%7CEFC41418%2E1%7C.for.9874-11241.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11241.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11241.gi%7C284087750%7Cgb%7CEFC41418%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097171%7Cgb%7CEFC50798%2E1%7C.for.9955-11235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9955-11235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9955-11235.gi%7C284097171%7Cgb%7CEFC50798%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084253%7Cgb%7CEFC37948%2E1%7C.for.9874-11247.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11247.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11247.gi%7C284084253%7Cgb%7CEFC37948%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082060%7Cgb%7CEFC35846%2E1%7C.for.9874-11082.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11082.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11082.gi%7C284082060%7Cgb%7CEFC35846%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089921%7Cgb%7CEFC43576%2E1%7C.for.10142-11211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.10142-11211.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.10142-11211.gi%7C284089921%7Cgb%7CEFC43576%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081289%7Cgb%7CEFC35375%2E1%7C.for.9874-11247.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11247.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11247.gi%7C284081289%7Cgb%7CEFC35375%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087888%7Cgb%7CEFC41555%2E1%7C.for.9868-11307.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9868-11307.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9868-11307.gi%7C284087888%7Cgb%7CEFC41555%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090604%7Cgb%7CEFC44255%2E1%7C.for.9874-11235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11235.gi%7C284090604%7Cgb%7CEFC44255%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093718%7Cgb%7CEFC47355%2E1%7C.for.9868-11235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9868-11235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9868-11235.gi%7C284093718%7Cgb%7CEFC47355%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092603%7Cgb%7CEFC46244%2E1%7C.for.9952-11253.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9952-11253.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9952-11253.gi%7C284092603%7Cgb%7CEFC46244%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095901%7Cgb%7CEFC49530%2E1%7C.for.15309-17452.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.15309-17452.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.15309-17452.gi%7C284095901%7Cgb%7CEFC49530%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.for.18476-19500.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18476-19500.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18476-19500.gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083993%7Cgb%7CEFC37690%2E1%7C.for.18125-19958.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18125-19958.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18125-19958.gi%7C284083993%7Cgb%7CEFC37690%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094055%7Cgb%7CEFC47690%2E1%7C.for.18263-19883.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18263-19883.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18263-19883.gi%7C284094055%7Cgb%7CEFC47690%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090579%7Cgb%7CEFC44230%2E1%7C.for.18263-19865.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18263-19865.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18263-19865.gi%7C284090579%7Cgb%7CEFC44230%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081402%7Cgb%7CEFC35430%2E1%7C.for.18428-19476.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18428-19476.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18428-19476.gi%7C284081402%7Cgb%7CEFC35430%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090447%7Cgb%7CEFC44099%2E1%7C.for.18257-19922.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18257-19922.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18257-19922.gi%7C284090447%7Cgb%7CEFC44099%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092196%7Cgb%7CEFC45839%2E1%7C.for.18269-19883.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18269-19883.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18269-19883.gi%7C284092196%7Cgb%7CEFC45839%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089069%7Cgb%7CEFC42729%2E1%7C.for.18263-19922.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18263-19922.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18263-19922.gi%7C284089069%7Cgb%7CEFC42729%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090909%7Cgb%7CEFC44558%2E1%7C.for.18458-19509.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18458-19509.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18458-19509.gi%7C284090909%7Cgb%7CEFC44558%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089047%7Cgb%7CEFC42707%2E1%7C.for.18263-19919.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18263-19919.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18263-19919.gi%7C284089047%7Cgb%7CEFC42707%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083998%7Cgb%7CEFC37695%2E1%7C.for.18269-19865.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18269-19865.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18269-19865.gi%7C284083998%7Cgb%7CEFC37695%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090070%7Cgb%7CEFC43724%2E1%7C.for.18380-19865.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18380-19865.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18380-19865.gi%7C284090070%7Cgb%7CEFC43724%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093175%7Cgb%7CEFC46814%2E1%7C.for.21409-23737.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.21409-23737.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.21409-23737.gi%7C284093175%7Cgb%7CEFC46814%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091296%7Cgb%7CEFC44943%2E1%7C.for.29978-31002.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.29978-31002.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.29978-31002.gi%7C284091296%7Cgb%7CEFC44943%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094539%7Cgb%7CEFC48173%2E1%7C.for.32411-34593.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.32411-34593.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.32411-34593.gi%7C284094539%7Cgb%7CEFC48173%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082502%7Cgb%7CEFC36219%2E1%7C.for.34706-36121.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.34706-36121.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.34706-36121.gi%7C284082502%7Cgb%7CEFC36219%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085459%7Cgb%7CEFC39143%2E1%7C.for.35447-37131.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.35447-37131.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.35447-37131.gi%7C284085459%7Cgb%7CEFC39143%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086511%7Cgb%7CEFC40187%2E1%7C.for.39688-41618.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.39688-41618.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.39688-41618.gi%7C284086511%7Cgb%7CEFC40187%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091530%7Cgb%7CEFC45176%2E1%7C.for.39691-41822.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.39691-41822.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.39691-41822.gi%7C284091530%7Cgb%7CEFC45176%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083230%7Cgb%7CEFC36935%2E1%7C.for.39673-41822.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.39673-41822.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.39673-41822.gi%7C284083230%7Cgb%7CEFC36935%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089725%7Cgb%7CEFC43381%2E1%7C.for.49693-51284.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.49693-51284.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.49693-51284.gi%7C284089725%7Cgb%7CEFC43381%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097201%7Cgb%7CEFC50828%2E1%7C.for.52586-53864.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.52586-53864.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.52586-53864.gi%7C284097201%7Cgb%7CEFC50828%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081386%7Cgb%7CEFC35420%2E1%7C.for.55094-56238.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55094-56238.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55094-56238.gi%7C284081386%7Cgb%7CEFC35420%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097061%7Cgb%7CEFC50688%2E1%7C.for.55097-56157.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55097-56157.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55097-56157.gi%7C284097061%7Cgb%7CEFC50688%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095747%7Cgb%7CEFC49377%2E1%7C.for.55097-56211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55097-56211.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55097-56211.gi%7C284095747%7Cgb%7CEFC49377%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088080%7Cgb%7CEFC41746%2E1%7C.for.55097-56232.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55097-56232.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55097-56232.gi%7C284088080%7Cgb%7CEFC41746%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092504%7Cgb%7CEFC46146%2E1%7C.for.55103-56157.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55103-56157.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55103-56157.gi%7C284092504%7Cgb%7CEFC46146%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090684%7Cgb%7CEFC44334%2E1%7C.for.55094-56238.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55094-56238.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55094-56238.gi%7C284090684%7Cgb%7CEFC44334%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087392%7Cgb%7CEFC41062%2E1%7C.for.58401-60770.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.58401-60770.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.58401-60770.gi%7C284087392%7Cgb%7CEFC41062%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089364%7Cgb%7CEFC43022%2E1%7C.for.60972-62488.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.60972-62488.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.60972-62488.gi%7C284089364%7Cgb%7CEFC43022%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081650%7Cgb%7CEFC35573%2E1%7C.for.62355-63987.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.62355-63987.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.62355-63987.gi%7C284081650%7Cgb%7CEFC35573%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091868%7Cgb%7CEFC45513%2E1%7C.for.62271-63430.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.62271-63430.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.62271-63430.gi%7C284091868%7Cgb%7CEFC45513%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082307%7Cgb%7CEFC36042%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284082307%7Cgb%7CEFC36042%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093856%7Cgb%7CEFC47492%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284093856%7Cgb%7CEFC47492%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085911%7Cgb%7CEFC39591%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284085911%7Cgb%7CEFC39591%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085981%7Cgb%7CEFC39661%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284085981%7Cgb%7CEFC39661%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087491%7Cgb%7CEFC41160%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284087491%7Cgb%7CEFC41160%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093843%7Cgb%7CEFC47479%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284093843%7Cgb%7CEFC47479%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095026%7Cgb%7CEFC48658%2E1%7C.for.71509-72458.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72458.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72458.gi%7C284095026%7Cgb%7CEFC48658%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090245%7Cgb%7CEFC43898%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284090245%7Cgb%7CEFC43898%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087527%7Cgb%7CEFC41196%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284087527%7Cgb%7CEFC41196%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083958%7Cgb%7CEFC37656%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284083958%7Cgb%7CEFC37656%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095626%7Cgb%7CEFC49256%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284095626%7Cgb%7CEFC49256%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089356%7Cgb%7CEFC43014%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284089356%7Cgb%7CEFC43014%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085878%7Cgb%7CEFC39558%2E1%7C.for.78714-80903.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.78714-80903.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.78714-80903.gi%7C284085878%7Cgb%7CEFC39558%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093226%7Cgb%7CEFC46865%2E1%7C.for.80969-83266.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.80969-83266.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.80969-83266.gi%7C284093226%7Cgb%7CEFC46865%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091245%7Cgb%7CEFC44893%2E1%7C.for.82819-84356.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.82819-84356.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.82819-84356.gi%7C284091245%7Cgb%7CEFC44893%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C11466181%7Cref%7CNP_066504%2E1%7C.for.104625-105715.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.104625-105715.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.104625-105715.gi%7C11466181%7Cref%7CNP_066504%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C10444216%7Cgb%7CAAG17782%2E1%7CAF288092_7.for.104625-105715.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.104625-105715.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.104625-105715.gi%7C10444216%7Cgb%7CAAG17782%2E1%7CAF288092_7.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096956%7Cgb%7CEFC50583%2E1%7C.for.104946-106012.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.104946-106012.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.104946-106012.gi%7C284096956%7Cgb%7CEFC50583%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084495%7Cgb%7CEFC38187%2E1%7C.for.117674-118960.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.117674-118960.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.117674-118960.gi%7C284084495%7Cgb%7CEFC38187%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088316%7Cgb%7CEFC41980%2E1%7C.for.124126-128091.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.124126-128091.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.124126-128091.gi%7C284088316%7Cgb%7CEFC41980%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:20 now processing 0 ...processing 0 of 18 ...processing 1 of 18 ...processing 2 of 18 ...processing 3 of 18 ...processing 4 of 18 ...processing 5 of 18 ...processing 6 of 18 ...processing 7 of 18 ...processing 8 of 18 ...processing 9 of 18 ...processing 10 of 18 ...processing 11 of 18 ...processing 12 of 18 ...processing 13 of 18 ...processing 14 of 18 ...processing 15 of 18 ...processing 16 of 18 ...processing 17 of 18 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:20 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:20 now processing 0 ...processing 0 of 12 ...processing 1 of 12 ...processing 2 of 12 ...processing 3 of 12 ...processing 4 of 12 ...processing 5 of 12 ...processing 6 of 12 ...processing 7 of 12 ...processing 8 of 12 ...processing 9 of 12 ...processing 10 of 12 ...processing 11 of 12 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:12 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 12 ...processing 1 of 12 ...processing 2 of 12 ...processing 3 of 12 ...processing 4 of 12 ...processing 5 of 12 ...processing 6 of 12 ...processing 7 of 12 ...processing 8 of 12 ...processing 9 of 12 ...processing 10 of 12 ...processing 11 of 12 total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:12 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 10 ...processing 1 of 10 ...processing 2 of 10 ...processing 3 of 10 ...processing 4 of 10 ...processing 5 of 10 ...processing 6 of 10 ...processing 7 of 10 ...processing 8 of 10 ...processing 9 of 10 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:24 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:24 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:24 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:24 now processing 0 total clusters:24 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:24 now processing 0 total clusters:24 now processing 0 total clusters:24 now processing 0 total clusters:24 now processing 0 total clusters:24 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:24 now processing 0 total clusters:24 now processing 0 total clusters:24 now processing 0 total clusters:24 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:24 now processing 0 total clusters:24 now processing 0 total clusters:24 now processing 0 total clusters:24 now processing 0 total clusters:24 now processing 0 total clusters:24 now processing 0 total clusters:24 now processing 0 total clusters:24 now processing 0 total clusters:24 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:24 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.7728-8620.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.7728-8620.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.7728-8620.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.10049-13027.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.10049-13027.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.10049-13027.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.15458-18087.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.15458-18087.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.15458-18087.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.21608-23537.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.21608-23537.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.21608-23537.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.26197-27427.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.26197-27427.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.26197-27427.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.29461-32968.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.29461-32968.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.29461-32968.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.36922-37878.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.36922-37878.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.36922-37878.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.39872-42249.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.39872-42249.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.39872-42249.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.42782-43887.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.42782-43887.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.42782-43887.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.46614-47318.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.46614-47318.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.46614-47318.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.48812-50286.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.48812-50286.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.48812-50286.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.51095-52858.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.51095-52858.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.51095-52858.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.53539-54804.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.53539-54804.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.53539-54804.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.57492-58310.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.57492-58310.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.57492-58310.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.60645-61220.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.60645-61220.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.60645-61220.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.62470-63787.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.62470-63787.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.62470-63787.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.71310-72258.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.71310-72258.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.71310-72258.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.74962-76795.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.74962-76795.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.74962-76795.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.78518-80070.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.78518-80070.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.78518-80070.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.81168-83182.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.81168-83182.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.81168-83182.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.86279-89319.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.86279-89319.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.86279-89319.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.89946-92194.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.89946-92194.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.89946-92194.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.101732-105584.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.101732-105584.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.101732-105584.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.108814-109726.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.108814-109726.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.108814-109726.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.110146-111262.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.110146-111262.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.110146-111262.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.116127-117288.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.116127-117288.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.116127-117288.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.118717-119974.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.118717-119974.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.118717-119974.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.120552-121441.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.120552-121441.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.120552-121441.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.123067-127891.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.123067-127891.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.123067-127891.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.1198-5475.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.1198-5475.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.1198-5475.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.8742-10359.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.8742-10359.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.8742-10359.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.18324-19758.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.18324-19758.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.18324-19758.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.23392-24257.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.23392-24257.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.23392-24257.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.33498-36931.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.33498-36931.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.33498-36931.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.49892-51242.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.49892-51242.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.49892-51242.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.52785-53664.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.52785-53664.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.52785-53664.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.54441-56032.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.54441-56032.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.54441-56032.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.58565-60570.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.58565-60570.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.58565-60570.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.61171-62288.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.61171-62288.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.61171-62288.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.76614-77660.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.76614-77660.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.76614-77660.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/40_0.82904-85103.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/40_0.82904-85103.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/40_0.82904-85103.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/41_0.93385-94287.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/41_0.93385-94287.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/41_0.93385-94287.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/42_0.94429-96907.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/42_0.94429-96907.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/42_0.94429-96907.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/43_0.105145-108236.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/43_0.105145-108236.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/43_0.105145-108236.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/44_0.113479-115436.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/44_0.113479-115436.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/44_0.113479-115436.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/45_0.121122-122453.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/45_0.121122-122453.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/45_0.121122-122453.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C6 Length: 122113 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:3 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:3 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:2 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:2 current j:0 j_size:2 current j:1 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C6.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C6.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9097%7Cendothelin-converting.for.123-1393.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.123-1393.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.123-1393.Ar_EST_120301b_c9097%7Cendothelin-converting.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1238%7Cchromosome.for.803-3026.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.803-3026.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.803-3026.Ar_EST_120301b_c1238%7Cchromosome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c561%7Chypothetical.for.2254-3973.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.2254-3973.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.2254-3973.Ar_EST_120301b_c561%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7092%7Chypothetical.for.2313-3425.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.2313-3425.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.2313-3425.Ar_EST_120301b_rep_c7092%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8999%7C---NA---.for.7519-9225.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.7519-9225.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.7519-9225.Ar_EST_120301b_c8999%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13174%7Cadp-ribosylation.for.15703-16832.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.15703-16832.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.15703-16832.Ar_EST_120301b_rep_c13174%7Cadp-ribosylation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1689%7Cvacuolar.for.15336-16737.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.15336-16737.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.15336-16737.Ar_EST_120301b_c1689%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9681%7Cvacuolar.for.15970-17826.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.15970-17826.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.15970-17826.Ar_EST_120301b_c9681%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14346%7Cvacuolar.for.17201-18217.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.17201-18217.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.17201-18217.Ar_EST_120301b_c14346%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3137%7Cdelta-1-pyrroline-5-carboxylate.for.19234-20841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.19234-20841.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.19234-20841.Ar_EST_120301b_c3137%7Cdelta-1-pyrroline-5-carboxylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18750%7Cdelta-1-pyrroline-5-carboxylate.for.19121-20728.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.19121-20728.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.19121-20728.Ar_EST_120301b_c18750%7Cdelta-1-pyrroline-5-carboxylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2477%7Cdelta-1-pyrroline-5-carboxylate.for.18215-20376.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.18215-20376.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.18215-20376.Ar_EST_120301b_c2477%7Cdelta-1-pyrroline-5-carboxylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19978%7Cdihydrolipoamide.for.21846-23160.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.21846-23160.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.21846-23160.Ar_EST_120301b_c19978%7Cdihydrolipoamide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig128%7Cdihydrolipoamide.for.20387-22977.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.20387-22977.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.20387-22977.120301b_Contig128%7Cdihydrolipoamide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8416%7Ctwo-component.for.22663-23931.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.22663-23931.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.22663-23931.Ar_EST_120301b_c8416%7Ctwo-component.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1919%7Csurface.for.24471-26129.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.24471-26129.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.24471-26129.Ar_EST_120301b_c1919%7Csurface.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17688%7Calpha-galactosidase.for.26917-28272.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.26917-28272.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.26917-28272.Ar_EST_120301b_c17688%7Calpha-galactosidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2981%7Cras.for.37609-39072.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.37609-39072.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.37609-39072.Ar_EST_120301b_c2981%7Cras.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11131%7Cras.for.36977-38575.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.36977-38575.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.36977-38575.Ar_EST_120301b_c11131%7Cras.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3153%7Cras.for.36079-37994.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.36079-37994.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.36079-37994.Ar_EST_120301b_c3153%7Cras.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2631%7Crasgef.for.38082-39579.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.38082-39579.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.38082-39579.Ar_EST_120301b_c2631%7Crasgef.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11259%7Chypothetical.for.39486-40750.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.39486-40750.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.39486-40750.Ar_EST_120301b_c11259%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14312%7Cmitochondrial.for.41003-42418.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.41003-42418.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.41003-42418.Ar_EST_120301b_c14312%7Cmitochondrial.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18904%7Cembryof101113a3.for.42698-44071.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.42698-44071.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.42698-44071.Ar_EST_120301b_rep_c18904%7Cembryof101113a3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16334%7Ccazo.for.45899-46844.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45899-46844.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45899-46844.Ar_EST_120301b_rep_c16334%7Ccazo.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig486%7Cmitochondrial.for.45155-47138.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45155-47138.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45155-47138.120301b_Contig486%7Cmitochondrial.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19473%7Ctrans-2-enoyl-.for.45838-46890.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45838-46890.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45838-46890.Ar_EST_120301b_c19473%7Ctrans-2-enoyl-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19766%7Ctrans-2-enoyl-.for.45298-46431.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45298-46431.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45298-46431.Ar_EST_120301b_rep_c19766%7Ctrans-2-enoyl-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13758%7Csuperoxide.for.46353-47705.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.46353-47705.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.46353-47705.Ar_EST_120301b_c13758%7Csuperoxide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15340%7C---NA---.for.48138-49353.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.48138-49353.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.48138-49353.Ar_EST_120301b_c15340%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12253%7Ccell.for.50027-51427.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.50027-51427.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.50027-51427.Ar_EST_120301b_c12253%7Ccell.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3614%7Ctryptophan.for.51706-53464.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.51706-53464.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.51706-53464.Ar_EST_120301b_c3614%7Ctryptophan.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3246%7Cbp441934.for.53432-54894.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.53432-54894.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.53432-54894.Ar_EST_120301b_c3246%7Cbp441934.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1844%7Cprotein.for.53045-54578.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.53045-54578.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.53045-54578.Ar_EST_120301b_c1844%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13342%7C---NA---.for.54901-55868.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.54901-55868.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.54901-55868.Ar_EST_120301b_c13342%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17156%7Ckiaa1052.for.55079-56460.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.55079-56460.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.55079-56460.Ar_EST_120301b_c17156%7Ckiaa1052.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12715%7Cfq318461.for.62217-63618.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.62217-63618.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.62217-63618.Ar_EST_120301b_c12715%7Cfq318461.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15940%7Cconserved.for.63630-65002.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.63630-65002.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.63630-65002.Ar_EST_120301b_c15940%7Cconserved.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1362%7C---NA---.for.64492-65876.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.64492-65876.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.64492-65876.Ar_EST_120301b_c1362%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15949%7C---NA---.for.68482-69658.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.68482-69658.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.68482-69658.Ar_EST_120301b_rep_c15949%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2106%7Cklhrrc001_12-e02.for.68183-69812.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.68183-69812.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.68183-69812.Ar_EST_120301b_c2106%7Cklhrrc001_12-e02.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15340%7C---NA---.for.73015-74155.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.73015-74155.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.73015-74155.Ar_EST_120301b_c15340%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20087%7Cprag-.for.74208-75368.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.74208-75368.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.74208-75368.Ar_EST_120301b_rep_c20087%7Cprag-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4808%7Cprag-.for.74191-75388.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.74191-75388.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.74191-75388.Ar_EST_120301b_rep_c4808%7Cprag-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8841%7Cag2_p7_l13_m13r.for.79972-81811.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.79972-81811.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.79972-81811.Ar_EST_120301b_c8841%7Cag2_p7_l13_m13r.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4471%7Cshort-chain.for.81454-83106.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.81454-83106.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.81454-83106.Ar_EST_120301b_rep_c4471%7Cshort-chain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5840%7Cshort-chain.for.81555-83050.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.81555-83050.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.81555-83050.Ar_EST_120301b_rep_c5840%7Cshort-chain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10307%7Cshort-chain.for.81484-82721.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.81484-82721.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.81484-82721.Ar_EST_120301b_rep_c10307%7Cshort-chain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig656%7Carmadillo.for.91033-93810.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.91033-93810.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.91033-93810.120301b_Contig656%7Carmadillo.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7896%7Cprotein.for.93047-95284.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.93047-95284.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.93047-95284.Ar_EST_120301b_c7896%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14083%7Chypothetical.for.97265-98467.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.97265-98467.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.97265-98467.Ar_EST_120301b_c14083%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14686%7Chypothetical.for.97297-98350.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.97297-98350.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.97297-98350.Ar_EST_120301b_c14686%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2116%7Chat.for.97324-98663.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.97324-98663.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.97324-98663.Ar_EST_120301b_c2116%7Chat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15340%7C---NA---.for.98833-100062.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.98833-100062.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.98833-100062.Ar_EST_120301b_c15340%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4652%7Catp-dependent.for.99963-102250.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.99963-102250.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.99963-102250.Ar_EST_120301b_rep_c4652%7Catp-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14242%7Catp.for.100109-101104.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.100109-101104.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.100109-101104.Ar_EST_120301b_c14242%7Catp.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12029%7Cpirin-related.for.102587-103992.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.102587-103992.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.102587-103992.Ar_EST_120301b_c12029%7Cpirin-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8398%7Cnadh.for.103646-104832.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.103646-104832.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.103646-104832.Ar_EST_120301b_rep_c8398%7Cnadh.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c775%7Cnadh.for.103680-104925.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.103680-104925.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.103680-104925.Ar_EST_120301b_c775%7Cnadh.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16811%7Cprotein.for.104900-106748.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.104900-106748.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.104900-106748.Ar_EST_120301b_c16811%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig532%7Cdnaj.for.108502-110436.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108502-110436.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108502-110436.120301b_Contig532%7Cdnaj.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5627%7Cdnaj.for.108299-110431.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108299-110431.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108299-110431.Ar_EST_120301b_rep_c5627%7Cdnaj.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6751%7Cdnaj.for.108406-110044.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108406-110044.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108406-110044.Ar_EST_120301b_rep_c6751%7Cdnaj.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19114%7Cccih.for.110438-111717.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.110438-111717.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.110438-111717.Ar_EST_120301b_c19114%7Cccih.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8278%7Ccomplex.for.110596-111614.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.110596-111614.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.110596-111614.Ar_EST_120301b_c8278%7Ccomplex.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16738%7Cprotein.for.111320-112663.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.111320-112663.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.111320-112663.Ar_EST_120301b_c16738%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4485%7Clate.for.121338-122113.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.121338-122113.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.121338-122113.Ar_EST_120301b_rep_c4485%7Clate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6023%7Chypothetical.for.121423-122113.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.121423-122113.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.121423-122113.Ar_EST_120301b_rep_c6023%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12513%7Cantifreeze.for.121306-122113.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.121306-122113.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.121306-122113.Ar_EST_120301b_rep_c12513%7Cantifreeze.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:71 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:53 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:58 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:78 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:59 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:72 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:67 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:66 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:50 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088158%7Cgb%7CEFC41823%2E1%7C.for.2365-4055.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.2365-4055.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.2365-4055.gi%7C284088158%7Cgb%7CEFC41823%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088143%7Cgb%7CEFC41808%2E1%7C.for.3371-6960.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.3371-6960.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.3371-6960.gi%7C284088143%7Cgb%7CEFC41808%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088065%7Cgb%7CEFC41731%2E1%7C.for.15266-18233.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.15266-18233.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.15266-18233.gi%7C284088065%7Cgb%7CEFC41731%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088066%7Cgb%7CEFC41732%2E1%7C.for.17441-18522.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.17441-18522.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.17441-18522.gi%7C284088066%7Cgb%7CEFC41732%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092276%7Cgb%7CEFC45919%2E1%7C.for.18360-20850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.18360-20850.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.18360-20850.gi%7C284092276%7Cgb%7CEFC45919%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094295%7Cgb%7CEFC47929%2E1%7C.for.20588-23148.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.20588-23148.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.20588-23148.gi%7C284094295%7Cgb%7CEFC47929%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094355%7Cgb%7CEFC47989%2E1%7C.for.20627-22068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.20627-22068.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.20627-22068.gi%7C284094355%7Cgb%7CEFC47989%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094493%7Cgb%7CEFC48127%2E1%7C.for.20579-23154.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.20579-23154.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.20579-23154.gi%7C284094493%7Cgb%7CEFC48127%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084633%7Cgb%7CEFC38324%2E1%7C.for.36113-38819.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.36113-38819.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.36113-38819.gi%7C284084633%7Cgb%7CEFC38324%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097160%7Cgb%7CEFC50787%2E1%7C.for.41048-43365.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.41048-43365.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.41048-43365.gi%7C284097160%7Cgb%7CEFC50787%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083887%7Cgb%7CEFC37585%2E1%7C.for.43995-45841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.43995-45841.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.43995-45841.gi%7C284083887%7Cgb%7CEFC37585%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088044%7Cgb%7CEFC41710%2E1%7C.for.45165-46912.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45165-46912.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45165-46912.gi%7C284088044%7Cgb%7CEFC41710%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083596%7Cgb%7CEFC37298%2E1%7C.for.46621-48068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.46621-48068.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.46621-48068.gi%7C284083596%7Cgb%7CEFC37298%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083542%7Cgb%7CEFC37244%2E1%7C.for.46621-48068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.46621-48068.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.46621-48068.gi%7C284083542%7Cgb%7CEFC37244%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085466%7Cgb%7CEFC39150%2E1%7C.for.51890-53804.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.51890-53804.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.51890-53804.gi%7C284085466%7Cgb%7CEFC39150%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088022%7Cgb%7CEFC41688%2E1%7C.for.55217-58498.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.55217-58498.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.55217-58498.gi%7C284088022%7Cgb%7CEFC41688%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094068%7Cgb%7CEFC47703%2E1%7C.for.57841-59500.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57841-59500.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57841-59500.gi%7C284094068%7Cgb%7CEFC47703%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093385%7Cgb%7CEFC47023%2E1%7C.for.58206-59248.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58206-59248.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58206-59248.gi%7C284093385%7Cgb%7CEFC47023%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091587%7Cgb%7CEFC45233%2E1%7C.for.58254-59266.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58254-59266.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58254-59266.gi%7C284091587%7Cgb%7CEFC45233%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093143%7Cgb%7CEFC46782%2E1%7C.for.57859-59518.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57859-59518.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57859-59518.gi%7C284093143%7Cgb%7CEFC46782%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085317%7Cgb%7CEFC39002%2E1%7C.for.58215-59287.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58215-59287.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58215-59287.gi%7C284085317%7Cgb%7CEFC39002%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.for.58239-59248.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58239-59248.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58239-59248.gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094136%7Cgb%7CEFC47771%2E1%7C.for.58200-59290.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58200-59290.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58200-59290.gi%7C284094136%7Cgb%7CEFC47771%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089231%7Cgb%7CEFC42890%2E1%7C.for.57859-59515.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57859-59515.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57859-59515.gi%7C284089231%7Cgb%7CEFC42890%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083993%7Cgb%7CEFC37690%2E1%7C.for.57853-59518.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57853-59518.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57853-59518.gi%7C284083993%7Cgb%7CEFC37690%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092366%7Cgb%7CEFC46008%2E1%7C.for.57856-59488.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57856-59488.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57856-59488.gi%7C284092366%7Cgb%7CEFC46008%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094875%7Cgb%7CEFC48508%2E1%7C.for.57856-59518.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57856-59518.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57856-59518.gi%7C284094875%7Cgb%7CEFC48508%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094163%7Cgb%7CEFC47798%2E1%7C.for.58227-59203.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58227-59203.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58227-59203.gi%7C284094163%7Cgb%7CEFC47798%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085986%7Cgb%7CEFC39666%2E1%7C.for.57838-59518.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57838-59518.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57838-59518.gi%7C284085986%7Cgb%7CEFC39666%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094832%7Cgb%7CEFC48465%2E1%7C.for.57856-59599.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57856-59599.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57856-59599.gi%7C284094832%7Cgb%7CEFC48465%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088361%7Cgb%7CEFC42025%2E1%7C.for.57841-59518.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57841-59518.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57841-59518.gi%7C284088361%7Cgb%7CEFC42025%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097221%7Cgb%7CEFC50848%2E1%7C.for.60697-61847.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.60697-61847.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.60697-61847.gi%7C284097221%7Cgb%7CEFC50848%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094035%7Cgb%7CEFC47670%2E1%7C.for.67414-68339.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.67414-68339.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.67414-68339.gi%7C284094035%7Cgb%7CEFC47670%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093439%7Cgb%7CEFC47077%2E1%7C.for.67289-68478.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.67289-68478.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.67289-68478.gi%7C284093439%7Cgb%7CEFC47077%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085372%7Cgb%7CEFC39056%2E1%7C.for.73551-74923.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.73551-74923.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.73551-74923.gi%7C284085372%7Cgb%7CEFC39056%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.75922-77087.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77087.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77087.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.for.75925-77141.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77141.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77141.gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.for.75922-77129.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77129.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77129.gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.for.75916-77078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75916-77078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75916-77078.gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.for.75928-77075.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75928-77075.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75928-77075.gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085992%7Cgb%7CEFC39672%2E1%7C.for.75850-77639.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75850-77639.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75850-77639.gi%7C284085992%7Cgb%7CEFC39672%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.for.75925-77453.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77453.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77453.gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.for.75931-77072.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75931-77072.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75931-77072.gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094669%7Cgb%7CEFC48302%2E1%7C.for.75925-77129.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77129.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77129.gi%7C284094669%7Cgb%7CEFC48302%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084257%7Cgb%7CEFC37951%2E1%7C.for.75928-77915.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75928-77915.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75928-77915.gi%7C284084257%7Cgb%7CEFC37951%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.for.75901-77078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75901-77078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75901-77078.gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.for.75892-77078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75892-77078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75892-77078.gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.for.75874-77078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75874-77078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75874-77078.gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090289%7Cgb%7CEFC43941%2E1%7C.for.75877-77117.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75877-77117.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75877-77117.gi%7C284090289%7Cgb%7CEFC43941%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.for.75922-77237.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77237.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77237.gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090138%7Cgb%7CEFC43791%2E1%7C.for.75919-77417.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75919-77417.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75919-77417.gi%7C284090138%7Cgb%7CEFC43791%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.for.75925-77075.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77075.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77075.gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082687%7Cgb%7CEFC36400%2E1%7C.for.75901-77087.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75901-77087.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75901-77087.gi%7C284082687%7Cgb%7CEFC36400%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.for.75922-77087.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77087.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77087.gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093864%7Cgb%7CEFC47500%2E1%7C.for.75916-77162.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75916-77162.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75916-77162.gi%7C284093864%7Cgb%7CEFC47500%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091293%7Cgb%7CEFC44940%2E1%7C.for.75916-77120.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75916-77120.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75916-77120.gi%7C284091293%7Cgb%7CEFC44940%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.for.75925-77108.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77108.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77108.gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097003%7Cgb%7CEFC50630%2E1%7C.for.75883-77078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75883-77078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75883-77078.gi%7C284097003%7Cgb%7CEFC50630%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.for.75835-77141.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75835-77141.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75835-77141.gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.for.75880-77120.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75880-77120.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75880-77120.gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.for.75925-77129.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77129.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77129.gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086956%7Cgb%7CEFC40629%2E1%7C.for.75817-77225.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75817-77225.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75817-77225.gi%7C284086956%7Cgb%7CEFC40629%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090146%7Cgb%7CEFC43799%2E1%7C.for.75817-77162.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75817-77162.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75817-77162.gi%7C284090146%7Cgb%7CEFC43799%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082747%7Cgb%7CEFC36459%2E1%7C.for.75907-77084.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75907-77084.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75907-77084.gi%7C284082747%7Cgb%7CEFC36459%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097002%7Cgb%7CEFC50629%2E1%7C.for.75907-77108.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75907-77108.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75907-77108.gi%7C284097002%7Cgb%7CEFC50629%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.for.75922-77195.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77195.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77195.gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.for.75745-77108.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75745-77108.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75745-77108.gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.for.75835-77150.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75835-77150.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75835-77150.gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.for.75922-77126.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77126.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77126.gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087408%7Cgb%7CEFC41078%2E1%7C.for.75922-77078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77078.gi%7C284087408%7Cgb%7CEFC41078%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.for.75919-77162.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75919-77162.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75919-77162.gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.for.75913-77195.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75913-77195.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75913-77195.gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.for.75922-77135.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77135.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77135.gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.for.76000-77069.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.76000-77069.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.76000-77069.gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092204%7Cgb%7CEFC45847%2E1%7C.for.75856-77078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75856-77078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75856-77078.gi%7C284092204%7Cgb%7CEFC45847%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090154%7Cgb%7CEFC43807%2E1%7C.for.75817-77147.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75817-77147.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75817-77147.gi%7C284090154%7Cgb%7CEFC43807%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.for.75928-77132.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75928-77132.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75928-77132.gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082694%7Cgb%7CEFC36407%2E1%7C.for.75922-77162.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77162.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77162.gi%7C284082694%7Cgb%7CEFC36407%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.for.75574-77138.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75574-77138.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75574-77138.gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090243%7Cgb%7CEFC43896%2E1%7C.for.75895-77156.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75895-77156.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75895-77156.gi%7C284090243%7Cgb%7CEFC43896%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085724%7Cgb%7CEFC39406%2E1%7C.for.75922-77267.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77267.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77267.gi%7C284085724%7Cgb%7CEFC39406%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.for.75913-77078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75913-77078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75913-77078.gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092203%7Cgb%7CEFC45846%2E1%7C.for.75925-77102.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77102.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77102.gi%7C284092203%7Cgb%7CEFC45846%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.for.75931-77159.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75931-77159.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75931-77159.gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090143%7Cgb%7CEFC43796%2E1%7C.for.75817-77237.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75817-77237.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75817-77237.gi%7C284090143%7Cgb%7CEFC43796%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.for.75931-77408.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75931-77408.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75931-77408.gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096176%7Cgb%7CEFC49805%2E1%7C.for.75916-77168.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75916-77168.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75916-77168.gi%7C284096176%7Cgb%7CEFC49805%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085350%7Cgb%7CEFC39035%2E1%7C.for.75922-77111.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77111.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77111.gi%7C284085350%7Cgb%7CEFC39035%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087676%7Cgb%7CEFC41344%2E1%7C.for.75685-77141.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75685-77141.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75685-77141.gi%7C284087676%7Cgb%7CEFC41344%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.for.75922-77051.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77051.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77051.gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085335%7Cgb%7CEFC39020%2E1%7C.for.81508-83189.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.81508-83189.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.81508-83189.gi%7C284085335%7Cgb%7CEFC39020%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096729%7Cgb%7CEFC50356%2E1%7C.for.90990-95305.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.90990-95305.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.90990-95305.gi%7C284096729%7Cgb%7CEFC50356%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092459%7Cgb%7CEFC46101%2E1%7C.for.95606-96932.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.95606-96932.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.95606-96932.gi%7C284092459%7Cgb%7CEFC46101%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096805%7Cgb%7CEFC50432%2E1%7C.for.100142-102232.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.100142-102232.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.100142-102232.gi%7C284096805%7Cgb%7CEFC50432%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082010%7Cgb%7CEFC35809%2E1%7C.for.100359-101497.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.100359-101497.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.100359-101497.gi%7C284082010%7Cgb%7CEFC35809%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089472%7Cgb%7CEFC43129%2E1%7C.for.102769-104123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.102769-104123.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.102769-104123.gi%7C284089472%7Cgb%7CEFC43129%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086520%7Cgb%7CEFC40196%2E1%7C.for.102769-104123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.102769-104123.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.102769-104123.gi%7C284086520%7Cgb%7CEFC40196%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091621%7Cgb%7CEFC45267%2E1%7C.for.103802-104936.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.103802-104936.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.103802-104936.gi%7C284091621%7Cgb%7CEFC45267%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087655%7Cgb%7CEFC41323%2E1%7C.for.108344-109338.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108344-109338.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108344-109338.gi%7C284087655%7Cgb%7CEFC41323%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094750%7Cgb%7CEFC48383%2E1%7C.for.108338-109371.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108338-109371.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108338-109371.gi%7C284094750%7Cgb%7CEFC48383%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096189%7Cgb%7CEFC49818%2E1%7C.for.108344-109335.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108344-109335.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108344-109335.gi%7C284096189%7Cgb%7CEFC49818%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087657%7Cgb%7CEFC41325%2E1%7C.for.108344-109332.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108344-109332.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108344-109332.gi%7C284087657%7Cgb%7CEFC41325%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097268%7Cgb%7CEFC50895%2E1%7C.for.108329-109263.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108329-109263.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108329-109263.gi%7C284097268%7Cgb%7CEFC50895%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096576%7Cgb%7CEFC50204%2E1%7C.for.108338-110424.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108338-110424.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108338-110424.gi%7C284096576%7Cgb%7CEFC50204%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 10 ...processing 1 of 10 ...processing 2 of 10 ...processing 3 of 10 ...processing 4 of 10 ...processing 5 of 10 ...processing 6 of 10 ...processing 7 of 10 ...processing 8 of 10 ...processing 9 of 10 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:21 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:21 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:21 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.322-3855.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.322-3855.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.322-3855.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.18414-22960.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.18414-22960.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.18414-22960.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.39685-40550.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.39685-40550.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.39685-40550.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.51811-53604.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.51811-53604.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.51811-53604.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.58040-59318.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.58040-59318.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.58040-59318.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.63829-65696.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.63829-65696.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.63829-65696.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.68382-69612.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.68382-69612.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.68382-69612.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.73154-75180.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.73154-75180.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.73154-75180.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.76115-77208.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.76115-77208.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.76115-77208.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.80171-82989.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.80171-82989.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.80171-82989.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.95805-96732.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.95805-96732.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.95805-96732.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.97430-98476.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.97430-98476.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.97430-98476.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.99032-99862.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.99032-99862.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.99032-99862.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.100162-102050.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.100162-102050.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.100162-102050.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.108498-110231.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.108498-110231.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.108498-110231.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.3570-6760.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.3570-6760.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.3570-6760.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.7718-9025.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.7718-9025.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.7718-9025.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.15465-18322.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.15465-18322.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.15465-18322.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.22851-23731.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.22851-23731.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.22851-23731.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.24670-25942.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.24670-25942.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.24670-25942.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.27116-28077.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.27116-28077.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.27116-28077.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.36278-38872.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.36278-38872.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.36278-38872.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.41202-43976.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.41202-43976.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.41202-43976.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.45364-47868.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.45364-47868.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.45364-47868.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.48329-49159.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.48329-49159.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.48329-49159.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.50226-51227.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.50226-51227.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.50226-51227.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.53242-54694.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.53242-54694.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.53242-54694.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.55100-56260.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.55100-56260.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.55100-56260.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.62416-63418.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.62416-63418.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.62416-63418.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.67488-68278.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.67488-68278.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.67488-68278.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.91189-95105.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.91189-95105.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.91189-95105.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.102786-104736.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.102786-104736.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.102786-104736.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.110637-111517.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.110637-111517.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.110637-111517.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.111519-112463.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.111519-112463.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.111519-112463.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C7 Length: 134939 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:55 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:38 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:33 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:53 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:43 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:56 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:37 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:44 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:53 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:40 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:10 current j:0 j_size:10 current j:1 j_size:10 current j:2 j_size:10 current j:3 j_size:10 current j:4 j_size:10 current j:5 j_size:10 current j:6 j_size:10 current j:7 j_size:10 current j:8 j_size:10 current j:9 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C7.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C7.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:13 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:6 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4485%7Clate.for.48-1639.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.48-1639.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.48-1639.Ar_EST_120301b_rep_c4485%7Clate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6023%7Chypothetical.for.133-1450.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.133-1450.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.133-1450.Ar_EST_120301b_rep_c6023%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12513%7Cantifreeze.for.16-1223.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.16-1223.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.16-1223.Ar_EST_120301b_rep_c12513%7Cantifreeze.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5923%7Cubiquitin.for.9-1509.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.9-1509.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.9-1509.Ar_EST_120301b_rep_c5923%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16388%7Crr1bs47tf.for.3291-4350.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.3291-4350.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.3291-4350.Ar_EST_120301b_c16388%7Crr1bs47tf.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11420%7Cc-4.for.12132-13718.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.12132-13718.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.12132-13718.Ar_EST_120301b_rep_c11420%7Cc-4.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6787%7Cc-4.for.11988-13571.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.11988-13571.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.11988-13571.Ar_EST_120301b_rep_c6787%7Cc-4.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11905%7Calpha.for.28565-29972.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.28565-29972.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.28565-29972.Ar_EST_120301b_c11905%7Calpha.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13284%7Cvacuolar.for.41047-42400.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.41047-42400.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.41047-42400.Ar_EST_120301b_c13284%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1689%7Cvacuolar.for.41819-43964.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.41819-43964.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.41819-43964.Ar_EST_120301b_c1689%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10762%7Cvacuolar.for.41624-42922.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.41624-42922.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.41624-42922.Ar_EST_120301b_c10762%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1374%7Cbase.for.45520-46917.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.45520-46917.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.45520-46917.Ar_EST_120301b_c1374%7Cbase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14203%7Cprotein.for.47262-48388.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.47262-48388.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.47262-48388.Ar_EST_120301b_c14203%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9392%7Calpha.for.49898-51378.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.49898-51378.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.49898-51378.Ar_EST_120301b_c9392%7Calpha.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1168%7Cprobable.for.55493-56901.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.55493-56901.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.55493-56901.Ar_EST_120301b_c1168%7Cprobable.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12300%7Cp-type.for.54632-56292.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54632-56292.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54632-56292.Ar_EST_120301b_c12300%7Cp-type.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13768%7Cp-type.for.56376-58077.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.56376-58077.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.56376-58077.Ar_EST_120301b_c13768%7Cp-type.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1093%7Cbiotinidase.for.57625-59775.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.57625-59775.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.57625-59775.120301b_Contig1093%7Cbiotinidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13105%7Cchloride.for.60848-62090.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.60848-62090.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.60848-62090.Ar_EST_120301b_c13105%7Cchloride.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11503%7Cchloride.for.61480-62910.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.61480-62910.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.61480-62910.Ar_EST_120301b_c11503%7Cchloride.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10696%7Cdynein.for.63572-64525.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.63572-64525.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.63572-64525.Ar_EST_120301b_c10696%7Cdynein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14804%7Cbp072254.for.69102-70291.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.69102-70291.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.69102-70291.Ar_EST_120301b_c14804%7Cbp072254.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3050%7Cviral.for.69616-71615.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.69616-71615.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.69616-71615.Ar_EST_120301b_c3050%7Cviral.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1063%7Cpredicted.for.70835-72329.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.70835-72329.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.70835-72329.Ar_EST_120301b_c1063%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2507%7C---NA---.for.71805-73298.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.71805-73298.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.71805-73298.Ar_EST_120301b_c2507%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c217%7Cprotein.for.80145-81818.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.80145-81818.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.80145-81818.Ar_EST_120301b_c217%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9172%7Cprotein.for.81335-83480.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.81335-83480.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.81335-83480.Ar_EST_120301b_c9172%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17870%7Ct-cell.for.89208-90299.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.89208-90299.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.89208-90299.Ar_EST_120301b_c17870%7Ct-cell.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11765%7Csolanesyl.for.92442-93928.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.92442-93928.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.92442-93928.Ar_EST_120301b_c11765%7Csolanesyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2548%7Cprotein-tyrosine.for.96640-97650.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.96640-97650.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.96640-97650.Ar_EST_120301b_c2548%7Cprotein-tyrosine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20445%7Cpyridine.for.97523-98612.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.97523-98612.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.97523-98612.Ar_EST_120301b_rep_c20445%7Cpyridine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c129%7Cnadh.for.97314-99592.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.97314-99592.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.97314-99592.Ar_EST_120301b_c129%7Cnadh.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19430%7Ctim50p.for.99275-100655.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.99275-100655.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.99275-100655.Ar_EST_120301b_c19430%7Ctim50p.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9578%7Ctim50p.for.99070-100422.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.99070-100422.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.99070-100422.Ar_EST_120301b_c9578%7Ctim50p.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3058%7Cprotein.for.100740-102763.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.100740-102763.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.100740-102763.Ar_EST_120301b_c3058%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12267%7Cat3g52930-like.for.102247-103458.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.102247-103458.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.102247-103458.Ar_EST_120301b_c12267%7Cat3g52930-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3718%7Cdienelactone.for.103910-105498.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.103910-105498.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.103910-105498.Ar_EST_120301b_c3718%7Cdienelactone.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20209%7Cribosomal.for.106394-107638.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106394-107638.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106394-107638.Ar_EST_120301b_rep_c20209%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3985%7C40s.for.105944-107655.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.105944-107655.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.105944-107655.Ar_EST_120301b_c3985%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5446%7Cribosomal.for.106398-107634.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106398-107634.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106398-107634.Ar_EST_120301b_rep_c5446%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18562%7C40s.for.106159-107137.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106159-107137.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106159-107137.Ar_EST_120301b_c18562%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6169%7C40s.for.105976-107196.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.105976-107196.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.105976-107196.Ar_EST_120301b_rep_c6169%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4920%7C40s.for.106100-107215.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106100-107215.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106100-107215.Ar_EST_120301b_rep_c4920%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6109%7C40s.for.106031-107257.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106031-107257.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106031-107257.Ar_EST_120301b_rep_c6109%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c785%7C5.for.109154-110971.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.109154-110971.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.109154-110971.Ar_EST_120301b_c785%7C5.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12153%7Cpredicted.for.110571-111898.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.110571-111898.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.110571-111898.Ar_EST_120301b_c12153%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12867%7C---NA---.for.122238-124136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.122238-124136.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.122238-124136.Ar_EST_120301b_c12867%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2650%7Cconserved.for.125607-127233.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.125607-127233.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.125607-127233.Ar_EST_120301b_c2650%7Cconserved.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2689%7Cnitella_74953_lrc40900_c.for.129843-131563.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.129843-131563.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.129843-131563.Ar_EST_120301b_c2689%7Cnitella_74953_lrc40900_c.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9169%7Cring.for.129877-133148.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.129877-133148.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.129877-133148.Ar_EST_120301b_c9169%7Cring.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12191%7Ccls_c.for.129992-133148.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.129992-133148.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.129992-133148.Ar_EST_120301b_c12191%7Ccls_c.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:30 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:30 now processing 0 total clusters:30 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:30 now processing 0 total clusters:30 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:30 now processing 0 total clusters:30 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:30 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:30 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:30 now processing 0 total clusters:30 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:30 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:29 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:42 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:42 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:57 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:48 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:38 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:38 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:47 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:33 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:32 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083691%7Cgb%7CEFC37392%2E1%7C.for.12012-13671.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.12012-13671.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.12012-13671.gi%7C284083691%7Cgb%7CEFC37392%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096883%7Cgb%7CEFC50510%2E1%7C.for.12012-13644.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.12012-13644.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.12012-13644.gi%7C284096883%7Cgb%7CEFC50510%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089652%7Cgb%7CEFC43308%2E1%7C.for.28293-29887.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.28293-29887.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.28293-29887.gi%7C284089652%7Cgb%7CEFC43308%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084087%7Cgb%7CEFC37783%2E1%7C.for.30299-33450.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33450.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33450.gi%7C284084087%7Cgb%7CEFC37783%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082474%7Cgb%7CEFC36192%2E1%7C.for.30299-33114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33114.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33114.gi%7C284082474%7Cgb%7CEFC36192%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082092%7Cgb%7CEFC35872%2E1%7C.for.30299-33114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33114.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33114.gi%7C284082092%7Cgb%7CEFC35872%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085337%7Cgb%7CEFC39022%2E1%7C.for.30350-33114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30350-33114.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30350-33114.gi%7C284085337%7Cgb%7CEFC39022%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083266%7Cgb%7CEFC36971%2E1%7C.for.30299-33114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33114.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33114.gi%7C284083266%7Cgb%7CEFC36971%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083922%7Cgb%7CEFC37620%2E1%7C.for.30440-33144.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30440-33144.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30440-33144.gi%7C284083922%7Cgb%7CEFC37620%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089683%7Cgb%7CEFC43339%2E1%7C.for.30443-33114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30443-33114.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30443-33114.gi%7C284089683%7Cgb%7CEFC43339%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082314%7Cgb%7CEFC36048%2E1%7C.for.30299-33114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33114.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33114.gi%7C284082314%7Cgb%7CEFC36048%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093921%7Cgb%7CEFC47557%2E1%7C.for.30299-33183.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33183.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33183.gi%7C284093921%7Cgb%7CEFC47557%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082806%7Cgb%7CEFC36517%2E1%7C.for.30443-33066.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30443-33066.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30443-33066.gi%7C284082806%7Cgb%7CEFC36517%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082136%7Cgb%7CEFC35906%2E1%7C.for.30299-33183.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33183.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33183.gi%7C284082136%7Cgb%7CEFC35906%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085875%7Cgb%7CEFC39555%2E1%7C.for.30440-33108.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30440-33108.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30440-33108.gi%7C284085875%7Cgb%7CEFC39555%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080810%7Cgb%7CEFC35195%2E1%7C.for.30419-32517.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30419-32517.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30419-32517.gi%7C284080810%7Cgb%7CEFC35195%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090094%7Cgb%7CEFC43748%2E1%7C.for.34017-35008.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.34017-35008.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.34017-35008.gi%7C284090094%7Cgb%7CEFC43748%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088066%7Cgb%7CEFC41732%2E1%7C.for.40616-41691.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.40616-41691.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.40616-41691.gi%7C284088066%7Cgb%7CEFC41732%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088065%7Cgb%7CEFC41731%2E1%7C.for.40911-43775.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.40911-43775.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.40911-43775.gi%7C284088065%7Cgb%7CEFC41731%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089788%7Cgb%7CEFC43443%2E1%7C.for.54064-58018.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54064-58018.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54064-58018.gi%7C284089788%7Cgb%7CEFC43443%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088559%7Cgb%7CEFC42222%2E1%7C.for.54067-57919.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57919.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57919.gi%7C284088559%7Cgb%7CEFC42222%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092821%7Cgb%7CEFC46461%2E1%7C.for.54040-58018.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54040-58018.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54040-58018.gi%7C284092821%7Cgb%7CEFC46461%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083022%7Cgb%7CEFC36730%2E1%7C.for.54067-57955.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57955.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57955.gi%7C284083022%7Cgb%7CEFC36730%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093552%7Cgb%7CEFC47189%2E1%7C.for.54067-57922.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57922.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57922.gi%7C284093552%7Cgb%7CEFC47189%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085695%7Cgb%7CEFC39377%2E1%7C.for.54067-57922.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57922.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57922.gi%7C284085695%7Cgb%7CEFC39377%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085694%7Cgb%7CEFC39376%2E1%7C.for.54067-57922.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57922.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57922.gi%7C284085694%7Cgb%7CEFC39376%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082133%7Cgb%7CEFC35904%2E1%7C.for.56298-57955.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.56298-57955.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.56298-57955.gi%7C284082133%7Cgb%7CEFC35904%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091674%7Cgb%7CEFC45319%2E1%7C.for.65466-67930.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.65466-67930.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.65466-67930.gi%7C284091674%7Cgb%7CEFC45319%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091345%7Cgb%7CEFC44992%2E1%7C.for.67823-69659.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.67823-69659.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.67823-69659.gi%7C284091345%7Cgb%7CEFC44992%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093228%7Cgb%7CEFC46867%2E1%7C.for.67832-69371.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.67832-69371.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.67832-69371.gi%7C284093228%7Cgb%7CEFC46867%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090440%7Cgb%7CEFC44092%2E1%7C.for.81166-83419.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.81166-83419.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.81166-83419.gi%7C284090440%7Cgb%7CEFC44092%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095446%7Cgb%7CEFC49077%2E1%7C.for.81166-83413.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.81166-83413.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.81166-83413.gi%7C284095446%7Cgb%7CEFC49077%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095286%7Cgb%7CEFC48917%2E1%7C.for.81169-83440.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.81169-83440.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.81169-83440.gi%7C284095286%7Cgb%7CEFC48917%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.86027-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89034.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.for.86030-89022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89022.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89022.gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.for.86030-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.for.86033-89028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86033-89028.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86033-89028.gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.for.86027-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89034.gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.for.85979-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.85979-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.85979-89034.gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090673%7Cgb%7CEFC44323%2E1%7C.for.86069-88737.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86069-88737.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86069-88737.gi%7C284090673%7Cgb%7CEFC44323%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094669%7Cgb%7CEFC48302%2E1%7C.for.86030-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.gi%7C284094669%7Cgb%7CEFC48302%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.for.86036-89439.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89439.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89439.gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.for.86012-89022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86012-89022.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86012-89022.gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.for.86030-88998.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-88998.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-88998.gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.for.86027-89037.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89037.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89037.gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.for.86030-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090138%7Cgb%7CEFC43791%2E1%7C.for.86015-89466.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86015-89466.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86015-89466.gi%7C284090138%7Cgb%7CEFC43791%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.for.86027-89064.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89064.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89064.gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.for.86027-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89034.gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.for.86042-89022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86042-89022.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86042-89022.gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.for.86036-89028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89028.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89028.gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093864%7Cgb%7CEFC47500%2E1%7C.for.86030-89424.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89424.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89424.gi%7C284093864%7Cgb%7CEFC47500%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.for.86030-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091293%7Cgb%7CEFC44940%2E1%7C.for.86021-89028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86021-89028.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86021-89028.gi%7C284091293%7Cgb%7CEFC44940%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097003%7Cgb%7CEFC50630%2E1%7C.for.86036-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89034.gi%7C284097003%7Cgb%7CEFC50630%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.for.85994-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.85994-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.85994-89034.gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.for.86030-89037.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89037.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89037.gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090146%7Cgb%7CEFC43799%2E1%7C.for.86024-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86024-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86024-89034.gi%7C284090146%7Cgb%7CEFC43799%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088717%7Cgb%7CEFC42379%2E1%7C.for.86030-89028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89028.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89028.gi%7C284088717%7Cgb%7CEFC42379%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.for.85871-89097.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.85871-89097.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.85871-89097.gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.for.86021-89061.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86021-89061.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86021-89061.gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.for.86015-89097.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86015-89097.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86015-89097.gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.for.86033-89082.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86033-89082.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86033-89082.gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.for.86024-89061.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86024-89061.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86024-89061.gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.for.86024-89052.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86024-89052.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86024-89052.gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084506%7Cgb%7CEFC38198%2E1%7C.for.86036-89049.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89049.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89049.gi%7C284084506%7Cgb%7CEFC38198%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096530%7Cgb%7CEFC50158%2E1%7C.for.86051-89022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86051-89022.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86051-89022.gi%7C284096530%7Cgb%7CEFC50158%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.for.86033-89043.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86033-89043.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86033-89043.gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.for.86225-88791.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86225-88791.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86225-88791.gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086531%7Cgb%7CEFC40207%2E1%7C.for.86030-89439.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89439.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89439.gi%7C284086531%7Cgb%7CEFC40207%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090243%7Cgb%7CEFC43896%2E1%7C.for.86030-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.gi%7C284090243%7Cgb%7CEFC43896%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.for.86030-89487.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89487.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89487.gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.for.86036-89022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89022.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89022.gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.for.86063-89115.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86063-89115.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86063-89115.gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.for.86063-89037.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86063-89037.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86063-89037.gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091599%7Cgb%7CEFC45245%2E1%7C.for.86069-89040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86069-89040.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86069-89040.gi%7C284091599%7Cgb%7CEFC45245%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085299%7Cgb%7CEFC38984%2E1%7C.for.86027-89025.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89025.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89025.gi%7C284085299%7Cgb%7CEFC38984%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084169%7Cgb%7CEFC37864%2E1%7C.for.92442-94214.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.92442-94214.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.92442-94214.gi%7C284084169%7Cgb%7CEFC37864%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093150%7Cgb%7CEFC46789%2E1%7C.for.96856-97871.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.96856-97871.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.96856-97871.gi%7C284093150%7Cgb%7CEFC46789%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086033%7Cgb%7CEFC39712%2E1%7C.for.97180-99460.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.97180-99460.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.97180-99460.gi%7C284086033%7Cgb%7CEFC39712%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097005%7Cgb%7CEFC50632%2E1%7C.for.99012-100303.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.99012-100303.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.99012-100303.gi%7C284097005%7Cgb%7CEFC50632%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094875%7Cgb%7CEFC48508%2E1%7C.for.100822-102855.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.100822-102855.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.100822-102855.gi%7C284094875%7Cgb%7CEFC48508%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090837%7Cgb%7CEFC44487%2E1%7C.for.101080-102267.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.101080-102267.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.101080-102267.gi%7C284090837%7Cgb%7CEFC44487%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087994%7Cgb%7CEFC41660%2E1%7C.for.106048-107651.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106048-107651.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106048-107651.gi%7C284087994%7Cgb%7CEFC41660%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:16 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:16 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:16 now processing 0 total clusters:16 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:13 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 ...processing 0 of 25 ...processing 1 of 25 ...processing 2 of 25 ...processing 3 of 25 ...processing 4 of 25 ...processing 5 of 25 ...processing 6 of 25 ...processing 7 of 25 ...processing 8 of 25 ...processing 9 of 25 ...processing 10 of 25 ...processing 11 of 25 ...processing 12 of 25 ...processing 13 of 25 ...processing 14 of 25 ...processing 15 of 25 ...processing 16 of 25 ...processing 17 of 25 ...processing 18 of 25 ...processing 19 of 25 ...trimming the rest total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:21 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:21 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 20 ...processing 1 of 20 ...processing 2 of 20 ...processing 3 of 20 ...processing 4 of 20 ...processing 5 of 20 ...processing 6 of 20 ...processing 7 of 20 ...processing 8 of 20 ...processing 9 of 20 ...processing 10 of 20 ...processing 11 of 20 ...processing 12 of 20 ...processing 13 of 20 ...processing 14 of 20 ...processing 15 of 20 ...processing 16 of 20 ...processing 17 of 20 ...processing 18 of 20 ...processing 19 of 20 ...trimming the rest ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:14 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.237-1449.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.237-1449.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.237-1449.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.3490-4150.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.3490-4150.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.3490-4150.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.12187-13518.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.12187-13518.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.12187-13518.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.30498-32914.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.30498-32914.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.30498-32914.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.40815-43764.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.40815-43764.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.40815-43764.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.45719-46717.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.45719-46717.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.45719-46717.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.54239-57877.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.54239-57877.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.54239-57877.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.65665-67730.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.65665-67730.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.65665-67730.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.69301-72129.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.69301-72129.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.69301-72129.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.86214-88915.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.86214-88915.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.86214-88915.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.92599-94014.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.92599-94014.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.92599-94014.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.96839-97671.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.96839-97671.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.96839-97671.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.100939-102655.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.100939-102655.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.100939-102655.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.109353-111698.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.109353-111698.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.109353-111698.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.434-1250.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.434-1250.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.434-1250.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.28492-29772.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.28492-29772.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.28492-29772.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.34216-34808.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.34216-34808.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.34216-34808.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.50087-51178.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.50087-51178.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.50087-51178.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.57824-59575.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.57824-59575.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.57824-59575.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.61045-61947.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.61045-61947.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.61045-61947.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.72004-73098.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.72004-73098.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.72004-73098.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.81365-83280.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.81365-83280.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.81365-83280.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.89359-90195.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.89359-90195.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.89359-90195.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.97379-100462.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.97379-100462.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.97379-100462.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.104109-105298.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.104109-105298.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.104109-105298.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.106175-107451.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.106175-107451.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.106175-107451.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C8 Length: 71281 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:3 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:5 current j:0 j_size:5 current j:1 j_size:5 current j:2 j_size:5 current j:3 j_size:5 current j:4 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C8.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C8.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11569%7Crna-binding.for.1136-2408.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.1136-2408.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.1136-2408.Ar_EST_120301b_c11569%7Crna-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1047%7Cdual.for.5428-7005.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.5428-7005.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.5428-7005.120301b_Contig1047%7Cdual.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9703%7Cwd40.for.7390-8926.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.7390-8926.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.7390-8926.Ar_EST_120301b_c9703%7Cwd40.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig523%7Cmetaxin.for.9216-10932.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.9216-10932.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.9216-10932.120301b_Contig523%7Cmetaxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14860%7Cmetaxin-3.for.9823-11135.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.9823-11135.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.9823-11135.Ar_EST_120301b_c14860%7Cmetaxin-3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17966%7Cmitogen-activated.for.10560-12367.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.10560-12367.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.10560-12367.Ar_EST_120301b_c17966%7Cmitogen-activated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11899%7Cmix.for.12967-14078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.12967-14078.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.12967-14078.Ar_EST_120301b_c11899%7Cmix.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14282%7C---NA---.for.13676-14878.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.13676-14878.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.13676-14878.Ar_EST_120301b_c14282%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3639%7C0298671.for.14112-16868.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.14112-16868.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.14112-16868.Ar_EST_120301b_c3639%7C0298671.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8179%7Cnormalized.for.16113-17345.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.16113-17345.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.16113-17345.Ar_EST_120301b_rep_c8179%7Cnormalized.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2878%7Cacyloxyacyl.for.18765-20718.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.18765-20718.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.18765-20718.Ar_EST_120301b_c2878%7Cacyloxyacyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig944%7Cmitochondrial.for.20293-21752.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.20293-21752.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.20293-21752.120301b_Contig944%7Cmitochondrial.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14537%7C---NA---.for.25006-25909.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.25006-25909.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.25006-25909.Ar_EST_120301b_c14537%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig939%7Cacid.for.24454-25816.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.24454-25816.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.24454-25816.120301b_Contig939%7Cacid.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c944%7Cest_lsaa_evv_1238232.for.26963-28583.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.26963-28583.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.26963-28583.Ar_EST_120301b_c944%7Cest_lsaa_evv_1238232.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14759%7C---NA---.for.29307-30510.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.29307-30510.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.29307-30510.Ar_EST_120301b_c14759%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12291%7Cest03036.for.28979-30318.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.28979-30318.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.28979-30318.Ar_EST_120301b_c12291%7Cest03036.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16855%7Cankyrin.for.32668-33901.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.32668-33901.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.32668-33901.Ar_EST_120301b_c16855%7Cankyrin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2487%7Ccawz.for.36801-38241.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.36801-38241.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.36801-38241.Ar_EST_120301b_c2487%7Ccawz.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9594%7Cy1842_erwct.for.39726-41093.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.39726-41093.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.39726-41093.Ar_EST_120301b_c9594%7Cy1842_erwct.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4074%7Cpredicted.for.44695-46110.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.44695-46110.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.44695-46110.Ar_EST_120301b_rep_c4074%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12747%7C---NA---.for.44884-46065.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.44884-46065.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.44884-46065.Ar_EST_120301b_rep_c12747%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17783%7Cadenylate.for.45407-46440.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.45407-46440.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.45407-46440.Ar_EST_120301b_rep_c17783%7Cadenylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5659%7Cadenylate.for.45408-46915.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.45408-46915.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.45408-46915.Ar_EST_120301b_rep_c5659%7Cadenylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4208%7Cadenylate.for.45358-46915.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.45358-46915.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.45358-46915.Ar_EST_120301b_rep_c4208%7Cadenylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c897%7C3.for.48834-50442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.48834-50442.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.48834-50442.Ar_EST_120301b_c897%7C3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c535%7Cubiquitin-specific.for.52735-53854.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.52735-53854.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.52735-53854.Ar_EST_120301b_c535%7Cubiquitin-specific.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c876%7Cprotein.for.51138-54171.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.51138-54171.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.51138-54171.Ar_EST_120301b_c876%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19537%7Cubiquitin-specific.for.51261-52540.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.51261-52540.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.51261-52540.Ar_EST_120301b_rep_c19537%7Cubiquitin-specific.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6146%7Cprotein.for.54235-55373.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54235-55373.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54235-55373.Ar_EST_120301b_rep_c6146%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig907%7Cubiquitin-conjugating.for.54109-55392.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54109-55392.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54109-55392.120301b_Contig907%7Cubiquitin-conjugating.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1366%7Cphospholipid-transporting.for.55948-58049.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55948-58049.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55948-58049.120301b_Contig1366%7Cphospholipid-transporting.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c820%7Caminophospholipid.for.57236-58683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.57236-58683.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.57236-58683.Ar_EST_120301b_c820%7Caminophospholipid.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18642%7Cprotein.for.55305-57062.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55305-57062.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55305-57062.Ar_EST_120301b_c18642%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1892%7Cprobable.for.54733-56157.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54733-56157.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54733-56157.Ar_EST_120301b_c1892%7Cprobable.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10313%7Cphospholipid-transporting.for.58014-59073.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.58014-59073.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.58014-59073.Ar_EST_120301b_c10313%7Cphospholipid-transporting.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15133%7Cpredicted.for.60971-62209.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.60971-62209.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.60971-62209.Ar_EST_120301b_c15133%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3416%7Cprotein.for.65768-67717.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.65768-67717.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.65768-67717.Ar_EST_120301b_c3416%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11057%7Cupf0061.for.66140-67643.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.66140-67643.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.66140-67643.Ar_EST_120301b_c11057%7Cupf0061.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20360%7Cacid.for.68216-69457.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68216-69457.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68216-69457.Ar_EST_120301b_rep_c20360%7Cacid.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12404%7Cacid.for.68179-69815.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68179-69815.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68179-69815.Ar_EST_120301b_rep_c12404%7Cacid.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig348%7Cacid.for.68030-69951.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68030-69951.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68030-69951.120301b_Contig348%7Cacid.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6228%7Ceri1.for.69349-70801.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.69349-70801.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.69349-70801.Ar_EST_120301b_rep_c6228%7Ceri1.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:35 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:34 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:34 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:40 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:38 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:27 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:33 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:29 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:33 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085834%7Cgb%7CEFC39515%2E1%7C.for.575-2502.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.575-2502.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.575-2502.gi%7C284085834%7Cgb%7CEFC39515%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C18033042%7Cgb%7CAAL56965%2E1%7CAF322049_1.for.3535-5826.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3535-5826.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3535-5826.gi%7C18033042%7Cgb%7CAAL56965%2E1%7CAF322049_1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094205%7Cgb%7CEFC47840%2E1%7C.for.3427-5844.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3427-5844.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3427-5844.gi%7C284094205%7Cgb%7CEFC47840%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083921%7Cgb%7CEFC37619%2E1%7C.for.3427-5808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3427-5808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3427-5808.gi%7C284083921%7Cgb%7CEFC37619%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094210%7Cgb%7CEFC47845%2E1%7C.for.3439-5862.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3439-5862.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3439-5862.gi%7C284094210%7Cgb%7CEFC47845%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089748%7Cgb%7CEFC43404%2E1%7C.for.3415-5961.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3415-5961.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3415-5961.gi%7C284089748%7Cgb%7CEFC43404%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095071%7Cgb%7CEFC48703%2E1%7C.for.6332-7440.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.6332-7440.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.6332-7440.gi%7C284095071%7Cgb%7CEFC48703%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083404%7Cgb%7CEFC37108%2E1%7C.for.7147-8987.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.7147-8987.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.7147-8987.gi%7C284083404%7Cgb%7CEFC37108%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089145%7Cgb%7CEFC42804%2E1%7C.for.10634-12660.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.10634-12660.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.10634-12660.gi%7C284089145%7Cgb%7CEFC42804%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095262%7Cgb%7CEFC48893%2E1%7C.for.11987-13041.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11987-13041.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11987-13041.gi%7C284095262%7Cgb%7CEFC48893%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091315%7Cgb%7CEFC44962%2E1%7C.for.11954-13208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11954-13208.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11954-13208.gi%7C284091315%7Cgb%7CEFC44962%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090821%7Cgb%7CEFC44471%2E1%7C.for.11948-13199.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11948-13199.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11948-13199.gi%7C284090821%7Cgb%7CEFC44471%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090721%7Cgb%7CEFC44371%2E1%7C.for.12086-13205.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.12086-13205.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.12086-13205.gi%7C284090721%7Cgb%7CEFC44371%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094778%7Cgb%7CEFC48411%2E1%7C.for.12038-13029.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.12038-13029.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.12038-13029.gi%7C284094778%7Cgb%7CEFC48411%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089020%7Cgb%7CEFC42680%2E1%7C.for.11930-13208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13208.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13208.gi%7C284089020%7Cgb%7CEFC42680%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094435%7Cgb%7CEFC48069%2E1%7C.for.11930-13041.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13041.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13041.gi%7C284094435%7Cgb%7CEFC48069%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084285%7Cgb%7CEFC37979%2E1%7C.for.11930-13208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13208.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13208.gi%7C284084285%7Cgb%7CEFC37979%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085637%7Cgb%7CEFC39319%2E1%7C.for.11930-13041.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13041.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13041.gi%7C284085637%7Cgb%7CEFC39319%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090223%7Cgb%7CEFC43876%2E1%7C.for.11948-13044.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11948-13044.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11948-13044.gi%7C284090223%7Cgb%7CEFC43876%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089016%7Cgb%7CEFC42676%2E1%7C.for.11951-13041.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11951-13041.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11951-13041.gi%7C284089016%7Cgb%7CEFC42676%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087164%7Cgb%7CEFC40836%2E1%7C.for.11939-13017.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11939-13017.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11939-13017.gi%7C284087164%7Cgb%7CEFC40836%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093747%7Cgb%7CEFC47384%2E1%7C.for.11930-13107.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13107.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13107.gi%7C284093747%7Cgb%7CEFC47384%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096426%7Cgb%7CEFC50054%2E1%7C.for.12095-13199.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.12095-13199.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.12095-13199.gi%7C284096426%7Cgb%7CEFC50054%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089587%7Cgb%7CEFC43244%2E1%7C.for.18781-20717.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.18781-20717.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.18781-20717.gi%7C284089587%7Cgb%7CEFC43244%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085037%7Cgb%7CEFC38724%2E1%7C.for.19961-21784.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.19961-21784.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.19961-21784.gi%7C284085037%7Cgb%7CEFC38724%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083566%7Cgb%7CEFC37268%2E1%7C.for.22837-24732.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.22837-24732.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.22837-24732.gi%7C284083566%7Cgb%7CEFC37268%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089709%7Cgb%7CEFC43365%2E1%7C.for.24184-25881.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.24184-25881.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.24184-25881.gi%7C284089709%7Cgb%7CEFC43365%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093351%7Cgb%7CEFC46989%2E1%7C.for.34683-36673.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.34683-36673.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.34683-36673.gi%7C284093351%7Cgb%7CEFC46989%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084118%7Cgb%7CEFC37814%2E1%7C.for.44305-45479.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.44305-45479.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.44305-45479.gi%7C284084118%7Cgb%7CEFC37814%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085702%7Cgb%7CEFC39384%2E1%7C.for.45412-46883.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.45412-46883.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.45412-46883.gi%7C284085702%7Cgb%7CEFC39384%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085662%7Cgb%7CEFC39344%2E1%7C.for.46121-48984.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.46121-48984.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.46121-48984.gi%7C284085662%7Cgb%7CEFC39344%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090469%7Cgb%7CEFC44121%2E1%7C.for.51128-54445.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.51128-54445.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.51128-54445.gi%7C284090469%7Cgb%7CEFC44121%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091315%7Cgb%7CEFC44962%2E1%7C.for.54190-55421.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54190-55421.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54190-55421.gi%7C284091315%7Cgb%7CEFC44962%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090821%7Cgb%7CEFC44471%2E1%7C.for.54184-55409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54184-55409.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54184-55409.gi%7C284090821%7Cgb%7CEFC44471%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089020%7Cgb%7CEFC42680%2E1%7C.for.54163-55403.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54163-55403.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54163-55403.gi%7C284089020%7Cgb%7CEFC42680%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094435%7Cgb%7CEFC48069%2E1%7C.for.54166-55394.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54166-55394.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54166-55394.gi%7C284094435%7Cgb%7CEFC48069%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084285%7Cgb%7CEFC37979%2E1%7C.for.54166-55403.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54166-55403.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54166-55403.gi%7C284084285%7Cgb%7CEFC37979%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085637%7Cgb%7CEFC39319%2E1%7C.for.54166-55391.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54166-55391.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54166-55391.gi%7C284085637%7Cgb%7CEFC39319%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090223%7Cgb%7CEFC43876%2E1%7C.for.54184-55418.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54184-55418.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54184-55418.gi%7C284090223%7Cgb%7CEFC43876%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093747%7Cgb%7CEFC47384%2E1%7C.for.54166-55400.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54166-55400.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54166-55400.gi%7C284093747%7Cgb%7CEFC47384%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096426%7Cgb%7CEFC50054%2E1%7C.for.54334-55418.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54334-55418.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54334-55418.gi%7C284096426%7Cgb%7CEFC50054%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089788%7Cgb%7CEFC43443%2E1%7C.for.55055-59474.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55055-59474.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55055-59474.gi%7C284089788%7Cgb%7CEFC43443%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092821%7Cgb%7CEFC46461%2E1%7C.for.54815-59459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54815-59459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54815-59459.gi%7C284092821%7Cgb%7CEFC46461%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083022%7Cgb%7CEFC36730%2E1%7C.for.55181-59459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55181-59459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55181-59459.gi%7C284083022%7Cgb%7CEFC36730%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093552%7Cgb%7CEFC47189%2E1%7C.for.55133-59459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55133-59459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55133-59459.gi%7C284093552%7Cgb%7CEFC47189%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085695%7Cgb%7CEFC39377%2E1%7C.for.54833-59474.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54833-59474.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54833-59474.gi%7C284085695%7Cgb%7CEFC39377%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082133%7Cgb%7CEFC35904%2E1%7C.for.55181-56826.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55181-56826.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55181-56826.gi%7C284082133%7Cgb%7CEFC35904%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085871%7Cgb%7CEFC39552%2E1%7C.for.68157-69939.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68157-69939.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68157-69939.gi%7C284085871%7Cgb%7CEFC39552%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084771%7Cgb%7CEFC38460%2E1%7C.for.68157-69939.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68157-69939.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68157-69939.gi%7C284084771%7Cgb%7CEFC38460%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088755%7Cgb%7CEFC42417%2E1%7C.for.68157-69939.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68157-69939.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68157-69939.gi%7C284088755%7Cgb%7CEFC42417%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089891%7Cgb%7CEFC43546%2E1%7C.for.68157-69939.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68157-69939.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68157-69939.gi%7C284089891%7Cgb%7CEFC43546%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096470%7Cgb%7CEFC50098%2E1%7C.for.69373-70748.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.69373-70748.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.69373-70748.gi%7C284096470%7Cgb%7CEFC50098%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092674%7Cgb%7CEFC46315%2E1%7C.for.69373-70766.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.69373-70766.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.69373-70766.gi%7C284092674%7Cgb%7CEFC46315%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:17 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:17 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:10 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:10 now processing 0 total clusters:10 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:10 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:13 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:13 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:13 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.3614-7246.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.3614-7246.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.3614-7246.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.9990-12460.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.9990-12460.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.9990-12460.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.13126-13878.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.13126-13878.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.13126-13878.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.16310-17234.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.16310-17234.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.16310-17234.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.18964-20518.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.18964-20518.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.18964-20518.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.24383-25709.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.24383-25709.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.24383-25709.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.29178-30310.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.29178-30310.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.29178-30310.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.32867-33701.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.32867-33701.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.32867-33701.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.34864-36473.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.34864-36473.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.34864-36473.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.39925-40893.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.39925-40893.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.39925-40893.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.44894-46715.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.44894-46715.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.44894-46715.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.61156-62009.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.61156-62009.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.61156-62009.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.68225-70601.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.68225-70601.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.68225-70601.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.774-2302.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.774-2302.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.774-2302.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.7589-8726.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.7589-8726.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.7589-8726.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.12129-13008.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.12129-13008.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.12129-13008.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.20160-21584.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.20160-21584.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.20160-21584.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.27162-28383.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.27162-28383.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.27162-28383.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.37000-38041.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.37000-38041.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.37000-38041.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.44504-45279.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.44504-45279.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.44504-45279.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.46320-48784.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.46320-48784.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.46320-48784.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.49033-50262.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.49033-50262.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.49033-50262.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.51327-54245.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.51327-54245.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.51327-54245.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.54308-59274.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.54308-59274.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.54308-59274.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.65959-67517.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.65959-67517.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.65959-67517.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C9 Length: 143137 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:54 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:66 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:41 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:64 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:58 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:64 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:49 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:63 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:57 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:57 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:6 current j:0 j_size:6 current j:1 j_size:6 current j:2 j_size:6 current j:3 j_size:6 current j:4 j_size:6 current j:5 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C9.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C9.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:10 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:10 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:4 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2247%7Cm7g%285.for.2328-3644.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.2328-3644.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.2328-3644.Ar_EST_120301b_c2247%7Cm7g%285.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1181%7Cglutaminase.for.3456-5008.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.3456-5008.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.3456-5008.Ar_EST_120301b_c1181%7Cglutaminase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17708%7Ccalcium-dependent.for.4667-5932.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.4667-5932.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.4667-5932.Ar_EST_120301b_c17708%7Ccalcium-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18654%7Chistone.for.7274-8455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7274-8455.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7274-8455.Ar_EST_120301b_rep_c18654%7Chistone.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20047%7Chistone.for.7291-8488.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7291-8488.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7291-8488.Ar_EST_120301b_rep_c20047%7Chistone.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15057%7Chypothetical.for.8269-9793.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.8269-9793.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.8269-9793.Ar_EST_120301b_c15057%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11519%7Ccarboxylesterase.for.15701-17156.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.15701-17156.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.15701-17156.Ar_EST_120301b_c11519%7Ccarboxylesterase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12514%7Cic0aaa79dd02rm1.for.20388-21618.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.20388-21618.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.20388-21618.Ar_EST_120301b_c12514%7Cic0aaa79dd02rm1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c122%7Cprotein.for.23727-25878.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.23727-25878.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.23727-25878.Ar_EST_120301b_c122%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig707%7Cstructure.for.23281-25022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.23281-25022.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.23281-25022.120301b_Contig707%7Cstructure.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig744%7Cvesicle.for.27994-29515.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.27994-29515.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.27994-29515.120301b_Contig744%7Cvesicle.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1993%7Ccof-like.for.30494-31813.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.30494-31813.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.30494-31813.Ar_EST_120301b_c1993%7Ccof-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11129%7Csl_.for.34342-35297.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.34342-35297.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.34342-35297.Ar_EST_120301b_rep_c11129%7Csl_.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17985%7Cheat.for.35244-36515.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35244-36515.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35244-36515.Ar_EST_120301b_c17985%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18115%7C---NA---.for.38253-39152.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.38253-39152.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.38253-39152.Ar_EST_120301b_c18115%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10295%7Cgh_hypt_01-01-10r_h06_.for.43281-44143.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.43281-44143.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.43281-44143.Ar_EST_120301b_c10295%7Cgh_hypt_01-01-10r_h06_.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5908%7Cest154.for.44564-45707.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44564-45707.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44564-45707.Ar_EST_120301b_rep_c5908%7Cest154.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17536%7Cace00011780.for.44608-45707.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44608-45707.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44608-45707.Ar_EST_120301b_rep_c17536%7Cace00011780.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19922%7Csbay-f90.for.45128-46080.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.45128-46080.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.45128-46080.Ar_EST_120301b_rep_c19922%7Csbay-f90.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18817%7Ccdn38p0008e01.for.44704-45722.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44704-45722.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44704-45722.Ar_EST_120301b_rep_c18817%7Ccdn38p0008e01.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13131%7Clucilia.for.44577-45900.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44577-45900.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44577-45900.Ar_EST_120301b_rep_c13131%7Clucilia.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7193%7Csoybean.for.44565-45685.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44565-45685.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44565-45685.Ar_EST_120301b_rep_c7193%7Csoybean.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig645%7Ccytochrome.for.44685-46267.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44685-46267.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44685-46267.120301b_Contig645%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7085%7Cfq079731.for.44762-45838.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44762-45838.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44762-45838.Ar_EST_120301b_rep_c7085%7Cfq079731.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig637%7Cest154.for.44568-45722.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44568-45722.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44568-45722.120301b_Contig637%7Cest154.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7059%7Cfp515931.for.44757-46264.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44757-46264.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44757-46264.Ar_EST_120301b_rep_c7059%7Cfp515931.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig630%7Chypothetical.for.44687-45807.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44687-45807.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44687-45807.120301b_Contig630%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17959%7Cms1-0010t-d100-c05-.for.45973-46909.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.45973-46909.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.45973-46909.Ar_EST_120301b_c17959%7Cms1-0010t-d100-c05-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13118%7C---NA---.for.46737-48076.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.46737-48076.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.46737-48076.Ar_EST_120301b_c13118%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19997%7Cendonuclease.for.49277-50751.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.49277-50751.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.49277-50751.Ar_EST_120301b_c19997%7Cendonuclease.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7711%7Cendonuclease.for.49011-50427.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.49011-50427.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.49011-50427.Ar_EST_120301b_c7711%7Cendonuclease.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1977%7Cendonuclease.for.49186-50532.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.49186-50532.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.49186-50532.Ar_EST_120301b_c1977%7Cendonuclease.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18660%7Cendonuclease.for.49180-50761.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.49180-50761.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.49180-50761.Ar_EST_120301b_c18660%7Cendonuclease.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14465%7Cpredicted.for.61002-62245.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.61002-62245.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.61002-62245.Ar_EST_120301b_c14465%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20376%7Cprotein.for.67849-70497.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.67849-70497.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.67849-70497.Ar_EST_120301b_c20376%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15791%7Cmoobi53tf.for.71085-72566.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.71085-72566.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.71085-72566.Ar_EST_120301b_c15791%7Cmoobi53tf.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12677%7Cmulti-sensor.for.76311-78090.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.76311-78090.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.76311-78090.Ar_EST_120301b_c12677%7Cmulti-sensor.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3335%7Caerobic.for.77895-79314.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.77895-79314.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.77895-79314.Ar_EST_120301b_c3335%7Caerobic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9381%7Chistidine.for.78583-79990.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.78583-79990.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.78583-79990.Ar_EST_120301b_c9381%7Chistidine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8780%7Cccgo.for.83976-85494.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.83976-85494.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.83976-85494.Ar_EST_120301b_c8780%7Cccgo.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10994%7Cct751907.for.87695-88589.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.87695-88589.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.87695-88589.Ar_EST_120301b_c10994%7Cct751907.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18336%7C---NA---.for.95445-96809.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.95445-96809.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.95445-96809.Ar_EST_120301b_c18336%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4188%7Chistone.for.101375-103374.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.101375-103374.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.101375-103374.Ar_EST_120301b_rep_c4188%7Chistone.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5666%7Cc-terminal.for.101564-103377.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.101564-103377.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.101564-103377.Ar_EST_120301b_rep_c5666%7Cc-terminal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19411%7C60s.for.101822-102850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.101822-102850.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.101822-102850.Ar_EST_120301b_rep_c19411%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15541%7Ctyrosyl-trna.for.104055-105009.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.104055-105009.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.104055-105009.Ar_EST_120301b_rep_c15541%7Ctyrosyl-trna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2608%7Ccarboxypeptidase.for.102704-105003.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.102704-105003.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.102704-105003.Ar_EST_120301b_c2608%7Ccarboxypeptidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19821%7Cprotein.for.104883-106741.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.104883-106741.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.104883-106741.Ar_EST_120301b_c19821%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8714%7Cfs351607.for.107515-109235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.107515-109235.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.107515-109235.Ar_EST_120301b_c8714%7Cfs351607.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1151%7Cprotein.for.109075-110229.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.109075-110229.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.109075-110229.Ar_EST_120301b_c1151%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8321%7Chypothetical.for.113081-114435.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.113081-114435.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.113081-114435.Ar_EST_120301b_c8321%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18042%7Cmembrane-associated.for.114907-116209.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.114907-116209.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.114907-116209.Ar_EST_120301b_c18042%7Cmembrane-associated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9130%7Chypothetical.for.122599-123971.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.122599-123971.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.122599-123971.Ar_EST_120301b_rep_c9130%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3158%7Catp-dependent.for.130435-132491.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.130435-132491.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.130435-132491.Ar_EST_120301b_c3158%7Catp-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16159%7Cpentapeptide.for.127438-128733.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.127438-128733.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.127438-128733.Ar_EST_120301b_c16159%7Cpentapeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17324%7Cdeah-box.for.129804-131312.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.129804-131312.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.129804-131312.Ar_EST_120301b_c17324%7Cdeah-box.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13668%7Cpentapeptide.for.126833-134289.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.126833-134289.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.126833-134289.Ar_EST_120301b_c13668%7Cpentapeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18239%7Cprotein.for.134008-135254.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.134008-135254.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.134008-135254.Ar_EST_120301b_c18239%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14682%7Cfy377012.for.134325-135441.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.134325-135441.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.134325-135441.Ar_EST_120301b_c14682%7Cfy377012.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1054%7Creverse.for.137097-139562.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.137097-139562.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.137097-139562.120301b_Contig1054%7Creverse.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig87%7Creverse.for.137443-141840.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.137443-141840.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.137443-141840.120301b_Contig87%7Creverse.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1127%7Csite-specific.for.138478-140457.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.138478-140457.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.138478-140457.Ar_EST_120301b_c1127%7Csite-specific.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11365%7C---NA---.for.140516-141818.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.140516-141818.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.140516-141818.Ar_EST_120301b_c11365%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1151%7Cprotein.for.139510-140849.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.139510-140849.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.139510-140849.Ar_EST_120301b_c1151%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15418%7C0173437.for.141397-142458.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.141397-142458.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.141397-142458.Ar_EST_120301b_c15418%7C0173437.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1468%7Cfy881664.for.141888-143137.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.141888-143137.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.141888-143137.Ar_EST_120301b_c1468%7Cfy881664.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17518%7C1098310.for.141666-143078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.141666-143078.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.141666-143078.Ar_EST_120301b_c17518%7C1098310.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:35 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:35 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 total clusters:35 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:34 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:29 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:40 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:54 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:41 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:53 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:55 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:34 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:30 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096617%7Cgb%7CEFC50245%2E1%7C.for.3766-5632.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.3766-5632.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.3766-5632.gi%7C284096617%7Cgb%7CEFC50245%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085117%7Cgb%7CEFC38803%2E1%7C.for.7281-8482.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7281-8482.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7281-8482.gi%7C284085117%7Cgb%7CEFC38803%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094028%7Cgb%7CEFC47663%2E1%7C.for.7281-8437.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7281-8437.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7281-8437.gi%7C284094028%7Cgb%7CEFC47663%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096335%7Cgb%7CEFC49963%2E1%7C.for.7281-8476.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7281-8476.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7281-8476.gi%7C284096335%7Cgb%7CEFC49963%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083146%7Cgb%7CEFC36852%2E1%7C.for.7272-8479.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7272-8479.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7272-8479.gi%7C284083146%7Cgb%7CEFC36852%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096073%7Cgb%7CEFC49702%2E1%7C.for.7272-8479.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7272-8479.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7272-8479.gi%7C284096073%7Cgb%7CEFC49702%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083449%7Cgb%7CEFC37152%2E1%7C.for.7275-8479.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7275-8479.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7275-8479.gi%7C284083449%7Cgb%7CEFC37152%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090015%7Cgb%7CEFC43669%2E1%7C.for.7518-8467.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7518-8467.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7518-8467.gi%7C284090015%7Cgb%7CEFC43669%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088656%7Cgb%7CEFC42318%2E1%7C.for.7272-8479.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7272-8479.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7272-8479.gi%7C284088656%7Cgb%7CEFC42318%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082495%7Cgb%7CEFC36212%2E1%7C.for.16753-17813.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.16753-17813.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.16753-17813.gi%7C284082495%7Cgb%7CEFC36212%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085727%7Cgb%7CEFC39409%2E1%7C.for.23366-25512.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.23366-25512.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.23366-25512.gi%7C284085727%7Cgb%7CEFC39409%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081155%7Cgb%7CEFC35313%2E1%7C.for.31897-33191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33191.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33191.gi%7C284081155%7Cgb%7CEFC35313%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092983%7Cgb%7CEFC46623%2E1%7C.for.31897-33191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33191.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33191.gi%7C284092983%7Cgb%7CEFC46623%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096875%7Cgb%7CEFC50502%2E1%7C.for.31933-33185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31933-33185.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31933-33185.gi%7C284096875%7Cgb%7CEFC50502%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090267%7Cgb%7CEFC43920%2E1%7C.for.31891-33125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31891-33125.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31891-33125.gi%7C284090267%7Cgb%7CEFC43920%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093592%7Cgb%7CEFC47229%2E1%7C.for.31933-33155.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31933-33155.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31933-33155.gi%7C284093592%7Cgb%7CEFC47229%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089692%7Cgb%7CEFC43348%2E1%7C.for.31933-33176.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31933-33176.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31933-33176.gi%7C284089692%7Cgb%7CEFC43348%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093109%7Cgb%7CEFC46748%2E1%7C.for.31933-33137.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31933-33137.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31933-33137.gi%7C284093109%7Cgb%7CEFC46748%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088464%7Cgb%7CEFC42127%2E1%7C.for.31885-33191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31885-33191.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31885-33191.gi%7C284088464%7Cgb%7CEFC42127%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085514%7Cgb%7CEFC39197%2E1%7C.for.31897-33185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33185.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33185.gi%7C284085514%7Cgb%7CEFC39197%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094883%7Cgb%7CEFC48516%2E1%7C.for.31897-33185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33185.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33185.gi%7C284094883%7Cgb%7CEFC48516%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095464%7Cgb%7CEFC49095%2E1%7C.for.31888-33191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31888-33191.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31888-33191.gi%7C284095464%7Cgb%7CEFC49095%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086458%7Cgb%7CEFC40134%2E1%7C.for.31879-33191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31879-33191.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31879-33191.gi%7C284086458%7Cgb%7CEFC40134%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090503%7Cgb%7CEFC44154%2E1%7C.for.31897-33191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33191.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33191.gi%7C284090503%7Cgb%7CEFC44154%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087655%7Cgb%7CEFC41323%2E1%7C.for.35179-36215.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35179-36215.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35179-36215.gi%7C284087655%7Cgb%7CEFC41323%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094750%7Cgb%7CEFC48383%2E1%7C.for.35182-36185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35182-36185.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35182-36185.gi%7C284094750%7Cgb%7CEFC48383%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093665%7Cgb%7CEFC47302%2E1%7C.for.35185-36215.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35185-36215.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35185-36215.gi%7C284093665%7Cgb%7CEFC47302%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083002%7Cgb%7CEFC36710%2E1%7C.for.35167-36194.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35167-36194.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35167-36194.gi%7C284083002%7Cgb%7CEFC36710%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096189%7Cgb%7CEFC49818%2E1%7C.for.35200-36185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35200-36185.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35200-36185.gi%7C284096189%7Cgb%7CEFC49818%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097268%7Cgb%7CEFC50895%2E1%7C.for.35194-36119.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35194-36119.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35194-36119.gi%7C284097268%7Cgb%7CEFC50895%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087657%7Cgb%7CEFC41325%2E1%7C.for.35194-36185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35194-36185.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35194-36185.gi%7C284087657%7Cgb%7CEFC41325%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.53623-54797.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.53623-54797.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.53623-54797.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080808%7Cgb%7CEFC35194%2E1%7C.for.53641-54773.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.53641-54773.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.53641-54773.gi%7C284080808%7Cgb%7CEFC35194%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088718%7Cgb%7CEFC42380%2E1%7C.for.97321-99173.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.97321-99173.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.97321-99173.gi%7C284088718%7Cgb%7CEFC42380%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088128%7Cgb%7CEFC41793%2E1%7C.for.102638-105144.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.102638-105144.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.102638-105144.gi%7C284088128%7Cgb%7CEFC41793%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087793%7Cgb%7CEFC41460%2E1%7C.for.122538-123964.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.122538-123964.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.122538-123964.gi%7C284087793%7Cgb%7CEFC41460%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091622%7Cgb%7CEFC45268%2E1%7C.for.127758-128797.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.127758-128797.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.127758-128797.gi%7C284091622%7Cgb%7CEFC45268%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092450%7Cgb%7CEFC46092%2E1%7C.for.129955-132404.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.129955-132404.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.129955-132404.gi%7C284092450%7Cgb%7CEFC46092%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092967%7Cgb%7CEFC46607%2E1%7C.for.130477-132494.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.130477-132494.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.130477-132494.gi%7C284092967%7Cgb%7CEFC46607%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095326%7Cgb%7CEFC48957%2E1%7C.for.130348-132413.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.130348-132413.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.130348-132413.gi%7C284095326%7Cgb%7CEFC48957%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:10 now processing 0 total clusters:10 now processing 0 ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:10 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:10 now processing 0 total clusters:10 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:10 now processing 0 total clusters:10 now processing 0 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 12 ...processing 1 of 12 ...processing 2 of 12 ...processing 3 of 12 ...processing 4 of 12 ...processing 5 of 12 ...processing 6 of 12 ...processing 7 of 12 ...processing 8 of 12 ...processing 9 of 12 ...processing 10 of 12 ...processing 11 of 12 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:9 now processing 0 total clusters:9 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:20 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:20 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:20 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:20 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:20 now processing 0 total clusters:20 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.2527-3444.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.2527-3444.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.2527-3444.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.20587-21452.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.20587-21452.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.20587-21452.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.23565-25687.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.23565-25687.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.23565-25687.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.32078-32991.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.32078-32991.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.32078-32991.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.35393-36315.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.35393-36315.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.35393-36315.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.44759-45610.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.44759-45610.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.44759-45610.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.49353-50561.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.49353-50561.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.49353-50561.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.76510-79797.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.76510-79797.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.76510-79797.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.84168-85294.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.84168-85294.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.84168-85294.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.95633-96616.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.95633-96616.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.95633-96616.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.101574-103179.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.101574-103179.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.101574-103179.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.115045-116020.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.115045-116020.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.115045-116020.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.122667-123801.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.122667-123801.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.122667-123801.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.129957-132294.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.129957-132294.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.129957-132294.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.137252-141129.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.137252-141129.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.137252-141129.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.141596-142878.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.141596-142878.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.141596-142878.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.3655-5732.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.3655-5732.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.3655-5732.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.7392-8353.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.7392-8353.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.7392-8353.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.8468-9593.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.8468-9593.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.8468-9593.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.15900-16956.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.15900-16956.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.15900-16956.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.30678-31613.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.30678-31613.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.30678-31613.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.44776-46068.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.44776-46068.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.44776-46068.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.46936-47876.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.46936-47876.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.46936-47876.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.61201-62045.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.61201-62045.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.61201-62045.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.68048-70359.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.68048-70359.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.68048-70359.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.71228-72366.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.71228-72366.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.71228-72366.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.97520-98973.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.97520-98973.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.97520-98973.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.102837-104944.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.102837-104944.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.102837-104944.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.105082-106541.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.105082-106541.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.105082-106541.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.127632-128597.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.127632-128597.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.127632-128597.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.134207-135054.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.134207-135054.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.134207-135054.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.140715-141618.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.140715-141618.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.140715-141618.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C10 Length: 41445 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C10.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C10.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7990%7C%3Ap.for.1-1325.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.1-1325.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.1-1325.Ar_EST_120301b_c7990%7C%3Ap.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20004%7Crr3c854jq.for.1-895.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.1-895.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.1-895.Ar_EST_120301b_c20004%7Crr3c854jq.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15326%7Cccts.for.3101-4431.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.3101-4431.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.3101-4431.Ar_EST_120301b_c15326%7Cccts.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10775%7Csjs.for.4244-5630.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.4244-5630.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.4244-5630.Ar_EST_120301b_c10775%7Csjs.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18609%7Ctim-barrel.for.4880-6450.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.4880-6450.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.4880-6450.Ar_EST_120301b_c18609%7Ctim-barrel.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14489%7Cround.for.8011-9359.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.8011-9359.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.8011-9359.Ar_EST_120301b_c14489%7Cround.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5030%7Cthaumatin-like.for.13925-15433.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.13925-15433.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.13925-15433.Ar_EST_120301b_rep_c5030%7Cthaumatin-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11177%7C---NA---.for.14867-16020.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.14867-16020.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.14867-16020.Ar_EST_120301b_c11177%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3649%7Cthaumatin-like.for.14119-16160.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.14119-16160.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.14119-16160.Ar_EST_120301b_c3649%7Cthaumatin-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5431%7Cthaumatin-like.for.13925-15654.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.13925-15654.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.13925-15654.Ar_EST_120301b_rep_c5431%7Cthaumatin-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17044%7Cdiphthamide.for.16149-17668.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.16149-17668.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.16149-17668.Ar_EST_120301b_c17044%7Cdiphthamide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c438%7Cpredicted.for.18557-20020.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.18557-20020.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.18557-20020.Ar_EST_120301b_c438%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig292%7Cpredicted.for.20140-22013.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.20140-22013.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.20140-22013.120301b_Contig292%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15990%7Cpredicted.for.20407-21603.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.20407-21603.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.20407-21603.Ar_EST_120301b_c15990%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig108%7Cprotein.for.23629-25513.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.23629-25513.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.23629-25513.120301b_Contig108%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1336%7Cprotein.for.23583-25036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.23583-25036.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.23583-25036.Ar_EST_120301b_c1336%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12861%7Couter.for.26766-28223.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.26766-28223.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.26766-28223.Ar_EST_120301b_c12861%7Couter.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8318%7Corigin.for.33442-35248.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.33442-35248.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.33442-35248.Ar_EST_120301b_c8318%7Corigin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15788%7Cprotein.for.35397-36741.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.35397-36741.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.35397-36741.Ar_EST_120301b_c15788%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15057%7Chypothetical.for.37196-38399.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.37196-38399.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.37196-38399.Ar_EST_120301b_c15057%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13382%7Cankyrin.for.38547-39913.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.38547-39913.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.38547-39913.Ar_EST_120301b_c13382%7Cankyrin.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:4 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:5 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090147%7Cgb%7CEFC43800%2E1%7C.for.11234-13175.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.11234-13175.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.11234-13175.gi%7C284090147%7Cgb%7CEFC43800%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090178%7Cgb%7CEFC43831%2E1%7C.for.18566-20543.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.18566-20543.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.18566-20543.gi%7C284090178%7Cgb%7CEFC43831%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084450%7Cgb%7CEFC38143%2E1%7C.for.23716-25578.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.23716-25578.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.23716-25578.gi%7C284084450%7Cgb%7CEFC38143%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087263%7Cgb%7CEFC40934%2E1%7C.for.23716-25578.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.23716-25578.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.23716-25578.gi%7C284087263%7Cgb%7CEFC40934%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093311%7Cgb%7CEFC46949%2E1%7C.for.31780-34157.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.31780-34157.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.31780-34157.gi%7C284093311%7Cgb%7CEFC46949%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095584%7Cgb%7CEFC49214%2E1%7C.for.31780-34052.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.31780-34052.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.31780-34052.gi%7C284095584%7Cgb%7CEFC49214%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086204%7Cgb%7CEFC39882%2E1%7C.for.35715-36694.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.35715-36694.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.35715-36694.gi%7C284086204%7Cgb%7CEFC39882%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088638%7Cgb%7CEFC42300%2E1%7C.for.35605-36721.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.35605-36721.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.35605-36721.gi%7C284088638%7Cgb%7CEFC42300%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:2 now processing 0 total clusters:2 now processing 0 ...processing 0 of 2 ...processing 1 of 2 cleaning clusters.... total clusters:2 now processing 0 total clusters:2 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:5 now processing 0 total clusters:5 now processing 0 total clusters:5 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:5 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:5 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.0-1125.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.0-1125.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.0-1125.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.3300-4231.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.3300-4231.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.3300-4231.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.4443-5430.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.4443-5430.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.4443-5430.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.14124-15960.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.14124-15960.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.14124-15960.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.16348-17526.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.16348-17526.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.16348-17526.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.18756-21813.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.18756-21813.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.18756-21813.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.23782-25313.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.23782-25313.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.23782-25313.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.26965-28023.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.26965-28023.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.26965-28023.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.33641-35048.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.33641-35048.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.33641-35048.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.35596-36541.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.35596-36541.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.35596-36541.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.5079-6250.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.5079-6250.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.5079-6250.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.8210-9159.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.8210-9159.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.8210-9159.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.15066-15820.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.15066-15820.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.15066-15820.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.31979-33957.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.31979-33957.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.31979-33957.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C11 Length: 25661 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C11.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C11.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12658%7Csurface.for.11183-12467.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.11183-12467.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.11183-12467.Ar_EST_120301b_c12658%7Csurface.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17333%7C---NA---.for.12804-13730.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.12804-13730.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.12804-13730.Ar_EST_120301b_c17333%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1625%7Cpredicted.for.13250-14650.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.13250-14650.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.13250-14650.Ar_EST_120301b_c1625%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10919%7Chistone.for.13946-15700.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.13946-15700.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.13946-15700.Ar_EST_120301b_c10919%7Chistone.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9390%7Cniemann-pick.for.23587-25127.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.23587-25127.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.23587-25127.Ar_EST_120301b_c9390%7Cniemann-pick.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c579%7Cpatched.for.24367-25661.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.24367-25661.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.24367-25661.Ar_EST_120301b_c579%7Cpatched.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2814%7Cniemann-pick.for.23796-25595.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.23796-25595.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.23796-25595.Ar_EST_120301b_c2814%7Cniemann-pick.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:4 now processing 0 total clusters:4 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:4 now processing 0 total clusters:4 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:14 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:14 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:22 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:37 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:19 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:19 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:19 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:25 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:18 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:10 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.335-2502.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.335-2502.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.335-2502.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.for.539-2493.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.539-2493.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.539-2493.gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.for.512-2502.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.512-2502.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.512-2502.gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085983%7Cgb%7CEFC39663%2E1%7C.for.551-2454.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2454.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2454.gi%7C284085983%7Cgb%7CEFC39663%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.for.521-2502.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.521-2502.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.521-2502.gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085992%7Cgb%7CEFC39672%2E1%7C.for.161-2502.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.161-2502.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.161-2502.gi%7C284085992%7Cgb%7CEFC39672%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.for.557-2670.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.557-2670.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.557-2670.gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.for.671-2022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.671-2022.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.671-2022.gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088147%7Cgb%7CEFC41812%2E1%7C.for.554-2562.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.554-2562.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.554-2562.gi%7C284088147%7Cgb%7CEFC41812%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.for.548-2502.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2502.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2502.gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.for.548-2511.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2511.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2511.gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.for.524-2553.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.524-2553.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.524-2553.gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.for.539-2508.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.539-2508.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.539-2508.gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082687%7Cgb%7CEFC36400%2E1%7C.for.551-2505.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2505.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2505.gi%7C284082687%7Cgb%7CEFC36400%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.for.512-2505.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.512-2505.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.512-2505.gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085285%7Cgb%7CEFC38970%2E1%7C.for.551-2406.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2406.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2406.gi%7C284085285%7Cgb%7CEFC38970%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.for.548-2511.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2511.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2511.gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.for.551-2493.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2493.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2493.gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088717%7Cgb%7CEFC42379%2E1%7C.for.551-2475.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2475.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2475.gi%7C284088717%7Cgb%7CEFC42379%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097002%7Cgb%7CEFC50629%2E1%7C.for.548-2499.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2499.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2499.gi%7C284097002%7Cgb%7CEFC50629%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081579%7Cgb%7CEFC35529%2E1%7C.for.551-2472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2472.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2472.gi%7C284081579%7Cgb%7CEFC35529%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.for.545-2508.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.545-2508.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.545-2508.gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.for.548-2472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2472.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2472.gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.for.506-2481.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.506-2481.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.506-2481.gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.for.551-2484.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2484.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2484.gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.for.494-2511.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.494-2511.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.494-2511.gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.for.452-2454.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.452-2454.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.452-2454.gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.for.548-2493.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2493.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2493.gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.for.668-2457.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.668-2457.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.668-2457.gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.for.479-2472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.479-2472.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.479-2472.gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092203%7Cgb%7CEFC45846%2E1%7C.for.536-2511.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.536-2511.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.536-2511.gi%7C284092203%7Cgb%7CEFC45846%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.for.488-2541.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.488-2541.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.488-2541.gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095044%7Cgb%7CEFC48676%2E1%7C.for.542-2475.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.542-2475.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.542-2475.gi%7C284095044%7Cgb%7CEFC48676%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083967%7Cgb%7CEFC37665%2E1%7C.for.530-2553.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.530-2553.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.530-2553.gi%7C284083967%7Cgb%7CEFC37665%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087857%7Cgb%7CEFC41524%2E1%7C.for.548-2511.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2511.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2511.gi%7C284087857%7Cgb%7CEFC41524%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.for.584-2448.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.584-2448.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.584-2448.gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084868%7Cgb%7CEFC38556%2E1%7C.for.17759-19557.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.17759-19557.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.17759-19557.gi%7C284084868%7Cgb%7CEFC38556%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096986%7Cgb%7CEFC50613%2E1%7C.for.19699-21620.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.19699-21620.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.19699-21620.gi%7C284096986%7Cgb%7CEFC50613%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085045%7Cgb%7CEFC38732%2E1%7C.for.23527-25661.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.23527-25661.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.23527-25661.gi%7C284085045%7Cgb%7CEFC38732%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:3 now processing 0 total clusters:3 now processing 0 total clusters:3 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:3 now processing 0 total clusters:3 now processing 0 total clusters:3 now processing 0 ...processing 0 of 32 ...processing 1 of 32 ...processing 2 of 32 ...processing 3 of 32 ...processing 4 of 32 ...processing 5 of 32 ...processing 6 of 32 ...processing 7 of 32 ...processing 8 of 32 ...processing 9 of 32 ...processing 10 of 32 ...processing 11 of 32 ...processing 12 of 32 ...processing 13 of 32 ...processing 14 of 32 ...processing 15 of 32 ...processing 16 of 32 ...processing 17 of 32 ...processing 18 of 32 ...processing 19 of 32 ...processing 20 of 32 ...trimming the rest flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:3 now processing 0 total clusters:3 now processing 0 total clusters:3 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:3 now processing 0 ...processing 0 of 20 ...processing 1 of 20 ...processing 2 of 20 ...processing 3 of 20 ...processing 4 of 20 ...processing 5 of 20 ...processing 6 of 20 ...processing 7 of 20 ...processing 8 of 20 ...processing 9 of 20 ...processing 10 of 20 ...processing 11 of 20 ...processing 12 of 20 ...processing 13 of 20 ...processing 14 of 20 ...processing 15 of 20 ...processing 16 of 20 ...processing 17 of 20 ...processing 18 of 20 ...processing 19 of 20 ...trimming the rest ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:3 now processing 0 total clusters:3 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.11382-12267.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.11382-12267.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.11382-12267.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.19898-21420.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.19898-21420.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.19898-21420.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.23726-25661.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.23726-25661.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.23726-25661.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.651-2335.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.651-2335.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.651-2335.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.13449-15575.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.13449-15575.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.13449-15575.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C12 Length: 151965 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:4 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:1 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:5 current j:0 j_size:5 current j:1 j_size:5 current j:2 j_size:5 current j:3 j_size:5 current j:4 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C12.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C12.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:10 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:4 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c728%7C600592206f1.for.1-1027.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.1-1027.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.1-1027.Ar_EST_120301b_c728%7C600592206f1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20258%7Cfq662406.for.1273-3642.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.1273-3642.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.1273-3642.Ar_EST_120301b_c20258%7Cfq662406.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11238%7Cwith.for.3899-5314.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.3899-5314.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.3899-5314.Ar_EST_120301b_c11238%7Cwith.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig287%7Cwith.for.4446-6729.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.4446-6729.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.4446-6729.120301b_Contig287%7Cwith.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4923%7Cconserved.for.5017-6047.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.5017-6047.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.5017-6047.Ar_EST_120301b_rep_c4923%7Cconserved.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c378%7Ccbnf.for.6989-8771.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.6989-8771.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.6989-8771.Ar_EST_120301b_c378%7Ccbnf.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3189%7Cdiaphanous-related.for.7781-9843.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.7781-9843.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.7781-9843.Ar_EST_120301b_c3189%7Cdiaphanous-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1550%7Cdiaphanous-related.for.9665-11058.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.9665-11058.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.9665-11058.Ar_EST_120301b_c1550%7Cdiaphanous-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11195%7Cmagnesium.for.24231-25451.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.24231-25451.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.24231-25451.Ar_EST_120301b_c11195%7Cmagnesium.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18198%7Creplication.for.26279-27668.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.26279-27668.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.26279-27668.Ar_EST_120301b_c18198%7Creplication.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18234%7Cham.for.26021-27411.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.26021-27411.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.26021-27411.Ar_EST_120301b_c18234%7Cham.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13712%7Creplication.for.27060-28313.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.27060-28313.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.27060-28313.Ar_EST_120301b_c13712%7Creplication.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9222%7Creplication.for.28102-29380.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.28102-29380.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.28102-29380.Ar_EST_120301b_c9222%7Creplication.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c527%7CPREDICTED%3A.for.28874-30302.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.28874-30302.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.28874-30302.Ar_EST_120301b_c527%7CPREDICTED%3A.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1382%7Cprotein.for.30821-32102.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.30821-32102.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.30821-32102.Ar_EST_120301b_c1382%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c651%7C40s.for.32109-34724.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.32109-34724.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.32109-34724.Ar_EST_120301b_c651%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15484%7C---NA---.for.32165-33345.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.32165-33345.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.32165-33345.Ar_EST_120301b_c15484%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4119%7Cmhck.for.36707-38256.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.36707-38256.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.36707-38256.Ar_EST_120301b_rep_c4119%7Cmhck.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10138%7Cmhck.for.37169-38246.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.37169-38246.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.37169-38246.Ar_EST_120301b_rep_c10138%7Cmhck.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15620%7Cmhck.for.37202-38226.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.37202-38226.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.37202-38226.Ar_EST_120301b_rep_c15620%7Cmhck.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5645%7Cmhck.for.36710-38207.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.36710-38207.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.36710-38207.Ar_EST_120301b_rep_c5645%7Cmhck.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1100%7Chypothetical.for.38822-40252.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.38822-40252.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.38822-40252.Ar_EST_120301b_c1100%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1316%7Cpeptide.for.40496-42494.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.40496-42494.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.40496-42494.Ar_EST_120301b_c1316%7Cpeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8577%7Cpeptide.for.41083-42501.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.41083-42501.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.41083-42501.Ar_EST_120301b_c8577%7Cpeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11844%7Csymbiotic.for.45845-47323.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.45845-47323.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.45845-47323.Ar_EST_120301b_c11844%7Csymbiotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18328%7Chypothetical.for.47200-48548.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.47200-48548.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.47200-48548.Ar_EST_120301b_c18328%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15267%7C---NA---.for.48658-49505.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.48658-49505.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.48658-49505.Ar_EST_120301b_c15267%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9869%7Ccell.for.51245-52959.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.51245-52959.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.51245-52959.Ar_EST_120301b_c9869%7Ccell.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17405%7Ccell.for.52390-53708.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.52390-53708.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.52390-53708.Ar_EST_120301b_c17405%7Ccell.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2712%7Cprotein.for.53486-55207.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.53486-55207.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.53486-55207.Ar_EST_120301b_c2712%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2244%7Cphosphomannomutase.for.54527-56081.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.54527-56081.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.54527-56081.Ar_EST_120301b_c2244%7Cphosphomannomutase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12102%7C---NA---.for.55329-56645.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.55329-56645.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.55329-56645.Ar_EST_120301b_c12102%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig305%7C78.for.59657-62478.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59657-62478.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59657-62478.120301b_Contig305%7C78.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20111%7Cgtp-binding.for.60232-61394.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.60232-61394.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.60232-61394.Ar_EST_120301b_rep_c20111%7Cgtp-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12799%7Cheat.for.59885-61210.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59885-61210.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59885-61210.Ar_EST_120301b_rep_c12799%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5590%7Cglucose.for.59659-61634.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59659-61634.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59659-61634.Ar_EST_120301b_rep_c5590%7Cglucose.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5697%7Cluminal.for.60638-62264.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.60638-62264.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.60638-62264.Ar_EST_120301b_rep_c5697%7Cluminal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c730%7Cpeptidyl-prolyl.for.62422-63765.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62422-63765.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62422-63765.Ar_EST_120301b_c730%7Cpeptidyl-prolyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16254%7Cbx752014.for.68805-70068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.68805-70068.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.68805-70068.Ar_EST_120301b_c16254%7Cbx752014.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2267%7C3-hydroxyacyl-.for.74154-75649.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.74154-75649.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.74154-75649.Ar_EST_120301b_c2267%7C3-hydroxyacyl-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10600%7Cshort-chain.for.74398-75478.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.74398-75478.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.74398-75478.Ar_EST_120301b_c10600%7Cshort-chain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11679%7C---NA---.for.76004-77182.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.76004-77182.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.76004-77182.Ar_EST_120301b_c11679%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4144%7Czinc.for.77468-79097.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.77468-79097.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.77468-79097.Ar_EST_120301b_rep_c4144%7Czinc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5140%7Cnotch.for.77764-79199.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.77764-79199.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.77764-79199.Ar_EST_120301b_rep_c5140%7Cnotch.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11995%7Csensitivity.for.78617-80004.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.78617-80004.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.78617-80004.Ar_EST_120301b_c11995%7Csensitivity.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18400%7Cprotein.for.83478-84841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.83478-84841.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.83478-84841.Ar_EST_120301b_c18400%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14469%7Cprotein.for.84247-85627.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.84247-85627.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.84247-85627.Ar_EST_120301b_c14469%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3303%7Cmolybdenum.for.91771-93085.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.91771-93085.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.91771-93085.Ar_EST_120301b_c3303%7Cmolybdenum.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig225%7Cmolybdenum.for.90117-92666.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.90117-92666.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.90117-92666.120301b_Contig225%7Cmolybdenum.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10477%7Cpa-phosphatase.for.93514-95251.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.93514-95251.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.93514-95251.Ar_EST_120301b_c10477%7Cpa-phosphatase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9955%7Cmeloidogyne.for.93697-94715.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.93697-94715.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.93697-94715.Ar_EST_120301b_c9955%7Cmeloidogyne.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11581%7Cprotein.for.94100-95577.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.94100-95577.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.94100-95577.Ar_EST_120301b_c11581%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19576%7Cfusca.for.94823-96350.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.94823-96350.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.94823-96350.Ar_EST_120301b_rep_c19576%7Cfusca.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig170%7Cprotein.for.94827-96951.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.94827-96951.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.94827-96951.120301b_Contig170%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7131%7Cferrichrome.for.96302-97853.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96302-97853.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96302-97853.Ar_EST_120301b_rep_c7131%7Cferrichrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13182%7C---NA---.for.96455-97783.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96455-97783.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96455-97783.Ar_EST_120301b_rep_c13182%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c6331%7Ccu619418.for.96329-97526.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96329-97526.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96329-97526.Ar_EST_120301b_c6331%7Ccu619418.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig502%7Cferrichrome.for.96303-97897.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96303-97897.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96303-97897.120301b_Contig502%7Cferrichrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9400%7Cmus06-.for.96344-97727.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96344-97727.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96344-97727.Ar_EST_120301b_rep_c9400%7Cmus06-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12703%7Cdisulfide.for.96546-97781.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96546-97781.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96546-97781.Ar_EST_120301b_rep_c12703%7Cdisulfide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5321%7C-.for.96317-97706.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96317-97706.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96317-97706.Ar_EST_120301b_rep_c5321%7C-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11637%7Ccczb.for.96273-97722.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96273-97722.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96273-97722.Ar_EST_120301b_rep_c11637%7Ccczb.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15753%7Coligopeptide.for.96409-97810.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96409-97810.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96409-97810.Ar_EST_120301b_rep_c15753%7Coligopeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5757%7Cdisulfide.for.96700-97781.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96700-97781.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96700-97781.Ar_EST_120301b_rep_c5757%7Cdisulfide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13003%7Ce3.for.96709-97781.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96709-97781.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96709-97781.Ar_EST_120301b_rep_c13003%7Ce3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6679%7C9787.for.96302-97783.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96302-97783.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96302-97783.Ar_EST_120301b_rep_c6679%7C9787.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12673%7Cubiquitin-protein.for.96641-97769.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96641-97769.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96641-97769.Ar_EST_120301b_rep_c12673%7Cubiquitin-protein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4609%7Cprotein.for.96302-97810.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96302-97810.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96302-97810.Ar_EST_120301b_rep_c4609%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15179%7C---NA---.for.96524-97715.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96524-97715.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96524-97715.Ar_EST_120301b_rep_c15179%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14025%7C---NA---.for.98770-99965.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.98770-99965.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.98770-99965.Ar_EST_120301b_c14025%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig23%7Cprotein.for.100923-102492.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.100923-102492.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.100923-102492.120301b_Contig23%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15597%7Cgpgc_est01533.for.102951-104268.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.102951-104268.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.102951-104268.Ar_EST_120301b_c15597%7Cgpgc_est01533.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14029%7Ccbwo.for.103484-104861.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.103484-104861.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.103484-104861.Ar_EST_120301b_c14029%7Ccbwo.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1391%7Cmonothiol.for.105135-106412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105135-106412.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105135-106412.Ar_EST_120301b_c1391%7Cmonothiol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11256%7Cbipolar.for.107074-109113.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.107074-109113.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.107074-109113.Ar_EST_120301b_c11256%7Cbipolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10687%7C---NA---.for.108374-109747.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.108374-109747.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.108374-109747.Ar_EST_120301b_c10687%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11166%7Cphosphatidylethanolamine.for.110002-111393.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.110002-111393.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.110002-111393.Ar_EST_120301b_c11166%7Cphosphatidylethanolamine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15500%7Cphosphatidylethanolaminen-methyltransferase-lik.for.110586-111697.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.110586-111697.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.110586-111697.Ar_EST_120301b_c15500%7Cphosphatidylethanolaminen-methyltransferase-lik.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig910%7Cphosphatidylethanolaminen-methyltransferase-lik.for.111061-112546.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.111061-112546.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.111061-112546.120301b_Contig910%7Cphosphatidylethanolaminen-methyltransferase-lik.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig127%7Csh3.for.113661-115293.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.113661-115293.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.113661-115293.120301b_Contig127%7Csh3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig422%7Csh3.for.114866-116880.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.114866-116880.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.114866-116880.120301b_Contig422%7Csh3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7745%7Cdedicator.for.116151-118278.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.116151-118278.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.116151-118278.Ar_EST_120301b_c7745%7Cdedicator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8510%7Ctranscription.for.118339-119509.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.118339-119509.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.118339-119509.Ar_EST_120301b_rep_c8510%7Ctranscription.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1228%7Cdedicator.for.117330-119916.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.117330-119916.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.117330-119916.120301b_Contig1228%7Cdedicator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18015%7Cinosine-uridine.for.119625-120965.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.119625-120965.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.119625-120965.Ar_EST_120301b_c18015%7Cinosine-uridine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2577%7Cprotein.for.124415-126298.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.124415-126298.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.124415-126298.Ar_EST_120301b_c2577%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9484%7C1533272.for.125735-126997.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.125735-126997.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.125735-126997.Ar_EST_120301b_c9484%7C1533272.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8218%7Cprotein.for.126743-128790.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.126743-128790.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.126743-128790.Ar_EST_120301b_c8218%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13412%7C---NA---.for.128342-129516.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.128342-129516.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.128342-129516.Ar_EST_120301b_c13412%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19599%7Chec.for.129431-130776.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.129431-130776.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.129431-130776.Ar_EST_120301b_c19599%7Chec.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8962%7Cchromosome.for.129082-130441.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.129082-130441.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.129082-130441.Ar_EST_120301b_c8962%7Cchromosome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2192%7Cphosphatidic.for.135132-136930.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.135132-136930.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.135132-136930.Ar_EST_120301b_c2192%7Cphosphatidic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15138%7Clib4217-068-r1-k1-b1.for.136433-137418.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.136433-137418.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.136433-137418.Ar_EST_120301b_c15138%7Clib4217-068-r1-k1-b1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15263%7C---NA---.for.136631-137561.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.136631-137561.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.136631-137561.Ar_EST_120301b_rep_c15263%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2905%7C---NA---.for.137181-139024.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.137181-139024.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.137181-139024.Ar_EST_120301b_c2905%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig48%7C---NA---.for.138537-140647.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.138537-140647.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.138537-140647.120301b_Contig48%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16578%7Csigmae.for.149378-151076.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.149378-151076.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.149378-151076.Ar_EST_120301b_c16578%7Csigmae.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17410%7Ctetratricopeptide.for.150544-151872.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.150544-151872.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.150544-151872.Ar_EST_120301b_c17410%7Ctetratricopeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18065%7Ctetratricopeptide.for.150570-151821.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.150570-151821.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.150570-151821.Ar_EST_120301b_c18065%7Ctetratricopeptide.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:46 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:43 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:50 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:46 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:26 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:40 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:48 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:36 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093495%7Cgb%7CEFC47133%2E1%7C.for.3581-5384.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.3581-5384.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.3581-5384.gi%7C284093495%7Cgb%7CEFC47133%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090291%7Cgb%7CEFC43943%2E1%7C.for.4015-5161.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.4015-5161.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.4015-5161.gi%7C284090291%7Cgb%7CEFC43943%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084873%7Cgb%7CEFC38561%2E1%7C.for.4027-5218.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.4027-5218.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.4027-5218.gi%7C284084873%7Cgb%7CEFC38561%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097132%7Cgb%7CEFC50759%2E1%7C.for.4027-5155.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.4027-5155.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.4027-5155.gi%7C284097132%7Cgb%7CEFC50759%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091842%7Cgb%7CEFC45487%2E1%7C.for.24248-26025.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.24248-26025.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.24248-26025.gi%7C284091842%7Cgb%7CEFC45487%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092123%7Cgb%7CEFC45766%2E1%7C.for.26817-29382.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.26817-29382.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.26817-29382.gi%7C284092123%7Cgb%7CEFC45766%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083554%7Cgb%7CEFC37256%2E1%7C.for.29087-30486.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.29087-30486.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.29087-30486.gi%7C284083554%7Cgb%7CEFC37256%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084643%7Cgb%7CEFC38333%2E1%7C.for.49616-50949.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.49616-50949.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.49616-50949.gi%7C284084643%7Cgb%7CEFC38333%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C1705642%7Csp%7CP53441%2E1%7CCATR_NAEGR.for.49616-50949.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.49616-50949.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.49616-50949.gi%7C1705642%7Csp%7CP53441%2E1%7CCATR_NAEGR.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C972963%7Cgb%7CAAA75032%2E1%7C.for.49616-50949.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.49616-50949.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.49616-50949.gi%7C972963%7Cgb%7CAAA75032%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091881%7Cgb%7CEFC45525%2E1%7C.for.49598-50883.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.49598-50883.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.49598-50883.gi%7C284091881%7Cgb%7CEFC45525%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086029%7Cgb%7CEFC39708%2E1%7C.for.53762-55182.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.53762-55182.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.53762-55182.gi%7C284086029%7Cgb%7CEFC39708%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094206%7Cgb%7CEFC47841%2E1%7C.for.54553-56087.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.54553-56087.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.54553-56087.gi%7C284094206%7Cgb%7CEFC47841%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092821%7Cgb%7CEFC46461%2E1%7C.for.55858-60224.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.55858-60224.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.55858-60224.gi%7C284092821%7Cgb%7CEFC46461%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083022%7Cgb%7CEFC36730%2E1%7C.for.56017-60167.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.56017-60167.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.56017-60167.gi%7C284083022%7Cgb%7CEFC36730%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093552%7Cgb%7CEFC47189%2E1%7C.for.55819-60119.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.55819-60119.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.55819-60119.gi%7C284093552%7Cgb%7CEFC47189%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085695%7Cgb%7CEFC39377%2E1%7C.for.55768-60191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.55768-60191.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.55768-60191.gi%7C284085695%7Cgb%7CEFC39377%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082133%7Cgb%7CEFC35904%2E1%7C.for.56092-57512.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.56092-57512.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.56092-57512.gi%7C284082133%7Cgb%7CEFC35904%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091446%7Cgb%7CEFC45093%2E1%7C.for.59738-62358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59738-62358.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59738-62358.gi%7C284091446%7Cgb%7CEFC45093%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094819%7Cgb%7CEFC48452%2E1%7C.for.59918-62361.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59918-62361.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59918-62361.gi%7C284094819%7Cgb%7CEFC48452%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084267%7Cgb%7CEFC37961%2E1%7C.for.59996-62367.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59996-62367.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59996-62367.gi%7C284084267%7Cgb%7CEFC37961%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092327%7Cgb%7CEFC45969%2E1%7C.for.59813-62445.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59813-62445.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59813-62445.gi%7C284092327%7Cgb%7CEFC45969%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084526%7Cgb%7CEFC38218%2E1%7C.for.59685-62454.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59685-62454.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59685-62454.gi%7C284084526%7Cgb%7CEFC38218%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082776%7Cgb%7CEFC36488%2E1%7C.for.59762-62358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59762-62358.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59762-62358.gi%7C284082776%7Cgb%7CEFC36488%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085272%7Cgb%7CEFC38957%2E1%7C.for.59762-62358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59762-62358.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59762-62358.gi%7C284085272%7Cgb%7CEFC38957%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085885%7Cgb%7CEFC39565%2E1%7C.for.59762-62358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59762-62358.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59762-62358.gi%7C284085885%7Cgb%7CEFC39565%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085240%7Cgb%7CEFC38925%2E1%7C.for.59762-62358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59762-62358.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59762-62358.gi%7C284085240%7Cgb%7CEFC38925%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C33694258%7Cgb%7CAAQ24867%2E1%7C.for.59726-62358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59726-62358.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59726-62358.gi%7C33694258%7Cgb%7CAAQ24867%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089387%7Cgb%7CEFC43045%2E1%7C.for.59726-62358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59726-62358.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59726-62358.gi%7C284089387%7Cgb%7CEFC43045%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081155%7Cgb%7CEFC35313%2E1%7C.for.62542-63800.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62542-63800.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62542-63800.gi%7C284081155%7Cgb%7CEFC35313%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092983%7Cgb%7CEFC46623%2E1%7C.for.62542-63800.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62542-63800.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62542-63800.gi%7C284092983%7Cgb%7CEFC46623%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085514%7Cgb%7CEFC39197%2E1%7C.for.62548-63833.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62548-63833.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62548-63833.gi%7C284085514%7Cgb%7CEFC39197%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088464%7Cgb%7CEFC42127%2E1%7C.for.62728-63800.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62728-63800.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62728-63800.gi%7C284088464%7Cgb%7CEFC42127%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094883%7Cgb%7CEFC48516%2E1%7C.for.62734-63803.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62734-63803.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62734-63803.gi%7C284094883%7Cgb%7CEFC48516%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086458%7Cgb%7CEFC40134%2E1%7C.for.62734-63800.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62734-63800.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62734-63800.gi%7C284086458%7Cgb%7CEFC40134%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089438%7Cgb%7CEFC43095%2E1%7C.for.74105-75710.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.74105-75710.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.74105-75710.gi%7C284089438%7Cgb%7CEFC43095%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089747%7Cgb%7CEFC43403%2E1%7C.for.82024-83787.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82024-83787.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82024-83787.gi%7C284089747%7Cgb%7CEFC43403%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088991%7Cgb%7CEFC42651%2E1%7C.for.82054-84055.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82054-84055.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82054-84055.gi%7C284088991%7Cgb%7CEFC42651%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092256%7Cgb%7CEFC45899%2E1%7C.for.82090-83787.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82090-83787.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82090-83787.gi%7C284092256%7Cgb%7CEFC45899%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081561%7Cgb%7CEFC35518%2E1%7C.for.82084-83787.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82084-83787.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82084-83787.gi%7C284081561%7Cgb%7CEFC35518%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082242%7Cgb%7CEFC35988%2E1%7C.for.82117-83787.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82117-83787.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82117-83787.gi%7C284082242%7Cgb%7CEFC35988%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094373%7Cgb%7CEFC48007%2E1%7C.for.82021-83802.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82021-83802.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82021-83802.gi%7C284094373%7Cgb%7CEFC48007%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087115%7Cgb%7CEFC40787%2E1%7C.for.82018-83766.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82018-83766.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82018-83766.gi%7C284087115%7Cgb%7CEFC40787%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087025%7Cgb%7CEFC40697%2E1%7C.for.82018-83781.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82018-83781.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82018-83781.gi%7C284087025%7Cgb%7CEFC40697%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093068%7Cgb%7CEFC46707%2E1%7C.for.82087-84040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82087-84040.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82087-84040.gi%7C284093068%7Cgb%7CEFC46707%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091439%7Cgb%7CEFC45086%2E1%7C.for.82030-83805.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82030-83805.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82030-83805.gi%7C284091439%7Cgb%7CEFC45086%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088654%7Cgb%7CEFC42316%2E1%7C.for.82084-83787.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82084-83787.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82084-83787.gi%7C284088654%7Cgb%7CEFC42316%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090654%7Cgb%7CEFC44305%2E1%7C.for.80395-84052.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.80395-84052.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.80395-84052.gi%7C284090654%7Cgb%7CEFC44305%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096156%7Cgb%7CEFC49785%2E1%7C.for.82108-83763.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82108-83763.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82108-83763.gi%7C284096156%7Cgb%7CEFC49785%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093767%7Cgb%7CEFC47404%2E1%7C.for.82003-83778.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82003-83778.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82003-83778.gi%7C284093767%7Cgb%7CEFC47404%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086663%7Cgb%7CEFC40338%2E1%7C.for.85626-86563.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.85626-86563.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.85626-86563.gi%7C284086663%7Cgb%7CEFC40338%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084726%7Cgb%7CEFC38415%2E1%7C.for.90734-91704.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.90734-91704.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.90734-91704.gi%7C284084726%7Cgb%7CEFC38415%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088468%7Cgb%7CEFC42131%2E1%7C.for.92844-94195.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.92844-94195.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.92844-94195.gi%7C284088468%7Cgb%7CEFC42131%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086633%7Cgb%7CEFC40308%2E1%7C.for.94814-96942.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.94814-96942.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.94814-96942.gi%7C284086633%7Cgb%7CEFC40308%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096908%7Cgb%7CEFC50535%2E1%7C.for.105234-106381.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105234-106381.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105234-106381.gi%7C284096908%7Cgb%7CEFC50535%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089747%7Cgb%7CEFC43403%2E1%7C.for.105883-107777.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105883-107777.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105883-107777.gi%7C284089747%7Cgb%7CEFC43403%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082242%7Cgb%7CEFC35988%2E1%7C.for.106003-107663.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.106003-107663.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.106003-107663.gi%7C284082242%7Cgb%7CEFC35988%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094373%7Cgb%7CEFC48007%2E1%7C.for.105853-107771.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105853-107771.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105853-107771.gi%7C284094373%7Cgb%7CEFC48007%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093549%7Cgb%7CEFC47186%2E1%7C.for.105874-108389.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105874-108389.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105874-108389.gi%7C284093549%7Cgb%7CEFC47186%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091439%7Cgb%7CEFC45086%2E1%7C.for.105874-107756.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105874-107756.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105874-107756.gi%7C284091439%7Cgb%7CEFC45086%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085654%7Cgb%7CEFC39336%2E1%7C.for.105868-107768.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105868-107768.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105868-107768.gi%7C284085654%7Cgb%7CEFC39336%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088654%7Cgb%7CEFC42316%2E1%7C.for.105982-107687.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105982-107687.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105982-107687.gi%7C284088654%7Cgb%7CEFC42316%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084300%7Cgb%7CEFC37994%2E1%7C.for.109953-112547.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.109953-112547.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.109953-112547.gi%7C284084300%7Cgb%7CEFC37994%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093284%7Cgb%7CEFC46922%2E1%7C.for.113649-119929.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.113649-119929.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.113649-119929.gi%7C284093284%7Cgb%7CEFC46922%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092928%7Cgb%7CEFC46568%2E1%7C.for.147396-149152.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.147396-149152.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.147396-149152.gi%7C284092928%7Cgb%7CEFC46568%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:18 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:18 now processing 0 ...processing 0 of 11 ...processing 1 of 11 ...processing 2 of 11 ...processing 3 of 11 ...processing 4 of 11 ...processing 5 of 11 ...processing 6 of 11 ...processing 7 of 11 ...processing 8 of 11 ...processing 9 of 11 ...processing 10 of 11 total clusters:18 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:18 now processing 0 total clusters:18 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:16 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:16 now processing 0 ...processing 0 of 11 ...processing 1 of 11 ...processing 2 of 11 ...processing 3 of 11 ...processing 4 of 11 ...processing 5 of 11 ...processing 6 of 11 ...processing 7 of 11 ...processing 8 of 11 ...processing 9 of 11 ...processing 10 of 11 total clusters:16 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:16 now processing 0 total clusters:16 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:16 now processing 0 total clusters:16 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:25 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:25 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.1472-3444.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.1472-3444.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.1472-3444.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.3780-6529.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.3780-6529.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.3780-6529.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.7980-10858.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.7980-10858.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.7980-10858.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.24430-25871.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.24430-25871.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.24430-25871.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.26082-29425.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.26082-29425.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.26082-29425.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.40695-42306.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.40695-42306.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.40695-42306.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.46044-47123.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.46044-47123.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.46044-47123.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.53685-55887.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.53685-55887.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.53685-55887.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.76160-76982.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.76160-76982.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.76160-76982.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.77639-79020.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.77639-79020.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.77639-79020.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.83677-85427.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.83677-85427.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.83677-85427.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.90316-92885.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.90316-92885.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.90316-92885.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.93043-95377.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.93043-95377.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.93043-95377.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.103150-104661.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.103150-104661.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.103150-104661.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.105334-109562.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.105334-109562.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.105334-109562.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.113848-119729.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.113848-119729.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.113848-119729.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.119765-120770.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.119765-120770.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.119765-120770.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.124614-126828.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.124614-126828.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.124614-126828.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.126942-129316.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.126942-129316.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.126942-129316.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.135331-136730.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.135331-136730.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.135331-136730.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.147595-150876.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.147595-150876.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.147595-150876.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.0-827.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.0-827.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.0-827.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.29073-30289.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.29073-30289.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.29073-30289.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.31020-31920.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.31020-31920.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.31020-31920.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.32362-33211.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.32362-33211.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.32362-33211.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.36906-38056.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.36906-38056.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.36906-38056.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.47399-48348.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.47399-48348.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.47399-48348.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.49797-50749.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.49797-50749.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.49797-50749.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.51444-53529.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.51444-53529.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.51444-53529.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.55528-62278.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.55528-62278.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.55528-62278.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.62621-63668.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.62621-63668.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.62621-63668.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.69004-69868.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.69004-69868.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.69004-69868.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.74304-75510.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.74304-75510.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.74304-75510.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.78816-79874.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.78816-79874.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.78816-79874.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.80594-83855.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.80594-83855.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.80594-83855.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.95013-97791.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.95013-97791.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.95013-97791.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.101122-102292.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.101122-102292.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.101122-102292.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.110152-112347.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.110152-112347.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.110152-112347.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.129281-130576.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.129281-130576.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.129281-130576.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.136620-137227.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.136620-137227.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.136620-137227.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/40_0.137380-140447.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/40_0.137380-140447.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/40_0.137380-140447.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/41_0.150743-151676.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/41_0.150743-151676.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/41_0.150743-151676.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C13 Length: 94253 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:3 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:1 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C13.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C13.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3661%7Cddb1-.for.1745-3537.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.1745-3537.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.1745-3537.Ar_EST_120301b_c3661%7Cddb1-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig808%7Carv1-like.for.2831-4363.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.2831-4363.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.2831-4363.120301b_Contig808%7Carv1-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18040%7Chydra.for.8499-9557.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.8499-9557.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.8499-9557.Ar_EST_120301b_c18040%7Chydra.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9342%7Cheat.for.12830-13893.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.12830-13893.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.12830-13893.Ar_EST_120301b_c9342%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12165%7Capoptosis.for.13946-15307.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.13946-15307.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.13946-15307.Ar_EST_120301b_c12165%7Capoptosis.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1412%7Cprotein.for.15657-17513.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.15657-17513.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.15657-17513.Ar_EST_120301b_c1412%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17790%7Ceimeria.for.16740-18028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.16740-18028.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.16740-18028.Ar_EST_120301b_c17790%7Ceimeria.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15312%7Cpredicted.for.17459-19020.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.17459-19020.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.17459-19020.Ar_EST_120301b_c15312%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1936%7Cbeta-catenin-like.for.20721-22008.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.20721-22008.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.20721-22008.Ar_EST_120301b_c1936%7Cbeta-catenin-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16537%7C---NA---.for.21351-22641.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.21351-22641.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.21351-22641.Ar_EST_120301b_c16537%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15992%7C---NA---.for.22668-23828.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.22668-23828.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.22668-23828.Ar_EST_120301b_c15992%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14531%7Chfmidgut6l20.for.23049-24066.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.23049-24066.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.23049-24066.Ar_EST_120301b_c14531%7Chfmidgut6l20.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20424%7Cserine.for.24027-26914.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24027-26914.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24027-26914.Ar_EST_120301b_c20424%7Cserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15621%7C---NA---.for.26261-27545.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.26261-27545.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.26261-27545.Ar_EST_120301b_c15621%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1943%7Cunnamed.for.26952-28306.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.26952-28306.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.26952-28306.Ar_EST_120301b_c1943%7Cunnamed.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3269%7Cvacuolar.for.30273-32149.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.30273-32149.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.30273-32149.Ar_EST_120301b_c3269%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig152%7Cpredicted.for.31784-33714.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.31784-33714.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.31784-33714.120301b_Contig152%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2300%7Cpolysaccharide.for.32622-34650.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.32622-34650.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.32622-34650.Ar_EST_120301b_c2300%7Cpolysaccharide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig777%7Cpredicted.for.34309-36092.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.34309-36092.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.34309-36092.120301b_Contig777%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig734%7Cnucleolar.for.37670-39974.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.37670-39974.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.37670-39974.120301b_Contig734%7Cnucleolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14475%7Cnucleolar.for.38061-39162.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.38061-39162.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.38061-39162.Ar_EST_120301b_c14475%7Cnucleolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10418%7Cdna.for.40207-41624.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.40207-41624.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.40207-41624.Ar_EST_120301b_c10418%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3221%7Cdna.for.41131-43095.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.41131-43095.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.41131-43095.Ar_EST_120301b_c3221%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6645%7Csmall.for.42492-44013.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.42492-44013.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.42492-44013.Ar_EST_120301b_rep_c6645%7Csmall.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6374%7Csmall.for.42392-44097.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.42392-44097.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.42392-44097.Ar_EST_120301b_rep_c6374%7Csmall.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5931%7Cg.for.44474-45483.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.44474-45483.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.44474-45483.Ar_EST_120301b_rep_c5931%7Cg.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4250%7Cg.for.43755-45604.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43755-45604.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43755-45604.Ar_EST_120301b_rep_c4250%7Cg.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1287%7Cbeta.for.45114-47502.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.45114-47502.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.45114-47502.120301b_Contig1287%7Cbeta.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14505%7C---NA---.for.46909-47898.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.46909-47898.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.46909-47898.Ar_EST_120301b_c14505%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8556%7Cglucose.for.49309-50844.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.49309-50844.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.49309-50844.Ar_EST_120301b_c8556%7Cglucose.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18986%7Ctrna.for.49922-51161.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.49922-51161.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.49922-51161.Ar_EST_120301b_c18986%7Ctrna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15011%7Cc-myc-binding.for.50825-51971.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.50825-51971.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.50825-51971.Ar_EST_120301b_c15011%7Cc-myc-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16329%7Cp-type.for.54519-56067.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.54519-56067.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.54519-56067.Ar_EST_120301b_c16329%7Cp-type.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig987%7Cdomain.for.55418-56940.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.55418-56940.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.55418-56940.120301b_Contig987%7Cdomain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c399%7Cp-type.for.57171-58500.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.57171-58500.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.57171-58500.Ar_EST_120301b_c399%7Cp-type.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8892%7Ctransmembrane.for.57005-58272.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.57005-58272.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.57005-58272.Ar_EST_120301b_c8892%7Ctransmembrane.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14963%7Cras.for.57852-59231.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.57852-59231.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.57852-59231.Ar_EST_120301b_c14963%7Cras.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11353%7Cphosphatidylserine.for.62457-63750.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.62457-63750.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.62457-63750.Ar_EST_120301b_c11353%7Cphosphatidylserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9953%7Cphosphatidylserine.for.62954-64357.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.62954-64357.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.62954-64357.Ar_EST_120301b_c9953%7Cphosphatidylserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15385%7Cconserved.for.64079-65170.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.64079-65170.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.64079-65170.Ar_EST_120301b_c15385%7Cconserved.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8704%7Cpeptidyl-trna.for.65595-67100.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.65595-67100.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.65595-67100.Ar_EST_120301b_c8704%7Cpeptidyl-trna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19991%7Ccalcium-dependent.for.66461-67517.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.66461-67517.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.66461-67517.Ar_EST_120301b_rep_c19991%7Ccalcium-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2912%7Ctransmembrane.for.66454-67702.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.66454-67702.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.66454-67702.Ar_EST_120301b_c2912%7Ctransmembrane.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14174%7Cfq834760.for.67005-68053.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.67005-68053.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.67005-68053.Ar_EST_120301b_rep_c14174%7Cfq834760.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19420%7Cactin.for.72710-73909.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.72710-73909.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.72710-73909.Ar_EST_120301b_c19420%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12691%7Calpha.for.73546-74865.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.73546-74865.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.73546-74865.Ar_EST_120301b_c12691%7Calpha.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12365%7Cfp681517.for.74084-75586.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.74084-75586.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.74084-75586.Ar_EST_120301b_c12365%7Cfp681517.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2440%7Cphosphatase.for.78688-80647.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.78688-80647.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.78688-80647.Ar_EST_120301b_c2440%7Cphosphatase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9114%7Cvesicle.for.79865-81214.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.79865-81214.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.79865-81214.Ar_EST_120301b_c9114%7Cvesicle.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig581%7Crcc1.for.82337-85302.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.82337-85302.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.82337-85302.120301b_Contig581%7Crcc1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c339%7Cequilibrative.for.87822-89970.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.87822-89970.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.87822-89970.Ar_EST_120301b_c339%7Cequilibrative.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14139%7Cftfucp0006h12_f_phred13_vc.for.87888-88867.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.87888-88867.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.87888-88867.Ar_EST_120301b_rep_c14139%7Cftfucp0006h12_f_phred13_vc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c457%7Cprotein.for.89276-90684.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.89276-90684.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.89276-90684.Ar_EST_120301b_c457%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18026%7Ccalponin.for.90716-92075.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90716-92075.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90716-92075.Ar_EST_120301b_c18026%7Ccalponin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1402%7Ccalponin.for.90627-92043.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90627-92043.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90627-92043.Ar_EST_120301b_c1402%7Ccalponin.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:47 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:41 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:48 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:46 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:55 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:57 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:44 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:59 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:48 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:32 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081691%7Cgb%7CEFC35595%2E1%7C.for.1746-3262.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.1746-3262.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.1746-3262.gi%7C284081691%7Cgb%7CEFC35595%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081706%7Cgb%7CEFC35605%2E1%7C.for.1746-3073.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.1746-3073.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.1746-3073.gi%7C284081706%7Cgb%7CEFC35605%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081561%7Cgb%7CEFC35518%2E1%7C.for.6248-8048.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6248-8048.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6248-8048.gi%7C284081561%7Cgb%7CEFC35518%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082242%7Cgb%7CEFC35988%2E1%7C.for.6401-8048.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6401-8048.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6401-8048.gi%7C284082242%7Cgb%7CEFC35988%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085654%7Cgb%7CEFC39336%2E1%7C.for.6314-8048.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6314-8048.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6314-8048.gi%7C284085654%7Cgb%7CEFC39336%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091439%7Cgb%7CEFC45086%2E1%7C.for.6284-8048.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6284-8048.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6284-8048.gi%7C284091439%7Cgb%7CEFC45086%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088654%7Cgb%7CEFC42316%2E1%7C.for.6371-8036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6371-8036.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6371-8036.gi%7C284088654%7Cgb%7CEFC42316%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086972%7Cgb%7CEFC40645%2E1%7C.for.6302-7785.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6302-7785.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6302-7785.gi%7C284086972%7Cgb%7CEFC40645%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093767%7Cgb%7CEFC47404%2E1%7C.for.6392-7782.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6392-7782.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6392-7782.gi%7C284093767%7Cgb%7CEFC47404%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090520%7Cgb%7CEFC44171%2E1%7C.for.18491-20354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18491-20354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18491-20354.gi%7C284090520%7Cgb%7CEFC44171%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089855%7Cgb%7CEFC43510%2E1%7C.for.18503-19993.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18503-19993.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18503-19993.gi%7C284089855%7Cgb%7CEFC43510%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089795%7Cgb%7CEFC43450%2E1%7C.for.18542-20120.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18542-20120.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18542-20120.gi%7C284089795%7Cgb%7CEFC43450%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089773%7Cgb%7CEFC43428%2E1%7C.for.18494-20360.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18494-20360.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18494-20360.gi%7C284089773%7Cgb%7CEFC43428%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084776%7Cgb%7CEFC38465%2E1%7C.for.18488-19705.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18488-19705.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18488-19705.gi%7C284084776%7Cgb%7CEFC38465%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087916%7Cgb%7CEFC41583%2E1%7C.for.24189-25692.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25692.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25692.gi%7C284087916%7Cgb%7CEFC41583%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088036%7Cgb%7CEFC41702%2E1%7C.for.24189-25710.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25710.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25710.gi%7C284088036%7Cgb%7CEFC41702%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093143%7Cgb%7CEFC46782%2E1%7C.for.24192-25698.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24192-25698.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24192-25698.gi%7C284093143%7Cgb%7CEFC46782%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085578%7Cgb%7CEFC39261%2E1%7C.for.24338-25701.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24338-25701.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24338-25701.gi%7C284085578%7Cgb%7CEFC39261%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084873%7Cgb%7CEFC38561%2E1%7C.for.24398-25704.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24398-25704.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24398-25704.gi%7C284084873%7Cgb%7CEFC38561%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083993%7Cgb%7CEFC37690%2E1%7C.for.24192-25683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24192-25683.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24192-25683.gi%7C284083993%7Cgb%7CEFC37690%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096422%7Cgb%7CEFC50050%2E1%7C.for.24189-25560.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25560.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25560.gi%7C284096422%7Cgb%7CEFC50050%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088224%7Cgb%7CEFC41889%2E1%7C.for.24192-25692.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24192-25692.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24192-25692.gi%7C284088224%7Cgb%7CEFC41889%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091020%7Cgb%7CEFC44669%2E1%7C.for.24189-25689.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25689.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25689.gi%7C284091020%7Cgb%7CEFC44669%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096438%7Cgb%7CEFC50066%2E1%7C.for.23972-25725.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.23972-25725.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.23972-25725.gi%7C284096438%7Cgb%7CEFC50066%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093840%7Cgb%7CEFC47476%2E1%7C.for.24189-25344.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25344.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25344.gi%7C284093840%7Cgb%7CEFC47476%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088894%7Cgb%7CEFC42555%2E1%7C.for.24180-25692.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24180-25692.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24180-25692.gi%7C284088894%7Cgb%7CEFC42555%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091589%7Cgb%7CEFC45235%2E1%7C.for.24189-25677.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25677.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25677.gi%7C284091589%7Cgb%7CEFC45235%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093839%7Cgb%7CEFC47475%2E1%7C.for.24467-25479.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24467-25479.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24467-25479.gi%7C284093839%7Cgb%7CEFC47475%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090020%7Cgb%7CEFC43674%2E1%7C.for.24189-25677.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25677.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25677.gi%7C284090020%7Cgb%7CEFC43674%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089972%7Cgb%7CEFC43626%2E1%7C.for.28936-30463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.28936-30463.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.28936-30463.gi%7C284089972%7Cgb%7CEFC43626%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086548%7Cgb%7CEFC40224%2E1%7C.for.30291-32151.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.30291-32151.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.30291-32151.gi%7C284086548%7Cgb%7CEFC40224%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087802%7Cgb%7CEFC41469%2E1%7C.for.37878-39943.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.37878-39943.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.37878-39943.gi%7C284087802%7Cgb%7CEFC41469%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085561%7Cgb%7CEFC39244%2E1%7C.for.37914-39934.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.37914-39934.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.37914-39934.gi%7C284085561%7Cgb%7CEFC39244%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087851%7Cgb%7CEFC41518%2E1%7C.for.40044-43012.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.40044-43012.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.40044-43012.gi%7C284087851%7Cgb%7CEFC41518%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097222%7Cgb%7CEFC50849%2E1%7C.for.42455-43652.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.42455-43652.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.42455-43652.gi%7C284097222%7Cgb%7CEFC50849%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086625%7Cgb%7CEFC40300%2E1%7C.for.43749-45472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43749-45472.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43749-45472.gi%7C284086625%7Cgb%7CEFC40300%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083255%7Cgb%7CEFC36960%2E1%7C.for.43749-45616.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43749-45616.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43749-45616.gi%7C284083255%7Cgb%7CEFC36960%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086635%7Cgb%7CEFC40310%2E1%7C.for.43749-45616.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43749-45616.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43749-45616.gi%7C284086635%7Cgb%7CEFC40310%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084290%7Cgb%7CEFC37984%2E1%7C.for.43749-45412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43749-45412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43749-45412.gi%7C284084290%7Cgb%7CEFC37984%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089955%7Cgb%7CEFC43609%2E1%7C.for.45082-47466.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.45082-47466.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.45082-47466.gi%7C284089955%7Cgb%7CEFC43609%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089829%7Cgb%7CEFC43484%2E1%7C.for.48907-51063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.48907-51063.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.48907-51063.gi%7C284089829%7Cgb%7CEFC43484%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089812%7Cgb%7CEFC43467%2E1%7C.for.50900-51968.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.50900-51968.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.50900-51968.gi%7C284089812%7Cgb%7CEFC43467%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088559%7Cgb%7CEFC42222%2E1%7C.for.54523-58496.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.54523-58496.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.54523-58496.gi%7C284088559%7Cgb%7CEFC42222%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083620%7Cgb%7CEFC37321%2E1%7C.for.54475-58466.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.54475-58466.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.54475-58466.gi%7C284083620%7Cgb%7CEFC37321%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095187%7Cgb%7CEFC48819%2E1%7C.for.58139-59411.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58139-59411.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58139-59411.gi%7C284095187%7Cgb%7CEFC48819%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088013%7Cgb%7CEFC41679%2E1%7C.for.58145-59459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58145-59459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58145-59459.gi%7C284088013%7Cgb%7CEFC41679%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088877%7Cgb%7CEFC42538%2E1%7C.for.58079-59411.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58079-59411.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58079-59411.gi%7C284088877%7Cgb%7CEFC42538%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097251%7Cgb%7CEFC50878%2E1%7C.for.58136-59432.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58136-59432.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58136-59432.gi%7C284097251%7Cgb%7CEFC50878%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096640%7Cgb%7CEFC50267%2E1%7C.for.58139-59423.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58139-59423.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58139-59423.gi%7C284096640%7Cgb%7CEFC50267%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095576%7Cgb%7CEFC49206%2E1%7C.for.58136-59444.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58136-59444.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58136-59444.gi%7C284095576%7Cgb%7CEFC49206%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083114%7Cgb%7CEFC36821%2E1%7C.for.62510-64790.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.62510-64790.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.62510-64790.gi%7C284083114%7Cgb%7CEFC36821%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091204%7Cgb%7CEFC44852%2E1%7C.for.66491-67593.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.66491-67593.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.66491-67593.gi%7C284091204%7Cgb%7CEFC44852%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089467%7Cgb%7CEFC43124%2E1%7C.for.70944-72178.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.70944-72178.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.70944-72178.gi%7C284089467%7Cgb%7CEFC43124%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091753%7Cgb%7CEFC45398%2E1%7C.for.78704-80046.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.78704-80046.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.78704-80046.gi%7C284091753%7Cgb%7CEFC45398%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094302%7Cgb%7CEFC47936%2E1%7C.for.78710-80052.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.78710-80052.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.78710-80052.gi%7C284094302%7Cgb%7CEFC47936%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089980%7Cgb%7CEFC43634%2E1%7C.for.78704-80046.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.78704-80046.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.78704-80046.gi%7C284089980%7Cgb%7CEFC43634%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083305%7Cgb%7CEFC37010%2E1%7C.for.90489-92214.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90489-92214.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90489-92214.gi%7C284083305%7Cgb%7CEFC37010%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086189%7Cgb%7CEFC39867%2E1%7C.for.90489-92214.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90489-92214.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90489-92214.gi%7C284086189%7Cgb%7CEFC39867%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082382%7Cgb%7CEFC36106%2E1%7C.for.90489-92214.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90489-92214.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90489-92214.gi%7C284082382%7Cgb%7CEFC36106%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:18 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:20 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 2 ...processing 1 of 2 total clusters:20 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.1925-4163.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.1925-4163.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.1925-4163.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.8698-9606.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.8698-9606.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.8698-9606.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.14145-15107.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.14145-15107.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.14145-15107.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.15856-20160.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.15856-20160.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.15856-20160.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.20920-22441.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.20920-22441.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.20920-22441.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.24226-26714.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.24226-26714.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.24226-26714.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.29135-30263.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.29135-30263.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.29135-30263.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.40243-43899.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.40243-43899.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.40243-43899.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.54674-59244.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.54674-59244.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.54674-59244.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.65794-66900.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.65794-66900.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.65794-66900.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.78887-80447.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.78887-80447.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.78887-80447.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.88021-89770.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.88021-89770.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.88021-89770.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.90909-91875.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.90909-91875.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.90909-91875.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.6570-7836.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.6570-7836.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.6570-7836.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.13029-13693.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.13029-13693.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.13029-13693.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.22867-23866.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.22867-23866.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.22867-23866.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.26460-28106.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.26460-28106.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.26460-28106.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.30472-31951.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.30472-31951.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.30472-31951.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.31983-35892.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.31983-35892.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.31983-35892.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.37681-39774.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.37681-39774.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.37681-39774.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.43948-47698.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.43948-47698.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.43948-47698.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.49106-50961.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.49106-50961.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.49106-50961.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.51024-51988.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.51024-51988.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.51024-51988.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.62656-64590.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.62656-64590.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.62656-64590.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.71143-71978.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.71143-71978.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.71143-71978.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.73745-75386.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.73745-75386.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.73745-75386.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.80064-81014.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.80064-81014.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.80064-81014.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.82536-85102.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.82536-85102.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.82536-85102.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.89475-90484.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.89475-90484.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.89475-90484.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.90688-92014.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.90688-92014.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.90688-92014.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C15 Length: 88282 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:5 current j:0 j_size:5 current j:1 j_size:5 current j:2 j_size:5 current j:3 j_size:5 current j:4 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C15.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C15.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:6 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13711%7C1108770679036.for.1-1127.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.1-1127.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.1-1127.Ar_EST_120301b_c13711%7C1108770679036.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10644%7Cclaudia-husseneder_plate25-d09.for.3186-4275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.3186-4275.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.3186-4275.Ar_EST_120301b_c10644%7Cclaudia-husseneder_plate25-d09.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7062%7Cprotein.for.9348-10762.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9348-10762.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9348-10762.Ar_EST_120301b_rep_c7062%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20489%7Cprotein.for.9348-10472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9348-10472.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9348-10472.Ar_EST_120301b_rep_c20489%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19779%7Cprotein.for.9460-10762.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9460-10762.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9460-10762.Ar_EST_120301b_rep_c19779%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6989%7Cprotein.for.9353-10747.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9353-10747.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9353-10747.Ar_EST_120301b_rep_c6989%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7201%7Cprotein.for.9452-10750.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9452-10750.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9452-10750.Ar_EST_120301b_rep_c7201%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20535%7C40s.for.9635-10758.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9635-10758.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9635-10758.Ar_EST_120301b_rep_c20535%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c847%7Csphingomyelin.for.16096-17482.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.16096-17482.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.16096-17482.Ar_EST_120301b_c847%7Csphingomyelin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15302%7Camp-dependent.for.17102-18099.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.17102-18099.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.17102-18099.Ar_EST_120301b_c15302%7Camp-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8900%7Cpropionate--.for.17355-18785.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.17355-18785.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.17355-18785.Ar_EST_120301b_c8900%7Cpropionate--.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12453%7Cras-related.for.18577-19838.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.18577-19838.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.18577-19838.Ar_EST_120301b_c12453%7Cras-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c101%7Chormone.for.20132-22409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.20132-22409.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.20132-22409.Ar_EST_120301b_c101%7Chormone.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3533%7Clipase.for.21106-23324.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.21106-23324.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.21106-23324.Ar_EST_120301b_c3533%7Clipase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10006%7Cau284314.for.23945-25162.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.23945-25162.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.23945-25162.Ar_EST_120301b_rep_c10006%7Cau284314.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3682%7Cnegative.for.24459-26498.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.24459-26498.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.24459-26498.Ar_EST_120301b_c3682%7Cnegative.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig488%7Cv-type.for.25755-27402.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25755-27402.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25755-27402.120301b_Contig488%7Cv-type.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19184%7Cat3g58730-like.for.25880-27038.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25880-27038.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25880-27038.Ar_EST_120301b_c19184%7Cat3g58730-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12067%7Cfn735362.for.27398-28751.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.27398-28751.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.27398-28751.Ar_EST_120301b_c12067%7Cfn735362.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4543%7Cv-type.for.28132-30143.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.28132-30143.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.28132-30143.Ar_EST_120301b_rep_c4543%7Cv-type.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6117%7Cv-type.for.28143-30220.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.28143-30220.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.28143-30220.Ar_EST_120301b_rep_c6117%7Cv-type.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6452%7Cv-atpase.for.28152-29423.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.28152-29423.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.28152-29423.Ar_EST_120301b_rep_c6452%7Cv-atpase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16840%7Cstructural.for.29632-31068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.29632-31068.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.29632-31068.Ar_EST_120301b_c16840%7Cstructural.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10412%7Cmyosin.for.30668-32164.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.30668-32164.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.30668-32164.Ar_EST_120301b_c10412%7Cmyosin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9051%7Cpoly.for.36033-37417.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.36033-37417.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.36033-37417.Ar_EST_120301b_c9051%7Cpoly.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19738%7Cpoly.for.35801-37206.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.35801-37206.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.35801-37206.Ar_EST_120301b_c19738%7Cpoly.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17368%7C5348_b09_d18z_077.for.36714-37988.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.36714-37988.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.36714-37988.Ar_EST_120301b_c17368%7C5348_b09_d18z_077.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17502%7Csperm.for.44875-46147.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.44875-46147.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.44875-46147.Ar_EST_120301b_c17502%7Csperm.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10104%7Cnbero1ch_t3_003_f01_28apr2006_005.for.46523-47950.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.46523-47950.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.46523-47950.Ar_EST_120301b_c10104%7Cnbero1ch_t3_003_f01_28apr2006_005.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15477%7C010511olea005840ht.for.47761-48883.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.47761-48883.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.47761-48883.Ar_EST_120301b_c15477%7C010511olea005840ht.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12496%7Cmitotic.for.48559-49821.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.48559-49821.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.48559-49821.Ar_EST_120301b_c12496%7Cmitotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig631%7Cabc.for.49870-51710.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.49870-51710.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.49870-51710.120301b_Contig631%7Cabc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig362%7Cabc.for.50804-52767.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.50804-52767.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.50804-52767.120301b_Contig362%7Cabc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig591%7Cactin.for.52012-54049.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52012-54049.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52012-54049.120301b_Contig591%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19773%7Cactin.for.52309-53610.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52309-53610.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52309-53610.Ar_EST_120301b_c19773%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14966%7Cras-related.for.58383-59584.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.58383-59584.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.58383-59584.Ar_EST_120301b_rep_c14966%7Cras-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14539%7Chydra.for.65120-66122.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.65120-66122.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.65120-66122.Ar_EST_120301b_c14539%7Chydra.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13213%7Cintron-binding.for.68211-69663.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.68211-69663.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.68211-69663.Ar_EST_120301b_c13213%7Cintron-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2756%7Csen1p.for.68632-69999.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.68632-69999.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.68632-69999.Ar_EST_120301b_c2756%7Csen1p.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10437%7Cintron-binding.for.69298-70670.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.69298-70670.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.69298-70670.Ar_EST_120301b_c10437%7Cintron-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15450%7Cintron-binding.for.70035-71377.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.70035-71377.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.70035-71377.Ar_EST_120301b_c15450%7Cintron-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1912%7Cpatatin.for.71801-73209.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.71801-73209.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.71801-73209.Ar_EST_120301b_c1912%7Cpatatin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10248%7Cfp871808.for.72440-73995.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.72440-73995.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.72440-73995.Ar_EST_120301b_c10248%7Cfp871808.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11840%7Cmembrane.for.73620-75243.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.73620-75243.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.73620-75243.Ar_EST_120301b_c11840%7Cmembrane.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14999%7Cpredicted.for.81251-82657.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.81251-82657.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.81251-82657.Ar_EST_120301b_c14999%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8376%7Cperoxisomal.for.82450-83986.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.82450-83986.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.82450-83986.Ar_EST_120301b_c8376%7Cperoxisomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19284%7Cagencourt_61881600.for.82251-83486.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.82251-83486.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.82251-83486.Ar_EST_120301b_c19284%7Cagencourt_61881600.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15193%7Cabc.for.84208-85171.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84208-85171.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84208-85171.Ar_EST_120301b_c15193%7Cabc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14003%7Cabc.for.85483-86603.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.85483-86603.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.85483-86603.Ar_EST_120301b_c14003%7Cabc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16443%7Caplysia.for.87251-88282.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.87251-88282.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.87251-88282.Ar_EST_120301b_c16443%7Caplysia.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:44 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:40 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:44 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:50 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:43 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:53 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:60 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:58 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:43 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:36 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093316%7Cgb%7CEFC46954%2E1%7C.for.9415-10717.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9415-10717.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9415-10717.gi%7C284093316%7Cgb%7CEFC46954%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091441%7Cgb%7CEFC45088%2E1%7C.for.10193-12362.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.10193-12362.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.10193-12362.gi%7C284091441%7Cgb%7CEFC45088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091342%7Cgb%7CEFC44989%2E1%7C.for.11672-13489.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.11672-13489.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.11672-13489.gi%7C284091342%7Cgb%7CEFC44989%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088481%7Cgb%7CEFC42144%2E1%7C.for.17102-18870.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.17102-18870.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.17102-18870.gi%7C284088481%7Cgb%7CEFC42144%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084487%7Cgb%7CEFC38179%2E1%7C.for.25758-27251.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25758-27251.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25758-27251.gi%7C284084487%7Cgb%7CEFC38179%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090397%7Cgb%7CEFC44049%2E1%7C.for.25761-27182.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25761-27182.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25761-27182.gi%7C284090397%7Cgb%7CEFC44049%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083009%7Cgb%7CEFC36717%2E1%7C.for.25761-27230.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25761-27230.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25761-27230.gi%7C284083009%7Cgb%7CEFC36717%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092236%7Cgb%7CEFC45879%2E1%7C.for.28469-30195.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.28469-30195.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.28469-30195.gi%7C284092236%7Cgb%7CEFC45879%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096677%7Cgb%7CEFC50304%2E1%7C.for.29853-30916.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.29853-30916.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.29853-30916.gi%7C284096677%7Cgb%7CEFC50304%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091339%7Cgb%7CEFC44986%2E1%7C.for.34890-37451.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.34890-37451.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.34890-37451.gi%7C284091339%7Cgb%7CEFC44986%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089040%7Cgb%7CEFC42700%2E1%7C.for.49909-52718.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.49909-52718.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.49909-52718.gi%7C284089040%7Cgb%7CEFC42700%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082540%7Cgb%7CEFC36256%2E1%7C.for.50258-52748.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.50258-52748.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.50258-52748.gi%7C284082540%7Cgb%7CEFC36256%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089317%7Cgb%7CEFC42975%2E1%7C.for.50602-52748.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.50602-52748.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.50602-52748.gi%7C284089317%7Cgb%7CEFC42975%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093022%7Cgb%7CEFC46662%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284093022%7Cgb%7CEFC46662%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084913%7Cgb%7CEFC38601%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284084913%7Cgb%7CEFC38601%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091907%7Cgb%7CEFC45551%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284091907%7Cgb%7CEFC45551%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081216%7Cgb%7CEFC35341%2E1%7C.for.52748-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52748-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52748-54057.gi%7C284081216%7Cgb%7CEFC35341%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094255%7Cgb%7CEFC47890%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284094255%7Cgb%7CEFC47890%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085698%7Cgb%7CEFC39380%2E1%7C.for.52271-54060.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52271-54060.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52271-54060.gi%7C284085698%7Cgb%7CEFC39380%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082818%7Cgb%7CEFC36529%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284082818%7Cgb%7CEFC36529%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092206%7Cgb%7CEFC45849%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284092206%7Cgb%7CEFC45849%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093050%7Cgb%7CEFC46689%2E1%7C.for.52328-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52328-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52328-54057.gi%7C284093050%7Cgb%7CEFC46689%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081499%7Cgb%7CEFC35479%2E1%7C.for.52325-53676.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52325-53676.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52325-53676.gi%7C284081499%7Cgb%7CEFC35479%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090387%7Cgb%7CEFC44039%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284090387%7Cgb%7CEFC44039%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081169%7Cgb%7CEFC35319%2E1%7C.for.52331-53442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52331-53442.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52331-53442.gi%7C284081169%7Cgb%7CEFC35319%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091080%7Cgb%7CEFC44728%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284091080%7Cgb%7CEFC44728%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C7140539%7Cgb%7CAAF37002%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C7140539%7Cgb%7CAAF37002%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C41016928%7Csp%7CQ9NJV4%2E1%7CACT1_NAEGR.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C41016928%7Csp%7CQ9NJV4%2E1%7CACT1_NAEGR.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089912%7Cgb%7CEFC43567%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284089912%7Cgb%7CEFC43567%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091169%7Cgb%7CEFC44817%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284091169%7Cgb%7CEFC44817%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089027%7Cgb%7CEFC42687%2E1%7C.for.52334-54063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54063.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54063.gi%7C284089027%7Cgb%7CEFC42687%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094182%7Cgb%7CEFC47817%2E1%7C.for.52331-53367.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52331-53367.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52331-53367.gi%7C284094182%7Cgb%7CEFC47817%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092093%7Cgb%7CEFC45736%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284092093%7Cgb%7CEFC45736%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083654%7Cgb%7CEFC37355%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284083654%7Cgb%7CEFC37355%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096006%7Cgb%7CEFC49635%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284096006%7Cgb%7CEFC49635%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093025%7Cgb%7CEFC46665%2E1%7C.for.52556-54066.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52556-54066.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52556-54066.gi%7C284093025%7Cgb%7CEFC46665%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090925%7Cgb%7CEFC44574%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284090925%7Cgb%7CEFC44574%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086629%7Cgb%7CEFC40304%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284086629%7Cgb%7CEFC40304%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095925%7Cgb%7CEFC49554%2E1%7C.for.52331-54066.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52331-54066.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52331-54066.gi%7C284095925%7Cgb%7CEFC49554%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084108%7Cgb%7CEFC37804%2E1%7C.for.52721-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52721-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52721-54057.gi%7C284084108%7Cgb%7CEFC37804%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082060%7Cgb%7CEFC35846%2E1%7C.for.58454-59577.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.58454-59577.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.58454-59577.gi%7C284082060%7Cgb%7CEFC35846%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082068%7Cgb%7CEFC35853%2E1%7C.for.61526-64275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64275.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64275.gi%7C284082068%7Cgb%7CEFC35853%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084087%7Cgb%7CEFC37783%2E1%7C.for.61526-64254.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64254.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64254.gi%7C284084087%7Cgb%7CEFC37783%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089082%7Cgb%7CEFC42742%2E1%7C.for.61514-64407.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61514-64407.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61514-64407.gi%7C284089082%7Cgb%7CEFC42742%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088982%7Cgb%7CEFC42642%2E1%7C.for.61526-64446.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64446.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64446.gi%7C284088982%7Cgb%7CEFC42642%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082474%7Cgb%7CEFC36192%2E1%7C.for.61526-64428.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.gi%7C284082474%7Cgb%7CEFC36192%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082092%7Cgb%7CEFC35872%2E1%7C.for.61481-64428.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61481-64428.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61481-64428.gi%7C284082092%7Cgb%7CEFC35872%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085337%7Cgb%7CEFC39022%2E1%7C.for.61526-64410.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64410.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64410.gi%7C284085337%7Cgb%7CEFC39022%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083266%7Cgb%7CEFC36971%2E1%7C.for.61487-64431.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61487-64431.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61487-64431.gi%7C284083266%7Cgb%7CEFC36971%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093774%7Cgb%7CEFC47410%2E1%7C.for.61526-64284.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64284.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64284.gi%7C284093774%7Cgb%7CEFC47410%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089683%7Cgb%7CEFC43339%2E1%7C.for.61526-64428.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.gi%7C284089683%7Cgb%7CEFC43339%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081057%7Cgb%7CEFC35279%2E1%7C.for.61514-64422.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61514-64422.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61514-64422.gi%7C284081057%7Cgb%7CEFC35279%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082440%7Cgb%7CEFC36159%2E1%7C.for.61592-64470.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61592-64470.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61592-64470.gi%7C284082440%7Cgb%7CEFC36159%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082314%7Cgb%7CEFC36048%2E1%7C.for.61526-64428.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.gi%7C284082314%7Cgb%7CEFC36048%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081028%7Cgb%7CEFC35268%2E1%7C.for.61526-64428.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.gi%7C284081028%7Cgb%7CEFC35268%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093921%7Cgb%7CEFC47557%2E1%7C.for.61526-64428.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.gi%7C284093921%7Cgb%7CEFC47557%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082136%7Cgb%7CEFC35906%2E1%7C.for.61526-64428.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.gi%7C284082136%7Cgb%7CEFC35906%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084171%7Cgb%7CEFC37866%2E1%7C.for.61526-64467.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64467.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64467.gi%7C284084171%7Cgb%7CEFC37866%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080810%7Cgb%7CEFC35195%2E1%7C.for.61640-64254.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61640-64254.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61640-64254.gi%7C284080810%7Cgb%7CEFC35195%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096409%7Cgb%7CEFC50037%2E1%7C.for.81597-82880.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.81597-82880.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.81597-82880.gi%7C284096409%7Cgb%7CEFC50037%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082808%7Cgb%7CEFC36519%2E1%7C.for.82936-84050.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.82936-84050.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.82936-84050.gi%7C284082808%7Cgb%7CEFC36519%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089213%7Cgb%7CEFC42872%2E1%7C.for.83354-88282.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.83354-88282.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.83354-88282.gi%7C284089213%7Cgb%7CEFC42872%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096078%7Cgb%7CEFC49707%2E1%7C.for.84602-86190.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84602-86190.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84602-86190.gi%7C284096078%7Cgb%7CEFC49707%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096910%7Cgb%7CEFC50537%2E1%7C.for.84545-86139.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84545-86139.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84545-86139.gi%7C284096910%7Cgb%7CEFC50537%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088030%7Cgb%7CEFC41696%2E1%7C.for.83441-88282.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.83441-88282.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.83441-88282.gi%7C284088030%7Cgb%7CEFC41696%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094270%7Cgb%7CEFC47905%2E1%7C.for.84614-86178.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84614-86178.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84614-86178.gi%7C284094270%7Cgb%7CEFC47905%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094672%7Cgb%7CEFC48305%2E1%7C.for.84695-86136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84695-86136.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84695-86136.gi%7C284094672%7Cgb%7CEFC48305%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094721%7Cgb%7CEFC48354%2E1%7C.for.84614-86181.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84614-86181.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84614-86181.gi%7C284094721%7Cgb%7CEFC48354%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 27 ...processing 1 of 27 ...processing 2 of 27 ...processing 3 of 27 ...processing 4 of 27 ...processing 5 of 27 ...processing 6 of 27 ...processing 7 of 27 ...processing 8 of 27 ...processing 9 of 27 ...processing 10 of 27 ...processing 11 of 27 ...processing 12 of 27 ...processing 13 of 27 ...processing 14 of 27 ...processing 15 of 27 ...processing 16 of 27 ...processing 17 of 27 ...processing 18 of 27 ...processing 19 of 27 ...processing 20 of 27 ...processing 21 of 27 ...processing 22 of 27 ...processing 23 of 27 ...processing 24 of 27 ...processing 25 of 27 ...processing 26 of 27 total clusters:12 now processing 0 ...processing 0 of 11 ...processing 1 of 11 ...processing 2 of 11 ...processing 3 of 11 ...processing 4 of 11 ...processing 5 of 11 ...processing 6 of 11 ...processing 7 of 11 ...processing 8 of 11 ...processing 9 of 11 ...processing 10 of 11 total clusters:12 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:12 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 26 ...processing 1 of 26 ...processing 2 of 26 ...processing 3 of 26 ...processing 4 of 26 ...processing 5 of 26 ...processing 6 of 26 ...processing 7 of 26 ...processing 8 of 26 ...processing 9 of 26 ...processing 10 of 26 ...processing 11 of 26 ...processing 12 of 26 ...processing 13 of 26 ...processing 14 of 26 ...processing 15 of 26 ...processing 16 of 26 ...processing 17 of 26 ...processing 18 of 26 ...processing 19 of 26 ...processing 20 of 26 ...processing 21 of 26 ...processing 22 of 26 ...processing 23 of 26 ...processing 24 of 26 ...processing 25 of 26 total clusters:12 now processing 0 ...processing 0 of 20 ...processing 1 of 20 ...processing 2 of 20 ...processing 3 of 20 ...processing 4 of 20 ...processing 5 of 20 ...processing 6 of 20 ...processing 7 of 20 ...processing 8 of 20 ...processing 9 of 20 ...processing 10 of 20 ...processing 11 of 20 ...processing 12 of 20 ...processing 13 of 20 ...processing 14 of 20 ...processing 15 of 20 ...processing 16 of 20 ...processing 17 of 20 ...processing 18 of 20 ...processing 19 of 20 ...trimming the rest total clusters:12 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:19 now processing 0 total clusters:19 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:19 now processing 0 total clusters:19 now processing 0 total clusters:19 now processing 0 total clusters:19 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:19 now processing 0 total clusters:19 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:19 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:19 now processing 0 total clusters:19 now processing 0 total clusters:19 now processing 0 total clusters:19 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:19 now processing 0 total clusters:19 now processing 0 total clusters:19 now processing 0 total clusters:19 now processing 0 total clusters:19 now processing 0 total clusters:19 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:17 now processing 0 ...processing 0 of 20 ...processing 1 of 20 ...processing 2 of 20 ...processing 3 of 20 ...processing 4 of 20 ...processing 5 of 20 ...processing 6 of 20 ...processing 7 of 20 ...processing 8 of 20 ...processing 9 of 20 ...processing 10 of 20 ...processing 11 of 20 ...processing 12 of 20 ...processing 13 of 20 ...processing 14 of 20 ...processing 15 of 20 ...processing 16 of 20 ...processing 17 of 20 ...processing 18 of 20 ...processing 19 of 20 ...trimming the rest ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.65-927.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.65-927.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.65-927.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.10392-12162.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.10392-12162.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.10392-12162.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.16295-17282.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.16295-17282.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.16295-17282.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.18776-19638.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.18776-19638.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.18776-19638.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.24658-27202.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.24658-27202.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.24658-27202.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.27597-30020.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.27597-30020.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.27597-30020.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.35089-37251.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.35089-37251.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.35089-37251.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.45074-45947.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.45074-45947.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.45074-45947.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.46722-47750.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.46722-47750.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.46722-47750.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.48758-49621.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.48758-49621.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.48758-49621.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.50069-52569.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.50069-52569.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.50069-52569.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.58572-59384.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.58572-59384.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.58572-59384.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.72000-75043.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.72000-75043.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.72000-75043.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.81796-83836.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.81796-83836.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.81796-83836.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.9547-10562.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.9547-10562.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.9547-10562.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.11871-13289.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.11871-13289.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.11871-13289.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.17554-18622.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.17554-18622.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.17554-18622.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.20331-23124.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.20331-23124.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.20331-23124.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.29831-31964.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.29831-31964.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.29831-31964.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.36913-37788.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.36913-37788.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.36913-37788.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.47960-48712.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.47960-48712.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.47960-48712.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.52211-53875.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.52211-53875.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.52211-53875.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.61680-64294.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.61680-64294.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.61680-64294.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.68410-71177.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.68410-71177.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.68410-71177.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.81450-82457.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.81450-82457.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.81450-82457.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.83553-88154.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.83553-88154.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.83553-88154.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C16 Length: 52806 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:1 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C16.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C16.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig74%7Cras.for.4626-7621.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.4626-7621.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.4626-7621.120301b_Contig74%7Cras.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16859%7Cras.for.2491-3652.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.2491-3652.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.2491-3652.Ar_EST_120301b_c16859%7Cras.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1186%7Csecreted.for.2145-4070.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.2145-4070.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.2145-4070.120301b_Contig1186%7Csecreted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20200%7Cg.for.5582-6832.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.5582-6832.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.5582-6832.Ar_EST_120301b_rep_c20200%7Cg.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7704%7C40s.for.2996-5442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.2996-5442.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.2996-5442.Ar_EST_120301b_c7704%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14467%7Ccu605174.for.8339-9523.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.8339-9523.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.8339-9523.Ar_EST_120301b_rep_c14467%7Ccu605174.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7171%7Cly_yit_dp1235.for.8342-9199.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.8342-9199.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.8342-9199.Ar_EST_120301b_rep_c7171%7Cly_yit_dp1235.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16260%7Cmethyltransferase.for.11915-13043.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.11915-13043.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.11915-13043.Ar_EST_120301b_c16260%7Cmethyltransferase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c612%7C3.for.13756-15898.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.13756-15898.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.13756-15898.Ar_EST_120301b_c612%7C3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14163%7Cheterotrimeric.for.14536-15940.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14536-15940.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14536-15940.Ar_EST_120301b_c14163%7Cheterotrimeric.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1012%7Cras-related.for.16093-17594.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.16093-17594.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.16093-17594.120301b_Contig1012%7Cras-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9994%7CFP067752.for.20020-21546.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.20020-21546.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.20020-21546.Ar_EST_120301b_c9994%7CFP067752.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19755%7C---NA---.for.19886-21213.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.19886-21213.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.19886-21213.Ar_EST_120301b_c19755%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1652%7Cpredicted.for.22962-24406.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.22962-24406.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.22962-24406.Ar_EST_120301b_c1652%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12976%7Cdym_chick.for.24127-25530.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.24127-25530.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.24127-25530.Ar_EST_120301b_c12976%7Cdym_chick.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4302%7Cnad-dependent.for.27610-29630.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.27610-29630.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.27610-29630.Ar_EST_120301b_rep_c4302%7Cnad-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4959%7Cnad-dependent.for.27638-29648.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.27638-29648.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.27638-29648.Ar_EST_120301b_rep_c4959%7Cnad-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13941%7Cnucleotide.for.28457-29556.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.28457-29556.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.28457-29556.Ar_EST_120301b_rep_c13941%7Cnucleotide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14530%7Chypothetical.for.29417-30831.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.29417-30831.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.29417-30831.Ar_EST_120301b_c14530%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1221%7Cgateway.for.31131-32485.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.31131-32485.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.31131-32485.Ar_EST_120301b_c1221%7Cgateway.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2400%7Ctransmembrane.for.31863-33502.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.31863-33502.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.31863-33502.Ar_EST_120301b_c2400%7Ctransmembrane.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16743%7Catp.for.36527-37979.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.36527-37979.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.36527-37979.Ar_EST_120301b_c16743%7Catp.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3646%7Cisoform.for.35541-37378.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.35541-37378.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.35541-37378.Ar_EST_120301b_c3646%7Cisoform.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16709%7C---NA---.for.38655-40235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.38655-40235.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.38655-40235.Ar_EST_120301b_c16709%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10548%7Cpopulus.for.38111-39685.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.38111-39685.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.38111-39685.Ar_EST_120301b_c10548%7Cpopulus.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12154%7Ctransposase.for.41740-43156.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.41740-43156.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.41740-43156.Ar_EST_120301b_c12154%7Ctransposase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13040%7Ccnsn01-f-004961-501.for.44089-45039.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.44089-45039.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.44089-45039.Ar_EST_120301b_c13040%7Ccnsn01-f-004961-501.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13845%7C---NA---.for.49598-50912.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.49598-50912.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.49598-50912.Ar_EST_120301b_c13845%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13073%7Cccashart06b08r.for.50532-51611.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.50532-51611.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.50532-51611.Ar_EST_120301b_c13073%7Cccashart06b08r.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13711%7C1108770679036.for.51968-52806.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.51968-52806.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.51968-52806.Ar_EST_120301b_c13711%7C1108770679036.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:6 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:12 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:5 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:7 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:6 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:6 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:9 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:6 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:11 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:6 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081967%7Cgb%7CEFC35778%2E1%7C.for.6355-7489.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.6355-7489.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.6355-7489.gi%7C284081967%7Cgb%7CEFC35778%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092652%7Cgb%7CEFC46293%2E1%7C.for.14705-16123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14705-16123.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14705-16123.gi%7C284092652%7Cgb%7CEFC46293%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084915%7Cgb%7CEFC38603%2E1%7C.for.14639-16114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14639-16114.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14639-16114.gi%7C284084915%7Cgb%7CEFC38603%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084712%7Cgb%7CEFC38402%2E1%7C.for.14705-16123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14705-16123.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14705-16123.gi%7C284084712%7Cgb%7CEFC38402%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090770%7Cgb%7CEFC44420%2E1%7C.for.14678-16123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14678-16123.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14678-16123.gi%7C284090770%7Cgb%7CEFC44420%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083518%7Cgb%7CEFC37220%2E1%7C.for.14693-16123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14693-16123.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14693-16123.gi%7C284083518%7Cgb%7CEFC37220%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095980%7Cgb%7CEFC49609%2E1%7C.for.14738-16123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14738-16123.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14738-16123.gi%7C284095980%7Cgb%7CEFC49609%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091782%7Cgb%7CEFC45427%2E1%7C.for.14705-15853.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14705-15853.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14705-15853.gi%7C284091782%7Cgb%7CEFC45427%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085503%7Cgb%7CEFC39186%2E1%7C.for.14732-16123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14732-16123.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14732-16123.gi%7C284085503%7Cgb%7CEFC39186%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093388%7Cgb%7CEFC47026%2E1%7C.for.14798-15723.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14798-15723.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14798-15723.gi%7C284093388%7Cgb%7CEFC47026%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095344%7Cgb%7CEFC48975%2E1%7C.for.14705-16105.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14705-16105.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14705-16105.gi%7C284095344%7Cgb%7CEFC48975%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095754%7Cgb%7CEFC49384%2E1%7C.for.14693-16105.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14693-16105.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14693-16105.gi%7C284095754%7Cgb%7CEFC49384%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084832%7Cgb%7CEFC38521%2E1%7C.for.16083-17862.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.16083-17862.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.16083-17862.gi%7C284084832%7Cgb%7CEFC38521%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096643%7Cgb%7CEFC50270%2E1%7C.for.16077-17862.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.16077-17862.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.16077-17862.gi%7C284096643%7Cgb%7CEFC50270%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097000%7Cgb%7CEFC50627%2E1%7C.for.17195-19077.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.17195-19077.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.17195-19077.gi%7C284097000%7Cgb%7CEFC50627%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095112%7Cgb%7CEFC48744%2E1%7C.for.25157-28242.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.25157-28242.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.25157-28242.gi%7C284095112%7Cgb%7CEFC48744%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091376%7Cgb%7CEFC45023%2E1%7C.for.27629-29588.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.27629-29588.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.27629-29588.gi%7C284091376%7Cgb%7CEFC45023%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:5 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:5 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:5 now processing 0 total clusters:5 now processing 0 total clusters:5 now processing 0 in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:4 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:4 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:4 now processing 0 total clusters:4 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:10 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:10 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:10 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.8491-9323.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.8491-9323.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.8491-9323.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.20085-21013.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.20085-21013.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.20085-21013.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.23073-25330.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.23073-25330.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.23073-25330.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.29616-32285.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.29616-32285.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.29616-32285.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.35740-37784.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.35740-37784.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.35740-37784.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.38304-40035.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.38304-40035.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.38304-40035.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.52167-52806.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.52167-52806.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.52167-52806.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.2344-7421.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.2344-7421.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.2344-7421.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.14735-15923.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.14735-15923.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.14735-15923.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.16276-18877.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.16276-18877.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.16276-18877.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.25356-29430.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.25356-29430.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.25356-29430.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.32062-33302.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.32062-33302.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.32062-33302.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.41939-42958.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.41939-42958.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.41939-42958.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.44288-44861.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.44288-44861.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.44288-44861.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.49797-50712.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.49797-50712.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.49797-50712.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C17 Length: 92022 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:6 current j:0 j_size:6 current j:1 j_size:6 current j:2 j_size:6 current j:3 j_size:6 current j:4 j_size:6 current j:5 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C17.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C17.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14841%7C---NA---.for.1416-2440.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.1416-2440.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.1416-2440.Ar_EST_120301b_c14841%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12481%7Cpt11-c2-300-003-e01-.for.2068-3358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.2068-3358.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.2068-3358.Ar_EST_120301b_c12481%7Cpt11-c2-300-003-e01-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c152%7Cdisulfide.for.1875-3275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.1875-3275.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.1875-3275.Ar_EST_120301b_c152%7Cdisulfide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12224%7Cproteasome-associated.for.2749-4281.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.2749-4281.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.2749-4281.Ar_EST_120301b_c12224%7Cproteasome-associated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3338%7Cproteasome-associated.for.3465-5694.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.3465-5694.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.3465-5694.Ar_EST_120301b_c3338%7Cproteasome-associated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16010%7Cproteasome-associated.for.5217-6552.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.5217-6552.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.5217-6552.Ar_EST_120301b_c16010%7Cproteasome-associated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14875.for.5785-6871.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.5785-6871.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.5785-6871.Ar_EST_120301b_c14875.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18129%7Cheat.for.7223-8542.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.7223-8542.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.7223-8542.Ar_EST_120301b_c18129%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15944%7C603773189f1.for.10823-11971.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.10823-11971.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.10823-11971.Ar_EST_120301b_c15944%7C603773189f1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11028%7Cauxin.for.11347-13098.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.11347-13098.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.11347-13098.Ar_EST_120301b_c11028%7Cauxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3067%7Crna-binding.for.12713-14508.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.12713-14508.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.12713-14508.Ar_EST_120301b_c3067%7Crna-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15013%7Cnacnu32to.for.16800-18175.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.16800-18175.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.16800-18175.Ar_EST_120301b_c15013%7Cnacnu32to.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3173%7Cconserved.for.16013-17915.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.16013-17915.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.16013-17915.Ar_EST_120301b_c3173%7Cconserved.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8941%7Cmrna-decapping.for.21273-22620.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.21273-22620.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.21273-22620.Ar_EST_120301b_c8941%7Cmrna-decapping.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8091%7Cgram.for.25540-27155.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.25540-27155.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.25540-27155.Ar_EST_120301b_c8091%7Cgram.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9708%7Cprotein.for.26626-28000.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.26626-28000.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.26626-28000.Ar_EST_120301b_c9708%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2949%7Cprotein.for.27412-29105.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.27412-29105.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.27412-29105.Ar_EST_120301b_c2949%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17989%7Cgolgin.for.31210-32198.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.31210-32198.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.31210-32198.Ar_EST_120301b_c17989%7Cgolgin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16259%7Cpolyadenylate-binding.for.30808-32056.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.30808-32056.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.30808-32056.Ar_EST_120301b_c16259%7Cpolyadenylate-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2387%7Cacyl-.for.31890-33234.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.31890-33234.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.31890-33234.Ar_EST_120301b_c2387%7Cacyl-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13344%7Ctranscription.for.33215-34470.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33215-34470.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33215-34470.Ar_EST_120301b_rep_c13344%7Ctranscription.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4140%7Ctranscription.for.33145-34529.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33145-34529.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33145-34529.Ar_EST_120301b_rep_c4140%7Ctranscription.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18913%7Ctranscription.for.33177-34321.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33177-34321.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33177-34321.Ar_EST_120301b_rep_c18913%7Ctranscription.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8510%7Ctranscription.for.33317-34420.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33317-34420.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33317-34420.Ar_EST_120301b_rep_c8510%7Ctranscription.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15808%7Cnascent.for.33280-34495.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33280-34495.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33280-34495.Ar_EST_120301b_rep_c15808%7Cnascent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9214%7Ccoiled-coil.for.39058-40408.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.39058-40408.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.39058-40408.Ar_EST_120301b_c9214%7Ccoiled-coil.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19600%7Ccoiled-coil.for.38864-40377.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.38864-40377.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.38864-40377.Ar_EST_120301b_c19600%7Ccoiled-coil.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18901%7Cdna.for.39766-41076.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.39766-41076.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.39766-41076.Ar_EST_120301b_c18901%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3719%7Cddb1-.for.40713-42856.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.40713-42856.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.40713-42856.Ar_EST_120301b_c3719%7Cddb1-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18822%7Cauf_.for.43214-44648.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.43214-44648.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.43214-44648.Ar_EST_120301b_c18822%7Cauf_.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8190%7Ctilapia.for.43181-44516.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.43181-44516.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.43181-44516.Ar_EST_120301b_c8190%7Ctilapia.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13048%7Ccbs.for.45243-46586.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.45243-46586.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.45243-46586.Ar_EST_120301b_c13048%7Ccbs.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3085%7Cprotein.for.44775-46572.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.44775-46572.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.44775-46572.Ar_EST_120301b_c3085%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19474%7Ccbs.for.45854-47315.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.45854-47315.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.45854-47315.Ar_EST_120301b_c19474%7Ccbs.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3208%7Cdihydrolipoamide.for.46625-48544.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.46625-48544.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.46625-48544.Ar_EST_120301b_c3208%7Cdihydrolipoamide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1995%7Cperoxidase-like.for.52915-54181.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.52915-54181.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.52915-54181.Ar_EST_120301b_c1995%7Cperoxidase-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16093%7Csmall.for.53639-54991.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.53639-54991.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.53639-54991.Ar_EST_120301b_c16093%7Csmall.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10212%7Ccv03-normalized.for.57094-58040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.57094-58040.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.57094-58040.Ar_EST_120301b_c10212%7Ccv03-normalized.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11832%7Ctranscriptional.for.59175-60514.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.59175-60514.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.59175-60514.Ar_EST_120301b_c11832%7Ctranscriptional.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9386%7Caldehyde.for.60398-61477.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.60398-61477.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.60398-61477.Ar_EST_120301b_rep_c9386%7Caldehyde.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5837%7Cubiquitin-ribosomal.for.60397-61481.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.60397-61481.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.60397-61481.Ar_EST_120301b_rep_c5837%7Cubiquitin-ribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10610%7Carsenical.for.67383-68847.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.67383-68847.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.67383-68847.Ar_EST_120301b_c10610%7Carsenical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14571%7Cgrowth.for.81450-82610.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.81450-82610.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.81450-82610.Ar_EST_120301b_c14571%7Cgrowth.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8106%7Cglycosyl.for.87454-89144.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.87454-89144.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.87454-89144.Ar_EST_120301b_c8106%7Cglycosyl.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:25 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:22 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:19 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:22 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:34 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:23 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:29 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:28 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:30 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:26 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096446%7Cgb%7CEFC50074%2E1%7C.for.21443-22914.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.21443-22914.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.21443-22914.gi%7C284096446%7Cgb%7CEFC50074%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088239%7Cgb%7CEFC41904%2E1%7C.for.21428-22911.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.21428-22911.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.21428-22911.gi%7C284088239%7Cgb%7CEFC41904%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088728%7Cgb%7CEFC42390%2E1%7C.for.26581-27899.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.26581-27899.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.26581-27899.gi%7C284088728%7Cgb%7CEFC42390%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093986%7Cgb%7CEFC47622%2E1%7C.for.27297-29125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.27297-29125.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.27297-29125.gi%7C284093986%7Cgb%7CEFC47622%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083389%7Cgb%7CEFC37093%2E1%7C.for.40629-42867.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.40629-42867.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.40629-42867.gi%7C284083389%7Cgb%7CEFC37093%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088661%7Cgb%7CEFC42323%2E1%7C.for.42233-43607.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.42233-43607.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.42233-43607.gi%7C284088661%7Cgb%7CEFC42323%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084450%7Cgb%7CEFC38143%2E1%7C.for.44718-47219.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.44718-47219.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.44718-47219.gi%7C284084450%7Cgb%7CEFC38143%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087263%7Cgb%7CEFC40934%2E1%7C.for.44718-47219.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.44718-47219.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.44718-47219.gi%7C284087263%7Cgb%7CEFC40934%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094712%7Cgb%7CEFC48345%2E1%7C.for.46566-48732.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.46566-48732.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.46566-48732.gi%7C284094712%7Cgb%7CEFC48345%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C260677510%7Cgb%7CACX47992%2E1%7C.for.46575-48732.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.46575-48732.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.46575-48732.gi%7C260677510%7Cgb%7CACX47992%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C42795417%7Cgb%7CAAS46035%2E1%7C.for.49226-51258.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.49226-51258.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.49226-51258.gi%7C42795417%7Cgb%7CAAS46035%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092604%7Cgb%7CEFC46245%2E1%7C.for.48980-51279.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.48980-51279.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.48980-51279.gi%7C284092604%7Cgb%7CEFC46245%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091110%7Cgb%7CEFC44758%2E1%7C.for.54320-55659.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.54320-55659.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.54320-55659.gi%7C284091110%7Cgb%7CEFC44758%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087591%7Cgb%7CEFC41260%2E1%7C.for.61695-63855.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.61695-63855.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.61695-63855.gi%7C284087591%7Cgb%7CEFC41260%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090807%7Cgb%7CEFC44457%2E1%7C.for.61689-64185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.61689-64185.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.61689-64185.gi%7C284090807%7Cgb%7CEFC44457%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087960%7Cgb%7CEFC41626%2E1%7C.for.61695-64170.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.61695-64170.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.61695-64170.gi%7C284087960%7Cgb%7CEFC41626%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091709%7Cgb%7CEFC45354%2E1%7C.for.61689-64167.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.61689-64167.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.61689-64167.gi%7C284091709%7Cgb%7CEFC45354%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086829%7Cgb%7CEFC40503%2E1%7C.for.67184-69094.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.67184-69094.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.67184-69094.gi%7C284086829%7Cgb%7CEFC40503%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:10 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 total clusters:10 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:10 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 total clusters:22 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:22 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.2074-3158.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.2074-3158.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.2074-3158.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.27496-28925.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.27496-28925.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.27496-28925.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.31007-31856.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.31007-31856.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.31007-31856.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.33344-34338.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.33344-34338.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.33344-34338.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.39257-40208.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.39257-40208.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.39257-40208.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.40828-43407.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.40828-43407.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.40828-43407.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.44917-48532.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.44917-48532.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.44917-48532.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.53095-53981.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.53095-53981.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.53095-53981.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.67383-68894.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.67383-68894.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.67383-68894.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.81649-82410.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.81649-82410.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.81649-82410.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.1608-2246.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.1608-2246.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.1608-2246.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.2940-8342.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.2940-8342.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.2940-8342.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.11022-12898.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.11022-12898.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.11022-12898.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.12912-14308.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.12912-14308.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.12912-14308.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.16198-17982.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.16198-17982.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.16198-17982.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.21437-22714.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.21437-22714.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.21437-22714.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.25739-27800.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.25739-27800.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.25739-27800.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.32089-33069.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.32089-33069.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.32089-33069.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.39063-40876.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.39063-40876.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.39063-40876.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.43380-44448.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.43380-44448.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.43380-44448.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.49179-51079.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.49179-51079.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.49179-51079.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.53834-54791.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.53834-54791.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.53834-54791.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.57293-57840.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.57293-57840.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.57293-57840.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.59374-60314.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.59374-60314.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.59374-60314.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.61888-63967.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.61888-63967.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.61888-63967.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.87653-88944.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.87653-88944.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.87653-88944.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C18 Length: 97524 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C18.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C18.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig956%7Cist1.for.1393-3113.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.1393-3113.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.1393-3113.120301b_Contig956%7Cist1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c207%7Ccyclophilin.for.2372-3908.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.2372-3908.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.2372-3908.Ar_EST_120301b_c207%7Ccyclophilin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9680%7Csialate.for.2871-4336.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.2871-4336.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.2871-4336.Ar_EST_120301b_c9680%7Csialate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11909%7Cpredicted.for.10205-11801.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.10205-11801.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.10205-11801.Ar_EST_120301b_c11909%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17317%7Chypothetical.for.12208-13469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.12208-13469.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.12208-13469.Ar_EST_120301b_c17317%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1848%7Cserine.for.13277-15049.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.13277-15049.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.13277-15049.Ar_EST_120301b_c1848%7Cserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12449%7Cpeptidase.for.13848-14943.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.13848-14943.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.13848-14943.Ar_EST_120301b_c12449%7Cpeptidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14570%7Cserine.for.13254-14383.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.13254-14383.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.13254-14383.Ar_EST_120301b_c14570%7Cserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13149%7Csodium%3Asolute.for.14314-15606.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.14314-15606.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.14314-15606.Ar_EST_120301b_c13149%7Csodium%3Asolute.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13340%7Cjle00002651.for.17297-18594.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.17297-18594.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.17297-18594.Ar_EST_120301b_c13340%7Cjle00002651.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3112%7Cprotein.for.21072-23154.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.21072-23154.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.21072-23154.Ar_EST_120301b_c3112%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4384%7Casparaginyl-trna.for.23099-25361.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.23099-25361.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.23099-25361.Ar_EST_120301b_rep_c4384%7Casparaginyl-trna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6569%7Casparaginyl-trna.for.23655-25076.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.23655-25076.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.23655-25076.Ar_EST_120301b_rep_c6569%7Casparaginyl-trna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19437%7Cphosphatidylserine.for.25508-26638.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.25508-26638.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.25508-26638.Ar_EST_120301b_c19437%7Cphosphatidylserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7907%7Cphosphatidylserine.for.25067-26654.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.25067-26654.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.25067-26654.Ar_EST_120301b_c7907%7Cphosphatidylserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19136%7Cphosphatidylserine.for.25501-26838.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.25501-26838.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.25501-26838.Ar_EST_120301b_c19136%7Cphosphatidylserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12567%7Cbp914876.for.26854-28102.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.26854-28102.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.26854-28102.Ar_EST_120301b_c12567%7Cbp914876.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c474%7Crasgef.for.26750-28162.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.26750-28162.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.26750-28162.Ar_EST_120301b_c474%7Crasgef.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10283%7Crasgef.for.27456-29229.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.27456-29229.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.27456-29229.Ar_EST_120301b_c10283%7Crasgef.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1820%7Crasgef.for.28529-29887.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.28529-29887.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.28529-29887.Ar_EST_120301b_c1820%7Crasgef.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1034%7C6-phosphogluconate.for.31048-33315.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31048-33315.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31048-33315.120301b_Contig1034%7C6-phosphogluconate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14395%7Cacrasis.for.31744-32774.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31744-32774.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31744-32774.Ar_EST_120301b_c14395%7Cacrasis.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14855%7C6-phosphogluconate.for.31784-32819.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31784-32819.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31784-32819.Ar_EST_120301b_rep_c14855%7C6-phosphogluconate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig595%7Cprefoldin.for.32824-34284.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.32824-34284.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.32824-34284.120301b_Contig595%7Cprefoldin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9174%7Cig.for.38880-40636.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.38880-40636.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.38880-40636.Ar_EST_120301b_c9174%7Cig.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15067%7C6-phosphogluconolactonase.for.42321-43789.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.42321-43789.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.42321-43789.Ar_EST_120301b_c15067%7C6-phosphogluconolactonase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1603%7Coxidoreductase.for.43514-45581.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.43514-45581.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.43514-45581.Ar_EST_120301b_c1603%7Coxidoreductase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5690%7Czinc-binding.for.43646-45239.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.43646-45239.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.43646-45239.Ar_EST_120301b_rep_c5690%7Czinc-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10070%7Cprotein.for.44178-45537.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.44178-45537.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.44178-45537.Ar_EST_120301b_rep_c10070%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17326%7Cforkhead.for.47118-48572.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.47118-48572.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.47118-48572.Ar_EST_120301b_c17326%7Cforkhead.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18313%7Csh3-domain.for.48128-49291.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.48128-49291.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.48128-49291.Ar_EST_120301b_c18313%7Csh3-domain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15882%7Cprotein.for.48571-49859.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.48571-49859.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.48571-49859.Ar_EST_120301b_c15882%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9855%7Cunq88-.for.49262-51251.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.49262-51251.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.49262-51251.Ar_EST_120301b_rep_c9855%7Cunq88-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5404%7Cunq88-.for.49663-51470.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.49663-51470.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.49663-51470.Ar_EST_120301b_rep_c5404%7Cunq88-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14063%7Cvir_sct982_g01_jp7_4g1_002.for.51685-52680.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.51685-52680.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.51685-52680.Ar_EST_120301b_c14063%7Cvir_sct982_g01_jp7_4g1_002.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15610%7Cautophagy.for.52013-53304.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.52013-53304.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.52013-53304.Ar_EST_120301b_c15610%7Cautophagy.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9411%7C%28%2B%29-neomenthol.for.55320-56583.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.55320-56583.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.55320-56583.Ar_EST_120301b_c9411%7C%28%2B%29-neomenthol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11031%7Cdinucleoside.for.56198-57706.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.56198-57706.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.56198-57706.Ar_EST_120301b_c11031%7Cdinucleoside.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15310%7Cprotein.for.57832-59418.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.57832-59418.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.57832-59418.Ar_EST_120301b_c15310%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15%7Chypothetical.for.59021-60766.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.59021-60766.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.59021-60766.Ar_EST_120301b_c15%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11961%7Cabc.for.59276-60425.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.59276-60425.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.59276-60425.Ar_EST_120301b_rep_c11961%7Cabc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c342%7Ceukaryotic.for.60117-62820.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.60117-62820.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.60117-62820.Ar_EST_120301b_c342%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6325%7Ceukaryotic.for.60122-62377.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.60122-62377.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.60122-62377.Ar_EST_120301b_rep_c6325%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14038%7Ceukaryotic.for.60334-61979.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.60334-61979.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.60334-61979.Ar_EST_120301b_rep_c14038%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10838%7Cpredicted.for.63235-64205.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.63235-64205.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.63235-64205.Ar_EST_120301b_c10838%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15959%7Cnon-transporter.for.63573-64952.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.63573-64952.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.63573-64952.Ar_EST_120301b_c15959%7Cnon-transporter.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1121%7Cnitrate.for.65272-66840.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.65272-66840.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.65272-66840.Ar_EST_120301b_c1121%7Cnitrate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10306%7Cnitrate.for.64797-66084.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.64797-66084.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.64797-66084.Ar_EST_120301b_c10306%7Cnitrate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7785%7Cnitrate.for.66081-68119.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.66081-68119.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.66081-68119.Ar_EST_120301b_c7785%7Cnitrate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16968%7Cguanylate.for.70042-71135.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.70042-71135.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.70042-71135.Ar_EST_120301b_c16968%7Cguanylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3296%7Ctranscription.for.72211-73510.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.72211-73510.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.72211-73510.Ar_EST_120301b_c3296%7Ctranscription.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12094%7Cpredicted.for.72879-74208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.72879-74208.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.72879-74208.Ar_EST_120301b_c12094%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16226%7Cprotein.for.73862-75151.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.73862-75151.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.73862-75151.Ar_EST_120301b_c16226%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3632%7Creceptor-interacting.for.74428-76656.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.74428-76656.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.74428-76656.Ar_EST_120301b_c3632%7Creceptor-interacting.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4371%7Ctata-binding.for.79865-81399.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.79865-81399.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.79865-81399.Ar_EST_120301b_rep_c4371%7Ctata-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1339%7Cupf0577.for.81265-84505.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.81265-84505.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.81265-84505.120301b_Contig1339%7Cupf0577.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13539%7C---NA---.for.89697-91031.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.89697-91031.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.89697-91031.Ar_EST_120301b_c13539%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18466%7Cchaetosphaeridium.for.90173-91792.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.90173-91792.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.90173-91792.Ar_EST_120301b_c18466%7Cchaetosphaeridium.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17951%7Cclp.for.91022-92635.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.91022-92635.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.91022-92635.Ar_EST_120301b_c17951%7Cclp.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19464%7Cbf-sam-tir-like.for.96236-97524.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.96236-97524.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.96236-97524.Ar_EST_120301b_c19464%7Cbf-sam-tir-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1663%7Csterile.for.96052-97524.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.96052-97524.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.96052-97524.Ar_EST_120301b_c1663%7Csterile.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:16 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:10 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:22 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:12 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:17 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:17 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:22 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:20 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:14 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:14 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095252%7Cgb%7CEFC48883%2E1%7C.for.8997-10627.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.8997-10627.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.8997-10627.gi%7C284095252%7Cgb%7CEFC48883%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094339%7Cgb%7CEFC47973%2E1%7C.for.8937-10627.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.8937-10627.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.8937-10627.gi%7C284094339%7Cgb%7CEFC47973%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082802%7Cgb%7CEFC36513%2E1%7C.for.8949-10624.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.8949-10624.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.8949-10624.gi%7C284082802%7Cgb%7CEFC36513%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086622%7Cgb%7CEFC40297%2E1%7C.for.9150-10633.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.9150-10633.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.9150-10633.gi%7C284086622%7Cgb%7CEFC40297%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090173%7Cgb%7CEFC43826%2E1%7C.for.8919-10624.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.8919-10624.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.8919-10624.gi%7C284090173%7Cgb%7CEFC43826%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094933%7Cgb%7CEFC48565%2E1%7C.for.12954-15104.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.12954-15104.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.12954-15104.gi%7C284094933%7Cgb%7CEFC48565%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090440%7Cgb%7CEFC44092%2E1%7C.for.21395-23692.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.21395-23692.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.21395-23692.gi%7C284090440%7Cgb%7CEFC44092%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095286%7Cgb%7CEFC48917%2E1%7C.for.21485-23695.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.21485-23695.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.21485-23695.gi%7C284095286%7Cgb%7CEFC48917%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095446%7Cgb%7CEFC49077%2E1%7C.for.21485-23695.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.21485-23695.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.21485-23695.gi%7C284095446%7Cgb%7CEFC49077%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092248%7Cgb%7CEFC45891%2E1%7C.for.23192-25461.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.23192-25461.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.23192-25461.gi%7C284092248%7Cgb%7CEFC45891%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092767%7Cgb%7CEFC46408%2E1%7C.for.28190-30464.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.28190-30464.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.28190-30464.gi%7C284092767%7Cgb%7CEFC46408%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089590%7Cgb%7CEFC43247%2E1%7C.for.28208-30458.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.28208-30458.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.28208-30458.gi%7C284089590%7Cgb%7CEFC43247%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089589%7Cgb%7CEFC43246%2E1%7C.for.28208-30458.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.28208-30458.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.28208-30458.gi%7C284089589%7Cgb%7CEFC43246%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095088%7Cgb%7CEFC48720%2E1%7C.for.31080-33301.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31080-33301.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31080-33301.gi%7C284095088%7Cgb%7CEFC48720%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C18644664%7Cgb%7CAAL76318%2E1%7CAF394508_1.for.31116-33244.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31116-33244.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31116-33244.gi%7C18644664%7Cgb%7CAAL76318%2E1%7CAF394508_1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092926%7Cgb%7CEFC46566%2E1%7C.for.33923-35247.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.33923-35247.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.33923-35247.gi%7C284092926%7Cgb%7CEFC46566%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084413%7Cgb%7CEFC38106%2E1%7C.for.45120-46202.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.45120-46202.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.45120-46202.gi%7C284084413%7Cgb%7CEFC38106%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093891%7Cgb%7CEFC47527%2E1%7C.for.56356-57467.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.56356-57467.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.56356-57467.gi%7C284093891%7Cgb%7CEFC47527%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090358%7Cgb%7CEFC44010%2E1%7C.for.62297-65300.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.62297-65300.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.62297-65300.gi%7C284090358%7Cgb%7CEFC44010%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097074%7Cgb%7CEFC50701%2E1%7C.for.65494-66551.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.65494-66551.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.65494-66551.gi%7C284097074%7Cgb%7CEFC50701%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095485%7Cgb%7CEFC49116%2E1%7C.for.70054-71453.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.70054-71453.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.70054-71453.gi%7C284095485%7Cgb%7CEFC49116%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084029%7Cgb%7CEFC37726%2E1%7C.for.73767-75085.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.73767-75085.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.73767-75085.gi%7C284084029%7Cgb%7CEFC37726%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090329%7Cgb%7CEFC43981%2E1%7C.for.75286-76406.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.75286-76406.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.75286-76406.gi%7C284090329%7Cgb%7CEFC43981%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093550%7Cgb%7CEFC47187%2E1%7C.for.79969-81246.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.79969-81246.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.79969-81246.gi%7C284093550%7Cgb%7CEFC47187%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091548%7Cgb%7CEFC45194%2E1%7C.for.93315-94324.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.93315-94324.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.93315-94324.gi%7C284091548%7Cgb%7CEFC45194%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:14 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:12 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.1592-2913.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.1592-2913.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.1592-2913.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.9118-10433.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.9118-10433.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.9118-10433.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.12407-14904.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.12407-14904.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.12407-14904.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.17496-18394.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.17496-18394.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.17496-18394.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.21271-25261.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.21271-25261.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.21271-25261.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.25266-26638.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.25266-26638.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.25266-26638.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.26949-29687.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.26949-29687.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.26949-29687.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.31279-34084.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.31279-34084.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.31279-34084.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.34122-35047.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.34122-35047.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.34122-35047.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.39079-40436.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.39079-40436.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.39079-40436.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.42520-43589.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.42520-43589.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.42520-43589.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.45319-46002.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.45319-46002.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.45319-46002.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.47317-51270.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.47317-51270.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.47317-51270.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.58005-59218.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.58005-59218.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.58005-59218.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.59220-60582.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.59220-60582.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.59220-60582.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.73060-74951.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.73060-74951.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.73060-74951.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.81464-84305.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.81464-84305.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.81464-84305.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.3070-4136.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.3070-4136.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.3070-4136.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.10404-11601.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.10404-11601.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.10404-11601.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.14508-15406.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.14508-15406.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.14508-15406.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.43713-45381.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.43713-45381.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.43713-45381.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.52212-53104.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.52212-53104.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.52212-53104.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.55519-56383.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.55519-56383.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.55519-56383.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.56397-57506.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.56397-57506.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.56397-57506.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.60316-67919.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.60316-67919.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.60316-67919.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.70101-71253.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.70101-71253.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.70101-71253.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.74627-76479.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.74627-76479.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.74627-76479.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.80064-81199.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.80064-81199.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.80064-81199.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.89896-91592.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.89896-91592.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.89896-91592.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.93514-94124.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.93514-94124.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.93514-94124.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.96251-97449.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.96251-97449.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.96251-97449.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C19 Length: 217569 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:2 current j:0 j_size:2 current j:1 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C19.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C19.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:13 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:17 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:8 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:20 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:10 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:19 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:15 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:11 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:15 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:19 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18086%7Cpredicted.for.1806-3007.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.1806-3007.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.1806-3007.Ar_EST_120301b_c18086%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17569%7Cme1-0071p-a159-f12-.for.4726-5785.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.4726-5785.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.4726-5785.Ar_EST_120301b_c17569%7Cme1-0071p-a159-f12-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14143%7Cpredicted.for.5350-6841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.5350-6841.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.5350-6841.Ar_EST_120301b_c14143%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8188%7Chuntingtin.for.6217-7987.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.6217-7987.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.6217-7987.Ar_EST_120301b_c8188%7Chuntingtin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7996%7Cglyceraldehyde-3-phosphate.for.7708-8784.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.7708-8784.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.7708-8784.Ar_EST_120301b_rep_c7996%7Cglyceraldehyde-3-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5073%7Cpra1.for.8169-9759.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.8169-9759.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.8169-9759.Ar_EST_120301b_rep_c5073%7Cpra1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5868%7Cpra1.for.8338-9754.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.8338-9754.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.8338-9754.Ar_EST_120301b_rep_c5868%7Cpra1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c971%7Cprotein.for.10089-11433.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.10089-11433.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.10089-11433.Ar_EST_120301b_c971%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17756%7Cdna.for.14180-15515.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.14180-15515.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.14180-15515.Ar_EST_120301b_c17756%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6314%7Cbi146m05.for.20010-21370.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.20010-21370.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.20010-21370.Ar_EST_120301b_rep_c6314%7Cbi146m05.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18921%7C---NA---.for.20166-21202.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.20166-21202.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.20166-21202.Ar_EST_120301b_rep_c18921%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19041%7C---NA---.for.20072-21110.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.20072-21110.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.20072-21110.Ar_EST_120301b_rep_c19041%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1735%7Cdna.for.19510-21674.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.19510-21674.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.19510-21674.Ar_EST_120301b_c1735%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13965%7Ctryptophan.for.20308-21500.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.20308-21500.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.20308-21500.Ar_EST_120301b_rep_c13965%7Ctryptophan.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4463%7C---NA---.for.21337-22786.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.21337-22786.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.21337-22786.Ar_EST_120301b_rep_c4463%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11964%7Chistone.for.26141-27552.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.26141-27552.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.26141-27552.Ar_EST_120301b_c11964%7Chistone.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14853%7Cpredicted.for.25824-26912.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.25824-26912.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.25824-26912.Ar_EST_120301b_c14853%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c725%7Cprotein.for.25790-27759.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.25790-27759.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.25790-27759.Ar_EST_120301b_c725%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14261%7C---NA---.for.27658-28561.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.27658-28561.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.27658-28561.Ar_EST_120301b_c14261%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11200%7Cperoxisome.for.28574-30060.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.28574-30060.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.28574-30060.Ar_EST_120301b_c11200%7Cperoxisome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16384%7C---NA---.for.28150-29386.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.28150-29386.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.28150-29386.Ar_EST_120301b_c16384%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16810%7Cperoxisomal.for.29540-30925.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.29540-30925.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.29540-30925.Ar_EST_120301b_c16810%7Cperoxisomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1284%7Cshwachman-bodian-diamond.for.30724-31913.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.30724-31913.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.30724-31913.Ar_EST_120301b_c1284%7Cshwachman-bodian-diamond.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2405%7Crna-associated.for.30286-31904.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.30286-31904.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.30286-31904.Ar_EST_120301b_c2405%7Crna-associated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7523%7Cshwachman-bodian-diamond.for.30411-31683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.30411-31683.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.30411-31683.Ar_EST_120301b_rep_c7523%7Cshwachman-bodian-diamond.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c858%7Csuccinate-.for.35387-37427.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.35387-37427.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.35387-37427.Ar_EST_120301b_c858%7Csuccinate-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14975%7Cgc-rich.for.36799-38057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.36799-38057.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.36799-38057.Ar_EST_120301b_c14975%7Cgc-rich.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17619%7Cgc-rich.for.37259-38400.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.37259-38400.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.37259-38400.Ar_EST_120301b_c17619%7Cgc-rich.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11908%7Cwd40.for.37236-38338.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.37236-38338.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.37236-38338.Ar_EST_120301b_c11908%7Cwd40.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9665%7Ctyrosyl-trna.for.40531-41818.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.40531-41818.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.40531-41818.Ar_EST_120301b_c9665%7Ctyrosyl-trna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15790%7Cadenylyltransferase.for.41871-43101.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.41871-43101.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.41871-43101.Ar_EST_120301b_c15790%7Cadenylyltransferase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18381%7C2-methylisocitrate.for.43546-44773.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.43546-44773.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.43546-44773.Ar_EST_120301b_c18381%7C2-methylisocitrate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1141%7Cmethylisocitrate.for.43547-45200.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.43547-45200.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.43547-45200.Ar_EST_120301b_c1141%7Cmethylisocitrate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5326%7Ccazn.for.46335-47659.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.46335-47659.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.46335-47659.Ar_EST_120301b_rep_c5326%7Ccazn.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16278%7Chh_ystg_54f02_t3.for.48455-49896.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.48455-49896.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.48455-49896.Ar_EST_120301b_c16278%7Chh_ystg_54f02_t3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3313%7Cdc896819.for.47270-49327.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.47270-49327.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.47270-49327.Ar_EST_120301b_c3313%7Cdc896819.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15481%7Cnadh-dependent.for.55949-56970.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.55949-56970.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.55949-56970.Ar_EST_120301b_c15481%7Cnadh-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6369%7Ccathepsin.for.56950-58951.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.56950-58951.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.56950-58951.Ar_EST_120301b_rep_c6369%7Ccathepsin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6703%7Ccathepsin.for.57416-58951.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57416-58951.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57416-58951.Ar_EST_120301b_rep_c6703%7Ccathepsin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5635%7Ccathepsin.for.57081-58956.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57081-58956.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57081-58956.Ar_EST_120301b_rep_c5635%7Ccathepsin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15567%7Ccathepsin.for.57591-58542.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57591-58542.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57591-58542.Ar_EST_120301b_rep_c15567%7Ccathepsin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18626%7Cschistosoma.for.57553-58871.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57553-58871.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57553-58871.Ar_EST_120301b_rep_c18626%7Cschistosoma.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4114%7Ccathepsin.for.57073-58967.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57073-58967.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57073-58967.Ar_EST_120301b_rep_c4114%7Ccathepsin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12361%7Cdna.for.58245-59385.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.58245-59385.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.58245-59385.Ar_EST_120301b_c12361%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11199%7Centh.for.58624-60297.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.58624-60297.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.58624-60297.Ar_EST_120301b_c11199%7Centh.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2376%7Cregulator.for.60776-62236.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.60776-62236.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.60776-62236.Ar_EST_120301b_c2376%7Cregulator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c291%7Cregulator.for.60402-63026.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.60402-63026.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.60402-63026.Ar_EST_120301b_c291%7Cregulator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14264%7Cdpo07-eadult-whole-untreated-unnorm.for.68959-70300.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.68959-70300.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.68959-70300.Ar_EST_120301b_c14264%7Cdpo07-eadult-whole-untreated-unnorm.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1316%7Cpeptide.for.70993-72991.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.70993-72991.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.70993-72991.Ar_EST_120301b_c1316%7Cpeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8577%7Cpeptide.for.70981-72404.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.70981-72404.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.70981-72404.Ar_EST_120301b_c8577%7Cpeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14052%7Cadenosylhomocysteinase.for.74276-75452.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.74276-75452.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.74276-75452.Ar_EST_120301b_rep_c14052%7Cadenosylhomocysteinase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4278%7Cdihydrolipoamide.for.73633-75728.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.73633-75728.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.73633-75728.Ar_EST_120301b_rep_c4278%7Cdihydrolipoamide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12796%7Csestrin-like.for.75023-76366.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.75023-76366.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.75023-76366.Ar_EST_120301b_c12796%7Csestrin-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14013%7Cenvelope.for.75631-76655.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.75631-76655.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.75631-76655.Ar_EST_120301b_c14013%7Cenvelope.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c294%7Csestrin-like.for.75776-77286.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.75776-77286.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.75776-77286.Ar_EST_120301b_c294%7Csestrin-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10956%7C---NA---.for.77886-79247.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.77886-79247.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.77886-79247.Ar_EST_120301b_c10956%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11463%7Chypothetical.for.80337-81687.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.80337-81687.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.80337-81687.Ar_EST_120301b_c11463%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9893%7Cpq-loop.for.81376-82839.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.81376-82839.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.81376-82839.Ar_EST_120301b_c9893%7Cpq-loop.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16844%7Chypothetical.for.93623-95050.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.93623-95050.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.93623-95050.Ar_EST_120301b_c16844%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6574%7Cprotein.for.94548-96085.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.94548-96085.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.94548-96085.Ar_EST_120301b_rep_c6574%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12988%7Cmembrane.for.96666-97923.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.96666-97923.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.96666-97923.Ar_EST_120301b_c12988%7Cmembrane.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1227%7Clysophospholipid.for.96104-98415.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.96104-98415.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.96104-98415.Ar_EST_120301b_c1227%7Clysophospholipid.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15198%7Ct-complex.for.96435-97629.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.96435-97629.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.96435-97629.Ar_EST_120301b_rep_c15198%7Ct-complex.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c821%7Csco.for.98203-99525.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.98203-99525.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.98203-99525.Ar_EST_120301b_c821%7Csco.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16830%7C---NA---.for.101216-102554.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.101216-102554.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.101216-102554.Ar_EST_120301b_c16830%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c765%7Cstart.for.100984-102358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.100984-102358.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.100984-102358.Ar_EST_120301b_c765%7Cstart.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1011%7Cactin.for.102913-104263.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102913-104263.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102913-104263.120301b_Contig1011%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7459%7Cubiquitin.for.102549-103922.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102549-103922.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102549-103922.Ar_EST_120301b_rep_c7459%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7281%7Cactin.for.102559-103719.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102559-103719.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102559-103719.Ar_EST_120301b_rep_c7281%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19974%7Cbeta.for.102516-103491.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102516-103491.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102516-103491.Ar_EST_120301b_rep_c19974%7Cbeta.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16282%7Cfq664523.for.102847-103750.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102847-103750.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102847-103750.Ar_EST_120301b_c16282%7Cfq664523.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig782%7Cactin.for.102545-104472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104472.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104472.120301b_Contig782%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4045%7Cactin.for.102541-103983.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102541-103983.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102541-103983.Ar_EST_120301b_rep_c4045%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10438%7Cactin.for.103088-104291.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103088-104291.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103088-104291.Ar_EST_120301b_c10438%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7317%7Cbeta.for.102533-103683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102533-103683.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102533-103683.Ar_EST_120301b_rep_c7317%7Cbeta.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6795%7Cbeta.for.102544-103668.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102544-103668.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102544-103668.Ar_EST_120301b_rep_c6795%7Cbeta.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig573%7Cactin.for.102881-104288.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102881-104288.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102881-104288.120301b_Contig573%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5842%7Cactin.for.102638-104158.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102638-104158.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102638-104158.Ar_EST_120301b_rep_c5842%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1143%7Cactin.for.102554-103861.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-103861.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-103861.120301b_Contig1143%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7283%7Cbeta-actin.for.102622-103856.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102622-103856.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102622-103856.Ar_EST_120301b_rep_c7283%7Cbeta-actin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20286%7Cactin.for.103194-104293.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103194-104293.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103194-104293.Ar_EST_120301b_rep_c20286%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6785%7Cactin.for.103351-104481.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103351-104481.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103351-104481.Ar_EST_120301b_rep_c6785%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8932%7Cactin.for.102900-104033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102900-104033.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102900-104033.Ar_EST_120301b_c8932%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6177%7Cactin.for.102541-104472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102541-104472.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102541-104472.Ar_EST_120301b_rep_c6177%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1364%7Cactin.for.103165-104442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103165-104442.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103165-104442.120301b_Contig1364%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10740%7Cactin.for.102897-104034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102897-104034.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102897-104034.Ar_EST_120301b_rep_c10740%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7052%7Cactin.for.102980-104144.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102980-104144.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102980-104144.Ar_EST_120301b_rep_c7052%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16711%7Cactin-like.for.103455-104490.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103455-104490.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103455-104490.Ar_EST_120301b_rep_c16711%7Cactin-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5397%7Cbeta.for.102544-103526.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102544-103526.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102544-103526.Ar_EST_120301b_rep_c5397%7Cbeta.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4024%7Cactin.for.102516-104514.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102516-104514.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102516-104514.Ar_EST_120301b_rep_c4024%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6690%7Cactin.for.103188-104366.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103188-104366.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103188-104366.Ar_EST_120301b_rep_c6690%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7250%7Cbeta-actin.for.102623-103775.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102623-103775.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102623-103775.Ar_EST_120301b_rep_c7250%7Cbeta-actin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7417%7Cactin.for.102573-103644.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102573-103644.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102573-103644.Ar_EST_120301b_rep_c7417%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4576%7Cactin.for.102713-104514.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102713-104514.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102713-104514.Ar_EST_120301b_rep_c4576%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6565%7Cactin.for.103281-104486.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103281-104486.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103281-104486.Ar_EST_120301b_rep_c6565%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11279%7Cactin.for.103111-104199.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103111-104199.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103111-104199.Ar_EST_120301b_c11279%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1814%7Cactin.for.102544-104002.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102544-104002.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102544-104002.Ar_EST_120301b_c1814%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7237%7Cubiquitin.for.102545-103765.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-103765.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-103765.Ar_EST_120301b_rep_c7237%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6092%7Cbeta.for.102545-103710.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-103710.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-103710.Ar_EST_120301b_rep_c6092%7Cbeta.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20475%7Cbeta.for.102545-103679.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-103679.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-103679.Ar_EST_120301b_rep_c20475%7Cbeta.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6612%7Cbeta-actin.for.102769-103850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102769-103850.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102769-103850.Ar_EST_120301b_rep_c6612%7Cbeta-actin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4013%7Cactin.for.102545-104438.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104438.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104438.Ar_EST_120301b_rep_c4013%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7649%7Cactin.for.102933-104177.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102933-104177.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102933-104177.Ar_EST_120301b_rep_c7649%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5328%7Cactin.for.102896-103925.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102896-103925.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102896-103925.Ar_EST_120301b_rep_c5328%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig519%7Cactin.for.102671-104472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102671-104472.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102671-104472.120301b_Contig519%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7261%7Cactin.for.102569-103763.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102569-103763.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102569-103763.Ar_EST_120301b_rep_c7261%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7574%7Cactin.for.102927-104188.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102927-104188.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102927-104188.Ar_EST_120301b_rep_c7574%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14154%7Cactin.for.103272-104375.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103272-104375.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103272-104375.Ar_EST_120301b_rep_c14154%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16255%7Cactin.for.103218-104391.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103218-104391.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103218-104391.Ar_EST_120301b_rep_c16255%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20026%7Cactin.for.103107-104141.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103107-104141.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103107-104141.Ar_EST_120301b_c20026%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5899%7Cactin.for.102883-103950.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102883-103950.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102883-103950.Ar_EST_120301b_rep_c5899%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5955%7Cbeta-actin.for.103505-104472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103505-104472.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103505-104472.Ar_EST_120301b_rep_c5955%7Cbeta-actin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7229%7CActin.for.102557-103487.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102557-103487.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102557-103487.Ar_EST_120301b_rep_c7229%7CActin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6804%7Cprotein.for.105841-107575.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105841-107575.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105841-107575.Ar_EST_120301b_rep_c6804%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15007%7Czinc.for.108314-109528.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.108314-109528.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.108314-109528.Ar_EST_120301b_c15007%7Czinc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13370%7Cau_cv_est_008a_b02.for.109246-110294.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.109246-110294.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.109246-110294.Ar_EST_120301b_c13370%7Cau_cv_est_008a_b02.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8594%7C---NA---.for.111592-113431.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.111592-113431.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.111592-113431.Ar_EST_120301b_c8594%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16528%7C---NA---.for.113739-114926.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.113739-114926.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.113739-114926.Ar_EST_120301b_c16528%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8764%7Cpseudouridine.for.127906-129892.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.127906-129892.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.127906-129892.Ar_EST_120301b_c8764%7Cpseudouridine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11591%7Chistone.for.129444-130461.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.129444-130461.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.129444-130461.Ar_EST_120301b_rep_c11591%7Chistone.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2442%7Chistone.for.129143-130465.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.129143-130465.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.129143-130465.Ar_EST_120301b_c2442%7Chistone.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11107%7Ckynureninase.for.132897-134505.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.132897-134505.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.132897-134505.Ar_EST_120301b_c11107%7Ckynureninase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1312%7Ckynureninase.for.133454-134779.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.133454-134779.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.133454-134779.Ar_EST_120301b_c1312%7Ckynureninase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18501%7Cepoxide.for.138372-139795.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.138372-139795.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.138372-139795.Ar_EST_120301b_c18501%7Cepoxide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6221%7Cvon.for.139858-141383.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139858-141383.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139858-141383.Ar_EST_120301b_rep_c6221%7Cvon.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6322%7Cvon.for.139293-140703.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139293-140703.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139293-140703.Ar_EST_120301b_rep_c6322%7Cvon.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5569%7Cinter-alpha-trypsin.for.139281-141395.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139281-141395.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139281-141395.Ar_EST_120301b_rep_c5569%7Cinter-alpha-trypsin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6355%7Cgdp-l-fucose.for.140881-142708.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.140881-142708.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.140881-142708.Ar_EST_120301b_rep_c6355%7Cgdp-l-fucose.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19416%7Cgdp-l-fucose.for.141007-142074.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.141007-142074.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.141007-142074.Ar_EST_120301b_rep_c19416%7Cgdp-l-fucose.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4330%7Cgdp-l-fucose.for.141132-142705.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.141132-142705.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.141132-142705.Ar_EST_120301b_rep_c4330%7Cgdp-l-fucose.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15292%7Cgdp-l-fucose.for.141386-142656.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.141386-142656.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.141386-142656.Ar_EST_120301b_rep_c15292%7Cgdp-l-fucose.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8424%7Ctissue.for.140951-142356.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.140951-142356.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.140951-142356.Ar_EST_120301b_rep_c8424%7Ctissue.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12996%7Cgdp-l-fucose.for.141224-142130.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.141224-142130.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.141224-142130.Ar_EST_120301b_rep_c12996%7Cgdp-l-fucose.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14212%7Caminoglycoside.for.142125-143497.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.142125-143497.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.142125-143497.Ar_EST_120301b_c14212%7Caminoglycoside.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17261%7Cthermophilic.for.143186-144667.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.143186-144667.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.143186-144667.Ar_EST_120301b_c17261%7Cthermophilic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16136%7Cprobable.for.144243-145472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.144243-145472.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.144243-145472.Ar_EST_120301b_c16136%7Cprobable.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9764%7Cregulator.for.151181-152872.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.151181-152872.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.151181-152872.Ar_EST_120301b_rep_c9764%7Cregulator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7187%7Cregulator.for.151327-153118.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.151327-153118.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.151327-153118.Ar_EST_120301b_rep_c7187%7Cregulator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c999%7Creplication.for.161477-162850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.161477-162850.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.161477-162850.Ar_EST_120301b_c999%7Creplication.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1128%7Csoluble.for.164149-165867.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.164149-165867.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.164149-165867.120301b_Contig1128%7Csoluble.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8629%7Cgq028.for.166297-167880.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.166297-167880.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.166297-167880.Ar_EST_120301b_c8629%7Cgq028.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6086%7C60s.for.167832-169064.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167832-169064.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167832-169064.Ar_EST_120301b_rep_c6086%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig123%7C60s.for.167786-169266.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167786-169266.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167786-169266.120301b_Contig123%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18572%7Cribosomal.for.168035-169064.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.168035-169064.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.168035-169064.Ar_EST_120301b_rep_c18572%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6911%7Credoxin.for.167155-168586.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167155-168586.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167155-168586.Ar_EST_120301b_rep_c6911%7Credoxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20338%7C60s.for.167804-168909.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167804-168909.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167804-168909.Ar_EST_120301b_rep_c20338%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20172%7C60s.for.167803-169031.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167803-169031.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167803-169031.Ar_EST_120301b_rep_c20172%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11878%7C---NA---.for.168799-169695.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.168799-169695.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.168799-169695.Ar_EST_120301b_c11878%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c592%7Cglutathione-dependent.for.172691-174063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.172691-174063.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.172691-174063.Ar_EST_120301b_c592%7Cglutathione-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15602%7Cwd-40.for.174212-175463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.174212-175463.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.174212-175463.Ar_EST_120301b_c15602%7Cwd-40.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5247%7Ccawy.for.175255-177616.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.175255-177616.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.175255-177616.Ar_EST_120301b_rep_c5247%7Ccawy.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19643%7Cmetc577tf.for.175646-176943.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.175646-176943.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.175646-176943.Ar_EST_120301b_rep_c19643%7Cmetc577tf.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5668%7Cbeta-propeller.for.175225-177450.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.175225-177450.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.175225-177450.Ar_EST_120301b_rep_c5668%7Cbeta-propeller.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10167%7Chypothetical.for.175909-177339.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.175909-177339.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.175909-177339.Ar_EST_120301b_rep_c10167%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18312%7Cpuncp79tv.for.177167-178457.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.177167-178457.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.177167-178457.Ar_EST_120301b_c18312%7Cpuncp79tv.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3490%7Ccytochrome.for.178105-180411.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.178105-180411.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.178105-180411.Ar_EST_120301b_c3490%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig438%7Csilent.for.180034-181671.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.180034-181671.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.180034-181671.120301b_Contig438%7Csilent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13291%7Cmagnesium.for.181514-182950.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.181514-182950.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.181514-182950.Ar_EST_120301b_c13291%7Cmagnesium.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14685%7Ccfbx.for.182149-183291.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.182149-183291.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.182149-183291.Ar_EST_120301b_c14685%7Ccfbx.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6756%7Ccharged.for.184404-186003.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.184404-186003.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.184404-186003.Ar_EST_120301b_rep_c6756%7Ccharged.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19315%7Csperm.for.184412-185594.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.184412-185594.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.184412-185594.Ar_EST_120301b_rep_c19315%7Csperm.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8432%7Cprotein.for.186019-187330.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.186019-187330.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.186019-187330.Ar_EST_120301b_c8432%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9026%7Cadenylate.for.191652-193243.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.191652-193243.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.191652-193243.Ar_EST_120301b_c9026%7Cadenylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig232%7Cprotein.for.195299-197003.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.195299-197003.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.195299-197003.120301b_Contig232%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12355%7Cachain.for.198160-199841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.198160-199841.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.198160-199841.Ar_EST_120301b_c12355%7Cachain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11421%7Ccbpn%3A.for.199372-200960.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.199372-200960.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.199372-200960.Ar_EST_120301b_c11421%7Ccbpn%3A.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12326%7Cplasmid.for.201299-202617.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.201299-202617.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.201299-202617.Ar_EST_120301b_c12326%7Cplasmid.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9661%7Cd-lactate.for.202113-203560.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.202113-203560.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.202113-203560.Ar_EST_120301b_c9661%7Cd-lactate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12252%7Cd-2-hydroxyglutarate.for.202849-204171.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.202849-204171.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.202849-204171.Ar_EST_120301b_c12252%7Cd-2-hydroxyglutarate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig82%7Cprofilin.for.205645-207160.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.205645-207160.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.205645-207160.120301b_Contig82%7Cprofilin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19204%7Ctachyzoite.for.206003-207254.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.206003-207254.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.206003-207254.Ar_EST_120301b_c19204%7Ctachyzoite.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18472%7C0298140.for.214230-215255.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.214230-215255.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.214230-215255.Ar_EST_120301b_c18472%7C0298140.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 20 ...processing 1 of 20 ...processing 2 of 20 ...processing 3 of 20 ...processing 4 of 20 ...processing 5 of 20 ...processing 6 of 20 ...processing 7 of 20 ...processing 8 of 20 ...processing 9 of 20 ...processing 10 of 20 ...processing 11 of 20 ...processing 12 of 20 ...processing 13 of 20 ...processing 14 of 20 ...processing 15 of 20 ...processing 16 of 20 ...processing 17 of 20 ...processing 18 of 20 ...processing 19 of 20 ...trimming the rest total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:78 now processing 0 total clusters:78 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 total clusters:78 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:108 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:95 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:92 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:111 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:103 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:97 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:95 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:105 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:98 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:90 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082602%7Cgb%7CEFC36317%2E1%7C.for.12704-14707.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.12704-14707.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.12704-14707.gi%7C284082602%7Cgb%7CEFC36317%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091570%7Cgb%7CEFC45216%2E1%7C.for.11917-15472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.11917-15472.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.11917-15472.gi%7C284091570%7Cgb%7CEFC45216%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091249%7Cgb%7CEFC44897%2E1%7C.for.15448-16409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.15448-16409.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.15448-16409.gi%7C284091249%7Cgb%7CEFC44897%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094467%7Cgb%7CEFC48101%2E1%7C.for.17077-18694.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.17077-18694.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.17077-18694.gi%7C284094467%7Cgb%7CEFC48101%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084713%7Cgb%7CEFC38403%2E1%7C.for.19098-20221.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.19098-20221.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.19098-20221.gi%7C284084713%7Cgb%7CEFC38403%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083098%7Cgb%7CEFC36805%2E1%7C.for.18813-20302.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.18813-20302.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.18813-20302.gi%7C284083098%7Cgb%7CEFC36805%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089888%7Cgb%7CEFC43543%2E1%7C.for.25893-27843.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.25893-27843.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.25893-27843.gi%7C284089888%7Cgb%7CEFC43543%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089773%7Cgb%7CEFC43428%2E1%7C.for.26241-27855.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.26241-27855.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.26241-27855.gi%7C284089773%7Cgb%7CEFC43428%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097150%7Cgb%7CEFC50777%2E1%7C.for.29329-30989.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.29329-30989.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.29329-30989.gi%7C284097150%7Cgb%7CEFC50777%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092355%7Cgb%7CEFC45997%2E1%7C.for.29371-30977.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.29371-30977.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.29371-30977.gi%7C284092355%7Cgb%7CEFC45997%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096259%7Cgb%7CEFC49887%2E1%7C.for.29368-30926.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.29368-30926.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.29368-30926.gi%7C284096259%7Cgb%7CEFC49887%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089294%7Cgb%7CEFC42952%2E1%7C.for.30300-31853.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.30300-31853.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.30300-31853.gi%7C284089294%7Cgb%7CEFC42952%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096906%7Cgb%7CEFC50533%2E1%7C.for.31243-32294.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.31243-32294.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.31243-32294.gi%7C284096906%7Cgb%7CEFC50533%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080983%7Cgb%7CEFC35253%2E1%7C.for.32408-33930.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32408-33930.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32408-33930.gi%7C284080983%7Cgb%7CEFC35253%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083648%7Cgb%7CEFC37349%2E1%7C.for.32417-33987.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32417-33987.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32417-33987.gi%7C284083648%7Cgb%7CEFC37349%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096419%7Cgb%7CEFC50047%2E1%7C.for.32417-33759.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32417-33759.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32417-33759.gi%7C284096419%7Cgb%7CEFC50047%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084263%7Cgb%7CEFC37957%2E1%7C.for.32417-33741.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32417-33741.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32417-33741.gi%7C284084263%7Cgb%7CEFC37957%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086669%7Cgb%7CEFC40344%2E1%7C.for.32417-33459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32417-33459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32417-33459.gi%7C284086669%7Cgb%7CEFC40344%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092998%7Cgb%7CEFC46638%2E1%7C.for.35392-37509.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.35392-37509.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.35392-37509.gi%7C284092998%7Cgb%7CEFC46638%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082062%7Cgb%7CEFC35848%2E1%7C.for.35398-37130.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.35398-37130.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.35398-37130.gi%7C284082062%7Cgb%7CEFC35848%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087626%7Cgb%7CEFC41294%2E1%7C.for.35461-37506.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.35461-37506.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.35461-37506.gi%7C284087626%7Cgb%7CEFC41294%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089694%7Cgb%7CEFC43350%2E1%7C.for.41200-43226.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.41200-43226.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.41200-43226.gi%7C284089694%7Cgb%7CEFC43350%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089398%7Cgb%7CEFC43056%2E1%7C.for.43509-45184.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.43509-45184.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.43509-45184.gi%7C284089398%7Cgb%7CEFC43056%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094642%7Cgb%7CEFC48275%2E1%7C.for.49328-51487.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.49328-51487.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.49328-51487.gi%7C284094642%7Cgb%7CEFC48275%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083741%7Cgb%7CEFC37441%2E1%7C.for.50946-52528.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.50946-52528.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.50946-52528.gi%7C284083741%7Cgb%7CEFC37441%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089583%7Cgb%7CEFC43240%2E1%7C.for.53473-54613.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.53473-54613.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.53473-54613.gi%7C284089583%7Cgb%7CEFC43240%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095256%7Cgb%7CEFC48887%2E1%7C.for.54305-55518.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.54305-55518.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.54305-55518.gi%7C284095256%7Cgb%7CEFC48887%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081631%7Cgb%7CEFC35564%2E1%7C.for.55682-57063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.55682-57063.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.55682-57063.gi%7C284081631%7Cgb%7CEFC35564%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092518%7Cgb%7CEFC46160%2E1%7C.for.57083-58569.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57083-58569.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57083-58569.gi%7C284092518%7Cgb%7CEFC46160%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080970%7Cgb%7CEFC35250%2E1%7C.for.57107-58131.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57107-58131.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57107-58131.gi%7C284080970%7Cgb%7CEFC35250%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092387%7Cgb%7CEFC46029%2E1%7C.for.57110-58599.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57110-58599.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57110-58599.gi%7C284092387%7Cgb%7CEFC46029%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091231%7Cgb%7CEFC44879%2E1%7C.for.57122-58599.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57122-58599.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57122-58599.gi%7C284091231%7Cgb%7CEFC44879%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096309%7Cgb%7CEFC49937%2E1%7C.for.57119-58602.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57119-58602.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57119-58602.gi%7C284096309%7Cgb%7CEFC49937%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086017%7Cgb%7CEFC39696%2E1%7C.for.57122-58626.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57122-58626.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57122-58626.gi%7C284086017%7Cgb%7CEFC39696%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092312%7Cgb%7CEFC45955%2E1%7C.for.66552-68221.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.66552-68221.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.66552-68221.gi%7C284092312%7Cgb%7CEFC45955%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095663%7Cgb%7CEFC49293%2E1%7C.for.73646-75543.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.73646-75543.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.73646-75543.gi%7C284095663%7Cgb%7CEFC49293%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089244%7Cgb%7CEFC42903%2E1%7C.for.75047-77273.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.75047-77273.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.75047-77273.gi%7C284089244%7Cgb%7CEFC42903%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088914%7Cgb%7CEFC42574%2E1%7C.for.81456-82906.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.81456-82906.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.81456-82906.gi%7C284088914%7Cgb%7CEFC42574%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088237%7Cgb%7CEFC41902%2E1%7C.for.87474-88462.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87474-88462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87474-88462.gi%7C284088237%7Cgb%7CEFC41902%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088639%7Cgb%7CEFC42301%2E1%7C.for.87465-88486.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87465-88486.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87465-88486.gi%7C284088639%7Cgb%7CEFC42301%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086665%7Cgb%7CEFC40340%2E1%7C.for.87405-88381.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87405-88381.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87405-88381.gi%7C284086665%7Cgb%7CEFC40340%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086663%7Cgb%7CEFC40338%2E1%7C.for.87462-88381.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87462-88381.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87462-88381.gi%7C284086663%7Cgb%7CEFC40338%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087769%7Cgb%7CEFC41436%2E1%7C.for.87438-88381.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87438-88381.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87438-88381.gi%7C284087769%7Cgb%7CEFC41436%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095431%7Cgb%7CEFC49062%2E1%7C.for.94523-95901.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.94523-95901.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.94523-95901.gi%7C284095431%7Cgb%7CEFC49062%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087201%7Cgb%7CEFC40872%2E1%7C.for.97862-99309.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.97862-99309.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.97862-99309.gi%7C284087201%7Cgb%7CEFC40872%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088832%7Cgb%7CEFC42493%2E1%7C.for.102590-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102590-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102590-104469.gi%7C284088832%7Cgb%7CEFC42493%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089566%7Cgb%7CEFC43223%2E1%7C.for.102560-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104469.gi%7C284089566%7Cgb%7CEFC43223%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091175%7Cgb%7CEFC44823%2E1%7C.for.102545-104466.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104466.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104466.gi%7C284091175%7Cgb%7CEFC44823%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086467%7Cgb%7CEFC40143%2E1%7C.for.102557-104463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102557-104463.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102557-104463.gi%7C284086467%7Cgb%7CEFC40143%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091949%7Cgb%7CEFC45593%2E1%7C.for.102563-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104469.gi%7C284091949%7Cgb%7CEFC45593%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093022%7Cgb%7CEFC46662%2E1%7C.for.102551-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.gi%7C284093022%7Cgb%7CEFC46662%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084913%7Cgb%7CEFC38601%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284084913%7Cgb%7CEFC38601%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091907%7Cgb%7CEFC45551%2E1%7C.for.102551-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.gi%7C284091907%7Cgb%7CEFC45551%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081216%7Cgb%7CEFC35341%2E1%7C.for.102545-103866.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-103866.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-103866.gi%7C284081216%7Cgb%7CEFC35341%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094255%7Cgb%7CEFC47890%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284094255%7Cgb%7CEFC47890%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085698%7Cgb%7CEFC39380%2E1%7C.for.102551-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.gi%7C284085698%7Cgb%7CEFC39380%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085910%7Cgb%7CEFC39590%2E1%7C.for.102554-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-104469.gi%7C284085910%7Cgb%7CEFC39590%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085859%7Cgb%7CEFC39540%2E1%7C.for.102560-104466.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104466.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104466.gi%7C284085859%7Cgb%7CEFC39540%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082408%7Cgb%7CEFC36130%2E1%7C.for.102539-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102539-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102539-104469.gi%7C284082408%7Cgb%7CEFC36130%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084215%7Cgb%7CEFC37910%2E1%7C.for.102563-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104469.gi%7C284084215%7Cgb%7CEFC37910%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082818%7Cgb%7CEFC36529%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284082818%7Cgb%7CEFC36529%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092206%7Cgb%7CEFC45849%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284092206%7Cgb%7CEFC45849%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084133%7Cgb%7CEFC37829%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284084133%7Cgb%7CEFC37829%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093050%7Cgb%7CEFC46689%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284093050%7Cgb%7CEFC46689%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081499%7Cgb%7CEFC35479%2E1%7C.for.102938-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102938-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102938-104469.gi%7C284081499%7Cgb%7CEFC35479%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090387%7Cgb%7CEFC44039%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284090387%7Cgb%7CEFC44039%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083870%7Cgb%7CEFC37569%2E1%7C.for.102545-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.gi%7C284083870%7Cgb%7CEFC37569%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090106%7Cgb%7CEFC43759%2E1%7C.for.102563-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104469.gi%7C284090106%7Cgb%7CEFC43759%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092467%7Cgb%7CEFC46109%2E1%7C.for.102563-104442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104442.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104442.gi%7C284092467%7Cgb%7CEFC46109%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081169%7Cgb%7CEFC35319%2E1%7C.for.103178-104463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103178-104463.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103178-104463.gi%7C284081169%7Cgb%7CEFC35319%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081941%7Cgb%7CEFC35759%2E1%7C.for.102899-104112.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102899-104112.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102899-104112.gi%7C284081941%7Cgb%7CEFC35759%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C7140539%7Cgb%7CAAF37002%2E1%7C.for.102551-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.gi%7C7140539%7Cgb%7CAAF37002%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C41016928%7Csp%7CQ9NJV4%2E1%7CACT1_NAEGR.for.102551-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.gi%7C41016928%7Csp%7CQ9NJV4%2E1%7CACT1_NAEGR.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091080%7Cgb%7CEFC44728%2E1%7C.for.102551-104346.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104346.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104346.gi%7C284091080%7Cgb%7CEFC44728%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081758%7Cgb%7CEFC35638%2E1%7C.for.102899-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102899-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102899-104469.gi%7C284081758%7Cgb%7CEFC35638%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090316%7Cgb%7CEFC43968%2E1%7C.for.102530-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102530-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102530-104469.gi%7C284090316%7Cgb%7CEFC43968%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087026%7Cgb%7CEFC40698%2E1%7C.for.102566-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102566-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102566-104469.gi%7C284087026%7Cgb%7CEFC40698%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085061%7Cgb%7CEFC38748%2E1%7C.for.102557-104451.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102557-104451.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102557-104451.gi%7C284085061%7Cgb%7CEFC38748%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084193%7Cgb%7CEFC37888%2E1%7C.for.102560-104460.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104460.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104460.gi%7C284084193%7Cgb%7CEFC37888%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091169%7Cgb%7CEFC44817%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284091169%7Cgb%7CEFC44817%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089912%7Cgb%7CEFC43567%2E1%7C.for.102554-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-104469.gi%7C284089912%7Cgb%7CEFC43567%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096128%7Cgb%7CEFC49757%2E1%7C.for.102551-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.gi%7C284096128%7Cgb%7CEFC49757%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089027%7Cgb%7CEFC42687%2E1%7C.for.102545-104463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104463.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104463.gi%7C284089027%7Cgb%7CEFC42687%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095858%7Cgb%7CEFC49487%2E1%7C.for.102557-104463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102557-104463.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102557-104463.gi%7C284095858%7Cgb%7CEFC49487%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094965%7Cgb%7CEFC48597%2E1%7C.for.102566-104382.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102566-104382.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102566-104382.gi%7C284094965%7Cgb%7CEFC48597%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089319%7Cgb%7CEFC42977%2E1%7C.for.102938-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102938-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102938-104469.gi%7C284089319%7Cgb%7CEFC42977%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094182%7Cgb%7CEFC47817%2E1%7C.for.103238-104466.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103238-104466.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103238-104466.gi%7C284094182%7Cgb%7CEFC47817%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092093%7Cgb%7CEFC45736%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284092093%7Cgb%7CEFC45736%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081879%7Cgb%7CEFC35716%2E1%7C.for.102899-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102899-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102899-104469.gi%7C284081879%7Cgb%7CEFC35716%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096899%7Cgb%7CEFC50526%2E1%7C.for.102554-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-104469.gi%7C284096899%7Cgb%7CEFC50526%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089740%7Cgb%7CEFC43396%2E1%7C.for.102545-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.gi%7C284089740%7Cgb%7CEFC43396%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089378%7Cgb%7CEFC43036%2E1%7C.for.102560-104442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104442.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104442.gi%7C284089378%7Cgb%7CEFC43036%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092856%7Cgb%7CEFC46496%2E1%7C.for.102545-104442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104442.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104442.gi%7C284092856%7Cgb%7CEFC46496%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094994%7Cgb%7CEFC48626%2E1%7C.for.102563-104463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104463.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104463.gi%7C284094994%7Cgb%7CEFC48626%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087839%7Cgb%7CEFC41506%2E1%7C.for.102545-104463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104463.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104463.gi%7C284087839%7Cgb%7CEFC41506%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083654%7Cgb%7CEFC37355%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284083654%7Cgb%7CEFC37355%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096006%7Cgb%7CEFC49635%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284096006%7Cgb%7CEFC49635%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085784%7Cgb%7CEFC39465%2E1%7C.for.102545-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.gi%7C284085784%7Cgb%7CEFC39465%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094441%7Cgb%7CEFC48075%2E1%7C.for.102545-104463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104463.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104463.gi%7C284094441%7Cgb%7CEFC48075%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093507%7Cgb%7CEFC47145%2E1%7C.for.102545-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.gi%7C284093507%7Cgb%7CEFC47145%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091207%7Cgb%7CEFC44855%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284091207%7Cgb%7CEFC44855%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090413%7Cgb%7CEFC44065%2E1%7C.for.102554-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-104469.gi%7C284090413%7Cgb%7CEFC44065%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093025%7Cgb%7CEFC46665%2E1%7C.for.102545-104073.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104073.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104073.gi%7C284093025%7Cgb%7CEFC46665%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090925%7Cgb%7CEFC44574%2E1%7C.for.102560-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104469.gi%7C284090925%7Cgb%7CEFC44574%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096977%7Cgb%7CEFC50604%2E1%7C.for.102674-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102674-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102674-104469.gi%7C284096977%7Cgb%7CEFC50604%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086629%7Cgb%7CEFC40304%2E1%7C.for.102551-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.gi%7C284086629%7Cgb%7CEFC40304%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095925%7Cgb%7CEFC49554%2E1%7C.for.102545-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.gi%7C284095925%7Cgb%7CEFC49554%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084108%7Cgb%7CEFC37804%2E1%7C.for.102542-103899.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-103899.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-103899.gi%7C284084108%7Cgb%7CEFC37804%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097217%7Cgb%7CEFC50844%2E1%7C.for.102551-104463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104463.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104463.gi%7C284097217%7Cgb%7CEFC50844%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087564%7Cgb%7CEFC41233%2E1%7C.for.105921-107575.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105921-107575.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105921-107575.gi%7C284087564%7Cgb%7CEFC41233%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083763%7Cgb%7CEFC37463%2E1%7C.for.105939-107563.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105939-107563.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105939-107563.gi%7C284083763%7Cgb%7CEFC37463%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087027%7Cgb%7CEFC40699%2E1%7C.for.105870-107503.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105870-107503.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105870-107503.gi%7C284087027%7Cgb%7CEFC40699%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093481%7Cgb%7CEFC47119%2E1%7C.for.105897-107503.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105897-107503.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105897-107503.gi%7C284093481%7Cgb%7CEFC47119%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087852%7Cgb%7CEFC41519%2E1%7C.for.105918-107479.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105918-107479.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105918-107479.gi%7C284087852%7Cgb%7CEFC41519%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083950%7Cgb%7CEFC37648%2E1%7C.for.105891-107584.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105891-107584.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105891-107584.gi%7C284083950%7Cgb%7CEFC37648%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084476%7Cgb%7CEFC38168%2E1%7C.for.105891-107422.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105891-107422.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105891-107422.gi%7C284084476%7Cgb%7CEFC38168%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088746%7Cgb%7CEFC42408%2E1%7C.for.105876-107506.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105876-107506.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105876-107506.gi%7C284088746%7Cgb%7CEFC42408%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095404%7Cgb%7CEFC49035%2E1%7C.for.124756-128537.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.124756-128537.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.124756-128537.gi%7C284095404%7Cgb%7CEFC49035%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090058%7Cgb%7CEFC43712%2E1%7C.for.129157-130455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.129157-130455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.129157-130455.gi%7C284090058%7Cgb%7CEFC43712%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095332%7Cgb%7CEFC48963%2E1%7C.for.132784-134747.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.132784-134747.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.132784-134747.gi%7C284095332%7Cgb%7CEFC48963%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093977%7Cgb%7CEFC47613%2E1%7C.for.139882-141374.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139882-141374.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139882-141374.gi%7C284093977%7Cgb%7CEFC47613%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088986%7Cgb%7CEFC42646%2E1%7C.for.139876-141374.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139876-141374.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139876-141374.gi%7C284088986%7Cgb%7CEFC42646%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084480%7Cgb%7CEFC38172%2E1%7C.for.140935-142691.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.140935-142691.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.140935-142691.gi%7C284084480%7Cgb%7CEFC38172%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084385%7Cgb%7CEFC38078%2E1%7C.for.140935-142691.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.140935-142691.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.140935-142691.gi%7C284084385%7Cgb%7CEFC38078%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093250%7Cgb%7CEFC46889%2E1%7C.for.144298-145361.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.144298-145361.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.144298-145361.gi%7C284093250%7Cgb%7CEFC46889%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.154523-157683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154523-157683.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154523-157683.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.for.154520-157728.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154520-157728.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154520-157728.gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.for.154493-157671.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154493-157671.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154493-157671.gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.for.154550-157671.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154550-157671.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154550-157671.gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088147%7Cgb%7CEFC41812%2E1%7C.for.154784-157671.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154784-157671.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154784-157671.gi%7C284088147%7Cgb%7CEFC41812%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.for.154781-157494.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154781-157494.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154781-157494.gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084257%7Cgb%7CEFC37951%2E1%7C.for.154544-158337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154544-158337.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154544-158337.gi%7C284084257%7Cgb%7CEFC37951%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.for.154526-157821.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154526-157821.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154526-157821.gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.for.154514-157683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154514-157683.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154514-157683.gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.for.154550-157683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154550-157683.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154550-157683.gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087408%7Cgb%7CEFC41078%2E1%7C.for.154526-157671.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154526-157671.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154526-157671.gi%7C284087408%7Cgb%7CEFC41078%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084506%7Cgb%7CEFC38198%2E1%7C.for.154550-157707.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154550-157707.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154550-157707.gi%7C284084506%7Cgb%7CEFC38198%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094023%7Cgb%7CEFC47658%2E1%7C.for.154526-157677.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154526-157677.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154526-157677.gi%7C284094023%7Cgb%7CEFC47658%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.for.154940-157443.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154940-157443.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154940-157443.gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091599%7Cgb%7CEFC45245%2E1%7C.for.154628-157437.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154628-157437.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154628-157437.gi%7C284091599%7Cgb%7CEFC45245%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.for.154991-157653.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154991-157653.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154991-157653.gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097262%7Cgb%7CEFC50889%2E1%7C.for.161178-163191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.161178-163191.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.161178-163191.gi%7C284097262%7Cgb%7CEFC50889%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096748%7Cgb%7CEFC50375%2E1%7C.for.164142-165611.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.164142-165611.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.164142-165611.gi%7C284096748%7Cgb%7CEFC50375%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095896%7Cgb%7CEFC49525%2E1%7C.for.164151-165614.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.164151-165614.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.164151-165614.gi%7C284095896%7Cgb%7CEFC49525%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094517%7Cgb%7CEFC48151%2E1%7C.for.167331-168490.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167331-168490.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167331-168490.gi%7C284094517%7Cgb%7CEFC48151%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090204%7Cgb%7CEFC43857%2E1%7C.for.168021-169063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.168021-169063.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.168021-169063.gi%7C284090204%7Cgb%7CEFC43857%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085110%7Cgb%7CEFC38796%2E1%7C.for.180033-181667.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.180033-181667.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.180033-181667.gi%7C284085110%7Cgb%7CEFC38796%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089126%7Cgb%7CEFC42785%2E1%7C.for.184670-185961.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.184670-185961.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.184670-185961.gi%7C284089126%7Cgb%7CEFC42785%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085008%7Cgb%7CEFC38695%2E1%7C.for.184670-185745.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.184670-185745.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.184670-185745.gi%7C284085008%7Cgb%7CEFC38695%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084707%7Cgb%7CEFC38397%2E1%7C.for.187068-188147.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.187068-188147.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.187068-188147.gi%7C284084707%7Cgb%7CEFC38397%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089061%7Cgb%7CEFC42721%2E1%7C.for.188067-192365.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.188067-192365.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.188067-192365.gi%7C284089061%7Cgb%7CEFC42721%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089121%7Cgb%7CEFC42780%2E1%7C.for.197096-200432.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.197096-200432.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.197096-200432.gi%7C284089121%7Cgb%7CEFC42780%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089246%7Cgb%7CEFC42905%2E1%7C.for.202027-204158.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.202027-204158.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.202027-204158.gi%7C284089246%7Cgb%7CEFC42905%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094815%7Cgb%7CEFC48448%2E1%7C.for.205605-208688.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.205605-208688.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.205605-208688.gi%7C284094815%7Cgb%7CEFC48448%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086419%7Cgb%7CEFC40096%2E1%7C.for.209039-216557.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.209039-216557.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.209039-216557.gi%7C284086419%7Cgb%7CEFC40096%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:43 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:43 now processing 0 total clusters:43 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:43 now processing 0 total clusters:43 now processing 0 ...processing 0 of 64 ...processing 1 of 64 ...processing 2 of 64 ...processing 3 of 64 ...processing 4 of 64 ...processing 5 of 64 ...processing 6 of 64 ...processing 7 of 64 ...processing 8 of 64 ...processing 9 of 64 ...processing 10 of 64 ...processing 11 of 64 ...processing 12 of 64 ...processing 13 of 64 ...processing 14 of 64 ...processing 15 of 64 ...processing 16 of 64 ...processing 17 of 64 ...processing 18 of 64 ...processing 19 of 64 ...processing 20 of 64 ...processing 21 of 64 ...processing 22 of 64 ...processing 23 of 64 ...processing 24 of 64 ...processing 25 of 64 ...processing 26 of 64 ...processing 27 of 64 ...processing 28 of 64 ...processing 29 of 64 ...processing 30 of 64 ...processing 31 of 64 ...processing 32 of 64 ...processing 33 of 64 ...processing 34 of 64 ...processing 35 of 64 ...processing 36 of 64 ...processing 37 of 64 ...processing 38 of 64 ...processing 39 of 64 ...processing 40 of 64 ...processing 41 of 64 ...processing 42 of 64 ...processing 43 of 64 ...processing 44 of 64 ...processing 45 of 64 ...processing 46 of 64 ...processing 47 of 64 ...processing 48 of 64 ...processing 49 of 64 ...processing 50 of 64 ...processing 51 of 64 ...processing 52 of 64 ...processing 53 of 64 ...processing 54 of 64 ...processing 55 of 64 ...processing 56 of 64 ...processing 57 of 64 ...processing 58 of 64 ...processing 59 of 64 ...processing 60 of 64 ...processing 61 of 64 ...processing 62 of 64 ...processing 63 of 64 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:43 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:43 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 total clusters:43 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 62 ...processing 1 of 62 ...processing 2 of 62 ...processing 3 of 62 ...processing 4 of 62 ...processing 5 of 62 ...processing 6 of 62 ...processing 7 of 62 ...processing 8 of 62 ...processing 9 of 62 ...processing 10 of 62 ...processing 11 of 62 ...processing 12 of 62 ...processing 13 of 62 ...processing 14 of 62 ...processing 15 of 62 ...processing 16 of 62 ...processing 17 of 62 ...processing 18 of 62 ...processing 19 of 62 ...processing 20 of 62 ...processing 21 of 62 ...processing 22 of 62 ...processing 23 of 62 ...processing 24 of 62 ...processing 25 of 62 ...processing 26 of 62 ...processing 27 of 62 ...processing 28 of 62 ...processing 29 of 62 ...processing 30 of 62 ...processing 31 of 62 ...processing 32 of 62 ...processing 33 of 62 ...processing 34 of 62 ...processing 35 of 62 ...processing 36 of 62 ...processing 37 of 62 ...processing 38 of 62 ...processing 39 of 62 ...processing 40 of 62 ...processing 41 of 62 ...processing 42 of 62 ...processing 43 of 62 ...processing 44 of 62 ...processing 45 of 62 ...processing 46 of 62 ...processing 47 of 62 ...processing 48 of 62 ...processing 49 of 62 ...processing 50 of 62 ...processing 51 of 62 ...processing 52 of 62 ...processing 53 of 62 ...processing 54 of 62 ...processing 55 of 62 ...processing 56 of 62 ...processing 57 of 62 ...processing 58 of 62 ...processing 59 of 62 ...processing 60 of 62 ...processing 61 of 62 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 ...processing 0 of 21 ...processing 1 of 21 ...processing 2 of 21 ...processing 3 of 21 ...processing 4 of 21 ...processing 5 of 21 ...processing 6 of 21 ...processing 7 of 21 ...processing 8 of 21 ...processing 9 of 21 ...processing 10 of 21 ...processing 11 of 21 ...processing 12 of 21 ...processing 13 of 21 ...processing 14 of 21 ...processing 15 of 21 ...processing 16 of 21 ...processing 17 of 21 ...processing 18 of 21 ...processing 19 of 21 ...processing 20 of 21 ...trimming the rest total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 18 ...processing 1 of 18 ...processing 2 of 18 ...processing 3 of 18 ...processing 4 of 18 ...processing 5 of 18 ...processing 6 of 18 ...processing 7 of 18 ...processing 8 of 18 ...processing 9 of 18 ...processing 10 of 18 ...processing 11 of 18 ...processing 12 of 18 ...processing 13 of 18 ...processing 14 of 18 ...processing 15 of 18 ...processing 16 of 18 ...processing 17 of 18 ...processing 0 of 20 ...processing 1 of 20 ...processing 2 of 20 ...processing 3 of 20 ...processing 4 of 20 ...processing 5 of 20 ...processing 6 of 20 ...processing 7 of 20 ...processing 8 of 20 ...processing 9 of 20 ...processing 10 of 20 ...processing 11 of 20 ...processing 12 of 20 ...processing 13 of 20 ...processing 14 of 20 ...processing 15 of 20 ...processing 16 of 20 ...processing 17 of 20 ...processing 18 of 20 ...processing 19 of 20 ...trimming the rest ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 20 ...processing 1 of 20 ...processing 2 of 20 ...processing 3 of 20 ...processing 4 of 20 ...processing 5 of 20 ...processing 6 of 20 ...processing 7 of 20 ...processing 8 of 20 ...processing 9 of 20 ...processing 10 of 20 ...processing 11 of 20 ...processing 12 of 20 ...processing 13 of 20 ...processing 14 of 20 ...processing 15 of 20 ...processing 16 of 20 ...processing 17 of 20 ...processing 18 of 20 ...processing 19 of 20 ...trimming the rest ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 total clusters:42 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:42 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.2005-2807.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.2005-2807.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.2005-2807.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.5530-7787.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.5530-7787.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.5530-7787.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.10288-11233.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.10288-11233.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.10288-11233.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.12116-15315.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.12116-15315.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.12116-15315.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.19006-20102.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.19006-20102.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.19006-20102.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.21536-22595.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.21536-22595.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.21536-22595.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.25950-27655.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.25950-27655.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.25950-27655.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.27857-31715.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.27857-31715.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.27857-31715.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.35586-37309.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.35586-37309.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.35586-37309.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.40730-41618.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.40730-41618.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.40730-41618.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.43708-45000.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.43708-45000.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.43708-45000.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.49527-52473.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.49527-52473.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.49527-52473.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.53672-54413.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.53672-54413.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.53672-54413.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.54492-55318.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.54492-55318.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.54492-55318.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.55881-56863.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.55881-56863.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.55881-56863.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.57280-60097.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.57280-60097.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.57280-60097.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.66697-68021.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.66697-68021.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.66697-68021.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.69158-70100.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.69158-70100.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.69158-70100.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.78085-79067.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.78085-79067.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.78085-79067.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.80532-81487.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.80532-81487.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.80532-81487.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.93822-94850.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.93822-94850.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.93822-94850.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.101415-102357.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.101415-102357.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.101415-102357.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.102627-104449.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.102627-104449.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.102627-104449.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.108513-109328.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.108513-109328.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.108513-109328.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.111791-113231.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.111791-113231.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.111791-113231.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.113930-114726.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.113930-114726.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.113930-114726.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.124943-129695.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.124943-129695.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.124943-129695.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.132983-134579.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.132983-134579.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.132983-134579.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.138571-139595.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.138571-139595.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.138571-139595.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.141080-142508.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.141080-142508.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.141080-142508.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.143385-144467.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.143385-144467.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.143385-144467.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.154722-157471.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.154722-157471.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.154722-157471.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.164341-165667.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.164341-165667.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.164341-165667.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.167354-168389.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.167354-168389.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.167354-168389.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.168992-169495.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.168992-169495.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.168992-169495.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.174395-175263.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.174395-175263.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.174395-175263.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.178304-180211.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.178304-180211.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.178304-180211.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.180232-181471.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.180232-181471.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.180232-181471.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.184599-185803.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.184599-185803.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.184599-185803.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.188266-192165.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.188266-192165.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.188266-192165.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/40_0.209238-216357.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/40_0.209238-216357.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/40_0.209238-216357.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/41_0.8368-9559.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/41_0.8368-9559.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/41_0.8368-9559.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/42_0.15647-16209.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/42_0.15647-16209.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/42_0.15647-16209.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/43_0.19709-21488.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/43_0.19709-21488.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/43_0.19709-21488.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/44_0.31442-32094.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/44_0.31442-32094.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/44_0.31442-32094.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/45_0.32607-33730.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/45_0.32607-33730.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/45_0.32607-33730.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/46_0.36998-38200.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/46_0.36998-38200.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/46_0.36998-38200.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/47_0.41399-43026.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/47_0.41399-43026.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/47_0.41399-43026.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/48_0.46534-49127.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/48_0.46534-49127.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/48_0.46534-49127.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/49_0.60601-62837.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/49_0.60601-62837.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/49_0.60601-62837.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/50_0.71180-72791.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/50_0.71180-72791.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/50_0.71180-72791.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/51_0.73817-77145.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/51_0.73817-77145.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/51_0.73817-77145.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/52_0.81575-82706.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/52_0.81575-82706.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/52_0.81575-82706.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/53_0.94722-95805.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/53_0.94722-95805.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/53_0.94722-95805.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/54_0.96303-98215.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/54_0.96303-98215.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/54_0.96303-98215.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/55_0.98398-99325.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/55_0.98398-99325.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/55_0.98398-99325.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/56_0.102756-103291.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/56_0.102756-103291.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/56_0.102756-103291.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/57_0.103462-104351.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/57_0.103462-104351.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/57_0.103462-104351.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/58_0.106037-107477.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/58_0.106037-107477.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/58_0.106037-107477.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/59_0.109445-110094.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/59_0.109445-110094.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/59_0.109445-110094.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/60_0.129342-130265.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/60_0.129342-130265.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/60_0.129342-130265.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/61_0.139478-141218.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/61_0.139478-141218.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/61_0.139478-141218.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/62_0.142324-143297.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/62_0.142324-143297.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/62_0.142324-143297.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/63_0.144390-145272.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/63_0.144390-145272.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/63_0.144390-145272.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/64_0.151376-152918.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/64_0.151376-152918.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/64_0.151376-152918.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/65_0.161368-163003.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/65_0.161368-163003.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/65_0.161368-163003.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/66_0.166496-167680.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/66_0.166496-167680.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/66_0.166496-167680.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/67_0.168050-168863.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/67_0.168050-168863.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/67_0.168050-168863.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/68_0.172890-173863.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/68_0.172890-173863.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/68_0.172890-173863.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/69_0.175424-178257.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/69_0.175424-178257.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/69_0.175424-178257.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/70_0.181713-183091.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/70_0.181713-183091.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/70_0.181713-183091.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/71_0.186218-187151.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/71_0.186218-187151.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/71_0.186218-187151.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/72_0.187267-187947.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/72_0.187267-187947.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/72_0.187267-187947.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/73_0.191838-193043.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/73_0.191838-193043.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/73_0.191838-193043.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/74_0.195498-196803.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/74_0.195498-196803.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/74_0.195498-196803.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/75_0.197295-200760.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/75_0.197295-200760.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/75_0.197295-200760.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/76_0.201498-203971.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/76_0.201498-203971.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/76_0.201498-203971.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/77_0.205804-208491.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/77_0.205804-208491.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/77_0.205804-208491.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C20 Length: 38198 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:45 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:39 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:32 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:47 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:32 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:53 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:33 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:46 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:43 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:43 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:6 current j:0 j_size:6 current j:1 j_size:6 current j:2 j_size:6 current j:3 j_size:6 current j:4 j_size:6 current j:5 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C20.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C20.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18583%7Cnpad-.for.1604-3053.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1604-3053.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1604-3053.Ar_EST_120301b_rep_c18583%7Cnpad-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7720%7Ccfw16-.for.1383-2872.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1383-2872.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1383-2872.Ar_EST_120301b_rep_c7720%7Ccfw16-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19891%7Cxotch.for.707-2213.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.707-2213.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.707-2213.Ar_EST_120301b_c19891%7Cxotch.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11264%7Cfr663913.for.1286-2855.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1286-2855.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1286-2855.Ar_EST_120301b_rep_c11264%7Cfr663913.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18557%7Chypothetical.for.708-2095.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.708-2095.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.708-2095.Ar_EST_120301b_c18557%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19899%7Cccfh.for.1605-3040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1605-3040.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1605-3040.Ar_EST_120301b_rep_c19899%7Cccfh.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19932%7Cccfh.for.1559-2870.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1559-2870.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1559-2870.Ar_EST_120301b_rep_c19932%7Cccfh.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10247%7Cccza.for.1600-2933.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1600-2933.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1600-2933.Ar_EST_120301b_rep_c10247%7Cccza.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20330%7Chypothetical.for.837-1940.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.837-1940.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.837-1940.Ar_EST_120301b_rep_c20330%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12661%7C---NA---.for.5097-6432.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.5097-6432.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.5097-6432.Ar_EST_120301b_c12661%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17581%7Cdnaj.for.12404-13615.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.12404-13615.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.12404-13615.Ar_EST_120301b_c17581%7Cdnaj.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2840%7C---NA---.for.13023-14330.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.13023-14330.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.13023-14330.Ar_EST_120301b_c2840%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9108%7Caj495322.for.14219-15252.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.14219-15252.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.14219-15252.Ar_EST_120301b_c9108%7Caj495322.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12145%7Cfq013894.for.21499-22670.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.21499-22670.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.21499-22670.Ar_EST_120301b_c12145%7Cfq013894.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10994%7Cct751907.for.22605-23506.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.22605-23506.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.22605-23506.Ar_EST_120301b_c10994%7Cct751907.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17786%7Ckr3b.for.29517-30923.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.29517-30923.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.29517-30923.Ar_EST_120301b_c17786%7Ckr3b.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10857%7C---NA---.for.30343-31585.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.30343-31585.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.30343-31585.Ar_EST_120301b_c10857%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15255%7Cresponse.for.37377-38198.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.37377-38198.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.37377-38198.Ar_EST_120301b_c15255%7Cresponse.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13487%7Cseed.for.37227-38178.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.37227-38178.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.37227-38178.Ar_EST_120301b_c13487%7Cseed.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:9 now processing 0 total clusters:9 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:6 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:7 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:3 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:7 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:7 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:4 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:4 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:7 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:6 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:8 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091150%7Cgb%7CEFC44798%2E1%7C.for.8240-10218.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.8240-10218.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.8240-10218.gi%7C284091150%7Cgb%7CEFC44798%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088477%7Cgb%7CEFC42140%2E1%7C.for.9487-12538.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.9487-12538.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.9487-12538.gi%7C284088477%7Cgb%7CEFC42140%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... cleaning clusters.... total clusters:2 now processing 0 total clusters:2 now processing 0 cleaning clusters.... total clusters:1 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:6 now processing 0 total clusters:6 now processing 0 total clusters:6 now processing 0 total clusters:6 now processing 0 total clusters:6 now processing 0 total clusters:6 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:5 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:5 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:5 now processing 0 total clusters:5 now processing 0 total clusters:5 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.1494-2766.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.1494-2766.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.1494-2766.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.8439-10018.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.8439-10018.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.8439-10018.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.13222-14130.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.13222-14130.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.13222-14130.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.21660-22549.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.21660-22549.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.21660-22549.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.29658-30723.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.29658-30723.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.29658-30723.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.867-2865.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.867-2865.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.867-2865.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.5296-6232.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.5296-6232.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.5296-6232.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.9686-12338.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.9686-12338.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.9686-12338.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.37550-38198.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.37550-38198.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.37550-38198.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C21 Length: 24727 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C21.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C21.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5800%7Cprotein.for.2340-4098.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.2340-4098.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.2340-4098.Ar_EST_120301b_rep_c5800%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4503%7Cpredicted.for.6316-7743.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.6316-7743.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.6316-7743.Ar_EST_120301b_rep_c4503%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17043%7Ccpad-.for.6339-7461.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.6339-7461.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.6339-7461.Ar_EST_120301b_rep_c17043%7Ccpad-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17466%7C---NA---.for.7916-8809.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.7916-8809.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.7916-8809.Ar_EST_120301b_c17466%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14567%7Cvacuolar.for.9221-10207.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.9221-10207.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.9221-10207.Ar_EST_120301b_c14567%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3574%7Cankyrin.for.9580-11322.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.9580-11322.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.9580-11322.Ar_EST_120301b_c3574%7Cankyrin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10050%7Cunnamed.for.11732-13128.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.11732-13128.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.11732-13128.Ar_EST_120301b_c10050%7Cunnamed.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16424%7Canolis.for.11685-13057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.11685-13057.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.11685-13057.Ar_EST_120301b_c16424%7Canolis.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20139%7Cproteasome.for.13952-15118.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.13952-15118.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.13952-15118.Ar_EST_120301b_rep_c20139%7Cproteasome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13540%7Cproteasome.for.14127-15285.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.14127-15285.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.14127-15285.Ar_EST_120301b_rep_c13540%7Cproteasome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17751%7Cproteasome.for.14041-15068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.14041-15068.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.14041-15068.Ar_EST_120301b_rep_c17751%7Cproteasome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4249%7Cprotein.for.13843-15445.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.13843-15445.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.13843-15445.Ar_EST_120301b_rep_c4249%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5673%7Cprotein.for.13889-15485.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.13889-15485.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.13889-15485.Ar_EST_120301b_rep_c5673%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18370%7Cgadus.for.17163-18491.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.17163-18491.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.17163-18491.Ar_EST_120301b_c18370%7Cgadus.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19634%7Cvirulent.for.19726-21273.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.19726-21273.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.19726-21273.Ar_EST_120301b_c19634%7Cvirulent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8853%7Ccopper.for.19140-21075.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.19140-21075.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.19140-21075.Ar_EST_120301b_c8853%7Ccopper.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1070%7Cdiguanylate.for.21034-22812.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.21034-22812.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.21034-22812.120301b_Contig1070%7Cdiguanylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1904%7Cprotein.for.22134-23516.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.22134-23516.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.22134-23516.Ar_EST_120301b_c1904%7Cprotein.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 total clusters:12 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:4 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:3 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:4 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:7 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:1 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095582%7Cgb%7CEFC49212%2E1%7C.for.2381-4068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.2381-4068.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.2381-4068.gi%7C284095582%7Cgb%7CEFC49212%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094662%7Cgb%7CEFC48295%2E1%7C.for.7742-9864.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.7742-9864.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.7742-9864.gi%7C284094662%7Cgb%7CEFC48295%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084498%7Cgb%7CEFC38190%2E1%7C.for.11338-12284.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.11338-12284.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.11338-12284.gi%7C284084498%7Cgb%7CEFC38190%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092281%7Cgb%7CEFC45924%2E1%7C.for.13885-15347.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.13885-15347.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.13885-15347.gi%7C284092281%7Cgb%7CEFC45924%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:3 now processing 0 total clusters:3 now processing 0 total clusters:3 now processing 0 in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:3 now processing 0 total clusters:3 now processing 0 total clusters:3 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:5 now processing 0 total clusters:5 now processing 0 total clusters:5 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:5 now processing 0 total clusters:5 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.2539-3898.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.2539-3898.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.2539-3898.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.7941-11126.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.7941-11126.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.7941-11126.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.19260-20889.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.19260-20889.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.19260-20889.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.21233-23332.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.21233-23332.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.21233-23332.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.6512-7543.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.6512-7543.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.6512-7543.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.11878-12928.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.11878-12928.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.11878-12928.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.14042-15285.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.14042-15285.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.14042-15285.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.17362-18291.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.17362-18291.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.17362-18291.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C22 Length: 180468 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C22.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C22.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15895%7Cgm-c1079.for.1-833.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.1-833.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.1-833.Ar_EST_120301b_c15895%7Cgm-c1079.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8111%7Ccbwo.for.3047-4827.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.3047-4827.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.3047-4827.Ar_EST_120301b_c8111%7Ccbwo.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15281%7Cche.for.4950-6277.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.4950-6277.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.4950-6277.Ar_EST_120301b_c15281%7Cche.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13217%7C020709ofm1010015ht.for.10660-11968.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.10660-11968.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.10660-11968.Ar_EST_120301b_c13217%7C020709ofm1010015ht.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17472%7Cfgp.for.14234-15465.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.14234-15465.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.14234-15465.Ar_EST_120301b_c17472%7Cfgp.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2415%7Cdomain-containing.for.14389-16400.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.14389-16400.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.14389-16400.Ar_EST_120301b_c2415%7Cdomain-containing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2973%7Crho.for.15426-17284.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.15426-17284.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.15426-17284.Ar_EST_120301b_c2973%7Crho.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3263%7Cnuphar.for.15935-17294.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.15935-17294.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.15935-17294.Ar_EST_120301b_c3263%7Cnuphar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1203%7Cthioredoxin.for.19166-20557.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.19166-20557.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.19166-20557.Ar_EST_120301b_c1203%7Cthioredoxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11684%7Ccopper.for.20132-21528.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.20132-21528.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.20132-21528.Ar_EST_120301b_c11684%7Ccopper.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16190%7C---NA---.for.23672-24979.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.23672-24979.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.23672-24979.Ar_EST_120301b_c16190%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17194%7Cpredicted.for.26296-27953.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.26296-27953.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.26296-27953.Ar_EST_120301b_c17194%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1297%7Csolute.for.29407-30960.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.29407-30960.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.29407-30960.Ar_EST_120301b_c1297%7Csolute.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10700%7Csolute.for.30213-31391.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30213-31391.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30213-31391.Ar_EST_120301b_c10700%7Csolute.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12857%7Cprotein.for.30758-31969.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30758-31969.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30758-31969.Ar_EST_120301b_c12857%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18582%7Cprotein.for.30757-32943.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30757-32943.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30757-32943.Ar_EST_120301b_c18582%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4666%7Crho.for.32331-34513.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.32331-34513.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.32331-34513.Ar_EST_120301b_rep_c4666%7Crho.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6449%7Cdomain-containing.for.32564-34314.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.32564-34314.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.32564-34314.Ar_EST_120301b_rep_c6449%7Cdomain-containing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4579%7C1-acyl-sn-glycerol-3-phosphate.for.33988-35641.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.33988-35641.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.33988-35641.Ar_EST_120301b_rep_c4579%7C1-acyl-sn-glycerol-3-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3473%7Cprotein.for.35861-38720.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.35861-38720.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.35861-38720.Ar_EST_120301b_c3473%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11453%7Couter.for.38483-39907.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.38483-39907.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.38483-39907.Ar_EST_120301b_c11453%7Couter.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12870%7Couter.for.39201-40965.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.39201-40965.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.39201-40965.Ar_EST_120301b_c12870%7Couter.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10342%7C---NA---.for.40424-42250.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.40424-42250.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.40424-42250.Ar_EST_120301b_c10342%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14468%7Cprotein.for.43627-44751.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.43627-44751.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.43627-44751.Ar_EST_120301b_c14468%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12413%7Crp.for.49689-51198.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.49689-51198.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.49689-51198.Ar_EST_120301b_c12413%7Crp.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16757%7Cby805517.for.51678-52789.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.51678-52789.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.51678-52789.Ar_EST_120301b_c16757%7Cby805517.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13658%7Cats1.for.56100-57631.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.56100-57631.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.56100-57631.Ar_EST_120301b_c13658%7Cats1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15371%7Cprobable.for.55732-57167.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.55732-57167.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.55732-57167.Ar_EST_120301b_c15371%7Cprobable.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19612%7Cats1.for.56807-57882.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.56807-57882.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.56807-57882.Ar_EST_120301b_c19612%7Cats1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18250%7Calpha.for.57860-59681.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.57860-59681.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.57860-59681.Ar_EST_120301b_c18250%7Calpha.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17288%7Cusda-fp_187010.for.59310-60593.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.59310-60593.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.59310-60593.Ar_EST_120301b_c17288%7Cusda-fp_187010.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4677%7Celongation.for.62390-64153.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.62390-64153.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.62390-64153.Ar_EST_120301b_rep_c4677%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2115%7Cacyl.for.64729-66060.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.64729-66060.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.64729-66060.Ar_EST_120301b_c2115%7Cacyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12587%7Cdolichyl-phosphate.for.65716-66849.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.65716-66849.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.65716-66849.Ar_EST_120301b_c12587%7Cdolichyl-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2089%7Cdolichyl-phosphate.for.65880-67602.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.65880-67602.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.65880-67602.Ar_EST_120301b_c2089%7Cdolichyl-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12186%7Crwp-rk.for.67114-68491.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.67114-68491.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.67114-68491.Ar_EST_120301b_c12186%7Crwp-rk.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15048%7Cnih_xgc_tropbrn3.for.67816-69083.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.67816-69083.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.67816-69083.Ar_EST_120301b_c15048%7Cnih_xgc_tropbrn3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig91%7Cglutamine-fructose-6-phosphate.for.68451-71176.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.68451-71176.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.68451-71176.120301b_Contig91%7Cglutamine-fructose-6-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c875%7Cglucosamine--fructose-6-phosphate.for.69005-71325.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.69005-71325.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.69005-71325.Ar_EST_120301b_c875%7Cglucosamine--fructose-6-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10225%7Cglutamine-fructose-6-phosphate.for.69487-70699.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.69487-70699.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.69487-70699.Ar_EST_120301b_rep_c10225%7Cglutamine-fructose-6-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13849%7C---NA---.for.70740-72086.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.70740-72086.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.70740-72086.Ar_EST_120301b_c13849%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig561%7Cpredicted.for.72048-73967.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.72048-73967.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.72048-73967.120301b_Contig561%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10241%7Cbtb.for.74150-75505.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.74150-75505.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.74150-75505.Ar_EST_120301b_c10241%7Cbtb.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18380%7Cprotein.for.78688-79987.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.78688-79987.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.78688-79987.Ar_EST_120301b_c18380%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11068%7Ccaof_daphnia_pulex_log50_library_12.for.82440-83981.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.82440-83981.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.82440-83981.Ar_EST_120301b_c11068%7Ccaof_daphnia_pulex_log50_library_12.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig150%7Cpas.for.85931-87952.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.85931-87952.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.85931-87952.120301b_Contig150%7Cpas.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15760%7C---NA---.for.87182-88494.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.87182-88494.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.87182-88494.Ar_EST_120301b_c15760%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9718%7Cprotein.for.89190-90455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.89190-90455.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.89190-90455.Ar_EST_120301b_c9718%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11290%7Cgtpase.for.102845-104156.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102845-104156.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102845-104156.Ar_EST_120301b_c11290%7Cgtpase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13678%7Cendonuclease.for.105562-106984.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.105562-106984.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.105562-106984.Ar_EST_120301b_c13678%7Cendonuclease.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2395%7Cprotein.for.108892-110254.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.108892-110254.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.108892-110254.Ar_EST_120301b_c2395%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16257%7Cyeats.for.110089-111457.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.110089-111457.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.110089-111457.Ar_EST_120301b_c16257%7Cyeats.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16468%7Cest.for.110078-111244.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.110078-111244.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.110078-111244.Ar_EST_120301b_c16468%7Cest.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14583%7Chypothetical.for.111800-113156.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.111800-113156.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.111800-113156.Ar_EST_120301b_c14583%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19785%7Cglucan.for.114526-115915.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.114526-115915.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.114526-115915.Ar_EST_120301b_c19785%7Cglucan.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20171%7Cglucan.for.114230-115683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.114230-115683.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.114230-115683.Ar_EST_120301b_c20171%7Cglucan.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10824%7Cglucan.for.114190-115490.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.114190-115490.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.114190-115490.Ar_EST_120301b_c10824%7Cglucan.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11969%7CPREDICTED%3A.for.115347-116810.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.115347-116810.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.115347-116810.Ar_EST_120301b_c11969%7CPREDICTED%3A.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14936%7Cring.for.116229-117480.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.116229-117480.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.116229-117480.Ar_EST_120301b_c14936%7Cring.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1269%7Caplysia.for.118022-119337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.118022-119337.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.118022-119337.Ar_EST_120301b_c1269%7Caplysia.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12415%7Cpredicted.for.122628-123880.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.122628-123880.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.122628-123880.Ar_EST_120301b_c12415%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17487%7Calpha.for.123103-124405.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.123103-124405.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.123103-124405.Ar_EST_120301b_c17487%7Calpha.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17006%7Cchromosome.for.123729-124995.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.123729-124995.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.123729-124995.Ar_EST_120301b_c17006%7Cchromosome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12054%7C020304kaka008397ht.for.124400-125756.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.124400-125756.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.124400-125756.Ar_EST_120301b_c12054%7C020304kaka008397ht.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9314%7Csi%3Ach211-.for.125989-127607.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.125989-127607.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.125989-127607.Ar_EST_120301b_c9314%7Csi%3Ach211-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11616%7Cprotein.for.127524-129056.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.127524-129056.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.127524-129056.Ar_EST_120301b_c11616%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15708%7Cphosphoserine.for.130824-132017.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.130824-132017.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.130824-132017.Ar_EST_120301b_c15708%7Cphosphoserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c261%7Cphosphoserine.for.131284-132651.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.131284-132651.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.131284-132651.Ar_EST_120301b_c261%7Cphosphoserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17653%7Cphosphoserine.for.131806-133058.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.131806-133058.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.131806-133058.Ar_EST_120301b_rep_c17653%7Cphosphoserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14091%7Cphosphoserine.for.131966-133271.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.131966-133271.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.131966-133271.Ar_EST_120301b_c14091%7Cphosphoserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7121%7Cprotein.for.134097-135719.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.134097-135719.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.134097-135719.Ar_EST_120301b_rep_c7121%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig326%7Cprotein.for.132489-135331.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.132489-135331.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.132489-135331.120301b_Contig326%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16289%7Csec23.for.132743-134105.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.132743-134105.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.132743-134105.Ar_EST_120301b_rep_c16289%7Csec23.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6736%7Caristolochia.for.139828-141206.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139828-141206.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139828-141206.Ar_EST_120301b_rep_c6736%7Caristolochia.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6315%7Cest940366.for.139857-141104.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139857-141104.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139857-141104.Ar_EST_120301b_rep_c6315%7Cest940366.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13068%7Cpooled.for.139871-141029.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139871-141029.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139871-141029.Ar_EST_120301b_rep_c13068%7Cpooled.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13929%7Csq2de42675.for.140270-141202.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.140270-141202.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.140270-141202.Ar_EST_120301b_rep_c13929%7Csq2de42675.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11029%7Cimmunoglobulin.for.139980-141203.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139980-141203.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139980-141203.Ar_EST_120301b_rep_c11029%7Cimmunoglobulin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14946%7Cfy831988.for.140104-141032.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.140104-141032.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.140104-141032.Ar_EST_120301b_rep_c14946%7Cfy831988.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5615%7Cprotein.for.139845-141209.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139845-141209.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139845-141209.Ar_EST_120301b_rep_c5615%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20304%7Cufl_343_70.for.139878-141104.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139878-141104.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139878-141104.Ar_EST_120301b_rep_c20304%7Cufl_343_70.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10688%7Ccj376499.for.140485-141416.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.140485-141416.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.140485-141416.Ar_EST_120301b_c10688%7Ccj376499.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3843%7Cvam6.for.141243-143315.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.141243-143315.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.141243-143315.Ar_EST_120301b_c3843%7Cvam6.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3148%7Cvam6.for.142318-143604.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.142318-143604.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.142318-143604.Ar_EST_120301b_c3148%7Cvam6.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10706%7Cvam6.for.142929-144422.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.142929-144422.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.142929-144422.Ar_EST_120301b_c10706%7Cvam6.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig120%7C24-hydroxycholesterol.for.145010-146443.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.145010-146443.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.145010-146443.120301b_Contig120%7C24-hydroxycholesterol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10803%7Cm-phase.for.158962-160174.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.158962-160174.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.158962-160174.Ar_EST_120301b_c10803%7Cm-phase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3179%7Cm-phase.for.158622-160179.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.158622-160179.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.158622-160179.Ar_EST_120301b_c3179%7Cm-phase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1473%7Cprotein.for.160432-161822.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.160432-161822.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.160432-161822.Ar_EST_120301b_c1473%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15862%7Cu1.for.161228-162785.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.161228-162785.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.161228-162785.Ar_EST_120301b_c15862%7Cu1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1039%7Cprotein.for.162586-165745.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162586-165745.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162586-165745.Ar_EST_120301b_c1039%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12113%7Cphospholipid-transporting.for.164845-166131.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.164845-166131.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.164845-166131.Ar_EST_120301b_c12113%7Cphospholipid-transporting.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1202%7Cprotein.for.165461-167255.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.165461-167255.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.165461-167255.Ar_EST_120301b_c1202%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig428%7Celongation.for.167131-168358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.167131-168358.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.167131-168358.120301b_Contig428%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16475%7Cspindle.for.173063-174841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.173063-174841.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.173063-174841.Ar_EST_120301b_c16475%7Cspindle.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8917%7Cmicrotubule.for.174515-176826.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.174515-176826.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.174515-176826.Ar_EST_120301b_c8917%7Cmicrotubule.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2889%7Cmicrotubule.for.176603-178213.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.176603-178213.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.176603-178213.Ar_EST_120301b_c2889%7Cmicrotubule.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13984%7Cubiquinone.for.178435-179738.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.178435-179738.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.178435-179738.Ar_EST_120301b_c13984%7Cubiquinone.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16223%7Cpredicted.for.179641-180468.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.179641-180468.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.179641-180468.Ar_EST_120301b_rep_c16223%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c356%7Csenescence.for.179460-180468.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.179460-180468.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.179460-180468.Ar_EST_120301b_c356%7Csenescence.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17910%7Cvon.for.179465-180468.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.179465-180468.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.179465-180468.Ar_EST_120301b_rep_c17910%7Cvon.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:67 now processing 0 total clusters:67 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:67 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:67 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:67 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 total clusters:67 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:67 now processing 0 total clusters:67 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:37 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:41 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:41 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:48 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:53 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:50 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:44 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:55 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:53 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:32 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090387%7Cgb%7CEFC44039%2E1%7C.for.5934-7992.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.5934-7992.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.5934-7992.gi%7C284090387%7Cgb%7CEFC44039%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086420%7Cgb%7CEFC40097%2E1%7C.for.5946-8004.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.5946-8004.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.5946-8004.gi%7C284086420%7Cgb%7CEFC40097%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095349%7Cgb%7CEFC48980%2E1%7C.for.13485-14822.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.13485-14822.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.13485-14822.gi%7C284095349%7Cgb%7CEFC48980%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088756%7Cgb%7CEFC42418%2E1%7C.for.18996-20509.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.18996-20509.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.18996-20509.gi%7C284088756%7Cgb%7CEFC42418%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085637%7Cgb%7CEFC39319%2E1%7C.for.21370-22523.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.21370-22523.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.21370-22523.gi%7C284085637%7Cgb%7CEFC39319%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093747%7Cgb%7CEFC47384%2E1%7C.for.21217-22490.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.21217-22490.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.21217-22490.gi%7C284093747%7Cgb%7CEFC47384%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090698%7Cgb%7CEFC44348%2E1%7C.for.29504-31352.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.29504-31352.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.29504-31352.gi%7C284090698%7Cgb%7CEFC44348%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087383%7Cgb%7CEFC41053%2E1%7C.for.30814-32875.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30814-32875.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30814-32875.gi%7C284087383%7Cgb%7CEFC41053%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090239%7Cgb%7CEFC43892%2E1%7C.for.30865-32893.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30865-32893.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30865-32893.gi%7C284090239%7Cgb%7CEFC43892%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096950%7Cgb%7CEFC50577%2E1%7C.for.57873-59706.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.57873-59706.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.57873-59706.gi%7C284096950%7Cgb%7CEFC50577%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084213%7Cgb%7CEFC37908%2E1%7C.for.60507-63139.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.60507-63139.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.60507-63139.gi%7C284084213%7Cgb%7CEFC37908%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082995%7Cgb%7CEFC36703%2E1%7C.for.64841-65805.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.64841-65805.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.64841-65805.gi%7C284082995%7Cgb%7CEFC36703%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089602%7Cgb%7CEFC43258%2E1%7C.for.64728-65820.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.64728-65820.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.64728-65820.gi%7C284089602%7Cgb%7CEFC43258%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090820%7Cgb%7CEFC44470%2E1%7C.for.65960-67598.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.65960-67598.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.65960-67598.gi%7C284090820%7Cgb%7CEFC44470%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086979%7Cgb%7CEFC40652%2E1%7C.for.68893-71309.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.68893-71309.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.68893-71309.gi%7C284086979%7Cgb%7CEFC40652%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092246%7Cgb%7CEFC45889%2E1%7C.for.72193-73918.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.72193-73918.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.72193-73918.gi%7C284092246%7Cgb%7CEFC45889%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092608%7Cgb%7CEFC46249%2E1%7C.for.72208-73689.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.72208-73689.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.72208-73689.gi%7C284092608%7Cgb%7CEFC46249%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090371%7Cgb%7CEFC44023%2E1%7C.for.77792-79425.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.77792-79425.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.77792-79425.gi%7C284090371%7Cgb%7CEFC44023%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083121%7Cgb%7CEFC36828%2E1%7C.for.77795-79434.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.77795-79434.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.77795-79434.gi%7C284083121%7Cgb%7CEFC36828%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096642%7Cgb%7CEFC50269%2E1%7C.for.78695-79815.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.78695-79815.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.78695-79815.gi%7C284096642%7Cgb%7CEFC50269%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090576%7Cgb%7CEFC44227%2E1%7C.for.81422-83085.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.81422-83085.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.81422-83085.gi%7C284090576%7Cgb%7CEFC44227%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089802%7Cgb%7CEFC43457%2E1%7C.for.96533-98537.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.96533-98537.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.96533-98537.gi%7C284089802%7Cgb%7CEFC43457%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096866%7Cgb%7CEFC50493%2E1%7C.for.102814-104145.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104145.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104145.gi%7C284096866%7Cgb%7CEFC50493%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095151%7Cgb%7CEFC48783%2E1%7C.for.102823-104157.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102823-104157.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102823-104157.gi%7C284095151%7Cgb%7CEFC48783%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094810%7Cgb%7CEFC48443%2E1%7C.for.102808-104136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102808-104136.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102808-104136.gi%7C284094810%7Cgb%7CEFC48443%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093204%7Cgb%7CEFC46843%2E1%7C.for.102814-104115.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104115.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104115.gi%7C284093204%7Cgb%7CEFC46843%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095060%7Cgb%7CEFC48692%2E1%7C.for.102805-104241.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102805-104241.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102805-104241.gi%7C284095060%7Cgb%7CEFC48692%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088157%7Cgb%7CEFC41822%2E1%7C.for.102802-104127.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104127.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104127.gi%7C284088157%7Cgb%7CEFC41822%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095231%7Cgb%7CEFC48862%2E1%7C.for.102814-104220.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104220.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104220.gi%7C284095231%7Cgb%7CEFC48862%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092330%7Cgb%7CEFC45972%2E1%7C.for.102808-104265.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102808-104265.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102808-104265.gi%7C284092330%7Cgb%7CEFC45972%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087986%7Cgb%7CEFC41652%2E1%7C.for.102802-104154.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104154.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104154.gi%7C284087986%7Cgb%7CEFC41652%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085175%7Cgb%7CEFC38861%2E1%7C.for.102793-104148.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102793-104148.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102793-104148.gi%7C284085175%7Cgb%7CEFC38861%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095711%7Cgb%7CEFC49341%2E1%7C.for.102790-104265.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102790-104265.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102790-104265.gi%7C284095711%7Cgb%7CEFC49341%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092198%7Cgb%7CEFC45841%2E1%7C.for.102802-104148.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104148.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104148.gi%7C284092198%7Cgb%7CEFC45841%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093945%7Cgb%7CEFC47581%2E1%7C.for.102811-104103.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102811-104103.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102811-104103.gi%7C284093945%7Cgb%7CEFC47581%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096673%7Cgb%7CEFC50300%2E1%7C.for.102805-104136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102805-104136.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102805-104136.gi%7C284096673%7Cgb%7CEFC50300%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087489%7Cgb%7CEFC41158%2E1%7C.for.102802-104265.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104265.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104265.gi%7C284087489%7Cgb%7CEFC41158%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083677%7Cgb%7CEFC37378%2E1%7C.for.102814-104127.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104127.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104127.gi%7C284083677%7Cgb%7CEFC37378%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081592%7Cgb%7CEFC35538%2E1%7C.for.102802-104157.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104157.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104157.gi%7C284081592%7Cgb%7CEFC35538%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096540%7Cgb%7CEFC50168%2E1%7C.for.102811-104127.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102811-104127.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102811-104127.gi%7C284096540%7Cgb%7CEFC50168%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086692%7Cgb%7CEFC40367%2E1%7C.for.102796-104265.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102796-104265.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102796-104265.gi%7C284086692%7Cgb%7CEFC40367%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087105%7Cgb%7CEFC40777%2E1%7C.for.102781-104211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102781-104211.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102781-104211.gi%7C284087105%7Cgb%7CEFC40777%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087910%7Cgb%7CEFC41577%2E1%7C.for.102790-104136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102790-104136.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102790-104136.gi%7C284087910%7Cgb%7CEFC41577%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087186%7Cgb%7CEFC40857%2E1%7C.for.102814-104124.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104124.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104124.gi%7C284087186%7Cgb%7CEFC40857%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095576%7Cgb%7CEFC49206%2E1%7C.for.102799-104136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102799-104136.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102799-104136.gi%7C284095576%7Cgb%7CEFC49206%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080992%7Cgb%7CEFC35256%2E1%7C.for.103025-104196.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.103025-104196.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.103025-104196.gi%7C284080992%7Cgb%7CEFC35256%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095585%7Cgb%7CEFC49215%2E1%7C.for.102802-104205.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104205.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104205.gi%7C284095585%7Cgb%7CEFC49215%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087063%7Cgb%7CEFC40735%2E1%7C.for.102808-104133.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102808-104133.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102808-104133.gi%7C284087063%7Cgb%7CEFC40735%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089507%7Cgb%7CEFC43164%2E1%7C.for.102793-104115.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102793-104115.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102793-104115.gi%7C284089507%7Cgb%7CEFC43164%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096356%7Cgb%7CEFC49984%2E1%7C.for.102781-104115.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102781-104115.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102781-104115.gi%7C284096356%7Cgb%7CEFC49984%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092994%7Cgb%7CEFC46634%2E1%7C.for.102814-104004.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104004.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104004.gi%7C284092994%7Cgb%7CEFC46634%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089169%7Cgb%7CEFC42828%2E1%7C.for.117066-118771.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.117066-118771.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.117066-118771.gi%7C284089169%7Cgb%7CEFC42828%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090561%7Cgb%7CEFC44212%2E1%7C.for.122519-125055.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.122519-125055.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.122519-125055.gi%7C284090561%7Cgb%7CEFC44212%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096574%7Cgb%7CEFC50202%2E1%7C.for.127726-128828.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.127726-128828.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.127726-128828.gi%7C284096574%7Cgb%7CEFC50202%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088808%7Cgb%7CEFC42469%2E1%7C.for.130514-133218.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.130514-133218.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.130514-133218.gi%7C284088808%7Cgb%7CEFC42469%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084220%7Cgb%7CEFC37915%2E1%7C.for.132499-135658.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.132499-135658.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.132499-135658.gi%7C284084220%7Cgb%7CEFC37915%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095359%7Cgb%7CEFC48990%2E1%7C.for.138504-139857.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.138504-139857.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.138504-139857.gi%7C284095359%7Cgb%7CEFC48990%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091769%7Cgb%7CEFC45414%2E1%7C.for.141348-145005.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.141348-145005.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.141348-145005.gi%7C284091769%7Cgb%7CEFC45414%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085225%7Cgb%7CEFC38911%2E1%7C.for.158649-159862.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.158649-159862.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.158649-159862.gi%7C284085225%7Cgb%7CEFC38911%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081490%7Cgb%7CEFC35474%2E1%7C.for.160404-162051.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.160404-162051.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.160404-162051.gi%7C284081490%7Cgb%7CEFC35474%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092821%7Cgb%7CEFC46461%2E1%7C.for.162694-166950.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162694-166950.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162694-166950.gi%7C284092821%7Cgb%7CEFC46461%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083022%7Cgb%7CEFC36730%2E1%7C.for.162712-166962.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162712-166962.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162712-166962.gi%7C284083022%7Cgb%7CEFC36730%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093552%7Cgb%7CEFC47189%2E1%7C.for.162712-167013.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162712-167013.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162712-167013.gi%7C284093552%7Cgb%7CEFC47189%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085695%7Cgb%7CEFC39377%2E1%7C.for.162712-167037.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162712-167037.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162712-167037.gi%7C284085695%7Cgb%7CEFC39377%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085694%7Cgb%7CEFC39376%2E1%7C.for.162712-167037.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162712-167037.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162712-167037.gi%7C284085694%7Cgb%7CEFC39376%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082133%7Cgb%7CEFC35904%2E1%7C.for.165317-166962.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.165317-166962.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.165317-166962.gi%7C284082133%7Cgb%7CEFC35904%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086144%7Cgb%7CEFC39822%2E1%7C.for.169433-170394.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.169433-170394.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.169433-170394.gi%7C284086144%7Cgb%7CEFC39822%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090570%7Cgb%7CEFC44221%2E1%7C.for.178423-180014.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.178423-180014.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.178423-180014.gi%7C284090570%7Cgb%7CEFC44221%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 26 ...processing 1 of 26 ...processing 2 of 26 ...processing 3 of 26 ...processing 4 of 26 ...processing 5 of 26 ...processing 6 of 26 ...processing 7 of 26 ...processing 8 of 26 ...processing 9 of 26 ...processing 10 of 26 ...processing 11 of 26 ...processing 12 of 26 ...processing 13 of 26 ...processing 14 of 26 ...processing 15 of 26 ...processing 16 of 26 ...processing 17 of 26 ...processing 18 of 26 ...processing 19 of 26 ...processing 20 of 26 ...processing 21 of 26 ...processing 22 of 26 ...processing 23 of 26 ...processing 24 of 26 ...processing 25 of 26 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 22 ...processing 1 of 22 ...processing 2 of 22 ...processing 3 of 22 ...processing 4 of 22 ...processing 5 of 22 ...processing 6 of 22 ...processing 7 of 22 ...processing 8 of 22 ...processing 9 of 22 ...processing 10 of 22 ...processing 11 of 22 ...processing 12 of 22 ...processing 13 of 22 ...processing 14 of 22 ...processing 15 of 22 ...processing 16 of 22 ...processing 17 of 22 ...processing 18 of 22 ...processing 19 of 22 ...processing 20 of 22 ...processing 21 of 22 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:37 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:34 now processing 0 total clusters:34 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.0-851.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.0-851.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.0-851.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.3246-4627.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.3246-4627.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.3246-4627.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.6133-7804.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.6133-7804.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.6133-7804.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.10859-11768.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.10859-11768.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.10859-11768.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.20331-21328.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.20331-21328.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.20331-21328.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.21416-22323.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.21416-22323.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.21416-22323.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.26495-27753.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.26495-27753.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.26495-27753.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.30953-32743.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.30953-32743.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.30953-32743.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.49888-57927.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.49888-57927.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.49888-57927.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.58059-59506.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.58059-59506.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.58059-59506.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.60706-62939.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.60706-62939.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.60706-62939.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.65915-71109.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.65915-71109.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.65915-71109.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.74349-75305.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.74349-75305.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.74349-75305.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.77994-79234.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.77994-79234.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.77994-79234.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.81540-82885.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.81540-82885.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.81540-82885.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.86130-88294.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.86130-88294.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.86130-88294.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.102980-104020.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.102980-104020.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.102980-104020.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.109091-110054.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.109091-110054.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.109091-110054.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.117265-118571.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.117265-118571.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.117265-118571.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.126188-127407.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.126188-127407.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.126188-127407.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.130713-133076.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.130713-133076.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.130713-133076.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.138703-139657.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.138703-139657.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.138703-139657.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.140056-140933.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.140056-140933.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.140056-140933.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.141442-144805.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.141442-144805.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.141442-144805.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.159161-159974.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.159161-159974.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.159161-159974.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.160603-162588.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.160603-162588.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.160603-162588.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.162730-167055.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.162730-167055.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.162730-167055.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.173262-178013.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.173262-178013.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.173262-178013.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.179584-180468.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.179584-180468.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.179584-180468.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.5149-6077.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.5149-6077.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.5149-6077.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.13684-17094.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.13684-17094.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.13684-17094.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.19365-20357.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.19365-20357.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.19365-20357.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.23871-24779.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.23871-24779.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.23871-24779.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.29606-31191.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.29606-31191.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.29606-31191.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.32530-35441.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.32530-35441.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.32530-35441.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.36060-44551.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.36060-44551.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.36060-44551.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.59509-60393.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.59509-60393.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.59509-60393.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.64927-65860.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.64927-65860.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.64927-65860.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.70926-71886.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.70926-71886.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.70926-71886.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.72298-73718.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.72298-73718.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.72298-73718.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/40_0.78887-79787.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/40_0.78887-79787.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/40_0.78887-79787.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/41_0.82639-83781.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/41_0.82639-83781.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/41_0.82639-83781.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/42_0.89389-90356.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/42_0.89389-90356.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/42_0.89389-90356.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/43_0.96732-98337.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/43_0.96732-98337.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/43_0.96732-98337.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/44_0.105759-106784.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/44_0.105759-106784.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/44_0.105759-106784.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/45_0.110288-111257.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/45_0.110288-111257.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/45_0.110288-111257.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/46_0.111999-112956.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/46_0.111999-112956.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/46_0.111999-112956.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/47_0.114389-115483.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/47_0.114389-115483.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/47_0.114389-115483.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/48_0.115546-117280.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/48_0.115546-117280.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/48_0.115546-117280.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/49_0.118211-119137.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/49_0.118211-119137.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/49_0.118211-119137.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/50_0.122718-125556.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/50_0.122718-125556.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/50_0.122718-125556.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/51_0.127723-128856.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/51_0.127723-128856.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/51_0.127723-128856.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/52_0.132688-135521.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/52_0.132688-135521.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/52_0.132688-135521.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/53_0.145209-146243.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/53_0.145209-146243.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/53_0.145209-146243.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/54_0.178622-179841.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/54_0.178622-179841.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/54_0.178622-179841.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C23 Length: 251560 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:35 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:53 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:38 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:63 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:51 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:49 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:39 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:41 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:43 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:50 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:7 current j:0 j_size:7 current j:1 j_size:7 current j:2 j_size:7 current j:3 j_size:7 current j:4 j_size:7 current j:5 j_size:7 current j:6 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C23.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C23.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:10 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:14 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:9 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:10 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:11 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:12 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12272%7Chypothetical.for.6337-7736.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.6337-7736.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.6337-7736.Ar_EST_120301b_c12272%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18243%7Cdk907995.for.9153-10368.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.9153-10368.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.9153-10368.Ar_EST_120301b_c18243%7Cdk907995.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7871%7Cdc598359.for.10778-12259.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.10778-12259.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.10778-12259.Ar_EST_120301b_c7871%7Cdc598359.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c875%7Cglucosamine--fructose-6-phosphate.for.10913-12823.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.10913-12823.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.10913-12823.Ar_EST_120301b_c875%7Cglucosamine--fructose-6-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c273%7Cpentatricopeptide.for.11344-13207.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.11344-13207.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.11344-13207.Ar_EST_120301b_c273%7Cpentatricopeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19019%7C8807_100277_12.for.10785-12317.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.10785-12317.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.10785-12317.Ar_EST_120301b_c19019%7C8807_100277_12.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3513%7Cprotein.for.12916-15044.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.12916-15044.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.12916-15044.Ar_EST_120301b_c3513%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11592%7C294772423.for.14264-15572.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.14264-15572.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.14264-15572.Ar_EST_120301b_c11592%7C294772423.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6938%7Cpredicted.for.19566-20958.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.19566-20958.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.19566-20958.Ar_EST_120301b_rep_c6938%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10805%7Cagencourt_26185347.for.30415-32475.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.30415-32475.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.30415-32475.Ar_EST_120301b_c10805%7Cagencourt_26185347.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4838%7Ckeratin.for.32416-34153.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32416-34153.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32416-34153.Ar_EST_120301b_rep_c4838%7Ckeratin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6302%7Ckeratin.for.32987-34348.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32987-34348.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32987-34348.Ar_EST_120301b_rep_c6302%7Ckeratin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5667%7Ckeratin.for.32077-34405.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32077-34405.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32077-34405.Ar_EST_120301b_rep_c5667%7Ckeratin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18263%7Cpredicted.for.32928-34003.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32928-34003.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32928-34003.Ar_EST_120301b_rep_c18263%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6913%7Csmc.for.32076-33516.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32076-33516.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32076-33516.Ar_EST_120301b_rep_c6913%7Csmc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15759%7Csplicing.for.38497-39943.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.38497-39943.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.38497-39943.Ar_EST_120301b_c15759%7Csplicing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1630%7Cprotein.for.39271-41325.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.39271-41325.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.39271-41325.Ar_EST_120301b_c1630%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c983%7Csplicing.for.40524-41827.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.40524-41827.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.40524-41827.Ar_EST_120301b_c983%7Csplicing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15568%7Cspliceosome-associated.for.40292-41528.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.40292-41528.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.40292-41528.Ar_EST_120301b_c15568%7Cspliceosome-associated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11774%7Csplicing.for.41071-42349.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41071-42349.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41071-42349.Ar_EST_120301b_c11774%7Csplicing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3650%7Crsc.for.46681-50017.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.46681-50017.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.46681-50017.Ar_EST_120301b_c3650%7Crsc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9332%7Cswi.for.49559-51021.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.49559-51021.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.49559-51021.Ar_EST_120301b_c9332%7Cswi.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11295%7Cbeach.for.50529-52094.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.50529-52094.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.50529-52094.Ar_EST_120301b_c11295%7Cbeach.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10349%7Cbeach.for.51738-53143.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.51738-53143.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.51738-53143.Ar_EST_120301b_c10349%7Cbeach.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18164%7Cneurobeachin-like.for.52474-53990.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.52474-53990.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.52474-53990.Ar_EST_120301b_c18164%7Cneurobeachin-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1782%7Cneurobeachin-like.for.54265-55844.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.54265-55844.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.54265-55844.Ar_EST_120301b_c1782%7Cneurobeachin-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2203%7Cbeach.for.55572-57353.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.55572-57353.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.55572-57353.Ar_EST_120301b_c2203%7Cbeach.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11079%7Cprotein.for.57324-58683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.57324-58683.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.57324-58683.Ar_EST_120301b_c11079%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1313%7Cvacuolar.for.57990-59334.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.57990-59334.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.57990-59334.Ar_EST_120301b_c1313%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c145%7C40s.for.58792-60295.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.58792-60295.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.58792-60295.Ar_EST_120301b_c145%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c936%7Chypothetical.for.59809-61596.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.59809-61596.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.59809-61596.Ar_EST_120301b_c936%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15515%7Cprotein.for.60545-61895.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.60545-61895.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.60545-61895.Ar_EST_120301b_c15515%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14904%7Cmetal-dependent.for.62278-63609.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.62278-63609.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.62278-63609.Ar_EST_120301b_c14904%7Cmetal-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10329%7Cav385603.for.63143-64309.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.63143-64309.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.63143-64309.Ar_EST_120301b_c10329%7Cav385603.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19262%7Csignal.for.62864-64138.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.62864-64138.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.62864-64138.Ar_EST_120301b_c19262%7Csignal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1637%7Cdna.for.66879-69168.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.66879-69168.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.66879-69168.Ar_EST_120301b_c1637%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14997%7Cdna.for.68365-69679.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.68365-69679.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.68365-69679.Ar_EST_120301b_c14997%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13721%7CHypothetical.for.70080-71563.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.70080-71563.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.70080-71563.Ar_EST_120301b_c13721%7CHypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3375%7Crelated.for.70835-72195.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.70835-72195.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.70835-72195.Ar_EST_120301b_c3375%7Crelated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6563%7Cmeloidogyne.for.71999-73500.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.71999-73500.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.71999-73500.Ar_EST_120301b_rep_c6563%7Cmeloidogyne.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13629%7Cpredicted.for.72275-73348.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.72275-73348.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.72275-73348.Ar_EST_120301b_rep_c13629%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20446%7C40s.for.72275-73499.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.72275-73499.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.72275-73499.Ar_EST_120301b_rep_c20446%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10109%7Ctrc_19-.for.72002-73566.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.72002-73566.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.72002-73566.Ar_EST_120301b_rep_c10109%7Ctrc_19-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig430%7Cssalnwh504101.for.72000-73472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.72000-73472.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.72000-73472.120301b_Contig430%7Cssalnwh504101.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig229%7Cnucleotide.for.73892-76171.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.73892-76171.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.73892-76171.120301b_Contig229%7Cnucleotide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2043%7Cnucleotide.for.75653-76987.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.75653-76987.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.75653-76987.Ar_EST_120301b_c2043%7Cnucleotide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8983%7C---NA---.for.76553-78232.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.76553-78232.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.76553-78232.Ar_EST_120301b_c8983%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12405%7Cwd40.for.77496-78867.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.77496-78867.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.77496-78867.Ar_EST_120301b_c12405%7Cwd40.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4427%7Cglk1_triva.for.80928-83103.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.80928-83103.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.80928-83103.Ar_EST_120301b_rep_c4427%7Cglk1_triva.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17133%7C---NA---.for.85095-86344.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.85095-86344.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.85095-86344.Ar_EST_120301b_c17133%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7928%7Cig.for.86040-87963.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.86040-87963.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.86040-87963.Ar_EST_120301b_c7928%7Cig.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12649%7Cprotein.for.87787-89098.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.87787-89098.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.87787-89098.Ar_EST_120301b_c12649%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2907%7Cubiquitin.for.90189-92656.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.90189-92656.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.90189-92656.Ar_EST_120301b_c2907%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2207%7Cubiquitin.for.92015-93326.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.92015-93326.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.92015-93326.Ar_EST_120301b_c2207%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8690%7Chypothetical.for.93831-95434.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.93831-95434.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.93831-95434.Ar_EST_120301b_c8690%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1542%7Chypothetical.for.93572-95544.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.93572-95544.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.93572-95544.Ar_EST_120301b_c1542%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c307%7Cpotassium.for.97783-99799.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.97783-99799.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.97783-99799.Ar_EST_120301b_c307%7Cpotassium.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1137%7Cpotassium.for.99027-100692.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.99027-100692.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.99027-100692.120301b_Contig1137%7Cpotassium.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1107%7Crubrerythrin.for.102806-104060.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.102806-104060.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.102806-104060.Ar_EST_120301b_c1107%7Crubrerythrin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9961%7Clv_hc_ra061h09f.for.103467-105337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.103467-105337.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.103467-105337.Ar_EST_120301b_c9961%7Clv_hc_ra061h09f.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3345%7Cmdfw.for.104538-106152.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.104538-106152.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.104538-106152.Ar_EST_120301b_c3345%7Cmdfw.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2319%7Cl-aspartate.for.105561-107091.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.105561-107091.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.105561-107091.Ar_EST_120301b_c2319%7Cl-aspartate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17231%7Cl-aspartate.for.105988-107295.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.105988-107295.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.105988-107295.Ar_EST_120301b_c17231%7Cl-aspartate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6462%7Cheat.for.108680-110085.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.108680-110085.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.108680-110085.Ar_EST_120301b_rep_c6462%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9388%7Cribosomal.for.108641-109814.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.108641-109814.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.108641-109814.Ar_EST_120301b_rep_c9388%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5623%7Cprotein.for.108638-110171.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.108638-110171.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.108638-110171.Ar_EST_120301b_rep_c5623%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13361%7Crasgtpase-activating.for.108910-110082.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.108910-110082.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.108910-110082.Ar_EST_120301b_rep_c13361%7Crasgtpase-activating.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14704%7Ccbht.for.110606-111814.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.110606-111814.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.110606-111814.Ar_EST_120301b_c14704%7Ccbht.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9096%7Cshort-chain.for.113730-115106.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.113730-115106.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.113730-115106.Ar_EST_120301b_c9096%7Cshort-chain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c617%7Cshort-chain.for.114369-115855.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.114369-115855.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.114369-115855.Ar_EST_120301b_c617%7Cshort-chain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11555%7Ccondensin.for.115828-117655.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.115828-117655.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.115828-117655.Ar_EST_120301b_c11555%7Ccondensin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4730%7C2-oxoglutarate.for.118383-120710.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.118383-120710.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.118383-120710.Ar_EST_120301b_rep_c4730%7C2-oxoglutarate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9087%7C2-oxoglutarate.for.119310-120836.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.119310-120836.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.119310-120836.Ar_EST_120301b_rep_c9087%7C2-oxoglutarate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c377%7Coxoglutarate.for.119770-121524.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.119770-121524.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.119770-121524.Ar_EST_120301b_c377%7Coxoglutarate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig86%7Coxoglutarate.for.120319-122186.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.120319-122186.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.120319-122186.120301b_Contig86%7Coxoglutarate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9136%7C---NA---.for.121984-123442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.121984-123442.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.121984-123442.Ar_EST_120301b_c9136%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15662%7C04bax.for.123453-124718.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.123453-124718.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.123453-124718.Ar_EST_120301b_c15662%7C04bax.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10569%7C---NA---.for.124646-125909.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.124646-125909.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.124646-125909.Ar_EST_120301b_c10569%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9106%7Cest1049462.for.126134-128669.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.126134-128669.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.126134-128669.Ar_EST_120301b_c9106%7Cest1049462.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig958%7Cwd.for.128313-130118.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.128313-130118.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.128313-130118.120301b_Contig958%7Cwd.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7976%7Cvacuolar.for.129482-131502.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.129482-131502.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.129482-131502.Ar_EST_120301b_c7976%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4653%7Cloc496093.for.132642-134563.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.132642-134563.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.132642-134563.Ar_EST_120301b_rep_c4653%7Cloc496093.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14445%7Cguanine.for.132861-133899.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.132861-133899.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.132861-133899.Ar_EST_120301b_rep_c14445%7Cguanine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7186%7Cloc496093.for.132642-134374.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.132642-134374.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.132642-134374.Ar_EST_120301b_rep_c7186%7Cloc496093.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13603%7Cnuclear.for.133797-134929.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.133797-134929.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.133797-134929.Ar_EST_120301b_c13603%7Cnuclear.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16532%7Coxax-.for.134229-135699.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.134229-135699.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.134229-135699.Ar_EST_120301b_c16532%7Coxax-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5790%7Ca.for.137376-138875.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.137376-138875.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.137376-138875.Ar_EST_120301b_rep_c5790%7Ca.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig310%7Cheat.for.135898-138850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.135898-138850.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.135898-138850.120301b_Contig310%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12450%7C---NA---.for.138995-140087.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.138995-140087.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.138995-140087.Ar_EST_120301b_c12450%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7908%7Cdomain-containing.for.141024-142430.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.141024-142430.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.141024-142430.Ar_EST_120301b_c7908%7Cdomain-containing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7834%7Cg-protein.for.142400-144309.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142400-144309.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142400-144309.Ar_EST_120301b_c7834%7Cg-protein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19743%7Cguanine.for.143080-144247.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.143080-144247.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.143080-144247.Ar_EST_120301b_c19743%7Cguanine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13715%7Cglycoprotein.for.144427-145703.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.144427-145703.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.144427-145703.Ar_EST_120301b_rep_c13715%7Cglycoprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10950%7Cdna.for.146053-147455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.146053-147455.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.146053-147455.Ar_EST_120301b_c10950%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14111%7Cdna.for.146865-148324.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.146865-148324.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.146865-148324.Ar_EST_120301b_c14111%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig531%7Cprotein.for.147650-149098.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.147650-149098.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.147650-149098.120301b_Contig531%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig634%7Ccr529494.for.150372-151811.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.150372-151811.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.150372-151811.120301b_Contig634%7Ccr529494.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7634%7Ccr529494.for.150541-151631.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.150541-151631.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.150541-151631.Ar_EST_120301b_rep_c7634%7Ccr529494.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7240%7Ccr529494.for.150235-151891.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.150235-151891.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.150235-151891.Ar_EST_120301b_rep_c7240%7Ccr529494.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9367%7C---NA---.for.152138-153239.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.152138-153239.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.152138-153239.Ar_EST_120301b_c9367%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16367%7C4-hydroxyphenylpyruvate.for.153226-154544.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.153226-154544.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.153226-154544.Ar_EST_120301b_c16367%7C4-hydroxyphenylpyruvate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c854%7C4-hydroxyphenylpyruvate.for.152627-154115.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.152627-154115.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.152627-154115.Ar_EST_120301b_c854%7C4-hydroxyphenylpyruvate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6215%7Crna.for.159799-161632.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.159799-161632.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.159799-161632.Ar_EST_120301b_rep_c6215%7Crna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5579%7Crna.for.159768-161642.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.159768-161642.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.159768-161642.Ar_EST_120301b_rep_c5579%7Crna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14244%7Crna.for.160284-161614.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.160284-161614.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.160284-161614.Ar_EST_120301b_rep_c14244%7Crna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10333%7Cacyl-.for.159869-161044.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.159869-161044.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.159869-161044.Ar_EST_120301b_c10333%7Cacyl-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1371%7Crac.for.167294-169987.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.167294-169987.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.167294-169987.120301b_Contig1371%7Crac.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17331%7Cnedd8.for.167035-168118.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.167035-168118.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.167035-168118.Ar_EST_120301b_c17331%7Cnedd8.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10519%7Cest.for.169349-170698.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.169349-170698.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.169349-170698.Ar_EST_120301b_c10519%7Cest.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4191%7Csuccinyl-.for.170904-172812.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.170904-172812.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.170904-172812.Ar_EST_120301b_rep_c4191%7Csuccinyl-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4684%7Cmeloidogyne.for.172079-173713.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.172079-173713.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.172079-173713.Ar_EST_120301b_rep_c4684%7Cmeloidogyne.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15717%7Culva.for.172475-173715.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.172475-173715.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.172475-173715.Ar_EST_120301b_rep_c15717%7Culva.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9614%7Ccohesin.for.182031-184093.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.182031-184093.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.182031-184093.Ar_EST_120301b_c9614%7Ccohesin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17764%7C---NA---.for.183901-185011.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.183901-185011.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.183901-185011.Ar_EST_120301b_c17764%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1778%7Chypothetical.for.183763-185094.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.183763-185094.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.183763-185094.Ar_EST_120301b_c1778%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14507%7Chypothetical.for.184948-186185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.184948-186185.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.184948-186185.Ar_EST_120301b_c14507%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9088%7Cdiguanylate.for.185779-187336.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.185779-187336.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.185779-187336.Ar_EST_120301b_c9088%7Cdiguanylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1730%7Cleucine-rich.for.188767-190142.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.188767-190142.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.188767-190142.Ar_EST_120301b_c1730%7Cleucine-rich.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3669%7Ccentrosome-.for.189857-191499.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.189857-191499.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.189857-191499.Ar_EST_120301b_c3669%7Ccentrosome-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14832%7C---NA---.for.190095-191135.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.190095-191135.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.190095-191135.Ar_EST_120301b_rep_c14832%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15417%7Chypothetical.for.189764-191335.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.189764-191335.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.189764-191335.Ar_EST_120301b_c15417%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9815%7Cpre-mrna-splicing.for.191755-193413.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.191755-193413.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.191755-193413.Ar_EST_120301b_c9815%7Cpre-mrna-splicing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2402%7Calpha-l-glutamate.for.192780-194621.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.192780-194621.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.192780-194621.Ar_EST_120301b_c2402%7Calpha-l-glutamate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2515%7Cfq080129.for.200643-201890.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.200643-201890.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.200643-201890.Ar_EST_120301b_c2515%7Cfq080129.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16244%7Cpredicted.for.203700-205068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.203700-205068.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.203700-205068.Ar_EST_120301b_c16244%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig564%7Calg-2.for.204341-206843.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204341-206843.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204341-206843.120301b_Contig564%7Calg-2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16467%7Cfr764264.for.204297-205408.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204297-205408.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204297-205408.Ar_EST_120301b_rep_c16467%7Cfr764264.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19160%7Crho.for.204343-205515.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204343-205515.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204343-205515.Ar_EST_120301b_rep_c19160%7Crho.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig577%7Calg-2.for.204322-207530.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204322-207530.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204322-207530.120301b_Contig577%7Calg-2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig646%7C3-hydroxyisobutyrate.for.210928-212168.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.210928-212168.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.210928-212168.120301b_Contig646%7C3-hydroxyisobutyrate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7959%7C3-hydroxyisobutyrate.for.210928-212620.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.210928-212620.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.210928-212620.Ar_EST_120301b_c7959%7C3-hydroxyisobutyrate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1520%7Cring.for.212862-214368.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.212862-214368.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.212862-214368.Ar_EST_120301b_c1520%7Cring.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17963%7Cribonuclease.for.213718-215087.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.213718-215087.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.213718-215087.Ar_EST_120301b_c17963%7Cribonuclease.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15655%7Chydroxyacylglutathione.for.217920-219067.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.217920-219067.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.217920-219067.Ar_EST_120301b_c15655%7Chydroxyacylglutathione.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1032%7Cbar.for.217720-219194.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.217720-219194.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.217720-219194.Ar_EST_120301b_c1032%7Cbar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3714%7Cpredicted.for.219865-221920.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.219865-221920.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.219865-221920.Ar_EST_120301b_c3714%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9360%7Cpectin.for.222677-223963.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.222677-223963.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.222677-223963.Ar_EST_120301b_c9360%7Cpectin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14957%7C---NA---.for.223737-224678.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.223737-224678.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.223737-224678.Ar_EST_120301b_c14957%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16305%7Ccu718678.for.227564-228814.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.227564-228814.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.227564-228814.Ar_EST_120301b_c16305%7Ccu718678.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15895%7Cgm-c1079.for.231109-232430.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.231109-232430.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.231109-232430.Ar_EST_120301b_c15895%7Cgm-c1079.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15734%7Celectron.for.237011-238483.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.237011-238483.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.237011-238483.Ar_EST_120301b_c15734%7Celectron.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig277%7Celectron-transferring-flavoprotein.for.235927-238334.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.235927-238334.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.235927-238334.120301b_Contig277%7Celectron-transferring-flavoprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14121%7Csme00002039.for.238974-239931.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.238974-239931.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.238974-239931.Ar_EST_120301b_rep_c14121%7Csme00002039.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4568%7Chypothetical.for.238239-240574.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.238239-240574.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.238239-240574.Ar_EST_120301b_rep_c4568%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7127%7Chypothetical.for.238312-239951.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.238312-239951.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.238312-239951.Ar_EST_120301b_rep_c7127%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13716%7Cpossible.for.239125-240151.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.239125-240151.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.239125-240151.Ar_EST_120301b_rep_c13716%7Cpossible.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13710%7C---NA---.for.239844-240691.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.239844-240691.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.239844-240691.Ar_EST_120301b_c13710%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig398%7Cphage.for.240269-242260.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.240269-242260.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.240269-242260.120301b_Contig398%7Cphage.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8397%7Cprotein.for.241758-243744.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.241758-243744.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.241758-243744.Ar_EST_120301b_c8397%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8110%7Clongevity.for.242976-244909.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.242976-244909.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.242976-244909.Ar_EST_120301b_c8110%7Clongevity.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13752%7Ctranscriptional.for.248009-249354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.248009-249354.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.248009-249354.Ar_EST_120301b_rep_c13752%7Ctranscriptional.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15531%7Ctranscriptional.for.247898-249032.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.247898-249032.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.247898-249032.Ar_EST_120301b_c15531%7Ctranscriptional.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1651%7Ctpr.for.248173-249572.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.248173-249572.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.248173-249572.Ar_EST_120301b_c1651%7Ctpr.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c720%7Ctpr.for.247246-248705.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.247246-248705.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.247246-248705.Ar_EST_120301b_c720%7Ctpr.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11668%7Ccce.for.248728-249756.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.248728-249756.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.248728-249756.Ar_EST_120301b_c11668%7Ccce.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17777%7Cfungal.for.249599-250715.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.249599-250715.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.249599-250715.Ar_EST_120301b_c17777%7Cfungal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13808%7Ccls.for.249917-251189.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.249917-251189.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.249917-251189.Ar_EST_120301b_c13808%7Ccls.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 total clusters:97 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:97 now processing 0 total clusters:97 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:89 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:71 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:60 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:85 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:79 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:74 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:70 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:82 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:72 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:83 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089856%7Cgb%7CEFC43511%2E1%7C.for.15123-17086.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.15123-17086.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.15123-17086.gi%7C284089856%7Cgb%7CEFC43511%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094339%7Cgb%7CEFC47973%2E1%7C.for.16848-18751.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.16848-18751.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.16848-18751.gi%7C284094339%7Cgb%7CEFC47973%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088678%7Cgb%7CEFC42340%2E1%7C.for.16848-18457.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.16848-18457.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.16848-18457.gi%7C284088678%7Cgb%7CEFC42340%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094128%7Cgb%7CEFC47763%2E1%7C.for.18785-20125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18785-20125.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18785-20125.gi%7C284094128%7Cgb%7CEFC47763%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093755%7Cgb%7CEFC47392%2E1%7C.for.18785-20125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18785-20125.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18785-20125.gi%7C284093755%7Cgb%7CEFC47392%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084671%7Cgb%7CEFC38361%2E1%7C.for.18785-20125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18785-20125.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18785-20125.gi%7C284084671%7Cgb%7CEFC38361%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087410%7Cgb%7CEFC41080%2E1%7C.for.18821-20125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18821-20125.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18821-20125.gi%7C284087410%7Cgb%7CEFC41080%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095769%7Cgb%7CEFC49399%2E1%7C.for.18767-20125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18767-20125.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18767-20125.gi%7C284095769%7Cgb%7CEFC49399%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088777%7Cgb%7CEFC42438%2E1%7C.for.18821-20125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18821-20125.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18821-20125.gi%7C284088777%7Cgb%7CEFC42438%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096300%7Cgb%7CEFC49928%2E1%7C.for.20271-31022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.20271-31022.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.20271-31022.gi%7C284096300%7Cgb%7CEFC49928%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.for.35827-36896.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.35827-36896.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.35827-36896.gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093627%7Cgb%7CEFC47264%2E1%7C.for.35878-38883.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.35878-38883.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.35878-38883.gi%7C284093627%7Cgb%7CEFC47264%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093553%7Cgb%7CEFC47190%2E1%7C.for.38660-42327.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.38660-42327.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.38660-42327.gi%7C284093553%7Cgb%7CEFC47190%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088699%7Cgb%7CEFC42361%2E1%7C.for.41842-43571.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41842-43571.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41842-43571.gi%7C284088699%7Cgb%7CEFC42361%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093661%7Cgb%7CEFC47298%2E1%7C.for.41803-44573.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41803-44573.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41803-44573.gi%7C284093661%7Cgb%7CEFC47298%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081561%7Cgb%7CEFC35518%2E1%7C.for.41782-43508.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41782-43508.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41782-43508.gi%7C284081561%7Cgb%7CEFC35518%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082242%7Cgb%7CEFC35988%2E1%7C.for.41800-43481.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41800-43481.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41800-43481.gi%7C284082242%7Cgb%7CEFC35988%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088654%7Cgb%7CEFC42316%2E1%7C.for.41833-43508.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41833-43508.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41833-43508.gi%7C284088654%7Cgb%7CEFC42316%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096156%7Cgb%7CEFC49785%2E1%7C.for.41836-43487.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41836-43487.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41836-43487.gi%7C284096156%7Cgb%7CEFC49785%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096936%7Cgb%7CEFC50563%2E1%7C.for.47476-49712.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.47476-49712.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.47476-49712.gi%7C284096936%7Cgb%7CEFC50563%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095549%7Cgb%7CEFC49179%2E1%7C.for.47515-49742.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.47515-49742.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.47515-49742.gi%7C284095549%7Cgb%7CEFC49179%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093648%7Cgb%7CEFC47285%2E1%7C.for.45949-50849.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.45949-50849.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.45949-50849.gi%7C284093648%7Cgb%7CEFC47285%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095906%7Cgb%7CEFC49535%2E1%7C.for.47530-49751.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.47530-49751.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.47530-49751.gi%7C284095906%7Cgb%7CEFC49535%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087958%7Cgb%7CEFC41624%2E1%7C.for.47503-49751.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.47503-49751.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.47503-49751.gi%7C284087958%7Cgb%7CEFC41624%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088520%7Cgb%7CEFC42183%2E1%7C.for.51477-53404.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.51477-53404.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.51477-53404.gi%7C284088520%7Cgb%7CEFC42183%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093550%7Cgb%7CEFC47187%2E1%7C.for.61571-62913.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.61571-62913.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.61571-62913.gi%7C284093550%7Cgb%7CEFC47187%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095323%7Cgb%7CEFC48954%2E1%7C.for.62265-63643.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.62265-63643.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.62265-63643.gi%7C284095323%7Cgb%7CEFC48954%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083272%7Cgb%7CEFC36977%2E1%7C.for.67536-70556.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.67536-70556.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.67536-70556.gi%7C284083272%7Cgb%7CEFC36977%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082602%7Cgb%7CEFC36317%2E1%7C.for.66036-69451.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.66036-69451.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.66036-69451.gi%7C284082602%7Cgb%7CEFC36317%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094585%7Cgb%7CEFC48219%2E1%7C.for.80675-81717.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.80675-81717.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.80675-81717.gi%7C284094585%7Cgb%7CEFC48219%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086165%7Cgb%7CEFC39843%2E1%7C.for.80961-82908.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.80961-82908.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.80961-82908.gi%7C284086165%7Cgb%7CEFC39843%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095450%7Cgb%7CEFC49081%2E1%7C.for.90632-92652.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.90632-92652.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.90632-92652.gi%7C284095450%7Cgb%7CEFC49081%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096532%7Cgb%7CEFC50160%2E1%7C.for.102826-104105.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.102826-104105.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.102826-104105.gi%7C284096532%7Cgb%7CEFC50160%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096604%7Cgb%7CEFC50232%2E1%7C.for.105563-107235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.105563-107235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.105563-107235.gi%7C284096604%7Cgb%7CEFC50232%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081521%7Cgb%7CEFC35491%2E1%7C.for.111090-112204.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.111090-112204.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.111090-112204.gi%7C284081521%7Cgb%7CEFC35491%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084639%7Cgb%7CEFC38329%2E1%7C.for.111030-113400.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.111030-113400.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.111030-113400.gi%7C284084639%7Cgb%7CEFC38329%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085362%7Cgb%7CEFC39046%2E1%7C.for.110985-113445.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.110985-113445.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.110985-113445.gi%7C284085362%7Cgb%7CEFC39046%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083208%7Cgb%7CEFC36914%2E1%7C.for.110076-113538.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.110076-113538.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.110076-113538.gi%7C284083208%7Cgb%7CEFC36914%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094695%7Cgb%7CEFC48328%2E1%7C.for.118409-122010.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.118409-122010.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.118409-122010.gi%7C284094695%7Cgb%7CEFC48328%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095109%7Cgb%7CEFC48741%2E1%7C.for.132648-134686.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.132648-134686.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.132648-134686.gi%7C284095109%7Cgb%7CEFC48741%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086161%7Cgb%7CEFC39839%2E1%7C.for.135931-138842.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.135931-138842.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.135931-138842.gi%7C284086161%7Cgb%7CEFC39839%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096519%7Cgb%7CEFC50147%2E1%7C.for.136030-138848.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.136030-138848.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.136030-138848.gi%7C284096519%7Cgb%7CEFC50147%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096247%7Cgb%7CEFC49875%2E1%7C.for.135931-138797.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.135931-138797.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.135931-138797.gi%7C284096247%7Cgb%7CEFC49875%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C25986841%7Cgb%7CAAM93756%2E1%7C.for.136051-138770.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.136051-138770.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.136051-138770.gi%7C25986841%7Cgb%7CAAM93756%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092652%7Cgb%7CEFC46293%2E1%7C.for.142341-144069.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142341-144069.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142341-144069.gi%7C284092652%7Cgb%7CEFC46293%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089938%7Cgb%7CEFC43592%2E1%7C.for.142602-143862.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142602-143862.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142602-143862.gi%7C284089938%7Cgb%7CEFC43592%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083518%7Cgb%7CEFC37220%2E1%7C.for.142308-144015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142308-144015.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142308-144015.gi%7C284083518%7Cgb%7CEFC37220%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095980%7Cgb%7CEFC49609%2E1%7C.for.142347-144039.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142347-144039.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142347-144039.gi%7C284095980%7Cgb%7CEFC49609%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091782%7Cgb%7CEFC45427%2E1%7C.for.142755-143961.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142755-143961.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142755-143961.gi%7C284091782%7Cgb%7CEFC45427%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085503%7Cgb%7CEFC39186%2E1%7C.for.142329-143964.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142329-143964.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142329-143964.gi%7C284085503%7Cgb%7CEFC39186%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093388%7Cgb%7CEFC47026%2E1%7C.for.142922-143862.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142922-143862.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142922-143862.gi%7C284093388%7Cgb%7CEFC47026%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095754%7Cgb%7CEFC49384%2E1%7C.for.142329-144069.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142329-144069.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142329-144069.gi%7C284095754%7Cgb%7CEFC49384%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096149%7Cgb%7CEFC49778%2E1%7C.for.144795-148300.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.144795-148300.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.144795-148300.gi%7C284096149%7Cgb%7CEFC49778%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C167966176%7Cgb%7CACA13169%2E1%7C.for.146940-147964.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.146940-147964.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.146940-147964.gi%7C167966176%7Cgb%7CACA13169%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092877%7Cgb%7CEFC46517%2E1%7C.for.147667-149081.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.147667-149081.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.147667-149081.gi%7C284092877%7Cgb%7CEFC46517%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092102%7Cgb%7CEFC45745%2E1%7C.for.152591-154551.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.152591-154551.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.152591-154551.gi%7C284092102%7Cgb%7CEFC45745%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096560%7Cgb%7CEFC50188%2E1%7C.for.157271-160187.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.157271-160187.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.157271-160187.gi%7C284096560%7Cgb%7CEFC50188%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097079%7Cgb%7CEFC50706%2E1%7C.for.170945-172743.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.170945-172743.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.170945-172743.gi%7C284097079%7Cgb%7CEFC50706%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080983%7Cgb%7CEFC35253%2E1%7C.for.186873-188374.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.186873-188374.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.186873-188374.gi%7C284080983%7Cgb%7CEFC35253%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081870%7Cgb%7CEFC35710%2E1%7C.for.187245-188218.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.187245-188218.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.187245-188218.gi%7C284081870%7Cgb%7CEFC35710%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096419%7Cgb%7CEFC50047%2E1%7C.for.187029-188311.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.187029-188311.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.187029-188311.gi%7C284096419%7Cgb%7CEFC50047%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084263%7Cgb%7CEFC37957%2E1%7C.for.187056-188302.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.187056-188302.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.187056-188302.gi%7C284084263%7Cgb%7CEFC37957%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090976%7Cgb%7CEFC44625%2E1%7C.for.186795-188311.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.186795-188311.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.186795-188311.gi%7C284090976%7Cgb%7CEFC44625%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082158%7Cgb%7CEFC35924%2E1%7C.for.186795-188311.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.186795-188311.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.186795-188311.gi%7C284082158%7Cgb%7CEFC35924%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094671%7Cgb%7CEFC48304%2E1%7C.for.186999-188311.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.186999-188311.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.186999-188311.gi%7C284094671%7Cgb%7CEFC48304%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086669%7Cgb%7CEFC40344%2E1%7C.for.187257-188377.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.187257-188377.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.187257-188377.gi%7C284086669%7Cgb%7CEFC40344%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084731%7Cgb%7CEFC38420%2E1%7C.for.188731-189859.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.188731-189859.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.188731-189859.gi%7C284084731%7Cgb%7CEFC38420%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091151%7Cgb%7CEFC44799%2E1%7C.for.188758-189922.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.188758-189922.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.188758-189922.gi%7C284091151%7Cgb%7CEFC44799%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092335%7Cgb%7CEFC45977%2E1%7C.for.189761-191601.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.189761-191601.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.189761-191601.gi%7C284092335%7Cgb%7CEFC45977%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084895%7Cgb%7CEFC38583%2E1%7C.for.192664-194631.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.192664-194631.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.192664-194631.gi%7C284084895%7Cgb%7CEFC38583%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084844%7Cgb%7CEFC38533%2E1%7C.for.192772-194592.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.192772-194592.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.192772-194592.gi%7C284084844%7Cgb%7CEFC38533%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096999%7Cgb%7CEFC50626%2E1%7C.for.195482-197340.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.195482-197340.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.195482-197340.gi%7C284096999%7Cgb%7CEFC50626%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090525%7Cgb%7CEFC44176%2E1%7C.for.204484-207515.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204484-207515.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204484-207515.gi%7C284090525%7Cgb%7CEFC44176%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092835%7Cgb%7CEFC46475%2E1%7C.for.206884-208643.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.206884-208643.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.206884-208643.gi%7C284092835%7Cgb%7CEFC46475%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087254%7Cgb%7CEFC40925%2E1%7C.for.206881-208613.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.206881-208613.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.206881-208613.gi%7C284087254%7Cgb%7CEFC40925%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082482%7Cgb%7CEFC36199%2E1%7C.for.210915-212620.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.210915-212620.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.210915-212620.gi%7C284082482%7Cgb%7CEFC36199%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080970%7Cgb%7CEFC35250%2E1%7C.for.226686-227677.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.226686-227677.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.226686-227677.gi%7C284080970%7Cgb%7CEFC35250%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092584%7Cgb%7CEFC46225%2E1%7C.for.228372-230302.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.228372-230302.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.228372-230302.gi%7C284092584%7Cgb%7CEFC46225%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092876%7Cgb%7CEFC46516%2E1%7C.for.235910-238395.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.235910-238395.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.235910-238395.gi%7C284092876%7Cgb%7CEFC46516%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091153%7Cgb%7CEFC44801%2E1%7C.for.241641-243023.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.241641-243023.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.241641-243023.gi%7C284091153%7Cgb%7CEFC44801%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090946%7Cgb%7CEFC44595%2E1%7C.for.241626-243062.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.241626-243062.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.241626-243062.gi%7C284090946%7Cgb%7CEFC44595%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092322%7Cgb%7CEFC45964%2E1%7C.for.241596-243501.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.241596-243501.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.241596-243501.gi%7C284092322%7Cgb%7CEFC45964%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083025%7Cgb%7CEFC36733%2E1%7C.for.244560-245581.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.244560-245581.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.244560-245581.gi%7C284083025%7Cgb%7CEFC36733%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093562%7Cgb%7CEFC47199%2E1%7C.for.244548-245870.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.244548-245870.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.244548-245870.gi%7C284093562%7Cgb%7CEFC47199%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091741%7Cgb%7CEFC45386%2E1%7C.for.244509-245861.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.244509-245861.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.244509-245861.gi%7C284091741%7Cgb%7CEFC45386%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092533%7Cgb%7CEFC46175%2E1%7C.for.247335-249267.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.247335-249267.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.247335-249267.gi%7C284092533%7Cgb%7CEFC46175%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:36 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:29 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 2 ...processing 1 of 2 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:50 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:50 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:50 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:50 now processing 0 total clusters:50 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:50 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:50 now processing 0 total clusters:50 now processing 0 total clusters:50 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:50 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:50 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:59 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:59 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:59 now processing 0 total clusters:59 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:59 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.9352-10168.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.9352-10168.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.9352-10168.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.14463-15372.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.14463-15372.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.14463-15372.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.18981-32275.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.18981-32275.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.18981-32275.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.38696-44373.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.38696-44373.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.38696-44373.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.46148-51894.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.46148-51894.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.46148-51894.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.61731-63443.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.61731-63443.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.61731-63443.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.70279-71363.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.70279-71363.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.70279-71363.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.80874-81517.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.80874-81517.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.80874-81517.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.86239-87767.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.86239-87767.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.86239-87767.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.90388-93132.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.90388-93132.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.90388-93132.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.99226-100492.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.99226-100492.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.99226-100492.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.103005-107100.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.103005-107100.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.103005-107100.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.108829-109885.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.108829-109885.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.108829-109885.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.116023-117455.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.116023-117455.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.116023-117455.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.142507-144109.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.142507-144109.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.142507-144109.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.146252-148124.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.146252-148124.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.146252-148124.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.150432-151691.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.150432-151691.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.150432-151691.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.152337-154351.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.152337-154351.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.152337-154351.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.167493-169791.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.167493-169791.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.167493-169791.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.183953-188177.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.183953-188177.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.183953-188177.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.189960-191401.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.189960-191401.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.189960-191401.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.195681-197140.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.195681-197140.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.195681-197140.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.203899-204868.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.203899-204868.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.203899-204868.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.213061-214168.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.213061-214168.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.213061-214168.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.217919-218994.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.217919-218994.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.217919-218994.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.222876-224478.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.222876-224478.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.222876-224478.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.228571-230102.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.228571-230102.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.228571-230102.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.231305-232448.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.231305-232448.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.231305-232448.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.238438-243544.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.238438-243544.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.238438-243544.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.247385-250515.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.247385-250515.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.247385-250515.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.6536-7536.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.6536-7536.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.6536-7536.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.10977-13017.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.10977-13017.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.10977-13017.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.13115-14844.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.13115-14844.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.13115-14844.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.17047-18257.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.17047-18257.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.17047-18257.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.32275-34205.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.32275-34205.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.32275-34205.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.36077-38683.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.36077-38683.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.36077-38683.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.51937-57153.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.51937-57153.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.51937-57153.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.57523-59134.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.57523-59134.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.57523-59134.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.60008-61695.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.60008-61695.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.60008-61695.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.63036-64109.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.63036-64109.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.63036-64109.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/40_0.66235-70356.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/40_0.66235-70356.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/40_0.66235-70356.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/41_0.71031-71995.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/41_0.71031-71995.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/41_0.71031-71995.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/42_0.72195-73370.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/42_0.72195-73370.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/42_0.72195-73370.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/43_0.74091-78667.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/43_0.74091-78667.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/43_0.74091-78667.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/44_0.81127-82903.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/44_0.81127-82903.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/44_0.81127-82903.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/45_0.85294-86152.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/45_0.85294-86152.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/45_0.85294-86152.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/46_0.87986-88898.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/46_0.87986-88898.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/46_0.87986-88898.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/47_0.93752-95344.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/47_0.93752-95344.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/47_0.93752-95344.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/48_0.110275-115655.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/48_0.110275-115655.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/48_0.110275-115655.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/49_0.118582-121986.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/49_0.118582-121986.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/49_0.118582-121986.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/50_0.122183-131308.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/50_0.122183-131308.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/50_0.122183-131308.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/51_0.132669-135499.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/51_0.132669-135499.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/51_0.132669-135499.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/52_0.136097-138682.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/52_0.136097-138682.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/52_0.136097-138682.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/53_0.141223-142230.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/53_0.141223-142230.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/53_0.141223-142230.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/54_0.147866-148881.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/54_0.147866-148881.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/54_0.147866-148881.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/55_0.157470-159987.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/55_0.157470-159987.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/55_0.157470-159987.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/56_0.159998-161432.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/56_0.159998-161432.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/56_0.159998-161432.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/57_0.167005-167926.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/57_0.167005-167926.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/57_0.167005-167926.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/58_0.169548-170498.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/58_0.169548-170498.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/58_0.169548-170498.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/59_0.171144-172543.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/59_0.171144-172543.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/59_0.171144-172543.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/60_0.188930-189942.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/60_0.188930-189942.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/60_0.188930-189942.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/61_0.191954-194431.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/61_0.191954-194431.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/61_0.191954-194431.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/62_0.200842-201690.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/62_0.200842-201690.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/62_0.200842-201690.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/63_0.204518-208443.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/63_0.204518-208443.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/63_0.204518-208443.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/64_0.211114-212420.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/64_0.211114-212420.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/64_0.211114-212420.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/65_0.213914-214887.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/65_0.213914-214887.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/65_0.213914-214887.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/66_0.220064-221720.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/66_0.220064-221720.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/66_0.220064-221720.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/67_0.227763-228614.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/67_0.227763-228614.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/67_0.227763-228614.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/68_0.236109-238283.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/68_0.236109-238283.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/68_0.236109-238283.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/69_0.243175-245670.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/69_0.243175-245670.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/69_0.243175-245670.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/70_0.250116-250989.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/70_0.250116-250989.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/70_0.250116-250989.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C24 Length: 107845 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:2 current j:0 j_size:2 current j:1 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C24.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C24.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:6 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1193%7Clate.for.1-1367.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.1-1367.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.1-1367.120301b_Contig1193%7Clate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3787%7Clate.for.1-1517.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.1-1517.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.1-1517.Ar_EST_120301b_c3787%7Clate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14331%7Ccls.for.3201-4608.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.3201-4608.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.3201-4608.Ar_EST_120301b_c14331%7Ccls.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14231%7Cprotein.for.4815-6119.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.4815-6119.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.4815-6119.Ar_EST_120301b_c14231%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18348%7Ccll.for.14932-16445.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.14932-16445.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.14932-16445.Ar_EST_120301b_c18348%7Ccll.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19847%7Cgpi.for.16578-18442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.16578-18442.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.16578-18442.Ar_EST_120301b_c19847%7Cgpi.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11791%7Cgpi.for.17765-19120.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.17765-19120.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.17765-19120.Ar_EST_120301b_c11791%7Cgpi.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15639%7Ceb3rody02gk4bl.for.23474-26040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.23474-26040.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.23474-26040.Ar_EST_120301b_c15639%7Ceb3rody02gk4bl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1030%7Cprotein.for.23403-26040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.23403-26040.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.23403-26040.Ar_EST_120301b_c1030%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17732%7Cest_ssal_evd_45206.for.26353-27684.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.26353-27684.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.26353-27684.Ar_EST_120301b_c17732%7Cest_ssal_evd_45206.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18177%7Chx195251.for.28612-29656.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.28612-29656.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.28612-29656.Ar_EST_120301b_c18177%7Chx195251.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12724%7Cu4.for.34991-36090.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.34991-36090.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.34991-36090.Ar_EST_120301b_c12724%7Cu4.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8833%7Cprotein.for.35163-36584.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.35163-36584.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.35163-36584.Ar_EST_120301b_c8833%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13085%7C255376557.for.38544-39869.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.38544-39869.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.38544-39869.Ar_EST_120301b_c13085%7C255376557.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3699%7Ctpr.for.41370-43105.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.41370-43105.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.41370-43105.Ar_EST_120301b_c3699%7Ctpr.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c505%7Ccytochrome.for.42948-44200.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.42948-44200.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.42948-44200.Ar_EST_120301b_c505%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15493%7Chypothetical.for.49628-50870.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.49628-50870.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.49628-50870.Ar_EST_120301b_c15493%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2223%7C3-hydroxyisobutyryl-.for.50334-51728.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.50334-51728.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.50334-51728.Ar_EST_120301b_c2223%7C3-hydroxyisobutyryl-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13348%7C---NA---.for.50969-52069.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.50969-52069.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.50969-52069.Ar_EST_120301b_c13348%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8134%7CPJ1444.for.51579-53657.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.51579-53657.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.51579-53657.Ar_EST_120301b_c8134%7CPJ1444.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18835%7C---NA---.for.53933-55329.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.53933-55329.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.53933-55329.Ar_EST_120301b_c18835%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7681%7Ccell.for.53935-55251.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.53935-55251.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.53935-55251.Ar_EST_120301b_rep_c7681%7Ccell.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20521%7C---NA---.for.53935-55086.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.53935-55086.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.53935-55086.Ar_EST_120301b_rep_c20521%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13477%7C---NA---.for.56717-57809.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.56717-57809.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.56717-57809.Ar_EST_120301b_c13477%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7315%7Coxysterol-binding.for.57696-59731.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.57696-59731.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.57696-59731.Ar_EST_120301b_rep_c7315%7Coxysterol-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7217%7Coxysterol-binding.for.57465-59619.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.57465-59619.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.57465-59619.Ar_EST_120301b_rep_c7217%7Coxysterol-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7183%7Coxysterol-binding.for.57606-59167.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.57606-59167.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.57606-59167.Ar_EST_120301b_rep_c7183%7Coxysterol-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7334%7Coxysterol.for.58089-59443.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.58089-59443.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.58089-59443.Ar_EST_120301b_rep_c7334%7Coxysterol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12557%7Cfm132192.for.59433-60491.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.59433-60491.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.59433-60491.Ar_EST_120301b_c12557%7Cfm132192.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18461%7Cbactericidal.for.63637-65201.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.63637-65201.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.63637-65201.Ar_EST_120301b_c18461%7Cbactericidal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9729%7Cmucin-.for.66148-67658.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.66148-67658.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.66148-67658.Ar_EST_120301b_c9729%7Cmucin-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9330%7Cuvb-resistance.for.68944-70534.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.68944-70534.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.68944-70534.Ar_EST_120301b_c9330%7Cuvb-resistance.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10894%7Cdomain-containing.for.71789-72913.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.71789-72913.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.71789-72913.Ar_EST_120301b_c10894%7Cdomain-containing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3071%7Cdomain-containing.for.70951-72815.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.70951-72815.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.70951-72815.Ar_EST_120301b_c3071%7Cdomain-containing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8995%7Cdomain-containing.for.72568-74088.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.72568-74088.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.72568-74088.Ar_EST_120301b_c8995%7Cdomain-containing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3896%7Csenescence-associated.for.72282-73682.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.72282-73682.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.72282-73682.Ar_EST_120301b_c3896%7Csenescence-associated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1150%7Caara_dicdi.for.73122-74881.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.73122-74881.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.73122-74881.Ar_EST_120301b_c1150%7Caara_dicdi.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9186%7C40s.for.76695-77870.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.76695-77870.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.76695-77870.Ar_EST_120301b_rep_c9186%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1960%7Cmeloidogyne.for.78849-80178.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.78849-80178.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.78849-80178.Ar_EST_120301b_c1960%7Cmeloidogyne.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10660%7Canolis.for.79275-80557.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.79275-80557.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.79275-80557.Ar_EST_120301b_c10660%7Canolis.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16062%7Cmitochondrial.for.79842-81299.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.79842-81299.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.79842-81299.Ar_EST_120301b_c16062%7Cmitochondrial.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18366%7C---NA---.for.81065-82374.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.81065-82374.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.81065-82374.Ar_EST_120301b_c18366%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8209%7Cudp-glucose.for.82553-83976.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.82553-83976.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.82553-83976.Ar_EST_120301b_c8209%7Cudp-glucose.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19592%7Cudp-glucose.for.82194-83523.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.82194-83523.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.82194-83523.Ar_EST_120301b_c19592%7Cudp-glucose.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c201%7Cperoxidase.for.89062-90517.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.89062-90517.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.89062-90517.Ar_EST_120301b_c201%7Cperoxidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14840%7Cankyrin.for.90146-91704.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.90146-91704.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.90146-91704.Ar_EST_120301b_c14840%7Cankyrin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17608%7Chydroxycinnamoyl-coenzyme.for.91385-92665.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.91385-92665.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.91385-92665.Ar_EST_120301b_c17608%7Chydroxycinnamoyl-coenzyme.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1727%7Cprotein.for.93442-94838.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.93442-94838.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.93442-94838.Ar_EST_120301b_c1727%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12096%7Cbj057728.for.94158-95401.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.94158-95401.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.94158-95401.Ar_EST_120301b_c12096%7Cbj057728.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2186%7C03ju.for.94951-96270.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.94951-96270.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.94951-96270.Ar_EST_120301b_c2186%7C03ju.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig59%7Cprotein.for.96335-98895.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.96335-98895.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.96335-98895.120301b_Contig59%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1249%7Ctype.for.100365-101735.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.100365-101735.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.100365-101735.Ar_EST_120301b_c1249%7Ctype.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6838%7Cchaperone.for.99052-100777.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.99052-100777.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.99052-100777.Ar_EST_120301b_rep_c6838%7Cchaperone.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig246%7Cprotein.for.98366-101485.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.98366-101485.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.98366-101485.120301b_Contig246%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10371%7Cviral.for.101874-103650.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.101874-103650.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.101874-103650.Ar_EST_120301b_c10371%7Cviral.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1846%7Ccu580856.for.103580-104910.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.103580-104910.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.103580-104910.Ar_EST_120301b_c1846%7Ccu580856.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10785%7C---NA---.for.105911-107157.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.105911-107157.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.105911-107157.Ar_EST_120301b_c10785%7C---NA---.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:34 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:27 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:43 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:50 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:49 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:39 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:32 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:42 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:38 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:19 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093049%7Cgb%7CEFC46688%2E1%7C.for.16805-18843.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.16805-18843.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.16805-18843.gi%7C284093049%7Cgb%7CEFC46688%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082549%7Cgb%7CEFC36265%2E1%7C.for.18864-20806.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.18864-20806.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.18864-20806.gi%7C284082549%7Cgb%7CEFC36265%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.30087-33385.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33385.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33385.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.for.30099-33343.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33343.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33343.gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.for.30105-33424.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30105-33424.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30105-33424.gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085983%7Cgb%7CEFC39663%2E1%7C.for.30096-33337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30096-33337.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30096-33337.gi%7C284085983%7Cgb%7CEFC39663%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.for.30099-33337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33337.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33337.gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.for.30102-33373.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33373.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33373.gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.for.30099-32320.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-32320.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-32320.gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088147%7Cgb%7CEFC41812%2E1%7C.for.30102-33343.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33343.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33343.gi%7C284088147%7Cgb%7CEFC41812%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.for.30102-33400.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33400.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33400.gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.for.30093-33382.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30093-33382.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30093-33382.gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.for.30087-33394.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33394.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33394.gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.for.30105-33337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30105-33337.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30105-33337.gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.for.30087-33346.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33346.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33346.gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082687%7Cgb%7CEFC36400%2E1%7C.for.30087-33403.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33403.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33403.gi%7C284082687%7Cgb%7CEFC36400%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091293%7Cgb%7CEFC44940%2E1%7C.for.30090-33337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30090-33337.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30090-33337.gi%7C284091293%7Cgb%7CEFC44940%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.for.30093-33346.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30093-33346.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30093-33346.gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.for.30099-33343.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33343.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33343.gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097002%7Cgb%7CEFC50629%2E1%7C.for.30096-33394.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30096-33394.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30096-33394.gi%7C284097002%7Cgb%7CEFC50629%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.for.30099-33469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33469.gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092908%7Cgb%7CEFC46548%2E1%7C.for.30099-33346.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33346.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33346.gi%7C284092908%7Cgb%7CEFC46548%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.for.30099-33403.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33403.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33403.gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.for.30072-33400.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30072-33400.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30072-33400.gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.for.30048-33337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30048-33337.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30048-33337.gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094023%7Cgb%7CEFC47658%2E1%7C.for.29985-33346.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.29985-33346.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.29985-33346.gi%7C284094023%7Cgb%7CEFC47658%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.for.30102-33343.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33343.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33343.gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.for.30105-31525.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30105-31525.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30105-31525.gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092204%7Cgb%7CEFC45847%2E1%7C.for.30099-33394.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33394.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33394.gi%7C284092204%7Cgb%7CEFC45847%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.for.30099-33337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33337.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33337.gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081757%7Cgb%7CEFC35637%2E1%7C.for.30099-33409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33409.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33409.gi%7C284081757%7Cgb%7CEFC35637%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.for.30042-33352.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30042-33352.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30042-33352.gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.for.30102-33340.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33340.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33340.gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.for.30015-32359.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30015-32359.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30015-32359.gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085299%7Cgb%7CEFC38984%2E1%7C.for.30087-33346.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33346.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33346.gi%7C284085299%7Cgb%7CEFC38984%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087676%7Cgb%7CEFC41344%2E1%7C.for.30093-33430.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30093-33430.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30093-33430.gi%7C284087676%7Cgb%7CEFC41344%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080808%7Cgb%7CEFC35194%2E1%7C.for.30102-33337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33337.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33337.gi%7C284080808%7Cgb%7CEFC35194%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.for.30132-32341.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30132-32341.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30132-32341.gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091375%7Cgb%7CEFC45022%2E1%7C.for.39920-41115.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.39920-41115.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.39920-41115.gi%7C284091375%7Cgb%7CEFC45022%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087092%7Cgb%7CEFC40764%2E1%7C.for.39695-41100.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.39695-41100.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.39695-41100.gi%7C284087092%7Cgb%7CEFC40764%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089341%7Cgb%7CEFC42999%2E1%7C.for.43545-45547.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.43545-45547.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.43545-45547.gi%7C284089341%7Cgb%7CEFC42999%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092455%7Cgb%7CEFC46097%2E1%7C.for.43533-45508.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.43533-45508.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.43533-45508.gi%7C284092455%7Cgb%7CEFC46097%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087860%7Cgb%7CEFC41527%2E1%7C.for.44061-45661.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.44061-45661.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.44061-45661.gi%7C284087860%7Cgb%7CEFC41527%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092586%7Cgb%7CEFC46227%2E1%7C.for.65301-66295.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.65301-66295.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.65301-66295.gi%7C284092586%7Cgb%7CEFC46227%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091528%7Cgb%7CEFC45174%2E1%7C.for.76723-77714.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.76723-77714.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.76723-77714.gi%7C284091528%7Cgb%7CEFC45174%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087484%7Cgb%7CEFC41153%2E1%7C.for.79834-81594.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.79834-81594.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.79834-81594.gi%7C284087484%7Cgb%7CEFC41153%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:8 now processing 0 total clusters:8 now processing 0 total clusters:8 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:8 now processing 0 total clusters:8 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:8 now processing 0 total clusters:8 now processing 0 total clusters:8 now processing 0 in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:5 now processing 0 total clusters:5 now processing 0 ...processing 0 of 24 ...processing 1 of 24 ...processing 2 of 24 ...processing 3 of 24 ...processing 4 of 24 ...processing 5 of 24 ...processing 6 of 24 ...processing 7 of 24 ...processing 8 of 24 ...processing 9 of 24 ...processing 10 of 24 ...processing 11 of 24 ...processing 12 of 24 ...processing 13 of 24 ...processing 14 of 24 ...processing 15 of 24 ...processing 16 of 24 ...processing 17 of 24 ...processing 18 of 24 ...processing 19 of 24 ...processing 20 of 24 ...processing 21 of 24 ...processing 22 of 24 ...processing 23 of 24 total clusters:5 now processing 0 total clusters:5 now processing 0 total clusters:5 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:17 now processing 0 total clusters:17 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 19 ...processing 1 of 19 ...processing 2 of 19 ...processing 3 of 19 ...processing 4 of 19 ...processing 5 of 19 ...processing 6 of 19 ...processing 7 of 19 ...processing 8 of 19 ...processing 9 of 19 ...processing 10 of 19 ...processing 11 of 19 ...processing 12 of 19 ...processing 13 of 19 ...processing 14 of 19 ...processing 15 of 19 ...processing 16 of 19 ...processing 17 of 19 ...processing 18 of 19 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.15131-16245.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.15131-16245.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.15131-16245.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.26552-27484.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.26552-27484.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.26552-27484.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.28610-29472.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.28610-29472.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.28610-29472.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.38743-39674.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.38743-39674.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.38743-39674.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.41556-42905.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.41556-42905.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.41556-42905.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.43142-44000.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.43142-44000.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.43142-44000.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.57628-59531.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.57628-59531.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.57628-59531.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.63821-65003.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.63821-65003.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.63821-65003.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.79048-80363.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.79048-80363.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.79048-80363.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.81264-82174.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.81264-82174.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.81264-82174.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.82393-83776.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.82393-83776.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.82393-83776.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.89253-90332.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.89253-90332.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.89253-90332.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.93641-94643.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.93641-94643.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.93641-94643.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.95103-96070.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.95103-96070.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.95103-96070.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.98565-101535.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.98565-101535.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.98565-101535.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.102073-103452.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.102073-103452.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.102073-103452.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.106110-106962.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.106110-106962.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.106110-106962.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.0-1317.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.0-1317.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.0-1317.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.3400-5919.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.3400-5919.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.3400-5919.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.16775-18643.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.16775-18643.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.16775-18643.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.19063-20606.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.19063-20606.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.19063-20606.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.23602-24576.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.23602-24576.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.23602-24576.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.30214-33224.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.30214-33224.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.30214-33224.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.35162-36384.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.35162-36384.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.35162-36384.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.40119-40915.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.40119-40915.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.40119-40915.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.43732-45461.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.43732-45461.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.43732-45461.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.49827-53513.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.49827-53513.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.49827-53513.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.54132-55129.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.54132-55129.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.54132-55129.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.56916-57609.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.56916-57609.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.56916-57609.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.59632-60457.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.59632-60457.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.59632-60457.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.65500-66095.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.65500-66095.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.65500-66095.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.66347-67458.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.66347-67458.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.66347-67458.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.69135-70334.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.69135-70334.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.69135-70334.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.71150-74681.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.71150-74681.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.71150-74681.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.76922-77514.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.76922-77514.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.76922-77514.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.80033-81394.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.80033-81394.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.80033-81394.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.90345-91504.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.90345-91504.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.90345-91504.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.91584-92465.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.91584-92465.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.91584-92465.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.103777-104710.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.103777-104710.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.103777-104710.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C25 Length: 12557 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:1 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C25.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C25.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12213%7Cserum.for.4686-6013.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.4686-6013.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.4686-6013.Ar_EST_120301b_c12213%7Cserum.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13871%7Cserum.for.4474-5739.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.4474-5739.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.4474-5739.Ar_EST_120301b_c13871%7Cserum.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16373%7Cserum.for.4474-6013.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.4474-6013.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.4474-6013.Ar_EST_120301b_c16373%7Cserum.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17460%7Cpredicted.for.7767-9114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.7767-9114.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.7767-9114.Ar_EST_120301b_c17460%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12919%7Cca48en0002_i.for.8552-9892.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.8552-9892.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.8552-9892.Ar_EST_120301b_c12919%7Cca48en0002_i.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2764%7Cnadh.for.11528-12557.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.11528-12557.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.11528-12557.Ar_EST_120301b_c2764%7Cnadh.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:5 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:5 now processing 0 total clusters:5 now processing 0 total clusters:5 now processing 0 total clusters:5 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:7 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:10 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:5 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:9 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:6 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:14 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:12 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:10 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:5 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:8 hits collecting blastx reports polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091972%7Cgb%7CEFC45616%2E1%7C.for.5442-6683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.5442-6683.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.5442-6683.gi%7C284091972%7Cgb%7CEFC45616%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:4 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:4 now processing 0 total clusters:4 now processing 0 total clusters:4 now processing 0 in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:1 now processing 0 annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.4673-5813.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.4673-5813.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.4673-5813.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.7966-9692.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.7966-9692.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.7966-9692.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.11727-12557.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.11727-12557.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.11727-12557.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C26 Length: 30228 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:3 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:1 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C26.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C26.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1435%7Cshort-chain.for.1-966.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1-966.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1-966.Ar_EST_120301b_c1435%7Cshort-chain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4547%7Cpeptidyl-prolyl.for.533-2079.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.533-2079.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.533-2079.Ar_EST_120301b_rep_c4547%7Cpeptidyl-prolyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13051%7Cdiphosphomevalonate.for.2604-3822.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.2604-3822.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.2604-3822.Ar_EST_120301b_c13051%7Cdiphosphomevalonate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9753%7Cdiphosphomevalonate.for.3048-4517.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.3048-4517.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.3048-4517.Ar_EST_120301b_c9753%7Cdiphosphomevalonate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17359%7Cpredicted.for.4191-5513.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.4191-5513.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.4191-5513.Ar_EST_120301b_c17359%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16806%7Cheat.for.6535-7644.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6535-7644.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6535-7644.Ar_EST_120301b_rep_c16806%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6111%7Cunq118-.for.7137-8101.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.7137-8101.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.7137-8101.Ar_EST_120301b_rep_c6111%7Cunq118-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20263%7Cm105c12r.for.6734-7787.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6734-7787.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6734-7787.Ar_EST_120301b_rep_c20263%7Cm105c12r.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6339%7C---NA---.for.6541-7790.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6541-7790.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6541-7790.Ar_EST_120301b_rep_c6339%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4077%7Cprotein.for.6643-8283.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6643-8283.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6643-8283.Ar_EST_120301b_rep_c4077%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20244%7Clim.for.6558-7789.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6558-7789.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6558-7789.Ar_EST_120301b_rep_c20244%7Clim.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11314%7Cgtp-binding.for.6970-8126.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6970-8126.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6970-8126.Ar_EST_120301b_rep_c11314%7Cgtp-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20404%7Cprotein.for.7103-8081.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.7103-8081.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.7103-8081.Ar_EST_120301b_rep_c20404%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19526%7Ccazo.for.6535-7828.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6535-7828.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6535-7828.Ar_EST_120301b_rep_c19526%7Ccazo.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9415%7C000826otya999025ht.for.7770-9085.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.7770-9085.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.7770-9085.Ar_EST_120301b_c9415%7C000826otya999025ht.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13240%7Cprotein.for.12830-14321.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.12830-14321.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.12830-14321.Ar_EST_120301b_c13240%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4447%7Cpathogenesis-related.for.16744-18213.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.16744-18213.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.16744-18213.Ar_EST_120301b_rep_c4447%7Cpathogenesis-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1392%7Cglycine.for.18463-20388.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.18463-20388.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.18463-20388.120301b_Contig1392%7Cglycine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig112%7Cglycine.for.19277-20741.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.19277-20741.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.19277-20741.120301b_Contig112%7Cglycine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2532%7Cglycine.for.17984-19620.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.17984-19620.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.17984-19620.Ar_EST_120301b_c2532%7Cglycine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2582%7Cglycine.for.20162-21458.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.20162-21458.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.20162-21458.Ar_EST_120301b_c2582%7Cglycine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1819%7Cglycine.for.20617-22092.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.20617-22092.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.20617-22092.Ar_EST_120301b_c1819%7Cglycine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18083%7Cpredicted.for.21304-22699.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.21304-22699.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.21304-22699.Ar_EST_120301b_c18083%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1288%7Csec1.for.22782-24229.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.22782-24229.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.22782-24229.Ar_EST_120301b_c1288%7Csec1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4755%7Cring.for.22158-23653.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.22158-23653.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.22158-23653.Ar_EST_120301b_rep_c4755%7Cring.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13389%7Cproliferation-associated.for.22647-23597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.22647-23597.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.22647-23597.Ar_EST_120301b_rep_c13389%7Cproliferation-associated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18239%7Cprotein.for.24795-26024.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.24795-26024.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.24795-26024.Ar_EST_120301b_c18239%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14682%7Cfy377012.for.25095-26211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.25095-26211.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.25095-26211.Ar_EST_120301b_c14682%7Cfy377012.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12457%7Cdk457596.for.28008-29513.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.28008-29513.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.28008-29513.Ar_EST_120301b_c12457%7Cdk457596.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:43 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:30 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:34 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:46 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:30 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:39 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:24 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:33 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:35 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:29 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081155%7Cgb%7CEFC35313%2E1%7C.for.767-2080.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2080.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2080.gi%7C284081155%7Cgb%7CEFC35313%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092983%7Cgb%7CEFC46623%2E1%7C.for.767-2080.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2080.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2080.gi%7C284092983%7Cgb%7CEFC46623%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096875%7Cgb%7CEFC50502%2E1%7C.for.803-2092.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.803-2092.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.803-2092.gi%7C284096875%7Cgb%7CEFC50502%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090267%7Cgb%7CEFC43920%2E1%7C.for.767-2017.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2017.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2017.gi%7C284090267%7Cgb%7CEFC43920%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092579%7Cgb%7CEFC46220%2E1%7C.for.800-2023.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.800-2023.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.800-2023.gi%7C284092579%7Cgb%7CEFC46220%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093592%7Cgb%7CEFC47229%2E1%7C.for.972-2062.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.972-2062.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.972-2062.gi%7C284093592%7Cgb%7CEFC47229%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089692%7Cgb%7CEFC43348%2E1%7C.for.800-2068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.800-2068.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.800-2068.gi%7C284089692%7Cgb%7CEFC43348%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093109%7Cgb%7CEFC46748%2E1%7C.for.800-2023.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.800-2023.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.800-2023.gi%7C284093109%7Cgb%7CEFC46748%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085514%7Cgb%7CEFC39197%2E1%7C.for.542-2104.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.542-2104.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.542-2104.gi%7C284085514%7Cgb%7CEFC39197%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088464%7Cgb%7CEFC42127%2E1%7C.for.767-2020.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2020.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2020.gi%7C284088464%7Cgb%7CEFC42127%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094883%7Cgb%7CEFC48516%2E1%7C.for.752-2098.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.752-2098.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.752-2098.gi%7C284094883%7Cgb%7CEFC48516%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095464%7Cgb%7CEFC49095%2E1%7C.for.767-2074.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2074.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2074.gi%7C284095464%7Cgb%7CEFC49095%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090503%7Cgb%7CEFC44154%2E1%7C.for.767-2074.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2074.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2074.gi%7C284090503%7Cgb%7CEFC44154%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086458%7Cgb%7CEFC40134%2E1%7C.for.767-1996.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-1996.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-1996.gi%7C284086458%7Cgb%7CEFC40134%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090230%7Cgb%7CEFC43883%2E1%7C.for.1576-3068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1576-3068.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1576-3068.gi%7C284090230%7Cgb%7CEFC43883%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081326%7Cgb%7CEFC35393%2E1%7C.for.1795-2795.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1795-2795.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1795-2795.gi%7C284081326%7Cgb%7CEFC35393%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092568%7Cgb%7CEFC46209%2E1%7C.for.1464-3077.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1464-3077.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1464-3077.gi%7C284092568%7Cgb%7CEFC46209%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089451%7Cgb%7CEFC43108%2E1%7C.for.1573-3146.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1573-3146.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1573-3146.gi%7C284089451%7Cgb%7CEFC43108%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089702%7Cgb%7CEFC43358%2E1%7C.for.1735-2825.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1735-2825.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1735-2825.gi%7C284089702%7Cgb%7CEFC43358%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084444%7Cgb%7CEFC38137%2E1%7C.for.1341-3107.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1341-3107.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1341-3107.gi%7C284084444%7Cgb%7CEFC38137%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082844%7Cgb%7CEFC36555%2E1%7C.for.2605-4508.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.2605-4508.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.2605-4508.gi%7C284082844%7Cgb%7CEFC36555%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091841%7Cgb%7CEFC45486%2E1%7C.for.18327-22000.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.18327-22000.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.18327-22000.gi%7C284091841%7Cgb%7CEFC45486%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081842%7Cgb%7CEFC35690%2E1%7C.for.22129-23267.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.22129-23267.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.22129-23267.gi%7C284081842%7Cgb%7CEFC35690%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:5 now processing 0 ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:5 now processing 0 total clusters:5 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:5 now processing 0 total clusters:5 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:5 now processing 0 ...processing 0 of 11 ...processing 1 of 11 ...processing 2 of 11 ...processing 3 of 11 ...processing 4 of 11 ...processing 5 of 11 ...processing 6 of 11 ...processing 7 of 11 ...processing 8 of 11 ...processing 9 of 11 ...processing 10 of 11 total clusters:5 now processing 0 total clusters:5 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:5 now processing 0 total clusters:5 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:7 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:7 now processing 0 total clusters:7 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:7 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.741-1904.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.741-1904.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.741-1904.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.4379-5313.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.4379-5313.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.4379-5313.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.6734-7628.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.6734-7628.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.6734-7628.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.7969-8885.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.7969-8885.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.7969-8885.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.18183-21892.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.18183-21892.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.18183-21892.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.28207-29347.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.28207-29347.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.28207-29347.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.0-766.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.0-766.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.0-766.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.1540-4317.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.1540-4317.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.1540-4317.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.13029-14137.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.13029-14137.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.13029-14137.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.16943-18013.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.16943-18013.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.16943-18013.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.21503-24123.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.21503-24123.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.21503-24123.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C28 Length: 140015 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C28.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C28.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:4 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16986%7Cvcdc13845.for.460-1786.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.460-1786.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.460-1786.Ar_EST_120301b_c16986%7Cvcdc13845.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11015%7Cmgc84566.for.4593-6206.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.4593-6206.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.4593-6206.Ar_EST_120301b_c11015%7Cmgc84566.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11527%7Chypothetical.for.5457-7204.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.5457-7204.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.5457-7204.Ar_EST_120301b_c11527%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16112%7Cvps28.for.5450-6585.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.5450-6585.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.5450-6585.Ar_EST_120301b_c16112%7Cvps28.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1268%7Creep3.for.7225-8749.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.7225-8749.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.7225-8749.Ar_EST_120301b_c1268%7Creep3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12533%7C---NA---.for.9019-10308.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.9019-10308.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.9019-10308.Ar_EST_120301b_c12533%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1967%7C3.for.7966-10076.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.7966-10076.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.7966-10076.Ar_EST_120301b_c1967%7C3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10582%7Cqct.for.9913-11212.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.9913-11212.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.9913-11212.Ar_EST_120301b_c10582%7Cqct.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c343%7Ckelch.for.10506-11991.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.10506-11991.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.10506-11991.Ar_EST_120301b_c343%7Ckelch.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3655%7Calpha-mannosidase.for.11467-14155.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.11467-14155.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.11467-14155.Ar_EST_120301b_c3655%7Calpha-mannosidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c499%7Cglycosyl.for.13565-15516.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.13565-15516.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.13565-15516.Ar_EST_120301b_c499%7Cglycosyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c650%7Cfq204399.for.15296-16768.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.15296-16768.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.15296-16768.Ar_EST_120301b_c650%7Cfq204399.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12233%7Cautophagy-related.for.16224-17667.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.16224-17667.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.16224-17667.Ar_EST_120301b_c12233%7Cautophagy-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10021%7Ceukaryotic.for.19860-21179.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.19860-21179.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.19860-21179.Ar_EST_120301b_c10021%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13248%7Chypothetical.for.26913-28208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.26913-28208.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.26913-28208.Ar_EST_120301b_c13248%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3283%7Cdenn.for.27515-29594.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.27515-29594.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.27515-29594.Ar_EST_120301b_c3283%7Cdenn.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13847%7Cprotein.for.34193-35519.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.34193-35519.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.34193-35519.Ar_EST_120301b_c13847%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15634%7Cdna.for.35289-36838.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.35289-36838.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.35289-36838.Ar_EST_120301b_c15634%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9717%7CUncharacterized.for.38490-40142.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.38490-40142.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.38490-40142.Ar_EST_120301b_c9717%7CUncharacterized.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15012%7Cleukocyte.for.39997-41185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.39997-41185.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.39997-41185.Ar_EST_120301b_c15012%7Cleukocyte.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10635%7Cserine.for.40921-42054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40921-42054.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40921-42054.Ar_EST_120301b_c10635%7Cserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig650%7Cserine.for.41091-43327.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41091-43327.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41091-43327.120301b_Contig650%7Cserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c731%7Cfn028540.for.42571-43798.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.42571-43798.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.42571-43798.Ar_EST_120301b_c731%7Cfn028540.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9323%7Caplysia.for.42974-44766.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.42974-44766.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.42974-44766.Ar_EST_120301b_c9323%7Caplysia.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12855%7Ccbwb.for.46476-47874.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.46476-47874.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.46476-47874.Ar_EST_120301b_c12855%7Ccbwb.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17067%7Csentrin-specific.for.47159-48553.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.47159-48553.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.47159-48553.Ar_EST_120301b_c17067%7Csentrin-specific.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5223%7Cimsp1_venph.for.56711-58040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.56711-58040.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.56711-58040.Ar_EST_120301b_rep_c5223%7Cimsp1_venph.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17363%7Cpredicted.for.57604-58980.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.57604-58980.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.57604-58980.Ar_EST_120301b_c17363%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15345%7Cats1.for.58530-59811.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.58530-59811.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.58530-59811.Ar_EST_120301b_c15345%7Cats1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15400%7Csa2-vi-b8.for.61106-62363.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.61106-62363.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.61106-62363.Ar_EST_120301b_c15400%7Csa2-vi-b8.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c653%7Ccytochrome.for.69192-71656.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.69192-71656.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.69192-71656.Ar_EST_120301b_c653%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6854%7Cmedium-chain.for.69883-71610.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.69883-71610.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.69883-71610.Ar_EST_120301b_rep_c6854%7Cmedium-chain.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5386%7Crelated.for.69897-71031.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.69897-71031.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.69897-71031.Ar_EST_120301b_rep_c5386%7Crelated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2281%7Ckti12.for.71371-72941.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.71371-72941.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.71371-72941.Ar_EST_120301b_c2281%7Ckti12.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12014%7Cprotein.for.74568-76292.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.74568-76292.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.74568-76292.Ar_EST_120301b_c12014%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2496%7Cloc496076.for.75620-77212.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.75620-77212.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.75620-77212.Ar_EST_120301b_c2496%7Cloc496076.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13121%7Cubiquitin-conjugating.for.76567-77772.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.76567-77772.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.76567-77772.Ar_EST_120301b_c13121%7Cubiquitin-conjugating.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17049%7Cubiquitin-conjugating.for.76656-78111.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.76656-78111.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.76656-78111.Ar_EST_120301b_c17049%7Cubiquitin-conjugating.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15707%7Cubiquitin-conjugating.for.77963-79236.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.77963-79236.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.77963-79236.Ar_EST_120301b_c15707%7Cubiquitin-conjugating.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19531%7Ccytochrome.for.83617-84850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.83617-84850.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.83617-84850.Ar_EST_120301b_rep_c19531%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20458%7Cg5p_21469.for.82987-84183.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82987-84183.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82987-84183.Ar_EST_120301b_rep_c20458%7Cg5p_21469.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig525%7Ccytochrome.for.82529-84894.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82529-84894.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82529-84894.120301b_Contig525%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11444%7Ccytochrome.for.82958-84201.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82958-84201.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82958-84201.Ar_EST_120301b_rep_c11444%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20388%7Ccytochrome.for.82934-84490.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82934-84490.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82934-84490.Ar_EST_120301b_rep_c20388%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12324%7Cprobable.for.83655-84889.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.83655-84889.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.83655-84889.Ar_EST_120301b_rep_c12324%7Cprobable.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20161%7Csoluble.for.82773-83790.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82773-83790.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82773-83790.Ar_EST_120301b_rep_c20161%7Csoluble.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig757%7Cpredicted.for.84687-86383.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.84687-86383.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.84687-86383.120301b_Contig757%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig881%7Cariadne-like.for.85969-88271.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.85969-88271.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.85969-88271.120301b_Contig881%7Cariadne-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2491%7Cprotein.for.88092-90169.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.88092-90169.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.88092-90169.Ar_EST_120301b_c2491%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17100%7Csenescence-associated.for.90025-91440.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.90025-91440.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.90025-91440.Ar_EST_120301b_c17100%7Csenescence-associated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16583%7Ccolon.for.90585-91993.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.90585-91993.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.90585-91993.Ar_EST_120301b_c16583%7Ccolon.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15294%7Cpoly.for.91935-93211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.91935-93211.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.91935-93211.Ar_EST_120301b_c15294%7Cpoly.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig697%7Cankrd32.for.97243-98654.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.97243-98654.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.97243-98654.120301b_Contig697%7Cankrd32.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8635%7Cbrct.for.98441-100125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.98441-100125.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.98441-100125.Ar_EST_120301b_c8635%7Cbrct.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12958%7Cphosphoenolpyruvate.for.99382-100569.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99382-100569.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99382-100569.Ar_EST_120301b_rep_c12958%7Cphosphoenolpyruvate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7209%7Cphosphoenolpyruvate.for.99366-101327.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99366-101327.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99366-101327.Ar_EST_120301b_rep_c7209%7Cphosphoenolpyruvate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13873%7Cphosphoenolpyruvate.for.100295-101322.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.100295-101322.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.100295-101322.Ar_EST_120301b_rep_c13873%7Cphosphoenolpyruvate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4052%7Cphosphoenolpyruvate.for.99339-102017.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99339-102017.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99339-102017.Ar_EST_120301b_rep_c4052%7Cphosphoenolpyruvate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5671%7Cphosphoenolpyruvate.for.99792-101500.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99792-101500.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99792-101500.Ar_EST_120301b_rep_c5671%7Cphosphoenolpyruvate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4277%7Cphosphoenolpyruvate.for.100302-101725.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.100302-101725.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.100302-101725.Ar_EST_120301b_rep_c4277%7Cphosphoenolpyruvate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16128%7Ctranslation.for.101948-103355.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.101948-103355.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.101948-103355.Ar_EST_120301b_c16128%7Ctranslation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15868%7Ckn511.for.102976-104447.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.102976-104447.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.102976-104447.Ar_EST_120301b_c15868%7Ckn511.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7068%7C%28%2B%29-neomenthol.for.105801-107350.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.105801-107350.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.105801-107350.Ar_EST_120301b_rep_c7068%7C%28%2B%29-neomenthol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10200%7Cmetaxin.for.107922-109515.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.107922-109515.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.107922-109515.Ar_EST_120301b_c10200%7Cmetaxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17456%7Cactinin-like.for.114899-116189.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.114899-116189.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.114899-116189.Ar_EST_120301b_c17456%7Cactinin-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig155%7Cww.for.115764-117485.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.115764-117485.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.115764-117485.120301b_Contig155%7Cww.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c522%7Cprotein.for.116877-118241.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.116877-118241.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.116877-118241.Ar_EST_120301b_c522%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14850%7Ccayc.for.118074-119429.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.118074-119429.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.118074-119429.Ar_EST_120301b_c14850%7Ccayc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1195%7Chypothetical.for.119558-121154.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.119558-121154.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.119558-121154.Ar_EST_120301b_c1195%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c724%7Chypothetical.for.118804-120405.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.118804-120405.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.118804-120405.Ar_EST_120301b_c724%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13008%7Chypothetical.for.120208-121407.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.120208-121407.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.120208-121407.Ar_EST_120301b_c13008%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3587%7Cprotein.for.120897-123890.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.120897-123890.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.120897-123890.Ar_EST_120301b_c3587%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8766%7Cdenn.for.123949-125254.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.123949-125254.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.123949-125254.Ar_EST_120301b_rep_c8766%7Cdenn.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17570%7Cprotein.for.123430-124522.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.123430-124522.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.123430-124522.Ar_EST_120301b_rep_c17570%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18858%7Cdenn.for.123660-125168.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.123660-125168.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.123660-125168.Ar_EST_120301b_c18858%7Cdenn.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3052%7Ccullin.for.125843-127484.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.125843-127484.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.125843-127484.Ar_EST_120301b_c3052%7Ccullin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17614%7Ccopper.for.125607-126815.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.125607-126815.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.125607-126815.Ar_EST_120301b_c17614%7Ccopper.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c747%7Cprotein.for.124500-126576.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.124500-126576.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.124500-126576.Ar_EST_120301b_c747%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17078%7Cist_wi5_15381.for.130667-131913.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.130667-131913.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.130667-131913.Ar_EST_120301b_c17078%7Cist_wi5_15381.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17485%7Ccnb66-.for.138702-140015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.138702-140015.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.138702-140015.Ar_EST_120301b_c17485%7Ccnb66-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2216%7Cnormalized.for.138992-140015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.138992-140015.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.138992-140015.Ar_EST_120301b_c2216%7Cnormalized.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2246%7Ccbpn%3A.for.139223-140015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.139223-140015.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.139223-140015.Ar_EST_120301b_c2246%7Ccbpn%3A.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:54 now processing 0 total clusters:54 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:54 now processing 0 total clusters:54 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 total clusters:54 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:52 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:59 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:52 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:72 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:57 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:71 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:35 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:53 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:47 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:41 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083046%7Cgb%7CEFC36754%2E1%7C.for.1-836.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.1-836.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.1-836.gi%7C284083046%7Cgb%7CEFC36754%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091607%7Cgb%7CEFC45253%2E1%7C.for.7653-8617.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.7653-8617.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.7653-8617.gi%7C284091607%7Cgb%7CEFC45253%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092028%7Cgb%7CEFC45672%2E1%7C.for.30151-33419.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.30151-33419.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.30151-33419.gi%7C284092028%7Cgb%7CEFC45672%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090471%7Cgb%7CEFC44123%2E1%7C.for.32804-34254.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.32804-34254.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.32804-34254.gi%7C284090471%7Cgb%7CEFC44123%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096685%7Cgb%7CEFC50312%2E1%7C.for.33998-37035.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.33998-37035.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.33998-37035.gi%7C284096685%7Cgb%7CEFC50312%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088045%7Cgb%7CEFC41711%2E1%7C.for.33818-37032.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.33818-37032.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.33818-37032.gi%7C284088045%7Cgb%7CEFC41711%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090230%7Cgb%7CEFC43883%2E1%7C.for.41294-42622.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41294-42622.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41294-42622.gi%7C284090230%7Cgb%7CEFC43883%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094055%7Cgb%7CEFC47690%2E1%7C.for.40922-43327.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40922-43327.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40922-43327.gi%7C284094055%7Cgb%7CEFC47690%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082128%7Cgb%7CEFC35900%2E1%7C.for.41339-42475.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41339-42475.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41339-42475.gi%7C284082128%7Cgb%7CEFC35900%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096572%7Cgb%7CEFC50200%2E1%7C.for.41336-42448.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41336-42448.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41336-42448.gi%7C284096572%7Cgb%7CEFC50200%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092196%7Cgb%7CEFC45839%2E1%7C.for.40940-42625.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40940-42625.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40940-42625.gi%7C284092196%7Cgb%7CEFC45839%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089069%7Cgb%7CEFC42729%2E1%7C.for.40934-42631.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40934-42631.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40934-42631.gi%7C284089069%7Cgb%7CEFC42729%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088445%7Cgb%7CEFC42108%2E1%7C.for.41318-42628.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41318-42628.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41318-42628.gi%7C284088445%7Cgb%7CEFC42108%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089047%7Cgb%7CEFC42707%2E1%7C.for.40934-42631.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40934-42631.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40934-42631.gi%7C284089047%7Cgb%7CEFC42707%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092545%7Cgb%7CEFC46187%2E1%7C.for.41303-42622.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41303-42622.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41303-42622.gi%7C284092545%7Cgb%7CEFC46187%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092133%7Cgb%7CEFC45776%2E1%7C.for.41336-42763.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41336-42763.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41336-42763.gi%7C284092133%7Cgb%7CEFC45776%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091257%7Cgb%7CEFC44905%2E1%7C.for.41279-42607.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41279-42607.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41279-42607.gi%7C284091257%7Cgb%7CEFC44905%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083391%7Cgb%7CEFC37095%2E1%7C.for.46019-47220.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.46019-47220.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.46019-47220.gi%7C284083391%7Cgb%7CEFC37095%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096907%7Cgb%7CEFC50534%2E1%7C.for.47156-48682.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.47156-48682.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.47156-48682.gi%7C284096907%7Cgb%7CEFC50534%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095965%7Cgb%7CEFC49594%2E1%7C.for.48536-51738.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.48536-51738.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.48536-51738.gi%7C284095965%7Cgb%7CEFC49594%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093119%7Cgb%7CEFC46758%2E1%7C.for.51320-53360.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.51320-53360.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.51320-53360.gi%7C284093119%7Cgb%7CEFC46758%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093777%7Cgb%7CEFC47413%2E1%7C.for.54524-55623.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.54524-55623.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.54524-55623.gi%7C284093777%7Cgb%7CEFC47413%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096265%7Cgb%7CEFC49893%2E1%7C.for.54593-55617.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.54593-55617.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.54593-55617.gi%7C284096265%7Cgb%7CEFC49893%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097069%7Cgb%7CEFC50696%2E1%7C.for.54270-57096.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.54270-57096.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.54270-57096.gi%7C284097069%7Cgb%7CEFC50696%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.67970-69036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67970-69036.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67970-69036.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.for.67964-69033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67964-69033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67964-69033.gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.for.68012-69093.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68012-69093.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68012-69093.gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.for.68009-69099.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68009-69099.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68009-69099.gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085992%7Cgb%7CEFC39672%2E1%7C.for.67967-69084.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67967-69084.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67967-69084.gi%7C284085992%7Cgb%7CEFC39672%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.for.67925-69084.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67925-69084.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67925-69084.gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094669%7Cgb%7CEFC48302%2E1%7C.for.67982-69240.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67982-69240.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67982-69240.gi%7C284094669%7Cgb%7CEFC48302%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095843%7Cgb%7CEFC49472%2E1%7C.for.68009-69078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68009-69078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68009-69078.gi%7C284095843%7Cgb%7CEFC49472%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.for.67991-69033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67991-69033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67991-69033.gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.for.67919-69033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67919-69033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67919-69033.gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090138%7Cgb%7CEFC43791%2E1%7C.for.67922-69105.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67922-69105.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67922-69105.gi%7C284090138%7Cgb%7CEFC43791%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.for.68009-69081.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68009-69081.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68009-69081.gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.for.68006-69042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68006-69042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68006-69042.gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.for.67970-69075.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67970-69075.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67970-69075.gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091293%7Cgb%7CEFC44940%2E1%7C.for.67988-69033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67988-69033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67988-69033.gi%7C284091293%7Cgb%7CEFC44940%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097003%7Cgb%7CEFC50630%2E1%7C.for.67994-69042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67994-69042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67994-69042.gi%7C284097003%7Cgb%7CEFC50630%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.for.68012-69039.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68012-69039.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68012-69039.gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083922%7Cgb%7CEFC37620%2E1%7C.for.67943-69015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67943-69015.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67943-69015.gi%7C284083922%7Cgb%7CEFC37620%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086956%7Cgb%7CEFC40629%2E1%7C.for.67598-69087.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67598-69087.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67598-69087.gi%7C284086956%7Cgb%7CEFC40629%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.for.67874-69132.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67874-69132.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67874-69132.gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090146%7Cgb%7CEFC43799%2E1%7C.for.67946-69078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67946-69078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67946-69078.gi%7C284090146%7Cgb%7CEFC43799%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.for.67928-69057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67928-69057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67928-69057.gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.for.67961-69042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67961-69042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67961-69042.gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.for.67856-69054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67856-69054.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67856-69054.gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082394%7Cgb%7CEFC36117%2E1%7C.for.67865-69255.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67865-69255.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67865-69255.gi%7C284082394%7Cgb%7CEFC36117%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090154%7Cgb%7CEFC43807%2E1%7C.for.67946-69105.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67946-69105.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67946-69105.gi%7C284090154%7Cgb%7CEFC43807%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086531%7Cgb%7CEFC40207%2E1%7C.for.67991-69165.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67991-69165.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67991-69165.gi%7C284086531%7Cgb%7CEFC40207%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081757%7Cgb%7CEFC35637%2E1%7C.for.68006-69000.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68006-69000.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68006-69000.gi%7C284081757%7Cgb%7CEFC35637%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.for.68012-68991.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68012-68991.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68012-68991.gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085724%7Cgb%7CEFC39406%2E1%7C.for.67847-69081.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67847-69081.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67847-69081.gi%7C284085724%7Cgb%7CEFC39406%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090243%7Cgb%7CEFC43896%2E1%7C.for.67895-69036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67895-69036.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67895-69036.gi%7C284090243%7Cgb%7CEFC43896%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090143%7Cgb%7CEFC43796%2E1%7C.for.67946-69078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67946-69078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67946-69078.gi%7C284090143%7Cgb%7CEFC43796%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.for.67889-69003.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67889-69003.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67889-69003.gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.for.67961-69060.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67961-69060.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67961-69060.gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083967%7Cgb%7CEFC37665%2E1%7C.for.67934-69036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67934-69036.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67934-69036.gi%7C284083967%7Cgb%7CEFC37665%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.for.68009-69033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68009-69033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68009-69033.gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087676%7Cgb%7CEFC41344%2E1%7C.for.67853-69180.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67853-69180.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67853-69180.gi%7C284087676%7Cgb%7CEFC41344%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.for.68033-69018.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68033-69018.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68033-69018.gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097074%7Cgb%7CEFC50701%2E1%7C.for.70651-71597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.70651-71597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.70651-71597.gi%7C284097074%7Cgb%7CEFC50701%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089534%7Cgb%7CEFC43191%2E1%7C.for.71334-73035.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.71334-73035.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.71334-73035.gi%7C284089534%7Cgb%7CEFC43191%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081900%7Cgb%7CEFC35731%2E1%7C.for.74620-75881.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.74620-75881.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.74620-75881.gi%7C284081900%7Cgb%7CEFC35731%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090744%7Cgb%7CEFC44394%2E1%7C.for.78118-79271.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.78118-79271.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.78118-79271.gi%7C284090744%7Cgb%7CEFC44394%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081997%7Cgb%7CEFC35800%2E1%7C.for.100561-101797.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.100561-101797.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.100561-101797.gi%7C284081997%7Cgb%7CEFC35800%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093069%7Cgb%7CEFC46708%2E1%7C.for.99379-101743.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99379-101743.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99379-101743.gi%7C284093069%7Cgb%7CEFC46708%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092634%7Cgb%7CEFC46275%2E1%7C.for.101489-103371.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.101489-103371.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.101489-103371.gi%7C284092634%7Cgb%7CEFC46275%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C313471368%7Csp%7CD2VAA9%2E1%7CMTNA_NAEGR.for.101489-103371.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.101489-103371.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.101489-103371.gi%7C313471368%7Csp%7CD2VAA9%2E1%7CMTNA_NAEGR.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084488%7Cgb%7CEFC38180%2E1%7C.for.121181-125102.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.121181-125102.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.121181-125102.gi%7C284084488%7Cgb%7CEFC38180%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093795%7Cgb%7CEFC47431%2E1%7C.for.124481-127583.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.124481-127583.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.124481-127583.gi%7C284093795%7Cgb%7CEFC47431%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093047%7Cgb%7CEFC46686%2E1%7C.for.124481-127362.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.124481-127362.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.124481-127362.gi%7C284093047%7Cgb%7CEFC46686%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:16 now processing 0 total clusters:16 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:16 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:16 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:16 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:13 now processing 0 total clusters:13 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:13 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:13 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:13 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:25 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:32 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:32 now processing 0 total clusters:32 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.659-1586.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.659-1586.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.659-1586.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.7424-8549.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.7424-8549.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.7424-8549.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.27714-29394.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.27714-29394.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.27714-29394.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.33003-36835.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.33003-36835.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.33003-36835.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.38689-39942.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.38689-39942.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.38689-39942.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.40196-40985.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.40196-40985.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.40196-40985.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.41120-43127.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.41120-43127.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.41120-43127.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.46620-48482.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.46620-48482.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.46620-48482.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.48735-53160.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.48735-53160.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.48735-53160.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.54469-57843.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.54469-57843.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.54469-57843.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.82728-84694.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.82728-84694.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.82728-84694.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.88291-89969.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.88291-89969.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.88291-89969.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.90776-91798.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.90776-91798.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.90776-91798.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.103175-104273.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.103175-104273.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.103175-104273.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.106000-107152.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.106000-107152.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.106000-107152.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.115098-118041.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.115098-118041.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.115098-118041.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.118266-125063.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.118266-125063.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.118266-125063.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.5656-7004.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.5656-7004.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.5656-7004.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.8165-15319.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.8165-15319.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.8165-15319.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.15492-17482.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.15492-17482.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.15492-17482.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.20059-20981.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.20059-20981.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.20059-20981.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.27054-28008.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.27054-28008.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.27054-28008.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.30350-33219.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.30350-33219.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.30350-33219.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.42770-44566.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.42770-44566.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.42770-44566.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.57803-68899.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.57803-68899.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.57803-68899.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.69283-71456.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.69283-71456.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.69283-71456.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.71533-72835.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.71533-72835.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.71533-72835.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.74767-79071.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.74767-79071.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.74767-79071.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.84881-88071.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.84881-88071.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.84881-88071.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.92125-93011.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.92125-93011.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.92125-93011.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.97442-103171.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.97442-103171.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.97442-103171.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.124680-127383.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.124680-127383.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.124680-127383.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.130866-131713.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.130866-131713.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.130866-131713.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.138901-139874.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.138901-139874.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.138901-139874.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C29 Length: 126079 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C29.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C29.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:10 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:11 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:14 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:8 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:8 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8179%7Cnormalized.for.1097-2149.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.1097-2149.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.1097-2149.Ar_EST_120301b_rep_c8179%7Cnormalized.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7835%7Cfamily.for.3368-4459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.3368-4459.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.3368-4459.Ar_EST_120301b_c7835%7Cfamily.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c578%7Clow.for.4287-5641.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.4287-5641.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.4287-5641.Ar_EST_120301b_c578%7Clow.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17375%7C021030oocx024022ht.for.5051-6566.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.5051-6566.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.5051-6566.Ar_EST_120301b_c17375%7C021030oocx024022ht.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3629%7Cc2.for.7817-9651.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.7817-9651.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.7817-9651.Ar_EST_120301b_c3629%7Cc2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17542%7Calpha.for.8880-10271.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.8880-10271.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.8880-10271.Ar_EST_120301b_c17542%7Calpha.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4486%7Calpha-galactosidase.for.10166-11409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.10166-11409.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.10166-11409.Ar_EST_120301b_rep_c4486%7Calpha-galactosidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3978%7Calpha-galactosidase.for.10095-11343.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.10095-11343.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.10095-11343.Ar_EST_120301b_c3978%7Calpha-galactosidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig607%7Calpha-galactosidase.for.10102-12189.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.10102-12189.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.10102-12189.120301b_Contig607%7Calpha-galactosidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13874%7CDEHA2F26840p.for.10109-11040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.10109-11040.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.10109-11040.Ar_EST_120301b_rep_c13874%7CDEHA2F26840p.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4318%7Cactin-related.for.15717-17094.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.15717-17094.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.15717-17094.Ar_EST_120301b_rep_c4318%7Cactin-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2448%7Cprotein.for.18162-20068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.18162-20068.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.18162-20068.Ar_EST_120301b_c2448%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1643%7Cgr__ea.for.19898-21165.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.19898-21165.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.19898-21165.Ar_EST_120301b_c1643%7Cgr__ea.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4667%7Cpeptide.for.20507-21836.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.20507-21836.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.20507-21836.Ar_EST_120301b_rep_c4667%7Cpeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13946%7Cfm062691.for.23870-25166.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.23870-25166.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.23870-25166.Ar_EST_120301b_c13946%7Cfm062691.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c822%7Cadenylate.for.25563-26995.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.25563-26995.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.25563-26995.Ar_EST_120301b_c822%7Cadenylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15716%7Chypothetical.for.30116-31920.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.30116-31920.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.30116-31920.Ar_EST_120301b_c15716%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8109%7Cpredicted.for.33231-34533.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.33231-34533.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.33231-34533.Ar_EST_120301b_c8109%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3842%7Cmagnesium.for.34224-36102.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.34224-36102.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.34224-36102.Ar_EST_120301b_c3842%7Cmagnesium.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11375%7Cepsin.for.37842-39172.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.37842-39172.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.37842-39172.Ar_EST_120301b_c11375%7Cepsin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17650%7Ccre-myo-3.for.38846-40560.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.38846-40560.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.38846-40560.Ar_EST_120301b_c17650%7Ccre-myo-3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17315%7Cheat.for.39637-40968.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.39637-40968.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.39637-40968.Ar_EST_120301b_c17315%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18116%7C-like.for.42889-44275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.42889-44275.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.42889-44275.Ar_EST_120301b_c18116%7C-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig816%7Cwd.for.43860-45874.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.43860-45874.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.43860-45874.120301b_Contig816%7Cwd.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9517%7Ccfnw.for.45449-46761.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.45449-46761.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.45449-46761.Ar_EST_120301b_c9517%7Ccfnw.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13557%7Crhomboid.for.48933-50436.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.48933-50436.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.48933-50436.Ar_EST_120301b_c13557%7Crhomboid.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2074%7C39s.for.52467-53984.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.52467-53984.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.52467-53984.Ar_EST_120301b_c2074%7C39s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12950%7Cnad.for.52392-53486.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.52392-53486.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.52392-53486.Ar_EST_120301b_c12950%7Cnad.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2064%7Cdna.for.53309-55811.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.53309-55811.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.53309-55811.Ar_EST_120301b_c2064%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20272%7Cdna.for.55582-57416.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.55582-57416.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.55582-57416.Ar_EST_120301b_c20272%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8469%7Ccatalytic.for.55014-56440.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.55014-56440.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.55014-56440.Ar_EST_120301b_c8469%7Ccatalytic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14008%7Creplication.for.58157-59604.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.58157-59604.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.58157-59604.Ar_EST_120301b_c14008%7Creplication.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17948%7C2-oxoacid.for.68615-69892.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.68615-69892.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.68615-69892.Ar_EST_120301b_c17948%7C2-oxoacid.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17240%7Cfy373865.for.71171-72567.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.71171-72567.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.71171-72567.Ar_EST_120301b_c17240%7Cfy373865.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig278%7Cprotein.for.70529-73090.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.70529-73090.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.70529-73090.120301b_Contig278%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12757%7Cnormalized.for.73057-74393.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.73057-74393.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.73057-74393.Ar_EST_120301b_c12757%7Cnormalized.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19042%7Cmannan-binding.for.82056-83763.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.82056-83763.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.82056-83763.Ar_EST_120301b_c19042%7Cmannan-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7939%7Cmannan-binding.for.82082-83494.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.82082-83494.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.82082-83494.Ar_EST_120301b_c7939%7Cmannan-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19195%7Cpredicted.for.84202-85409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.84202-85409.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.84202-85409.Ar_EST_120301b_c19195%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9407%7Cpredicted.for.84534-85789.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.84534-85789.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.84534-85789.Ar_EST_120301b_c9407%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c975%7Cphospholipase.for.85526-86849.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.85526-86849.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.85526-86849.Ar_EST_120301b_c975%7Cphospholipase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18766%7Cprotein.for.86248-87871.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.86248-87871.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.86248-87871.Ar_EST_120301b_c18766%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8008%7Cest_omyk_evo_818589.for.86726-88045.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.86726-88045.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.86726-88045.Ar_EST_120301b_c8008%7Cest_omyk_evo_818589.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16106%7Cmm1-0024t-m079-a10-.for.87327-88533.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.87327-88533.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.87327-88533.Ar_EST_120301b_c16106%7Cmm1-0024t-m079-a10-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig780%7Cfy580029.for.88294-89812.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.88294-89812.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.88294-89812.120301b_Contig780%7Cfy580029.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3543%7Cdcn1-like.for.89436-91029.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.89436-91029.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.89436-91029.Ar_EST_120301b_c3543%7Cdcn1-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2727%7Cskp1-like.for.90317-92010.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.90317-92010.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.90317-92010.Ar_EST_120301b_c2727%7Cskp1-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13307%7Chypothetical.for.91504-92833.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.91504-92833.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.91504-92833.Ar_EST_120301b_c13307%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8761%7Cplant.for.92721-94535.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.92721-94535.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.92721-94535.Ar_EST_120301b_c8761%7Cplant.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18653%7Cvacuolar.for.94821-96247.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.94821-96247.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.94821-96247.Ar_EST_120301b_c18653%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7779%7Cribosomal.for.95438-97086.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.95438-97086.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.95438-97086.Ar_EST_120301b_c7779%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19859%7Cvam6.for.96081-98261.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.96081-98261.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.96081-98261.Ar_EST_120301b_c19859%7Cvam6.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19889%7Cam524334.for.94360-95913.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.94360-95913.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.94360-95913.Ar_EST_120301b_c19889%7Cam524334.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2947%7Coxoglutarate.for.102452-104208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.102452-104208.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.102452-104208.Ar_EST_120301b_c2947%7Coxoglutarate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3312%7Coxoglutarate.for.100584-102407.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.100584-102407.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.100584-102407.Ar_EST_120301b_c3312%7Coxoglutarate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8241%7Coxoglutarate.for.101538-103504.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.101538-103504.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.101538-103504.Ar_EST_120301b_c8241%7Coxoglutarate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c827%7Cxanthine.for.103424-104780.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.103424-104780.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.103424-104780.Ar_EST_120301b_c827%7Cxanthine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3666%7Cxanthine.for.103935-106710.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.103935-106710.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.103935-106710.Ar_EST_120301b_c3666%7Cxanthine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c76%7Cxanthine.for.106048-107728.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.106048-107728.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.106048-107728.Ar_EST_120301b_c76%7Cxanthine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13578%7Cxanthine.for.107198-108391.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.107198-108391.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.107198-108391.Ar_EST_120301b_c13578%7Cxanthine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15340%7C---NA---.for.108866-110095.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.108866-110095.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.108866-110095.Ar_EST_120301b_c15340%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14806%7Cubiquitin.for.112126-113439.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.112126-113439.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.112126-113439.Ar_EST_120301b_c14806%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10754%7Cfs549801.for.114432-115482.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.114432-115482.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.114432-115482.Ar_EST_120301b_c10754%7Cfs549801.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2885%7Catp-dependent.for.114881-116819.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.114881-116819.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.114881-116819.Ar_EST_120301b_c2885%7Catp-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16854%7Ccns.for.115963-117321.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.115963-117321.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.115963-117321.Ar_EST_120301b_c16854%7Ccns.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1234%7Cextracellular.for.116926-119073.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.116926-119073.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.116926-119073.Ar_EST_120301b_c1234%7Cextracellular.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18156%7Cest_bsai_evw_1261795.for.118556-119843.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.118556-119843.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.118556-119843.Ar_EST_120301b_c18156%7Cest_bsai_evw_1261795.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16679%7C---NA---.for.119682-120970.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.119682-120970.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.119682-120970.Ar_EST_120301b_c16679%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15340%7C---NA---.for.121298-122521.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.121298-122521.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.121298-122521.Ar_EST_120301b_c15340%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7264%7Celongation.for.122454-123795.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122454-123795.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122454-123795.Ar_EST_120301b_rep_c7264%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7231%7Ctranslation.for.122649-123799.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122649-123799.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122649-123799.Ar_EST_120301b_rep_c7231%7Ctranslation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19680%7Celongation.for.122972-124120.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122972-124120.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122972-124120.Ar_EST_120301b_rep_c19680%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5056%7Celongation.for.123236-124322.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123236-124322.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123236-124322.Ar_EST_120301b_rep_c5056%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20204%7Celongation.for.123352-124343.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123352-124343.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123352-124343.Ar_EST_120301b_rep_c20204%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4033%7Celongation.for.122354-124484.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122354-124484.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122354-124484.Ar_EST_120301b_rep_c4033%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig612%7Celongation.for.123121-124432.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123121-124432.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123121-124432.120301b_Contig612%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7205%7Ctranslation.for.122978-124036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122978-124036.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122978-124036.Ar_EST_120301b_rep_c7205%7Ctranslation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15762%7Celongation.for.123409-124481.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123409-124481.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123409-124481.Ar_EST_120301b_rep_c15762%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig613%7Celongation.for.122770-124010.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122770-124010.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122770-124010.120301b_Contig613%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18610%7Celongation.for.123405-124479.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123405-124479.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123405-124479.Ar_EST_120301b_rep_c18610%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5963%7Celongation.for.122376-123486.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122376-123486.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122376-123486.Ar_EST_120301b_rep_c5963%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20041%7Celongation.for.122393-123437.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122393-123437.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122393-123437.Ar_EST_120301b_rep_c20041%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5394%7Celongation.for.122479-123583.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122479-123583.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122479-123583.Ar_EST_120301b_rep_c5394%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8943%7Celongation.for.123127-124102.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123127-124102.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123127-124102.Ar_EST_120301b_c8943%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7169%7Celongation.for.123192-124250.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123192-124250.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123192-124250.Ar_EST_120301b_rep_c7169%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5382%7Celongation.for.123276-124266.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123276-124266.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123276-124266.Ar_EST_120301b_rep_c5382%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4827%7Celongation.for.122343-123988.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122343-123988.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122343-123988.Ar_EST_120301b_rep_c4827%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16096%7Celongation.for.122363-123545.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122363-123545.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122363-123545.Ar_EST_120301b_rep_c16096%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7219%7Ctranslation.for.122603-123858.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122603-123858.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122603-123858.Ar_EST_120301b_rep_c7219%7Ctranslation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7236%7Celongation.for.122883-124068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122883-124068.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122883-124068.Ar_EST_120301b_rep_c7236%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19915%7Celongation.for.123442-124484.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123442-124484.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123442-124484.Ar_EST_120301b_rep_c19915%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5477%7Celongation.for.122462-123491.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122462-123491.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122462-123491.Ar_EST_120301b_rep_c5477%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19970%7Celongation.for.123399-124493.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123399-124493.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123399-124493.Ar_EST_120301b_rep_c19970%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7042%7Ctranslation.for.122885-124003.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122885-124003.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122885-124003.Ar_EST_120301b_rep_c7042%7Ctranslation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6990%7Celongation.for.122895-124193.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122895-124193.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122895-124193.Ar_EST_120301b_rep_c6990%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7719%7Celongation.for.123277-124464.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123277-124464.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123277-124464.Ar_EST_120301b_rep_c7719%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5354%7Celongation.for.123442-124478.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123442-124478.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123442-124478.Ar_EST_120301b_rep_c5354%7Celongation.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:51 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:51 now processing 0 total clusters:51 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:51 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 total clusters:51 now processing 0 ...processing 0 of 10 ...processing 1 of 10 ...processing 2 of 10 ...processing 3 of 10 ...processing 4 of 10 ...processing 5 of 10 ...processing 6 of 10 ...processing 7 of 10 ...processing 8 of 10 ...processing 9 of 10 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:37 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:30 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:35 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:43 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:33 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:29 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:31 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:35 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:24 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094796%7Cgb%7CEFC48429%2E1%7C.for.15642-17017.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.15642-17017.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.15642-17017.gi%7C284094796%7Cgb%7CEFC48429%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082488%7Cgb%7CEFC36205%2E1%7C.for.16488-18115.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.16488-18115.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.16488-18115.gi%7C284082488%7Cgb%7CEFC36205%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087289%7Cgb%7CEFC40960%2E1%7C.for.17992-20585.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.17992-20585.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.17992-20585.gi%7C284087289%7Cgb%7CEFC40960%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095823%7Cgb%7CEFC49452%2E1%7C.for.20546-21798.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.20546-21798.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.20546-21798.gi%7C284095823%7Cgb%7CEFC49452%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083472%7Cgb%7CEFC37175%2E1%7C.for.23710-24791.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.23710-24791.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.23710-24791.gi%7C284083472%7Cgb%7CEFC37175%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093407%7Cgb%7CEFC47045%2E1%7C.for.33790-35729.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.33790-35729.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.33790-35729.gi%7C284093407%7Cgb%7CEFC47045%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088682%7Cgb%7CEFC42344%2E1%7C.for.43774-45818.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.43774-45818.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.43774-45818.gi%7C284088682%7Cgb%7CEFC42344%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090843%7Cgb%7CEFC44493%2E1%7C.for.51653-52746.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.51653-52746.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.51653-52746.gi%7C284090843%7Cgb%7CEFC44493%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085714%7Cgb%7CEFC39396%2E1%7C.for.52255-54015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.52255-54015.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.52255-54015.gi%7C284085714%7Cgb%7CEFC39396%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089155%7Cgb%7CEFC42814%2E1%7C.for.53275-57104.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.53275-57104.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.53275-57104.gi%7C284089155%7Cgb%7CEFC42814%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086989%7Cgb%7CEFC40662%2E1%7C.for.58507-59883.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.58507-59883.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.58507-59883.gi%7C284086989%7Cgb%7CEFC40662%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096971%7Cgb%7CEFC50598%2E1%7C.for.57951-59898.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.57951-59898.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.57951-59898.gi%7C284096971%7Cgb%7CEFC50598%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092099%7Cgb%7CEFC45742%2E1%7C.for.60927-63829.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.60927-63829.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.60927-63829.gi%7C284092099%7Cgb%7CEFC45742%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088599%7Cgb%7CEFC42262%2E1%7C.for.67523-68880.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.67523-68880.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.67523-68880.gi%7C284088599%7Cgb%7CEFC42262%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087974%7Cgb%7CEFC41640%2E1%7C.for.89522-91023.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.89522-91023.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.89522-91023.gi%7C284087974%7Cgb%7CEFC41640%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094695%7Cgb%7CEFC48328%2E1%7C.for.101040-104240.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.101040-104240.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.101040-104240.gi%7C284094695%7Cgb%7CEFC48328%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087414%7Cgb%7CEFC41084%2E1%7C.for.100661-104243.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.100661-104243.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.100661-104243.gi%7C284087414%7Cgb%7CEFC41084%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080893%7Cgb%7CEFC35223%2E1%7C.for.103783-105176.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.103783-105176.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.103783-105176.gi%7C284080893%7Cgb%7CEFC35223%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095600%7Cgb%7CEFC49230%2E1%7C.for.103573-108452.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.103573-108452.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.103573-108452.gi%7C284095600%7Cgb%7CEFC49230%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089171%7Cgb%7CEFC42830%2E1%7C.for.107194-108455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.107194-108455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.107194-108455.gi%7C284089171%7Cgb%7CEFC42830%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081083%7Cgb%7CEFC35289%2E1%7C.for.104227-105854.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.104227-105854.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.104227-105854.gi%7C284081083%7Cgb%7CEFC35289%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082443%7Cgb%7CEFC36161%2E1%7C.for.117710-118968.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.117710-118968.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.117710-118968.gi%7C284082443%7Cgb%7CEFC36161%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090531%7Cgb%7CEFC44182%2E1%7C.for.122379-124477.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122379-124477.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122379-124477.gi%7C284090531%7Cgb%7CEFC44182%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096603%7Cgb%7CEFC50231%2E1%7C.for.122379-124477.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122379-124477.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122379-124477.gi%7C284096603%7Cgb%7CEFC50231%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084223%7Cgb%7CEFC37918%2E1%7C.for.122379-124477.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122379-124477.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122379-124477.gi%7C284084223%7Cgb%7CEFC37918%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C84105357%7Cgb%7CABC54650%2E1%7C.for.122424-124411.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122424-124411.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122424-124411.gi%7C84105357%7Cgb%7CABC54650%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:15 now processing 0 total clusters:15 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 total clusters:13 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:28 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:28 now processing 0 total clusters:28 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:28 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 2 ...processing 1 of 2 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 10 ...processing 1 of 10 ...processing 2 of 10 ...processing 3 of 10 ...processing 4 of 10 ...processing 5 of 10 ...processing 6 of 10 ...processing 7 of 10 ...processing 8 of 10 ...processing 9 of 10 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.1215-2144.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.1215-2144.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.1215-2144.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.4486-6372.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.4486-6372.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.4486-6372.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.7893-9451.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.7893-9451.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.7893-9451.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.10244-11989.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.10244-11989.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.10244-11989.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.20696-21639.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.20696-21639.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.20696-21639.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.24069-24966.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.24069-24966.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.24069-24966.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.33430-34333.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.33430-34333.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.33430-34333.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.38041-40366.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.38041-40366.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.38041-40366.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.43973-46561.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.43973-46561.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.43973-46561.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.52454-53815.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.52454-53815.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.52454-53815.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.70728-74193.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.70728-74193.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.70728-74193.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.82281-83294.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.82281-83294.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.82281-83294.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.84401-85589.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.84401-85589.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.84401-85589.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.85725-88333.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.85725-88333.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.85725-88333.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.88493-89612.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.88493-89612.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.88493-89612.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.89634-90829.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.89634-90829.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.89634-90829.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.94500-98061.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.94500-98061.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.94500-98061.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.100857-104580.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.100857-104580.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.100857-104580.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.109065-109895.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.109065-109895.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.109065-109895.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.112325-113239.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.112325-113239.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.112325-113239.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.121491-122321.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.121491-122321.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.121491-122321.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.9079-10071.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.9079-10071.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.9079-10071.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.15841-17915.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.15841-17915.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.15841-17915.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.18361-19868.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.18361-19868.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.18361-19868.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.20097-20965.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.20097-20965.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.20097-20965.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.25760-26795.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.25760-26795.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.25760-26795.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.33989-35902.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.33989-35902.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.33989-35902.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.43088-44075.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.43088-44075.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.43088-44075.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.49132-50236.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.49132-50236.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.49132-50236.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.51852-52546.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.51852-52546.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.51852-52546.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.53474-57216.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.53474-57216.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.53474-57216.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.58150-59698.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.58150-59698.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.58150-59698.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.61126-63629.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.61126-63629.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.61126-63629.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.90516-92633.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.90516-92633.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.90516-92633.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.92920-94335.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.92920-94335.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.92920-94335.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.103772-108252.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.103772-108252.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.103772-108252.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.116162-117121.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.116162-117121.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.116162-117121.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.117125-119712.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.117125-119712.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.117125-119712.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.119872-120770.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.119872-120770.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.119872-120770.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.122543-124287.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.122543-124287.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.122543-124287.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C30 Length: 54314 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:2 current j:0 j_size:2 current j:1 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C30.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C30.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig893%7Catp-binding.for.466-2557.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.466-2557.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.466-2557.120301b_Contig893%7Catp-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10773%7Cabc.for.1870-3393.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1870-3393.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1870-3393.Ar_EST_120301b_c10773%7Cabc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4126%7Chypothetical.for.2863-4751.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.2863-4751.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.2863-4751.Ar_EST_120301b_rep_c4126%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6273%7Cprotein.for.3309-4727.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.3309-4727.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.3309-4727.Ar_EST_120301b_rep_c6273%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15582%7C---NA---.for.3691-4637.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.3691-4637.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.3691-4637.Ar_EST_120301b_rep_c15582%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12926%7Ccchx.for.7094-8380.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.7094-8380.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.7094-8380.Ar_EST_120301b_c12926%7Ccchx.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17763%7Cdna.for.8313-9673.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.8313-9673.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.8313-9673.Ar_EST_120301b_c17763%7Cdna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4571%7Cspry.for.12651-15061.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.12651-15061.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.12651-15061.Ar_EST_120301b_rep_c4571%7Cspry.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4942%7Cspry.for.12752-14477.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.12752-14477.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.12752-14477.Ar_EST_120301b_rep_c4942%7Cspry.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19099%7Cnabrp89tf.for.15014-16243.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.15014-16243.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.15014-16243.Ar_EST_120301b_rep_c19099%7Cnabrp89tf.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6660%7Cbasal.for.30092-32127.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.30092-32127.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.30092-32127.Ar_EST_120301b_rep_c6660%7Cbasal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18311%7Cnuclear.for.32038-33497.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.32038-33497.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.32038-33497.Ar_EST_120301b_c18311%7Cnuclear.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16390%7Catp-dependent.for.32819-34056.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.32819-34056.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.32819-34056.Ar_EST_120301b_c16390%7Catp-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11194%7Cpredicted.for.38415-39629.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.38415-39629.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.38415-39629.Ar_EST_120301b_c11194%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig234%7Chypothetical.for.39994-41974.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.39994-41974.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.39994-41974.120301b_Contig234%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10235%7Cprotein.for.39033-40812.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.39033-40812.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.39033-40812.Ar_EST_120301b_c10235%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2809%7Cprotein.for.42500-43683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.42500-43683.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.42500-43683.Ar_EST_120301b_c2809%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8390%7Clarv027tr.for.41927-43429.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.41927-43429.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.41927-43429.Ar_EST_120301b_c8390%7Clarv027tr.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3793%7Ctpr.for.43881-45649.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.43881-45649.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.43881-45649.Ar_EST_120301b_c3793%7Ctpr.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10560%7C015b07_011507c.for.45034-46189.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.45034-46189.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.45034-46189.Ar_EST_120301b_c10560%7C015b07_011507c.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6594%7Ceukaryotic.for.46490-48119.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.46490-48119.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.46490-48119.Ar_EST_120301b_rep_c6594%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12692%7Cdna-binding.for.47435-48595.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.47435-48595.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.47435-48595.Ar_EST_120301b_c12692%7Cdna-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3672%7Ccold.for.47988-49845.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.47988-49845.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.47988-49845.Ar_EST_120301b_c3672%7Ccold.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:17 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:19 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:17 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:16 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:14 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:19 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:13 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:14 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:14 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:17 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082638%7Cgb%7CEFC36352%2E1%7C.for.1529-3354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3354.gi%7C284082638%7Cgb%7CEFC36352%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089041%7Cgb%7CEFC42701%2E1%7C.for.742-3363.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.742-3363.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.742-3363.gi%7C284089041%7Cgb%7CEFC42701%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096503%7Cgb%7CEFC50131%2E1%7C.for.1526-3375.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1526-3375.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1526-3375.gi%7C284096503%7Cgb%7CEFC50131%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086918%7Cgb%7CEFC40591%2E1%7C.for.1529-3375.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3375.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3375.gi%7C284086918%7Cgb%7CEFC40591%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091223%7Cgb%7CEFC44871%2E1%7C.for.1529-3369.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3369.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3369.gi%7C284091223%7Cgb%7CEFC44871%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096824%7Cgb%7CEFC50451%2E1%7C.for.1784-3351.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1784-3351.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1784-3351.gi%7C284096824%7Cgb%7CEFC50451%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086695%7Cgb%7CEFC40370%2E1%7C.for.2225-3375.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.2225-3375.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.2225-3375.gi%7C284086695%7Cgb%7CEFC40370%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093963%7Cgb%7CEFC47599%2E1%7C.for.1535-3354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1535-3354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1535-3354.gi%7C284093963%7Cgb%7CEFC47599%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089381%7Cgb%7CEFC43039%2E1%7C.for.1529-3369.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3369.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3369.gi%7C284089381%7Cgb%7CEFC43039%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086532%7Cgb%7CEFC40208%2E1%7C.for.1598-3348.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1598-3348.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1598-3348.gi%7C284086532%7Cgb%7CEFC40208%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092043%7Cgb%7CEFC45687%2E1%7C.for.1529-3354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3354.gi%7C284092043%7Cgb%7CEFC45687%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085363%7Cgb%7CEFC39047%2E1%7C.for.1529-3354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3354.gi%7C284085363%7Cgb%7CEFC39047%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083990%7Cgb%7CEFC37687%2E1%7C.for.1520-3351.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1520-3351.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1520-3351.gi%7C284083990%7Cgb%7CEFC37687%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083848%7Cgb%7CEFC37547%2E1%7C.for.1535-3351.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1535-3351.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1535-3351.gi%7C284083848%7Cgb%7CEFC37547%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086873%7Cgb%7CEFC40547%2E1%7C.for.1625-3363.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1625-3363.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1625-3363.gi%7C284086873%7Cgb%7CEFC40547%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083434%7Cgb%7CEFC37137%2E1%7C.for.1535-3354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1535-3354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1535-3354.gi%7C284083434%7Cgb%7CEFC37137%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094052%7Cgb%7CEFC47687%2E1%7C.for.1547-3354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1547-3354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1547-3354.gi%7C284094052%7Cgb%7CEFC47687%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085442%7Cgb%7CEFC39126%2E1%7C.for.1529-3354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3354.gi%7C284085442%7Cgb%7CEFC39126%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092675%7Cgb%7CEFC46316%2E1%7C.for.1535-3369.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1535-3369.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1535-3369.gi%7C284092675%7Cgb%7CEFC46316%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083453%7Cgb%7CEFC37156%2E1%7C.for.1523-3363.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1523-3363.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1523-3363.gi%7C284083453%7Cgb%7CEFC37156%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085964%7Cgb%7CEFC39644%2E1%7C.for.1823-3354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1823-3354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1823-3354.gi%7C284085964%7Cgb%7CEFC39644%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096783%7Cgb%7CEFC50410%2E1%7C.for.11072-13224.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.11072-13224.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.11072-13224.gi%7C284096783%7Cgb%7CEFC50410%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084703%7Cgb%7CEFC38393%2E1%7C.for.24850-25808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.24850-25808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.24850-25808.gi%7C284084703%7Cgb%7CEFC38393%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088237%7Cgb%7CEFC41902%2E1%7C.for.37067-38139.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.37067-38139.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.37067-38139.gi%7C284088237%7Cgb%7CEFC41902%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088261%7Cgb%7CEFC41926%2E1%7C.for.36988-38142.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.36988-38142.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.36988-38142.gi%7C284088261%7Cgb%7CEFC41926%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085648%7Cgb%7CEFC39330%2E1%7C.for.39406-40370.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.39406-40370.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.39406-40370.gi%7C284085648%7Cgb%7CEFC39330%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:2 now processing 0 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:2 now processing 0 in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:2 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:2 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:11 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.941-4551.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.941-4551.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.941-4551.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.7293-8180.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.7293-8180.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.7293-8180.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.8512-9473.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.8512-9473.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.8512-9473.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.11271-13024.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.11271-13024.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.11271-13024.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.30291-31960.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.30291-31960.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.30291-31960.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.32237-33865.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.32237-33865.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.32237-33865.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.39232-41792.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.39232-41792.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.39232-41792.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.42126-43343.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.42126-43343.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.42126-43343.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.3881-4437.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.3881-4437.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.3881-4437.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.12850-14861.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.12850-14861.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.12850-14861.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.15213-16051.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.15213-16051.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.15213-16051.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.44080-45989.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.44080-45989.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.44080-45989.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.46689-48014.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.46689-48014.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.46689-48014.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.48187-49645.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.48187-49645.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.48187-49645.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C33 Length: 138103 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C33.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C33.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:4 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10865%7Cn-terminal.for.2033-3700.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.2033-3700.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.2033-3700.Ar_EST_120301b_c10865%7Cn-terminal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8426%7Cinositol.for.9692-11354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.9692-11354.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.9692-11354.Ar_EST_120301b_c8426%7Cinositol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3091%7Cadipose-regulatory.for.13714-15674.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.13714-15674.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.13714-15674.Ar_EST_120301b_c3091%7Cadipose-regulatory.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14794%7Cfs962201.for.15139-16417.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.15139-16417.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.15139-16417.Ar_EST_120301b_c14794%7Cfs962201.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13215%7Cankyrin.for.15913-17182.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.15913-17182.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.15913-17182.Ar_EST_120301b_c13215%7Cankyrin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13475%7Ctransformer-sr.for.16806-18266.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.16806-18266.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.16806-18266.Ar_EST_120301b_rep_c13475%7Ctransformer-sr.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19625%7Cgtp-binding.for.18288-19294.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.18288-19294.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.18288-19294.Ar_EST_120301b_rep_c19625%7Cgtp-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c57%7Cdevelopmentally.for.17581-19507.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.17581-19507.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.17581-19507.Ar_EST_120301b_c57%7Cdevelopmentally.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9143%7Ccatf.for.20396-21844.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.20396-21844.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.20396-21844.Ar_EST_120301b_rep_c9143%7Ccatf.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18330%7Ccafy.for.21621-22865.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.21621-22865.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.21621-22865.Ar_EST_120301b_c18330%7Ccafy.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig221%7Cfp601087.for.22358-24862.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.22358-24862.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.22358-24862.120301b_Contig221%7Cfp601087.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c250%7Cv-myb.for.26371-29070.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.26371-29070.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.26371-29070.Ar_EST_120301b_c250%7Cv-myb.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2206%7C280438371.for.27937-29275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.27937-29275.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.27937-29275.Ar_EST_120301b_c2206%7C280438371.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17101%7Cche.for.28883-30363.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.28883-30363.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.28883-30363.Ar_EST_120301b_c17101%7Cche.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12076%7C---NA---.for.28960-30054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.28960-30054.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.28960-30054.Ar_EST_120301b_c12076%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5943%7Csyntaxin-binding.for.30851-32397.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.30851-32397.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.30851-32397.Ar_EST_120301b_rep_c5943%7Csyntaxin-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4805%7Csyntaxin.for.29991-32900.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.29991-32900.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.29991-32900.Ar_EST_120301b_rep_c4805%7Csyntaxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9158%7Csec1-like.for.31452-32914.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.31452-32914.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.31452-32914.Ar_EST_120301b_c9158%7Csec1-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16864%7Csyntaxin.for.31408-32511.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.31408-32511.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.31408-32511.Ar_EST_120301b_rep_c16864%7Csyntaxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16176%7Csyntaxin.for.30212-31558.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.30212-31558.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.30212-31558.Ar_EST_120301b_rep_c16176%7Csyntaxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9532%7Cconserved.for.32392-33871.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.32392-33871.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.32392-33871.Ar_EST_120301b_c9532%7Cconserved.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig434%7Ccell.for.35440-36926.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.35440-36926.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.35440-36926.120301b_Contig434%7Ccell.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17121%7Cgpi.for.37557-39027.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.37557-39027.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.37557-39027.Ar_EST_120301b_c17121%7Cgpi.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1164%7Cbst1_canga.for.38294-40130.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.38294-40130.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.38294-40130.120301b_Contig1164%7Cbst1_canga.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12556%7Col2821f.for.40012-41356.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.40012-41356.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.40012-41356.Ar_EST_120301b_c12556%7Col2821f.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13810%7Cexosome.for.40762-41850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.40762-41850.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.40762-41850.Ar_EST_120301b_c13810%7Cexosome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20565%7Cexosome.for.40975-42051.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.40975-42051.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.40975-42051.Ar_EST_120301b_rep_c20565%7Cexosome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1304%7Cexosome.for.42981-44309.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.42981-44309.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.42981-44309.Ar_EST_120301b_c1304%7Cexosome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20442%7Cexosome.for.43169-44389.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.43169-44389.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.43169-44389.Ar_EST_120301b_c20442%7Cexosome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9428%7Cunconventional.for.45256-46575.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.45256-46575.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.45256-46575.Ar_EST_120301b_c9428%7Cunconventional.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10763%7Cprotein.for.46158-47562.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.46158-47562.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.46158-47562.Ar_EST_120301b_c10763%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8600%7Cprotein.for.47002-48304.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.47002-48304.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.47002-48304.Ar_EST_120301b_c8600%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11770%7Cribonucleoside.for.49566-51011.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.49566-51011.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.49566-51011.Ar_EST_120301b_c11770%7Cribonucleoside.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19499%7Cribonucleoside.for.48600-50066.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.48600-50066.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.48600-50066.Ar_EST_120301b_c19499%7Cribonucleoside.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8020%7Cribonucleoside-triphosphate.for.48907-50444.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.48907-50444.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.48907-50444.Ar_EST_120301b_c8020%7Cribonucleoside-triphosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20281%7Ccation-transporting.for.52923-55212.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.52923-55212.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.52923-55212.Ar_EST_120301b_c20281%7Ccation-transporting.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17555%7Ccation-transporting.for.52392-53740.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.52392-53740.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.52392-53740.Ar_EST_120301b_c17555%7Ccation-transporting.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10588%7Cprobable.for.54509-55821.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.54509-55821.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.54509-55821.Ar_EST_120301b_c10588%7Cprobable.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3266%7Cglycosyltransferase.for.59493-61361.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.59493-61361.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.59493-61361.Ar_EST_120301b_c3266%7Cglycosyltransferase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14384%7Cprotein.for.61027-62292.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.61027-62292.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.61027-62292.Ar_EST_120301b_c14384%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14706%7Capoptosis.for.61337-62285.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.61337-62285.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.61337-62285.Ar_EST_120301b_c14706%7Capoptosis.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4234%7Chypothetical.for.63085-65145.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.63085-65145.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.63085-65145.Ar_EST_120301b_rep_c4234%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6835%7Cleishmanolysin-like.for.63703-64777.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.63703-64777.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.63703-64777.Ar_EST_120301b_rep_c6835%7Cleishmanolysin-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17669%7Chypothetical.for.63308-64533.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.63308-64533.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.63308-64533.Ar_EST_120301b_rep_c17669%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6093%7C---NA---.for.64020-65144.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.64020-65144.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.64020-65144.Ar_EST_120301b_rep_c6093%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11320%7Cpentatricopeptide.for.65970-67270.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.65970-67270.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.65970-67270.Ar_EST_120301b_c11320%7Cpentatricopeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c681%7Chypothetical.for.72906-74211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.72906-74211.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.72906-74211.Ar_EST_120301b_c681%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12804%7Ctype.for.75141-76563.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.75141-76563.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.75141-76563.Ar_EST_120301b_c12804%7Ctype.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6513%7Cmalate.for.80519-82412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.80519-82412.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.80519-82412.Ar_EST_120301b_rep_c6513%7Cmalate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6815%7Cmalate.for.80492-82211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.80492-82211.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.80492-82211.Ar_EST_120301b_rep_c6815%7Cmalate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3066%7Cmalate.for.79932-81736.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.79932-81736.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.79932-81736.Ar_EST_120301b_c3066%7Cmalate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16333%7Ctransport.for.82370-83712.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.82370-83712.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.82370-83712.Ar_EST_120301b_c16333%7Ctransport.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10746%7Cbeige.for.85163-86860.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.85163-86860.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.85163-86860.Ar_EST_120301b_c10746%7Cbeige.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14032%7Ccaxx.for.86480-87826.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.86480-87826.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.86480-87826.Ar_EST_120301b_c14032%7Ccaxx.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12871%7Cpredicted.for.88548-89839.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.88548-89839.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.88548-89839.Ar_EST_120301b_c12871%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15711%7Cbeach.for.89286-90628.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.89286-90628.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.89286-90628.Ar_EST_120301b_c15711%7Cbeach.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13277%7Cpredicted.for.90419-92191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.90419-92191.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.90419-92191.Ar_EST_120301b_c13277%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15589%7Cprotein.for.102548-103609.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.102548-103609.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.102548-103609.Ar_EST_120301b_c15589%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16197%7Cprotein.for.102885-104227.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.102885-104227.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.102885-104227.Ar_EST_120301b_c16197%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c22%7Caminotransferase.for.108878-111199.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.108878-111199.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.108878-111199.Ar_EST_120301b_c22%7Caminotransferase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15277%7Cprotein.for.110958-112022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.110958-112022.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.110958-112022.Ar_EST_120301b_c15277%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5938%7Carginine.for.112004-113875.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.112004-113875.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.112004-113875.Ar_EST_120301b_rep_c5938%7Carginine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12333%7Cfy828944.for.115780-117116.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115780-117116.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115780-117116.Ar_EST_120301b_c12333%7Cfy828944.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14482%7Cprotein.for.116951-118425.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.116951-118425.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.116951-118425.Ar_EST_120301b_c14482%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1997%7Cimpact.for.116977-118066.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.116977-118066.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.116977-118066.Ar_EST_120301b_c1997%7Cimpact.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20372%7C60s.for.118493-119653.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.118493-119653.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.118493-119653.Ar_EST_120301b_rep_c20372%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20437%7C60s.for.118509-119655.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.118509-119655.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.118509-119655.Ar_EST_120301b_rep_c20437%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18561%7C60s.for.118493-119665.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.118493-119665.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.118493-119665.Ar_EST_120301b_rep_c18561%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1306%7Cbay.for.119271-120567.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.119271-120567.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.119271-120567.Ar_EST_120301b_c1306%7Cbay.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11551%7Catp-binding.for.122951-124177.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.122951-124177.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.122951-124177.Ar_EST_120301b_c11551%7Catp-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2796%7Catp-binding.for.122280-123842.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.122280-123842.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.122280-123842.Ar_EST_120301b_c2796%7Catp-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig377%7Csenescence.for.121284-123104.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.121284-123104.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.121284-123104.120301b_Contig377%7Csenescence.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2715%7Catp-binding.for.123362-125173.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.123362-125173.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.123362-125173.Ar_EST_120301b_c2715%7Catp-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15601%7C3-beta.for.124944-126129.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.124944-126129.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.124944-126129.Ar_EST_120301b_c15601%7C3-beta.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1184%7C3-beta.for.125166-126821.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.125166-126821.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.125166-126821.Ar_EST_120301b_c1184%7C3-beta.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1082%7Csyntaxin.for.126182-127650.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.126182-127650.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.126182-127650.120301b_Contig1082%7Csyntaxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14083%7Chypothetical.for.130889-132167.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.130889-132167.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.130889-132167.Ar_EST_120301b_c14083%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2116%7Chat.for.130681-132010.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.130681-132010.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.130681-132010.Ar_EST_120301b_c2116%7Chat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12752%7Cbg01.for.134379-135767.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.134379-135767.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.134379-135767.Ar_EST_120301b_c12752%7Cbg01.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1133%7Cbg04-.for.136477-137733.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.136477-137733.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.136477-137733.Ar_EST_120301b_c1133%7Cbg04-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3822%7Cpiggybac.for.136920-138103.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.136920-138103.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.136920-138103.Ar_EST_120301b_c3822%7Cpiggybac.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c422%7Cmeloidogyne.for.135457-137120.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.135457-137120.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.135457-137120.Ar_EST_120301b_c422%7Cmeloidogyne.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19525%7Caj677057.for.136522-137693.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.136522-137693.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.136522-137693.Ar_EST_120301b_c19525%7Caj677057.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3325%7Cmeloidogyne.for.135463-137087.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.135463-137087.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.135463-137087.Ar_EST_120301b_c3325%7Cmeloidogyne.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8009%7Cbg04-.for.136027-137733.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.136027-137733.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.136027-137733.Ar_EST_120301b_c8009%7Cbg04-.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:55 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:55 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 total clusters:55 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:55 now processing 0 total clusters:55 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:55 now processing 0 total clusters:55 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:55 now processing 0 total clusters:55 now processing 0 ...processing 0 of 2 ...processing 1 of 2 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:29 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:50 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:58 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:52 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:51 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:35 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:33 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091245%7Cgb%7CEFC44893%2E1%7C.for.2058-3448.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.2058-3448.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.2058-3448.gi%7C284091245%7Cgb%7CEFC44893%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088206%7Cgb%7CEFC41871%2E1%7C.for.9726-11381.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.9726-11381.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.9726-11381.gi%7C284088206%7Cgb%7CEFC41871%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090769%7Cgb%7CEFC44419%2E1%7C.for.11879-13257.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.11879-13257.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.11879-13257.gi%7C284090769%7Cgb%7CEFC44419%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092544%7Cgb%7CEFC46186%2E1%7C.for.17599-19499.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.17599-19499.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.17599-19499.gi%7C284092544%7Cgb%7CEFC46186%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085562%7Cgb%7CEFC39245%2E1%7C.for.17599-19490.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.17599-19490.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.17599-19490.gi%7C284085562%7Cgb%7CEFC39245%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092809%7Cgb%7CEFC46449%2E1%7C.for.27176-28278.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.27176-28278.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.27176-28278.gi%7C284092809%7Cgb%7CEFC46449%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088713%7Cgb%7CEFC42375%2E1%7C.for.27173-28341.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.27173-28341.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.27173-28341.gi%7C284088713%7Cgb%7CEFC42375%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097108%7Cgb%7CEFC50735%2E1%7C.for.27176-28269.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.27176-28269.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.27176-28269.gi%7C284097108%7Cgb%7CEFC50735%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096122%7Cgb%7CEFC49751%2E1%7C.for.36570-37856.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.36570-37856.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.36570-37856.gi%7C284096122%7Cgb%7CEFC49751%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097049%7Cgb%7CEFC50676%2E1%7C.for.40766-44415.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.40766-44415.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.40766-44415.gi%7C284097049%7Cgb%7CEFC50676%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082919%7Cgb%7CEFC36629%2E1%7C.for.46933-48362.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.46933-48362.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.46933-48362.gi%7C284082919%7Cgb%7CEFC36629%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092761%7Cgb%7CEFC46402%2E1%7C.for.48607-51519.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.48607-51519.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.48607-51519.gi%7C284092761%7Cgb%7CEFC46402%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096668%7Cgb%7CEFC50295%2E1%7C.for.52038-56344.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.52038-56344.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.52038-56344.gi%7C284096668%7Cgb%7CEFC50295%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090381%7Cgb%7CEFC44033%2E1%7C.for.68085-69508.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.68085-69508.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.68085-69508.gi%7C284090381%7Cgb%7CEFC44033%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089187%7Cgb%7CEFC42846%2E1%7C.for.79484-80433.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.79484-80433.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.79484-80433.gi%7C284089187%7Cgb%7CEFC42846%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088520%7Cgb%7CEFC42183%2E1%7C.for.83220-85117.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.83220-85117.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.83220-85117.gi%7C284088520%7Cgb%7CEFC42183%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096554%7Cgb%7CEFC50182%2E1%7C.for.102484-104225.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.102484-104225.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.102484-104225.gi%7C284096554%7Cgb%7CEFC50182%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091744%7Cgb%7CEFC45389%2E1%7C.for.102814-104225.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.102814-104225.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.102814-104225.gi%7C284091744%7Cgb%7CEFC45389%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089709%7Cgb%7CEFC43365%2E1%7C.for.110724-112340.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.110724-112340.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.110724-112340.gi%7C284089709%7Cgb%7CEFC43365%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094401%7Cgb%7CEFC48035%2E1%7C.for.113245-114583.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.113245-114583.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.113245-114583.gi%7C284094401%7Cgb%7CEFC48035%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.115441-116531.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115441-116531.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115441-116531.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.for.115501-116582.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115501-116582.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115501-116582.gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.for.115498-116531.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115498-116531.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115498-116531.gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.for.115498-116531.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115498-116531.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115498-116531.gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.for.115444-116525.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115444-116525.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115444-116525.gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.for.115492-116870.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115492-116870.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115492-116870.gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.for.115504-116570.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115504-116570.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115504-116570.gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.for.115438-116525.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115438-116525.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115438-116525.gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.for.115480-116636.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115480-116636.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115480-116636.gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.for.115441-116543.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115441-116543.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115441-116543.gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.for.115522-116534.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115522-116534.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115522-116534.gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089974%7Cgb%7CEFC43628%2E1%7C.for.118498-119501.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.118498-119501.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.118498-119501.gi%7C284089974%7Cgb%7CEFC43628%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091629%7Cgb%7CEFC45275%2E1%7C.for.127450-128726.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.127450-128726.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.127450-128726.gi%7C284091629%7Cgb%7CEFC45275%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:36 now processing 0 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:36 now processing 0 total clusters:36 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.13913-15501.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.13913-15501.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.13913-15501.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.17798-19299.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.17798-19299.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.17798-19299.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.26570-28870.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.26570-28870.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.26570-28870.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.31607-32320.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.31607-32320.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.31607-32320.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.36769-37656.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.36769-37656.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.36769-37656.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.37756-39930.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.37756-39930.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.37756-39930.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.40211-41156.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.40211-41156.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.40211-41156.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.45455-48162.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.45455-48162.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.45455-48162.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.63284-64945.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.63284-64945.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.63284-64945.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.68284-69308.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.68284-69308.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.68284-69308.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.73105-74011.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.73105-74011.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.73105-74011.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.75340-76365.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.75340-76365.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.75340-76365.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.110923-112140.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.110923-112140.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.110923-112140.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.112203-114443.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.112203-114443.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.112203-114443.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.118692-119467.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.118692-119467.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.118692-119467.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.121483-122904.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.121483-122904.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.121483-122904.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.125143-126621.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.125143-126621.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.125143-126621.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.135656-137638.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.135656-137638.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.135656-137638.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.2232-3500.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.2232-3500.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.2232-3500.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.9889-11184.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.9889-11184.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.9889-11184.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.15338-16982.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.15338-16982.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.15338-16982.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.17002-18066.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.17002-18066.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.17002-18066.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.20595-24662.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.20595-24662.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.20595-24662.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.28129-29075.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.28129-29075.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.28129-29075.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.29082-30163.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.29082-30163.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.29082-30163.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.30190-32714.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.30190-32714.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.30190-32714.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.35639-36729.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.35639-36729.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.35639-36729.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.40965-44215.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.40965-44215.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.40965-44215.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.48799-51319.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.48799-51319.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.48799-51319.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.52237-56144.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.52237-56144.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.52237-56144.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.59692-61161.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.59692-61161.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.59692-61161.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.61226-62092.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.61226-62092.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.61226-62092.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.66169-67070.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.66169-67070.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.66169-67070.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.80131-82212.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.80131-82212.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.80131-82212.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.82569-86660.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.82569-86660.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.82569-86660.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.86679-91991.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.86679-91991.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.86679-91991.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.102683-104153.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.102683-104153.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.102683-104153.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.109075-111013.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.109075-111013.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.109075-111013.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.115640-116916.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.115640-116916.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.115640-116916.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.117143-118225.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.117143-118225.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.117143-118225.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/40_0.119470-120424.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/40_0.119470-120424.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/40_0.119470-120424.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/41_0.122479-124973.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/41_0.122479-124973.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/41_0.122479-124973.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/42_0.126381-127450.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/42_0.126381-127450.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/42_0.126381-127450.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/43_0.127649-128526.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/43_0.127649-128526.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/43_0.127649-128526.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/44_0.130880-131967.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/44_0.130880-131967.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/44_0.130880-131967.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/45_0.134516-135567.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/45_0.134516-135567.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/45_0.134516-135567.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/46_0.136640-137535.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/46_0.136640-137535.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/46_0.136640-137535.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C34 Length: 50682 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:1 current j:0 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C34.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C34.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:3 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11308%7C---NA---.for.1103-2190.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1103-2190.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1103-2190.Ar_EST_120301b_rep_c11308%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1153%7Cswim.for.26-2179.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.26-2179.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.26-2179.120301b_Contig1153%7Cswim.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19191%7C---NA---.for.1562-3123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1562-3123.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1562-3123.Ar_EST_120301b_c19191%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5150%7C---NA---.for.1214-2476.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1214-2476.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1214-2476.Ar_EST_120301b_rep_c5150%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c231%7Cfamily.for.1007-2594.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1007-2594.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1007-2594.Ar_EST_120301b_c231%7Cfamily.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9632%7Cprotein.for.1527-3329.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1527-3329.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1527-3329.Ar_EST_120301b_rep_c9632%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4785%7Cheat.for.3667-6175.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3667-6175.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3667-6175.Ar_EST_120301b_rep_c4785%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c25%7Cheat.for.3677-6842.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3677-6842.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3677-6842.Ar_EST_120301b_c25%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14633%7Clipophosphoglycan.for.4974-6319.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.4974-6319.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.4974-6319.Ar_EST_120301b_rep_c14633%7Clipophosphoglycan.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10561%7Cphosphatidic.for.6674-8012.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.6674-8012.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.6674-8012.Ar_EST_120301b_c10561%7Cphosphatidic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12466%7Cmaruca_01_m20_smart5-seq1.for.9193-10445.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.9193-10445.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.9193-10445.Ar_EST_120301b_c12466%7Cmaruca_01_m20_smart5-seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig557%7Clyc-8-c11.for.12929-14444.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.12929-14444.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.12929-14444.120301b_Contig557%7Clyc-8-c11.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6187%7Chypothetical.for.12930-14470.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.12930-14470.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.12930-14470.Ar_EST_120301b_rep_c6187%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1369%7Cphospholipase.for.15235-18239.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.15235-18239.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.15235-18239.120301b_Contig1369%7Cphospholipase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16238%7Cactin-related.for.19436-20738.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.19436-20738.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.19436-20738.Ar_EST_120301b_rep_c16238%7Cactin-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6211%7Cactin-related.for.18930-20753.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.18930-20753.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.18930-20753.Ar_EST_120301b_rep_c6211%7Cactin-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig460%7Cactin-related.for.18789-20779.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.18789-20779.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.18789-20779.120301b_Contig460%7Cactin-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9473%7Ccre-arx-3.for.19027-20240.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.19027-20240.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.19027-20240.Ar_EST_120301b_rep_c9473%7Ccre-arx-3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9479%7Cswi2.for.20409-21857.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20409-21857.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20409-21857.Ar_EST_120301b_c9479%7Cswi2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3575%7Cswi.for.21456-23264.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.21456-23264.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.21456-23264.Ar_EST_120301b_c3575%7Cswi.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8684%7Cmeloidogyne.for.23339-24828.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.23339-24828.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.23339-24828.Ar_EST_120301b_c8684%7Cmeloidogyne.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13859%7Cpas.for.24923-26220.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.24923-26220.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.24923-26220.Ar_EST_120301b_c13859%7Cpas.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3752%7Cprotein.for.28758-30821.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.28758-30821.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.28758-30821.Ar_EST_120301b_c3752%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18512%7Catp-dependent.for.29537-30850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.29537-30850.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.29537-30850.Ar_EST_120301b_c18512%7Catp-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c92%7Cproprotein.for.30412-33324.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.30412-33324.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.30412-33324.Ar_EST_120301b_c92%7Cproprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig148%7Cdomain-containing.for.33636-35938.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.33636-35938.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.33636-35938.120301b_Contig148%7Cdomain-containing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1026%7Ccarbohydrate.for.38938-42088.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.38938-42088.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.38938-42088.120301b_Contig1026%7Ccarbohydrate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18266%7Ccbpn%3A.for.42317-43586.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.42317-43586.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.42317-43586.Ar_EST_120301b_c18266%7Ccbpn%3A.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16104%7Coxidoreductase.for.48145-49395.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.48145-49395.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.48145-49395.Ar_EST_120301b_c16104%7Coxidoreductase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18279%7Coxidoreductase.for.48626-49955.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.48626-49955.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.48626-49955.Ar_EST_120301b_c18279%7Coxidoreductase.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:13 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:6 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:13 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:8 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:12 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:9 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:12 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:12 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:8 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:8 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093550%7Cgb%7CEFC47187%2E1%7C.for.2823-4207.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.2823-4207.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.2823-4207.gi%7C284093550%7Cgb%7CEFC47187%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086161%7Cgb%7CEFC39839%2E1%7C.for.3811-6713.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3811-6713.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3811-6713.gi%7C284086161%7Cgb%7CEFC39839%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096519%7Cgb%7CEFC50147%2E1%7C.for.3718-6716.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3718-6716.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3718-6716.gi%7C284096519%7Cgb%7CEFC50147%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096247%7Cgb%7CEFC49875%2E1%7C.for.3811-6683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3811-6683.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3811-6683.gi%7C284096247%7Cgb%7CEFC49875%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C25986841%7Cgb%7CAAM93756%2E1%7C.for.3826-6656.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3826-6656.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3826-6656.gi%7C25986841%7Cgb%7CAAM93756%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091896%7Cgb%7CEFC45540%2E1%7C.for.15058-17428.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.15058-17428.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.15058-17428.gi%7C284091896%7Cgb%7CEFC45540%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086563%7Cgb%7CEFC40239%2E1%7C.for.15070-17413.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.15070-17413.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.15070-17413.gi%7C284086563%7Cgb%7CEFC40239%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083916%7Cgb%7CEFC37614%2E1%7C.for.15061-16741.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.15061-16741.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.15061-16741.gi%7C284083916%7Cgb%7CEFC37614%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083373%7Cgb%7CEFC37077%2E1%7C.for.16725-19001.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.16725-19001.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.16725-19001.gi%7C284083373%7Cgb%7CEFC37077%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082917%7Cgb%7CEFC36627%2E1%7C.for.18929-20742.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.18929-20742.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.18929-20742.gi%7C284082917%7Cgb%7CEFC36627%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096936%7Cgb%7CEFC50563%2E1%7C.for.20691-23059.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20691-23059.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20691-23059.gi%7C284096936%7Cgb%7CEFC50563%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093262%7Cgb%7CEFC46901%2E1%7C.for.20697-23032.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20697-23032.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20697-23032.gi%7C284093262%7Cgb%7CEFC46901%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085362%7Cgb%7CEFC39046%2E1%7C.for.20565-23233.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20565-23233.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20565-23233.gi%7C284085362%7Cgb%7CEFC39046%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093648%7Cgb%7CEFC47285%2E1%7C.for.20688-23206.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20688-23206.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20688-23206.gi%7C284093648%7Cgb%7CEFC47285%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095906%7Cgb%7CEFC49535%2E1%7C.for.20715-23062.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20715-23062.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20715-23062.gi%7C284095906%7Cgb%7CEFC49535%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087958%7Cgb%7CEFC41624%2E1%7C.for.20487-23215.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20487-23215.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20487-23215.gi%7C284087958%7Cgb%7CEFC41624%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096449%7Cgb%7CEFC50077%2E1%7C.for.30726-32926.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.30726-32926.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.30726-32926.gi%7C284096449%7Cgb%7CEFC50077%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089770%7Cgb%7CEFC43425%2E1%7C.for.45290-46981.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.45290-46981.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.45290-46981.gi%7C284089770%7Cgb%7CEFC43425%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093999%7Cgb%7CEFC47635%2E1%7C.for.45308-46900.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.45308-46900.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.45308-46900.gi%7C284093999%7Cgb%7CEFC47635%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084374%7Cgb%7CEFC38067%2E1%7C.for.48179-50148.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.48179-50148.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.48179-50148.gi%7C284084374%7Cgb%7CEFC38067%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:7 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:7 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:6 now processing 0 total clusters:6 now processing 0 total clusters:6 now processing 0 total clusters:6 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:6 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:6 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:9 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.13101-14294.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.13101-14294.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.13101-14294.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.15434-18039.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.15434-18039.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.15434-18039.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.19128-20553.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.19128-20553.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.19128-20553.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.20608-23064.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.20608-23064.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.20608-23064.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.23538-24628.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.23538-24628.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.23538-24628.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.25122-26022.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.25122-26022.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.25122-26022.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.30611-33124.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.30611-33124.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.30611-33124.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.33835-35738.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.33835-35738.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.33835-35738.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.39137-41888.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.39137-41888.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.39137-41888.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.225-2929.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.225-2929.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.225-2929.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.3022-6516.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.3022-6516.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.3022-6516.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.6873-7812.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.6873-7812.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.6873-7812.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.9392-10249.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.9392-10249.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.9392-10249.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.15257-17234.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.15257-17234.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.15257-17234.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.29732-30650.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.29732-30650.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.29732-30650.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.42516-43386.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.42516-43386.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.42516-43386.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.48344-49948.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.48344-49948.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.48344-49948.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C35 Length: 58974 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:4 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:1 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:5 current j:0 j_size:5 current j:1 j_size:5 current j:2 j_size:5 current j:3 j_size:5 current j:4 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C35.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C35.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8607%7Cgtp-binding.for.2-1886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.2-1886.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.2-1886.Ar_EST_120301b_c8607%7Cgtp-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6065%7Csubtilisin-like.for.2365-4444.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.2365-4444.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.2365-4444.Ar_EST_120301b_rep_c6065%7Csubtilisin-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1399%7Cn-ethylmaleimide.for.5160-6458.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.5160-6458.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.5160-6458.Ar_EST_120301b_c1399%7Cn-ethylmaleimide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11943%7Ccytochrome.for.7916-9267.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.7916-9267.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.7916-9267.Ar_EST_120301b_c11943%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9590%7Ccytochrome.for.8478-9742.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.8478-9742.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.8478-9742.Ar_EST_120301b_c9590%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1055%7Cregulator.for.12264-13963.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.12264-13963.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.12264-13963.120301b_Contig1055%7Cregulator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8207%7Ccytochrome.for.14989-17301.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.14989-17301.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.14989-17301.Ar_EST_120301b_c8207%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16878%7Chypothetical.for.18560-19916.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.18560-19916.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.18560-19916.Ar_EST_120301b_c16878%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12427%7Ctelomerase.for.22706-24114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.22706-24114.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.22706-24114.Ar_EST_120301b_c12427%7Ctelomerase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11557%7Cprotein.for.28505-30052.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.28505-30052.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.28505-30052.Ar_EST_120301b_c11557%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16891%7Czinc.for.29355-30729.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.29355-30729.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.29355-30729.Ar_EST_120301b_c16891%7Czinc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14460%7Cspastic.for.33103-34283.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.33103-34283.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.33103-34283.Ar_EST_120301b_c14460%7Cspastic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13834%7Cprotein.for.36324-37549.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.36324-37549.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.36324-37549.Ar_EST_120301b_c13834%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1421%7Ctestis.for.43982-45419.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.43982-45419.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.43982-45419.Ar_EST_120301b_c1421%7Ctestis.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16539%7C---NA---.for.46011-47317.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.46011-47317.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.46011-47317.Ar_EST_120301b_c16539%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11932%7Ce3.for.47499-48777.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.47499-48777.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.47499-48777.Ar_EST_120301b_c11932%7Ce3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12237%7Ctplate.for.52411-53828.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.52411-53828.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.52411-53828.Ar_EST_120301b_c12237%7Ctplate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1748%7Cpredicted.for.54228-55364.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.54228-55364.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.54228-55364.Ar_EST_120301b_c1748%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c112%7Cn-acyl.for.55635-57533.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.55635-57533.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.55635-57533.Ar_EST_120301b_c112%7Cn-acyl.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:52 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:39 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:61 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:47 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:51 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:32 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:44 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:50 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:50 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088120%7Cgb%7CEFC41785%2E1%7C.for.1-1806.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.1-1806.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.1-1806.gi%7C284088120%7Cgb%7CEFC41785%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081631%7Cgb%7CEFC35564%2E1%7C.for.5213-6594.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.5213-6594.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.5213-6594.gi%7C284081631%7Cgb%7CEFC35564%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089466%7Cgb%7CEFC43123%2E1%7C.for.7830-9733.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.7830-9733.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.7830-9733.gi%7C284089466%7Cgb%7CEFC43123%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083307%7Cgb%7CEFC37012%2E1%7C.for.13318-14336.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13318-14336.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13318-14336.gi%7C284083307%7Cgb%7CEFC37012%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090963%7Cgb%7CEFC44612%2E1%7C.for.13747-15125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13747-15125.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13747-15125.gi%7C284090963%7Cgb%7CEFC44612%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.for.14101-15107.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.14101-15107.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.14101-15107.gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081402%7Cgb%7CEFC35430%2E1%7C.for.14110-15161.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.14110-15161.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.14110-15161.gi%7C284081402%7Cgb%7CEFC35430%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096471%7Cgb%7CEFC50099%2E1%7C.for.13768-14993.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13768-14993.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13768-14993.gi%7C284096471%7Cgb%7CEFC50099%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094163%7Cgb%7CEFC47798%2E1%7C.for.13732-15062.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13732-15062.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13732-15062.gi%7C284094163%7Cgb%7CEFC47798%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091693%7Cgb%7CEFC45338%2E1%7C.for.13768-15032.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13768-15032.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13768-15032.gi%7C284091693%7Cgb%7CEFC45338%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095876%7Cgb%7CEFC49505%2E1%7C.for.13825-15098.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13825-15098.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13825-15098.gi%7C284095876%7Cgb%7CEFC49505%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093839%7Cgb%7CEFC47475%2E1%7C.for.14101-15107.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.14101-15107.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.14101-15107.gi%7C284093839%7Cgb%7CEFC47475%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094409%7Cgb%7CEFC48043%2E1%7C.for.15898-17326.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.15898-17326.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.15898-17326.gi%7C284094409%7Cgb%7CEFC48043%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095125%7Cgb%7CEFC48757%2E1%7C.for.15799-17275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.15799-17275.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.15799-17275.gi%7C284095125%7Cgb%7CEFC48757%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080983%7Cgb%7CEFC35253%2E1%7C.for.40888-42371.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42371.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42371.gi%7C284080983%7Cgb%7CEFC35253%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083648%7Cgb%7CEFC37349%2E1%7C.for.40888-42344.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42344.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42344.gi%7C284083648%7Cgb%7CEFC37349%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084263%7Cgb%7CEFC37957%2E1%7C.for.41095-42344.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41095-42344.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41095-42344.gi%7C284084263%7Cgb%7CEFC37957%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096419%7Cgb%7CEFC50047%2E1%7C.for.41068-42347.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41068-42347.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41068-42347.gi%7C284096419%7Cgb%7CEFC50047%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087065%7Cgb%7CEFC40737%2E1%7C.for.41398-42347.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41398-42347.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41398-42347.gi%7C284087065%7Cgb%7CEFC40737%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090976%7Cgb%7CEFC44625%2E1%7C.for.40888-42359.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42359.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42359.gi%7C284090976%7Cgb%7CEFC44625%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081047%7Cgb%7CEFC35275%2E1%7C.for.40888-42131.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42131.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42131.gi%7C284081047%7Cgb%7CEFC35275%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082158%7Cgb%7CEFC35924%2E1%7C.for.40888-42368.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42368.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42368.gi%7C284082158%7Cgb%7CEFC35924%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094671%7Cgb%7CEFC48304%2E1%7C.for.41038-42356.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41038-42356.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41038-42356.gi%7C284094671%7Cgb%7CEFC48304%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086669%7Cgb%7CEFC40344%2E1%7C.for.41263-42338.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41263-42338.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41263-42338.gi%7C284086669%7Cgb%7CEFC40344%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096635%7Cgb%7CEFC50262%2E1%7C.for.43934-46857.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.43934-46857.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.43934-46857.gi%7C284096635%7Cgb%7CEFC50262%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083461%7Cgb%7CEFC37164%2E1%7C.for.55969-57425.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.55969-57425.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.55969-57425.gi%7C284083461%7Cgb%7CEFC37164%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:7 now processing 0 total clusters:7 now processing 0 in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:4 now processing 0 total clusters:4 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:4 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:4 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:2 now processing 0 total clusters:2 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.201-1686.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.201-1686.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.201-1686.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.5359-6394.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.5359-6394.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.5359-6394.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.8029-9542.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.8029-9542.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.8029-9542.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.12463-14925.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.12463-14925.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.12463-14925.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.15188-17126.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.15188-17126.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.15188-17126.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.18743-19716.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.18743-19716.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.18743-19716.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.22905-23923.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.22905-23923.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.22905-23923.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.28704-30529.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.28704-30529.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.28704-30529.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.33302-37349.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.33302-37349.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.33302-37349.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.41087-42171.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.41087-42171.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.41087-42171.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.44133-47117.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.44133-47117.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.44133-47117.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.52610-53628.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.52610-53628.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.52610-53628.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.55834-57333.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.55834-57333.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.55834-57333.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C36 Length: 164851 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:4 current j:0 j_size:4 current j:1 j_size:4 current j:2 j_size:4 current j:3 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C36.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C36.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:8 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:10 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig681%7Cpredicted.for.1612-3428.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.1612-3428.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.1612-3428.120301b_Contig681%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig244%7Cpeptidase.for.1-2453.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.1-2453.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.1-2453.120301b_Contig244%7Cpeptidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10191%7Cprotein.for.7049-8512.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.7049-8512.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.7049-8512.Ar_EST_120301b_c10191%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16233%7Cpre-mrna-processing.for.7813-8914.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.7813-8914.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.7813-8914.Ar_EST_120301b_c16233%7Cpre-mrna-processing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c213%7C14-3-3.for.10760-12363.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.10760-12363.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.10760-12363.Ar_EST_120301b_c213%7C14-3-3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16140%7Culva.for.11130-12229.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.11130-12229.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.11130-12229.Ar_EST_120301b_rep_c16140%7Culva.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5489%7Clipoxygenase.for.8318-9929.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.8318-9929.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.8318-9929.Ar_EST_120301b_rep_c5489%7Clipoxygenase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig419%7Clipoxygenase.for.8371-10887.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.8371-10887.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.8371-10887.120301b_Contig419%7Clipoxygenase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c582%7Cprotein.for.9744-11960.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.9744-11960.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.9744-11960.Ar_EST_120301b_c582%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15523%7Chypothetical.for.12770-14142.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.12770-14142.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.12770-14142.Ar_EST_120301b_c15523%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17561%7Cexported.for.13626-14946.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.13626-14946.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.13626-14946.Ar_EST_120301b_c17561%7Cexported.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3144%7Cexported.for.13714-15185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.13714-15185.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.13714-15185.Ar_EST_120301b_c3144%7Cexported.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4715%7Cpyruvate.for.15987-18058.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.15987-18058.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.15987-18058.Ar_EST_120301b_rep_c4715%7Cpyruvate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8703%7Cadenylate.for.18415-20385.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.18415-20385.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.18415-20385.Ar_EST_120301b_c8703%7Cadenylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14309%7Cpshb008xj07f.for.19602-20811.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.19602-20811.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.19602-20811.Ar_EST_120301b_c14309%7Cpshb008xj07f.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2673%7Chypothetical.for.25046-26505.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.25046-26505.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.25046-26505.Ar_EST_120301b_c2673%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19713%7Cfigitidae.for.25465-26531.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.25465-26531.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.25465-26531.Ar_EST_120301b_c19713%7Cfigitidae.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10941%7Cunnamed.for.25267-26580.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.25267-26580.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.25267-26580.Ar_EST_120301b_c10941%7Cunnamed.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig952%7Calkaline.for.27039-28602.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.27039-28602.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.27039-28602.120301b_Contig952%7Calkaline.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1354%7Cvacuolar.for.29723-31176.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.29723-31176.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.29723-31176.Ar_EST_120301b_c1354%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2160%7Cheat.for.31661-33512.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.31661-33512.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.31661-33512.Ar_EST_120301b_c2160%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig72%7Cheat.for.32921-34988.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.32921-34988.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.32921-34988.120301b_Contig72%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14835%7Cheat.for.33292-34215.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.33292-34215.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.33292-34215.Ar_EST_120301b_c14835%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11328%7Cca00-xx-cs1-019-e03-.for.37444-38809.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.37444-38809.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.37444-38809.Ar_EST_120301b_c11328%7Cca00-xx-cs1-019-e03-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14706%7Capoptosis.for.38105-39109.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.38105-39109.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.38105-39109.Ar_EST_120301b_c14706%7Capoptosis.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13920%7Cnormalized.for.42436-43717.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.42436-43717.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.42436-43717.Ar_EST_120301b_c13920%7Cnormalized.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11389%7C---NA---.for.43257-45228.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.43257-45228.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.43257-45228.Ar_EST_120301b_c11389%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8045%7Chypothetical.for.44921-46139.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.44921-46139.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.44921-46139.Ar_EST_120301b_c8045%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c696%7Cmethyltransferase.for.45942-47448.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.45942-47448.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.45942-47448.Ar_EST_120301b_c696%7Cmethyltransferase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c479%7Cras.for.47229-48708.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.47229-48708.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.47229-48708.Ar_EST_120301b_c479%7Cras.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10880%7Ccagn.for.47999-49358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.47999-49358.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.47999-49358.Ar_EST_120301b_c10880%7Ccagn.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11023%7Cwoods.for.49911-51464.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.49911-51464.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.49911-51464.Ar_EST_120301b_c11023%7Cwoods.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11544%7Cmorn.for.51230-52774.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.51230-52774.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.51230-52774.Ar_EST_120301b_c11544%7Cmorn.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14618%7Cfp661852.for.52446-53539.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.52446-53539.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.52446-53539.Ar_EST_120301b_rep_c14618%7Cfp661852.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6769%7Cfp779243.for.52203-53852.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.52203-53852.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.52203-53852.Ar_EST_120301b_rep_c6769%7Cfp779243.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1926%7Cglyoxylate.for.53381-54954.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.53381-54954.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.53381-54954.Ar_EST_120301b_c1926%7Cglyoxylate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19845%7Cmajor.for.55613-58074.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.55613-58074.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.55613-58074.Ar_EST_120301b_c19845%7Cmajor.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6910%7Cwd-40.for.57551-59082.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.57551-59082.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.57551-59082.Ar_EST_120301b_rep_c6910%7Cwd-40.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16202%7Cmkiaa0840.for.60733-62118.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.60733-62118.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.60733-62118.Ar_EST_120301b_c16202%7Cmkiaa0840.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1072%7Czinc.for.61536-63167.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.61536-63167.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.61536-63167.Ar_EST_120301b_c1072%7Czinc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7880%7Cprotein.for.64297-66068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.64297-66068.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.64297-66068.Ar_EST_120301b_c7880%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19724%7Ciris.for.63956-65289.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.63956-65289.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.63956-65289.Ar_EST_120301b_c19724%7Ciris.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18072%7C3-carboxymuconate.for.71894-73072.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.71894-73072.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.71894-73072.Ar_EST_120301b_c18072%7C3-carboxymuconate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18444%7C60s.for.80598-81815.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.80598-81815.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.80598-81815.Ar_EST_120301b_c18444%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig241%7Cpredicted.for.82554-84883.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.82554-84883.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.82554-84883.120301b_Contig241%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17780%7Cssalplnb505110.for.82703-83944.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.82703-83944.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.82703-83944.Ar_EST_120301b_c17780%7Cssalplnb505110.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15355%7C---NA---.for.89954-91419.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.89954-91419.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.89954-91419.Ar_EST_120301b_c15355%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17615%7Cdk939318.for.91151-92547.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.91151-92547.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.91151-92547.Ar_EST_120301b_c17615%7Cdk939318.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1920%7Cloc100125160.for.93005-94506.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.93005-94506.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.93005-94506.Ar_EST_120301b_c1920%7Cloc100125160.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c326%7Cpeptide-n.for.94452-96001.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.94452-96001.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.94452-96001.Ar_EST_120301b_c326%7Cpeptide-n.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1414%7Cpredicted.for.96429-97878.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.96429-97878.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.96429-97878.Ar_EST_120301b_c1414%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16511%7Cprotein.for.100071-101309.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100071-101309.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100071-101309.Ar_EST_120301b_c16511%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17541%7Csec14l1.for.100091-101441.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100091-101441.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100091-101441.Ar_EST_120301b_c17541%7Csec14l1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8021%7Cguanine.for.100862-102783.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100862-102783.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100862-102783.Ar_EST_120301b_c8021%7Cguanine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14826%7Cphenazine.for.112041-113316.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.112041-113316.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.112041-113316.Ar_EST_120301b_c14826%7Cphenazine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8891%7Cmacro.for.112626-114075.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.112626-114075.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.112626-114075.Ar_EST_120301b_c8891%7Cmacro.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9485%7Cer-golgi.for.113492-115258.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.113492-115258.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.113492-115258.Ar_EST_120301b_c9485%7Cer-golgi.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9610%7Cpeptide.for.115387-116807.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.115387-116807.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.115387-116807.Ar_EST_120301b_c9610%7Cpeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8797%7Cpseudouridine.for.116507-118099.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.116507-118099.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.116507-118099.Ar_EST_120301b_c8797%7Cpseudouridine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4203%7Cmitogen-activated.for.117483-119541.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117483-119541.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117483-119541.Ar_EST_120301b_rep_c4203%7Cmitogen-activated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig609%7Cmitogen-activated.for.118248-119740.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118248-119740.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118248-119740.120301b_Contig609%7Cmitogen-activated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20137%7Cchromatin.for.121160-123912.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.121160-123912.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.121160-123912.Ar_EST_120301b_c20137%7Cchromatin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7867%7Cpredicted.for.123600-125572.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.123600-125572.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.123600-125572.Ar_EST_120301b_c7867%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18812%7Cmetal.for.123289-124801.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.123289-124801.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.123289-124801.Ar_EST_120301b_c18812%7Cmetal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2196%7Cchromosome.for.124897-126496.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.124897-126496.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.124897-126496.Ar_EST_120301b_c2196%7Cchromosome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13274%7Cribose-5-phosphate.for.127761-129064.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.127761-129064.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.127761-129064.Ar_EST_120301b_c13274%7Cribose-5-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12734%7Cribose-5-phosphate.for.127554-129000.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.127554-129000.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.127554-129000.Ar_EST_120301b_c12734%7Cribose-5-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c862%7Cgtp-binding.for.129545-130880.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129545-130880.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129545-130880.Ar_EST_120301b_c862%7Cgtp-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12075%7Cras-related.for.129414-130749.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129414-130749.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129414-130749.Ar_EST_120301b_c12075%7Cras-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12517%7Cks20025f06.for.130671-131613.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.130671-131613.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.130671-131613.Ar_EST_120301b_c12517%7Cks20025f06.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15951%7Csplicing.for.130942-132303.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.130942-132303.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.130942-132303.Ar_EST_120301b_c15951%7Csplicing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14460%7Cspastic.for.140331-141326.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.140331-141326.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.140331-141326.Ar_EST_120301b_c14460%7Cspastic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11557%7Cprotein.for.144408-145922.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.144408-145922.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.144408-145922.Ar_EST_120301b_c11557%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16858%7Csensor.for.147185-148571.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.147185-148571.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.147185-148571.Ar_EST_120301b_c16858%7Csensor.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7923%7Cprotein.for.150560-152432.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.150560-152432.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.150560-152432.Ar_EST_120301b_c7923%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2557%7Ccentromere.for.150215-152133.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.150215-152133.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.150215-152133.Ar_EST_120301b_c2557%7Ccentromere.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16845%7Ccglsc1ng-t3-006_k21_17apr2009_085.for.159428-160814.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.159428-160814.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.159428-160814.Ar_EST_120301b_c16845%7Ccglsc1ng-t3-006_k21_17apr2009_085.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2868%7Clongevity.for.162089-164040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.162089-164040.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.162089-164040.Ar_EST_120301b_c2868%7Clongevity.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 total clusters:57 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:57 now processing 0 total clusters:57 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:41 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:33 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:29 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:53 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:46 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:46 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:58 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:32 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090638%7Cgb%7CEFC44289%2E1%7C.for.2846-5161.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.2846-5161.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.2846-5161.gi%7C284090638%7Cgb%7CEFC44289%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092635%7Cgb%7CEFC46276%2E1%7C.for.6522-8824.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.6522-8824.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.6522-8824.gi%7C284092635%7Cgb%7CEFC46276%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087213%7Cgb%7CEFC40884%2E1%7C.for.15979-17888.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.15979-17888.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.15979-17888.gi%7C284087213%7Cgb%7CEFC40884%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096878%7Cgb%7CEFC50505%2E1%7C.for.17488-18548.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.17488-18548.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.17488-18548.gi%7C284096878%7Cgb%7CEFC50505%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097085%7Cgb%7CEFC50712%2E1%7C.for.23058-25469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.23058-25469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.23058-25469.gi%7C284097085%7Cgb%7CEFC50712%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090588%7Cgb%7CEFC44239%2E1%7C.for.31826-34626.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.31826-34626.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.31826-34626.gi%7C284090588%7Cgb%7CEFC44239%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091692%7Cgb%7CEFC45337%2E1%7C.for.31688-35097.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.31688-35097.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.31688-35097.gi%7C284091692%7Cgb%7CEFC45337%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096964%7Cgb%7CEFC50591%2E1%7C.for.47338-48695.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.47338-48695.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.47338-48695.gi%7C284096964%7Cgb%7CEFC50591%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092317%7Cgb%7CEFC45959%2E1%7C.for.47227-48713.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.47227-48713.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.47227-48713.gi%7C284092317%7Cgb%7CEFC45959%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094675%7Cgb%7CEFC48308%2E1%7C.for.51188-52570.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.51188-52570.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.51188-52570.gi%7C284094675%7Cgb%7CEFC48308%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094767%7Cgb%7CEFC48400%2E1%7C.for.53430-54985.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.53430-54985.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.53430-54985.gi%7C284094767%7Cgb%7CEFC48400%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090385%7Cgb%7CEFC44037%2E1%7C.for.55683-57985.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.55683-57985.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.55683-57985.gi%7C284090385%7Cgb%7CEFC44037%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087326%7Cgb%7CEFC40996%2E1%7C.for.55683-58012.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.55683-58012.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.55683-58012.gi%7C284087326%7Cgb%7CEFC40996%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089393%7Cgb%7CEFC43051%2E1%7C.for.58456-60867.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.58456-60867.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.58456-60867.gi%7C284089393%7Cgb%7CEFC43051%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092889%7Cgb%7CEFC46529%2E1%7C.for.58606-60831.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.58606-60831.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.58606-60831.gi%7C284092889%7Cgb%7CEFC46529%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093346%7Cgb%7CEFC46984%2E1%7C.for.93791-96386.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.93791-96386.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.93791-96386.gi%7C284093346%7Cgb%7CEFC46984%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091412%7Cgb%7CEFC45059%2E1%7C.for.98827-100405.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.98827-100405.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.98827-100405.gi%7C284091412%7Cgb%7CEFC45059%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092652%7Cgb%7CEFC46293%2E1%7C.for.100758-102737.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100758-102737.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100758-102737.gi%7C284092652%7Cgb%7CEFC46293%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084774%7Cgb%7CEFC38463%2E1%7C.for.101315-102716.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.101315-102716.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.101315-102716.gi%7C284084774%7Cgb%7CEFC38463%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084712%7Cgb%7CEFC38402%2E1%7C.for.100785-102737.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100785-102737.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100785-102737.gi%7C284084712%7Cgb%7CEFC38402%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083518%7Cgb%7CEFC37220%2E1%7C.for.100776-102716.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100776-102716.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100776-102716.gi%7C284083518%7Cgb%7CEFC37220%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090770%7Cgb%7CEFC44420%2E1%7C.for.100977-102713.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100977-102713.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100977-102713.gi%7C284090770%7Cgb%7CEFC44420%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095980%7Cgb%7CEFC49609%2E1%7C.for.100770-102716.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100770-102716.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100770-102716.gi%7C284095980%7Cgb%7CEFC49609%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091782%7Cgb%7CEFC45427%2E1%7C.for.100941-101983.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100941-101983.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100941-101983.gi%7C284091782%7Cgb%7CEFC45427%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085503%7Cgb%7CEFC39186%2E1%7C.for.100785-102746.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100785-102746.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100785-102746.gi%7C284085503%7Cgb%7CEFC39186%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093388%7Cgb%7CEFC47026%2E1%7C.for.100995-101983.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100995-101983.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100995-101983.gi%7C284093388%7Cgb%7CEFC47026%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095344%7Cgb%7CEFC48975%2E1%7C.for.100782-102776.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100782-102776.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100782-102776.gi%7C284095344%7Cgb%7CEFC48975%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095754%7Cgb%7CEFC49384%2E1%7C.for.100851-102731.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100851-102731.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100851-102731.gi%7C284095754%7Cgb%7CEFC49384%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084944%7Cgb%7CEFC38632%2E1%7C.for.111621-113308.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.111621-113308.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.111621-113308.gi%7C284084944%7Cgb%7CEFC38632%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080802%7Cgb%7CEFC35193%2E1%7C.for.112682-114013.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.112682-114013.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.112682-114013.gi%7C284080802%7Cgb%7CEFC35193%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094932%7Cgb%7CEFC48564%2E1%7C.for.112845-113989.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.112845-113989.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.112845-113989.gi%7C284094932%7Cgb%7CEFC48564%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087397%7Cgb%7CEFC41067%2E1%7C.for.115312-117053.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.115312-117053.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.115312-117053.gi%7C284087397%7Cgb%7CEFC41067%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096928%7Cgb%7CEFC50555%2E1%7C.for.116338-118126.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.116338-118126.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.116338-118126.gi%7C284096928%7Cgb%7CEFC50555%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082445%7Cgb%7CEFC36163%2E1%7C.for.118317-119683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118317-119683.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118317-119683.gi%7C284082445%7Cgb%7CEFC36163%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091587%7Cgb%7CEFC45233%2E1%7C.for.118145-119079.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118145-119079.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118145-119079.gi%7C284091587%7Cgb%7CEFC45233%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097165%7Cgb%7CEFC50792%2E1%7C.for.117849-119659.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117849-119659.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117849-119659.gi%7C284097165%7Cgb%7CEFC50792%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081068%7Cgb%7CEFC35282%2E1%7C.for.117846-119242.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117846-119242.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117846-119242.gi%7C284081068%7Cgb%7CEFC35282%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094136%7Cgb%7CEFC47771%2E1%7C.for.117685-119707.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117685-119707.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117685-119707.gi%7C284094136%7Cgb%7CEFC47771%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090349%7Cgb%7CEFC44001%2E1%7C.for.117739-119683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117739-119683.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117739-119683.gi%7C284090349%7Cgb%7CEFC44001%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082443%7Cgb%7CEFC36161%2E1%7C.for.117712-119016.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117712-119016.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117712-119016.gi%7C284082443%7Cgb%7CEFC36161%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085688%7Cgb%7CEFC39370%2E1%7C.for.117739-119659.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117739-119659.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117739-119659.gi%7C284085688%7Cgb%7CEFC39370%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090237%7Cgb%7CEFC43890%2E1%7C.for.117858-119587.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117858-119587.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117858-119587.gi%7C284090237%7Cgb%7CEFC43890%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096572%7Cgb%7CEFC50200%2E1%7C.for.118121-119272.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118121-119272.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118121-119272.gi%7C284096572%7Cgb%7CEFC50200%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088224%7Cgb%7CEFC41889%2E1%7C.for.118154-119554.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118154-119554.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118154-119554.gi%7C284088224%7Cgb%7CEFC41889%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090447%7Cgb%7CEFC44099%2E1%7C.for.118118-119551.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118118-119551.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118118-119551.gi%7C284090447%7Cgb%7CEFC44099%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083991%7Cgb%7CEFC37688%2E1%7C.for.117849-119671.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117849-119671.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117849-119671.gi%7C284083991%7Cgb%7CEFC37688%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089853%7Cgb%7CEFC43508%2E1%7C.for.118106-119551.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118106-119551.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118106-119551.gi%7C284089853%7Cgb%7CEFC43508%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088374%7Cgb%7CEFC42038%2E1%7C.for.118139-119554.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118139-119554.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118139-119554.gi%7C284088374%7Cgb%7CEFC42038%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086220%7Cgb%7CEFC39898%2E1%7C.for.118022-119575.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118022-119575.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118022-119575.gi%7C284086220%7Cgb%7CEFC39898%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086311%7Cgb%7CEFC39988%2E1%7C.for.118371-119557.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118371-119557.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118371-119557.gi%7C284086311%7Cgb%7CEFC39988%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084616%7Cgb%7CEFC38307%2E1%7C.for.117852-119542.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117852-119542.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117852-119542.gi%7C284084616%7Cgb%7CEFC38307%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087921%7Cgb%7CEFC41587%2E1%7C.for.118590-119671.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118590-119671.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118590-119671.gi%7C284087921%7Cgb%7CEFC41587%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089145%7Cgb%7CEFC42804%2E1%7C.for.117846-119668.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117846-119668.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117846-119668.gi%7C284089145%7Cgb%7CEFC42804%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090070%7Cgb%7CEFC43724%2E1%7C.for.118157-119560.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118157-119560.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118157-119560.gi%7C284090070%7Cgb%7CEFC43724%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093567%7Cgb%7CEFC47204%2E1%7C.for.118106-119281.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118106-119281.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118106-119281.gi%7C284093567%7Cgb%7CEFC47204%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097055%7Cgb%7CEFC50682%2E1%7C.for.119366-121330.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.119366-121330.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.119366-121330.gi%7C284097055%7Cgb%7CEFC50682%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088135%7Cgb%7CEFC41800%2E1%7C.for.127290-128284.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.127290-128284.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.127290-128284.gi%7C284088135%7Cgb%7CEFC41800%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092330%7Cgb%7CEFC45972%2E1%7C.for.129550-130820.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129550-130820.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129550-130820.gi%7C284092330%7Cgb%7CEFC45972%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085175%7Cgb%7CEFC38861%2E1%7C.for.129559-130835.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129559-130835.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129559-130835.gi%7C284085175%7Cgb%7CEFC38861%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087489%7Cgb%7CEFC41158%2E1%7C.for.129436-130832.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129436-130832.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129436-130832.gi%7C284087489%7Cgb%7CEFC41158%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086692%7Cgb%7CEFC40367%2E1%7C.for.129559-130835.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129559-130835.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129559-130835.gi%7C284086692%7Cgb%7CEFC40367%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093218%7Cgb%7CEFC46857%2E1%7C.for.129559-130811.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129559-130811.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129559-130811.gi%7C284093218%7Cgb%7CEFC46857%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095576%7Cgb%7CEFC49206%2E1%7C.for.129424-130829.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129424-130829.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129424-130829.gi%7C284095576%7Cgb%7CEFC49206%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080992%7Cgb%7CEFC35256%2E1%7C.for.129547-130676.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129547-130676.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129547-130676.gi%7C284080992%7Cgb%7CEFC35256%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089507%7Cgb%7CEFC43164%2E1%7C.for.129559-130829.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129559-130829.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129559-130829.gi%7C284089507%7Cgb%7CEFC43164%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092994%7Cgb%7CEFC46634%2E1%7C.for.129670-130817.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129670-130817.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129670-130817.gi%7C284092994%7Cgb%7CEFC46634%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093669%7Cgb%7CEFC47306%2E1%7C.for.130259-132474.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.130259-132474.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.130259-132474.gi%7C284093669%7Cgb%7CEFC47306%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090027%7Cgb%7CEFC43681%2E1%7C.for.132434-133461.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.132434-133461.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.132434-133461.gi%7C284090027%7Cgb%7CEFC43681%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089533%7Cgb%7CEFC43190%2E1%7C.for.150502-152561.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.150502-152561.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.150502-152561.gi%7C284089533%7Cgb%7CEFC43190%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088991%7Cgb%7CEFC42651%2E1%7C.for.153131-154812.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.153131-154812.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.153131-154812.gi%7C284088991%7Cgb%7CEFC42651%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087025%7Cgb%7CEFC40697%2E1%7C.for.153125-154812.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.153125-154812.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.153125-154812.gi%7C284087025%7Cgb%7CEFC40697%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096724%7Cgb%7CEFC50351%2E1%7C.for.157597-158705.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.157597-158705.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.157597-158705.gi%7C284096724%7Cgb%7CEFC50351%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 10 ...processing 1 of 10 ...processing 2 of 10 ...processing 3 of 10 ...processing 4 of 10 ...processing 5 of 10 ...processing 6 of 10 ...processing 7 of 10 ...processing 8 of 10 ...processing 9 of 10 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:17 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:17 now processing 0 total clusters:17 now processing 0 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:17 now processing 0 total clusters:17 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:26 now processing 0 total clusters:26 now processing 0 total clusters:26 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 ...processing 0 of 10 ...processing 1 of 10 ...processing 2 of 10 ...processing 3 of 10 ...processing 4 of 10 ...processing 5 of 10 ...processing 6 of 10 ...processing 7 of 10 ...processing 8 of 10 ...processing 9 of 10 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:37 now processing 0 total clusters:37 now processing 0 total clusters:37 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.0-3228.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.0-3228.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.0-3228.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.12969-14985.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.12969-14985.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.12969-14985.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.23257-26383.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.23257-26383.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.23257-26383.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.50110-51272.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.50110-51272.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.50110-51272.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.51429-54785.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.51429-54785.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.51429-54785.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.57750-60667.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.57750-60667.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.57750-60667.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.60932-62967.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.60932-62967.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.60932-62967.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.82753-84683.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.82753-84683.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.82753-84683.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.90153-92347.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.90153-92347.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.90153-92347.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.100270-101241.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.100270-101241.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.100270-101241.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.115511-119540.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.115511-119540.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.115511-119540.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.119565-121130.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.119565-121130.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.119565-121130.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.121359-126296.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.121359-126296.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.121359-126296.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.127489-128084.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.127489-128084.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.127489-128084.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.153119-154724.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.153119-154724.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.153119-154724.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.3045-4961.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.3045-4961.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.3045-4961.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.6721-10687.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.6721-10687.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.6721-10687.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.16178-18351.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.16178-18351.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.16178-18351.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.18609-20623.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.18609-20623.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.18609-20623.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.27238-28402.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.27238-28402.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.27238-28402.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.31855-34897.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.31855-34897.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.31855-34897.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.37643-39024.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.37643-39024.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.37643-39024.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.42626-43522.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.42626-43522.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.42626-43522.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.46141-47248.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.46141-47248.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.46141-47248.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.47426-49166.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.47426-49166.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.47426-49166.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.55882-57812.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.55882-57812.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.55882-57812.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.64155-65868.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.64155-65868.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.64155-65868.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.72064-72872.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.72064-72872.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.72064-72872.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.80797-81615.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.80797-81615.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.80797-81615.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.93204-96186.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.93204-96186.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.93204-96186.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.96628-97678.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.96628-97678.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.96628-97678.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.99026-100205.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.99026-100205.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.99026-100205.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.100957-102583.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.100957-102583.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.100957-102583.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.111820-115058.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.111820-115058.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.111820-115058.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.127753-128864.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.127753-128864.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.127753-128864.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.129613-132274.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.129613-132274.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.129613-132274.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.140372-141147.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.140372-141147.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.140372-141147.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.144590-145738.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.144590-145738.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.144590-145738.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.147384-148390.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.147384-148390.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.147384-148390.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.150414-152436.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.150414-152436.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.150414-152436.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/40_0.157796-158505.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/40_0.157796-158505.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/40_0.157796-158505.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/41_0.159627-160614.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/41_0.159627-160614.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/41_0.159627-160614.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/42_0.162288-163840.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/42_0.162288-163840.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/42_0.162288-163840.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C37 Length: 131203 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:4 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:4 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:4 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:7 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:3 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:5 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:6 current j:0 j_size:6 current j:1 j_size:6 current j:2 j_size:6 current j:3 j_size:6 current j:4 j_size:6 current j:5 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C37.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C37.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12507%7Ccs00-c2-003-048-e05-.for.491-1869.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.491-1869.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.491-1869.Ar_EST_120301b_c12507%7Ccs00-c2-003-048-e05-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14016%7C000601kaaa001072ht.for.4721-5746.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.4721-5746.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.4721-5746.Ar_EST_120301b_rep_c14016%7C000601kaaa001072ht.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6435%7C000601kaaa001072ht.for.4632-5746.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.4632-5746.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.4632-5746.Ar_EST_120301b_rep_c6435%7C000601kaaa001072ht.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4185%7C000601kaaa001072ht.for.4067-5991.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.4067-5991.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.4067-5991.Ar_EST_120301b_rep_c4185%7C000601kaaa001072ht.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16295%7Ccalcineurin.for.5634-7049.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.5634-7049.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.5634-7049.Ar_EST_120301b_c16295%7Ccalcineurin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12858%7Cran-binding.for.7174-8599.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.7174-8599.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.7174-8599.Ar_EST_120301b_c12858%7Cran-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3327%7Cran-binding.for.6907-8456.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.6907-8456.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.6907-8456.Ar_EST_120301b_c3327%7Cran-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1425%7Cprotein.for.8613-11356.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.8613-11356.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.8613-11356.Ar_EST_120301b_c1425%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6272%7Cprotein.for.9901-11336.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.9901-11336.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.9901-11336.Ar_EST_120301b_rep_c6272%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4396%7Cprotein.for.9311-11267.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.9311-11267.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.9311-11267.Ar_EST_120301b_rep_c4396%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14041%7Cvacuolar.for.9928-10981.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.9928-10981.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.9928-10981.Ar_EST_120301b_rep_c14041%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13503%7Cvacuolar.for.9120-10058.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.9120-10058.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.9120-10058.Ar_EST_120301b_rep_c13503%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c404%7Cvacuolar.for.15625-17344.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.15625-17344.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.15625-17344.Ar_EST_120301b_c404%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18351%7C---NA---.for.17275-18537.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.17275-18537.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.17275-18537.Ar_EST_120301b_rep_c18351%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12162%7Cvacuolar.for.18168-19578.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.18168-19578.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.18168-19578.Ar_EST_120301b_c12162%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2368%7Cfp322549.for.19883-21105.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.19883-21105.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.19883-21105.Ar_EST_120301b_c2368%7Cfp322549.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9387%7Cdiphthamide.for.26530-28351.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.26530-28351.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.26530-28351.Ar_EST_120301b_c9387%7Cdiphthamide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2037%7Cui-ff-if0-abs-g-23-0-.for.28217-29702.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.28217-29702.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.28217-29702.Ar_EST_120301b_c2037%7Cui-ff-if0-abs-g-23-0-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17943%7Cdimethyladenosine.for.29578-30676.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.29578-30676.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.29578-30676.Ar_EST_120301b_c17943%7Cdimethyladenosine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13089%7Cbaac-.for.30820-32167.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.30820-32167.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.30820-32167.Ar_EST_120301b_c13089%7Cbaac-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2504%7Crhodanese.for.31745-33327.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.31745-33327.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.31745-33327.Ar_EST_120301b_c2504%7Crhodanese.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1282%7Cextracellular.for.33470-35788.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33470-35788.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33470-35788.120301b_Contig1282%7Cextracellular.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12161%7Cvacuolar.for.38373-40000.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.38373-40000.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.38373-40000.Ar_EST_120301b_c12161%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig790%7Cvacuolar.for.37386-39178.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.37386-39178.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.37386-39178.120301b_Contig790%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1270%7Cvacuolar.for.39529-40776.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.39529-40776.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.39529-40776.Ar_EST_120301b_c1270%7Cvacuolar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12489%7Cpenicillin.for.40597-42131.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.40597-42131.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.40597-42131.Ar_EST_120301b_c12489%7Cpenicillin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18123%7Cbeta-lactam.for.41777-43536.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.41777-43536.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.41777-43536.Ar_EST_120301b_c18123%7Cbeta-lactam.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9957%7Cnicotinate-nucleotide.for.43386-44881.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.43386-44881.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.43386-44881.Ar_EST_120301b_c9957%7Cnicotinate-nucleotide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8570%7Cprotein.for.44400-46657.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.44400-46657.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.44400-46657.Ar_EST_120301b_c8570%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17383%7Cdis3-like.for.46455-47626.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.46455-47626.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.46455-47626.Ar_EST_120301b_c17383%7Cdis3-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9772%7Cribonuclease.for.47164-48608.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.47164-48608.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.47164-48608.Ar_EST_120301b_c9772%7Cribonuclease.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c911%7Cww.for.49424-50682.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.49424-50682.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.49424-50682.Ar_EST_120301b_c911%7Cww.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17350%7Cpre-mrna-processing.for.49950-51324.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.49950-51324.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.49950-51324.Ar_EST_120301b_c17350%7Cpre-mrna-processing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3739%7Cmagnesium.for.50593-52588.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.50593-52588.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.50593-52588.Ar_EST_120301b_c3739%7Cmagnesium.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13962%7Chypothetical.for.52735-53994.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.52735-53994.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.52735-53994.Ar_EST_120301b_c13962%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c754%7Cixodes.for.53555-55026.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.53555-55026.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.53555-55026.Ar_EST_120301b_c754%7Cixodes.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12519%7C---NA---.for.53383-54729.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.53383-54729.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.53383-54729.Ar_EST_120301b_c12519%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9860%7Cmitochondrial.for.54379-56046.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.54379-56046.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.54379-56046.Ar_EST_120301b_c9860%7Cmitochondrial.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10748%7Cprotein.for.55764-57467.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.55764-57467.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.55764-57467.Ar_EST_120301b_c10748%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1156%7Cring.for.57207-58362.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.57207-58362.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.57207-58362.120301b_Contig1156%7Cring.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3551%7Cinosine.for.58094-59535.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.58094-59535.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.58094-59535.Ar_EST_120301b_c3551%7Cinosine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13720%7Caig2.for.59895-61233.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.59895-61233.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.59895-61233.Ar_EST_120301b_c13720%7Caig2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3065%7Caig2.for.59386-60746.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.59386-60746.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.59386-60746.Ar_EST_120301b_c3065%7Caig2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13535%7Cagencourt_85392014.for.59437-60831.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.59437-60831.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.59437-60831.Ar_EST_120301b_c13535%7Cagencourt_85392014.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6824%7C26s.for.61052-62221.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.61052-62221.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.61052-62221.Ar_EST_120301b_rep_c6824%7C26s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13614%7Cglucose-6-phosphate.for.63769-64983.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.63769-64983.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.63769-64983.Ar_EST_120301b_rep_c13614%7Cglucose-6-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17330%7Cglucose-6-phosphate.for.63507-64746.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.63507-64746.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.63507-64746.Ar_EST_120301b_c17330%7Cglucose-6-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1053%7Cglucose-6-phosphate.for.62782-64983.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.62782-64983.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.62782-64983.120301b_Contig1053%7Cglucose-6-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14588%7Cglucose-6-phosphate.for.63555-64786.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.63555-64786.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.63555-64786.Ar_EST_120301b_rep_c14588%7Cglucose-6-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig737%7Catp-dependent.for.64484-66186.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.64484-66186.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.64484-66186.120301b_Contig737%7Catp-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15766%7Cuf439.for.68551-69854.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.68551-69854.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.68551-69854.Ar_EST_120301b_c15766%7Cuf439.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12200%7C---NA---.for.70153-71070.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.70153-71070.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.70153-71070.Ar_EST_120301b_rep_c12200%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5884%7Cperoxisome.for.69596-71063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.69596-71063.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.69596-71063.Ar_EST_120301b_rep_c5884%7Cperoxisome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16068%7Cbrainf100763c7.for.70334-71744.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.70334-71744.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.70334-71744.Ar_EST_120301b_c16068%7Cbrainf100763c7.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8312%7C6-phosphogluconolactonase.for.71635-73107.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.71635-73107.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.71635-73107.Ar_EST_120301b_c8312%7C6-phosphogluconolactonase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19105%7C6-phosphogluconolactonase.for.71404-72896.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.71404-72896.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.71404-72896.Ar_EST_120301b_c19105%7C6-phosphogluconolactonase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9286%7Cdual.for.72557-73881.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.72557-73881.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.72557-73881.Ar_EST_120301b_c9286%7Cdual.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1071%7C5.for.73667-75687.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.73667-75687.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.73667-75687.120301b_Contig1071%7C5.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10743%7Cbtb.for.77101-78400.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.77101-78400.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.77101-78400.Ar_EST_120301b_c10743%7Cbtb.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11327%7Cprotein.for.77757-79514.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.77757-79514.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.77757-79514.Ar_EST_120301b_c11327%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15586%7Cphaseolus.for.80442-81906.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.80442-81906.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.80442-81906.Ar_EST_120301b_c15586%7Cphaseolus.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11139%7Csymbiotic.for.83479-84775.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.83479-84775.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.83479-84775.Ar_EST_120301b_c11139%7Csymbiotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig892%7Cregulator.for.87573-89936.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.87573-89936.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.87573-89936.120301b_Contig892%7Cregulator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1263%7C-dimethylguanosine.for.89157-90558.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.89157-90558.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.89157-90558.Ar_EST_120301b_c1263%7C-dimethylguanosine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2059%7Cn.for.89882-91416.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.89882-91416.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.89882-91416.Ar_EST_120301b_c2059%7Cn.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11524%7Clikely.for.90627-91691.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.90627-91691.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.90627-91691.Ar_EST_120301b_c11524%7Clikely.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16790%7Cchp.for.93546-94847.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.93546-94847.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.93546-94847.Ar_EST_120301b_c16790%7Cchp.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18329%7C---NA---.for.94213-95227.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.94213-95227.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.94213-95227.Ar_EST_120301b_rep_c18329%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20520%7Cwd-repeat.for.95947-98462.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.95947-98462.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.95947-98462.Ar_EST_120301b_c20520%7Cwd-repeat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c880%7C---NA---.for.98021-99356.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.98021-99356.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.98021-99356.Ar_EST_120301b_c880%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c173%7Cprotein.for.98627-100080.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.98627-100080.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.98627-100080.Ar_EST_120301b_c173%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19251%7Ceb3rody01bclmk.for.99458-100778.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.99458-100778.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.99458-100778.Ar_EST_120301b_c19251%7Ceb3rody01bclmk.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig723%7Cprotein.for.100478-102532.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.100478-102532.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.100478-102532.120301b_Contig723%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2239%7Cprotein.for.101740-103409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.101740-103409.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.101740-103409.Ar_EST_120301b_c2239%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1305%7Cpredicted.for.103067-104669.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.103067-104669.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.103067-104669.120301b_Contig1305%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig198%7Cphospholipid-binding.for.103629-105872.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.103629-105872.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.103629-105872.120301b_Contig198%7Cphospholipid-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7974%7Cacetyl-.for.108069-109618.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.108069-109618.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.108069-109618.Ar_EST_120301b_c7974%7Cacetyl-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16015%7Ccg17746-.for.109104-110368.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.109104-110368.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.109104-110368.Ar_EST_120301b_rep_c16015%7Ccg17746-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4490%7Cprotein.for.108968-110877.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.108968-110877.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.108968-110877.Ar_EST_120301b_rep_c4490%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4669%7Cprotein.for.108973-110818.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.108973-110818.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.108973-110818.Ar_EST_120301b_rep_c4669%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13688%7Cpredicted.for.109133-110247.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.109133-110247.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.109133-110247.Ar_EST_120301b_rep_c13688%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20276%7Cprotein.for.110214-111786.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.110214-111786.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.110214-111786.Ar_EST_120301b_c20276%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1941%7Catpase.for.111493-112784.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.111493-112784.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.111493-112784.Ar_EST_120301b_c1941%7Catpase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2591%7Cprotein.for.113440-115358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.113440-115358.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.113440-115358.Ar_EST_120301b_c2591%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7163%7Ceukaryotic.for.117437-119179.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117437-119179.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117437-119179.Ar_EST_120301b_rep_c7163%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4765%7Cded1p.for.117970-119554.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117970-119554.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117970-119554.Ar_EST_120301b_rep_c4765%7Cded1p.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19714%7Ceukaryotic.for.117455-118809.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117455-118809.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117455-118809.Ar_EST_120301b_rep_c19714%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10202%7Ceukaryotic.for.117728-119153.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117728-119153.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117728-119153.Ar_EST_120301b_rep_c10202%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11350%7Cmitogen-activated.for.123622-124964.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.123622-124964.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.123622-124964.Ar_EST_120301b_c11350%7Cmitogen-activated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2610%7Caromatic.for.124921-126417.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.124921-126417.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.124921-126417.Ar_EST_120301b_c2610%7Caromatic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11315%7Camino.for.125849-127108.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.125849-127108.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.125849-127108.Ar_EST_120301b_c11315%7Camino.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10428%7Creverse.for.128141-129655.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.128141-129655.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.128141-129655.Ar_EST_120301b_c10428%7Creverse.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8273%7Ctpa_exp%3A.for.126388-131134.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.126388-131134.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.126388-131134.Ar_EST_120301b_c8273%7Ctpa_exp%3A.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:62 now processing 0 total clusters:62 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:62 now processing 0 total clusters:62 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:62 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:62 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:62 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:62 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 total clusters:62 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:52 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:41 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:40 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:48 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:50 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:56 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:41 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:42 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:43 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:33 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084733%7Cgb%7CEFC38422%2E1%7C.for.5543-7040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.5543-7040.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.5543-7040.gi%7C284084733%7Cgb%7CEFC38422%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085167%7Cgb%7CEFC38853%2E1%7C.for.8727-11341.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.8727-11341.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.8727-11341.gi%7C284085167%7Cgb%7CEFC38853%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096132%7Cgb%7CEFC49761%2E1%7C.for.26597-28720.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.26597-28720.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.26597-28720.gi%7C284096132%7Cgb%7CEFC49761%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083629%7Cgb%7CEFC37330%2E1%7C.for.28923-30631.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.28923-30631.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.28923-30631.gi%7C284083629%7Cgb%7CEFC37330%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082445%7Cgb%7CEFC36163%2E1%7C.for.34189-35447.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34189-35447.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34189-35447.gi%7C284082445%7Cgb%7CEFC36163%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087192%7Cgb%7CEFC40863%2E1%7C.for.33683-35435.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33683-35435.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33683-35435.gi%7C284087192%7Cgb%7CEFC40863%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097165%7Cgb%7CEFC50792%2E1%7C.for.33656-35504.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33656-35504.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33656-35504.gi%7C284097165%7Cgb%7CEFC50792%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089173%7Cgb%7CEFC42832%2E1%7C.for.33683-35435.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33683-35435.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33683-35435.gi%7C284089173%7Cgb%7CEFC42832%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081068%7Cgb%7CEFC35282%2E1%7C.for.33665-35102.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33665-35102.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33665-35102.gi%7C284081068%7Cgb%7CEFC35282%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.for.34123-35147.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34123-35147.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34123-35147.gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092309%7Cgb%7CEFC45952%2E1%7C.for.34099-35018.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34099-35018.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34099-35018.gi%7C284092309%7Cgb%7CEFC45952%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094136%7Cgb%7CEFC47771%2E1%7C.for.33572-35501.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33572-35501.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33572-35501.gi%7C284094136%7Cgb%7CEFC47771%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090349%7Cgb%7CEFC44001%2E1%7C.for.33662-35564.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33662-35564.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33662-35564.gi%7C284090349%7Cgb%7CEFC44001%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082443%7Cgb%7CEFC36161%2E1%7C.for.33668-34943.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33668-34943.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33668-34943.gi%7C284082443%7Cgb%7CEFC36161%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085688%7Cgb%7CEFC39370%2E1%7C.for.33617-35537.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33617-35537.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33617-35537.gi%7C284085688%7Cgb%7CEFC39370%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092790%7Cgb%7CEFC46430%2E1%7C.for.33680-35447.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33680-35447.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33680-35447.gi%7C284092790%7Cgb%7CEFC46430%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081402%7Cgb%7CEFC35430%2E1%7C.for.34147-35168.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34147-35168.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34147-35168.gi%7C284081402%7Cgb%7CEFC35430%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083991%7Cgb%7CEFC37688%2E1%7C.for.33563-35435.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33563-35435.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33563-35435.gi%7C284083991%7Cgb%7CEFC37688%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089853%7Cgb%7CEFC43508%2E1%7C.for.33907-35474.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33907-35474.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33907-35474.gi%7C284089853%7Cgb%7CEFC43508%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086220%7Cgb%7CEFC39898%2E1%7C.for.33895-35555.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33895-35555.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33895-35555.gi%7C284086220%7Cgb%7CEFC39898%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089128%7Cgb%7CEFC42787%2E1%7C.for.33871-35477.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33871-35477.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33871-35477.gi%7C284089128%7Cgb%7CEFC42787%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087921%7Cgb%7CEFC41587%2E1%7C.for.34528-35552.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34528-35552.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34528-35552.gi%7C284087921%7Cgb%7CEFC41587%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089145%7Cgb%7CEFC42804%2E1%7C.for.33632-35552.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33632-35552.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33632-35552.gi%7C284089145%7Cgb%7CEFC42804%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087906%7Cgb%7CEFC41573%2E1%7C.for.35089-37517.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.35089-37517.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.35089-37517.gi%7C284087906%7Cgb%7CEFC41573%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086843%7Cgb%7CEFC40517%2E1%7C.for.37402-40913.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.37402-40913.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.37402-40913.gi%7C284086843%7Cgb%7CEFC40517%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093100%7Cgb%7CEFC46739%2E1%7C.for.43418-45108.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.43418-45108.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.43418-45108.gi%7C284093100%7Cgb%7CEFC46739%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091410%7Cgb%7CEFC45057%2E1%7C.for.55767-57924.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.55767-57924.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.55767-57924.gi%7C284091410%7Cgb%7CEFC45057%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091249%7Cgb%7CEFC44897%2E1%7C.for.57245-58185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.57245-58185.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.57245-58185.gi%7C284091249%7Cgb%7CEFC44897%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096886%7Cgb%7CEFC50513%2E1%7C.for.58107-59550.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.58107-59550.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.58107-59550.gi%7C284096886%7Cgb%7CEFC50513%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094945%7Cgb%7CEFC48577%2E1%7C.for.62731-65120.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.62731-65120.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.62731-65120.gi%7C284094945%7Cgb%7CEFC48577%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090158%7Cgb%7CEFC43811%2E1%7C.for.64423-65709.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.64423-65709.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.64423-65709.gi%7C284090158%7Cgb%7CEFC43811%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083325%7Cgb%7CEFC37029%2E1%7C.for.72541-73910.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.72541-73910.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.72541-73910.gi%7C284083325%7Cgb%7CEFC37029%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091054%7Cgb%7CEFC44703%2E1%7C.for.77122-78884.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.77122-78884.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.77122-78884.gi%7C284091054%7Cgb%7CEFC44703%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086426%7Cgb%7CEFC40103%2E1%7C.for.89261-91623.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.89261-91623.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.89261-91623.gi%7C284086426%7Cgb%7CEFC40103%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087562%7Cgb%7CEFC41231%2E1%7C.for.91129-92600.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.91129-92600.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.91129-92600.gi%7C284087562%7Cgb%7CEFC41231%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088507%7Cgb%7CEFC42170%2E1%7C.for.96585-98264.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.96585-98264.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.96585-98264.gi%7C284088507%7Cgb%7CEFC42170%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090894%7Cgb%7CEFC44543%2E1%7C.for.98815-100028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.98815-100028.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.98815-100028.gi%7C284090894%7Cgb%7CEFC44543%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094387%7Cgb%7CEFC48021%2E1%7C.for.101777-103319.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.101777-103319.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.101777-103319.gi%7C284094387%7Cgb%7CEFC48021%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087483%7Cgb%7CEFC41152%2E1%7C.for.109338-110853.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.109338-110853.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.109338-110853.gi%7C284087483%7Cgb%7CEFC41152%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085542%7Cgb%7CEFC39225%2E1%7C.for.109010-110669.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.109010-110669.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.109010-110669.gi%7C284085542%7Cgb%7CEFC39225%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091466%7Cgb%7CEFC45112%2E1%7C.for.114033-115033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.114033-115033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.114033-115033.gi%7C284091466%7Cgb%7CEFC45112%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092518%7Cgb%7CEFC46160%2E1%7C.for.113626-115033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.113626-115033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.113626-115033.gi%7C284092518%7Cgb%7CEFC46160%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092387%7Cgb%7CEFC46029%2E1%7C.for.113569-115033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.113569-115033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.113569-115033.gi%7C284092387%7Cgb%7CEFC46029%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091231%7Cgb%7CEFC44879%2E1%7C.for.113626-115033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.113626-115033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.113626-115033.gi%7C284091231%7Cgb%7CEFC44879%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096309%7Cgb%7CEFC49937%2E1%7C.for.114033-115033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.114033-115033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.114033-115033.gi%7C284096309%7Cgb%7CEFC49937%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090160%7Cgb%7CEFC43813%2E1%7C.for.117468-119525.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117468-119525.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117468-119525.gi%7C284090160%7Cgb%7CEFC43813%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090298%7Cgb%7CEFC43950%2E1%7C.for.120511-122054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120511-122054.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120511-122054.gi%7C284090298%7Cgb%7CEFC43950%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081791%7Cgb%7CEFC35658%2E1%7C.for.120520-121706.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120520-121706.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120520-121706.gi%7C284081791%7Cgb%7CEFC35658%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096459%7Cgb%7CEFC50087%2E1%7C.for.120511-122392.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120511-122392.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120511-122392.gi%7C284096459%7Cgb%7CEFC50087%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093690%7Cgb%7CEFC47327%2E1%7C.for.121060-122404.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.121060-122404.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.121060-122404.gi%7C284093690%7Cgb%7CEFC47327%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095073%7Cgb%7CEFC48705%2E1%7C.for.120520-122392.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120520-122392.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120520-122392.gi%7C284095073%7Cgb%7CEFC48705%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083745%7Cgb%7CEFC37445%2E1%7C.for.120511-122051.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120511-122051.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120511-122051.gi%7C284083745%7Cgb%7CEFC37445%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 16 ...processing 1 of 16 ...processing 2 of 16 ...processing 3 of 16 ...processing 4 of 16 ...processing 5 of 16 ...processing 6 of 16 ...processing 7 of 16 ...processing 8 of 16 ...processing 9 of 16 ...processing 10 of 16 ...processing 11 of 16 ...processing 12 of 16 ...processing 13 of 16 ...processing 14 of 16 ...processing 15 of 16 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 total clusters:20 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 ...processing 0 of 14 ...processing 1 of 14 ...processing 2 of 14 ...processing 3 of 14 ...processing 4 of 14 ...processing 5 of 14 ...processing 6 of 14 ...processing 7 of 14 ...processing 8 of 14 ...processing 9 of 14 ...processing 10 of 14 ...processing 11 of 14 ...processing 12 of 14 ...processing 13 of 14 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:30 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:30 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 total clusters:30 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:30 now processing 0 total clusters:30 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.690-1692.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.690-1692.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.690-1692.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.4266-6856.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.4266-6856.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.4266-6856.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.8812-11160.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.8812-11160.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.8812-11160.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.26729-29502.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.26729-29502.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.26729-29502.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.31019-31967.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.31019-31967.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.31019-31967.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.33669-35588.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.33669-35588.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.33669-35588.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.37601-40713.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.37601-40713.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.37601-40713.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.44599-46457.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.44599-46457.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.44599-46457.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.46654-48408.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.46654-48408.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.46654-48408.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.50792-52388.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.50792-52388.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.50792-52388.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.52747-54826.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.52747-54826.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.52747-54826.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.55963-57724.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.55963-57724.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.55963-57724.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.62930-65986.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.62930-65986.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.62930-65986.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.68744-69654.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.68744-69654.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.68744-69654.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.70533-71547.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.70533-71547.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.70533-71547.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.71592-72907.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.71592-72907.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.71592-72907.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.73866-75487.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.73866-75487.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.73866-75487.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.93745-94651.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.93745-94651.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.93745-94651.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.96146-99156.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.96146-99156.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.96146-99156.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.99657-100578.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.99657-100578.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.99657-100578.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.103266-105672.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.103266-105672.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.103266-105672.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.109167-111586.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.109167-111586.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.109167-111586.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.111692-112584.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.111692-112584.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.111692-112584.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.113639-115158.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.113639-115158.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.113639-115158.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.117606-119325.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.117606-119325.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.117606-119325.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.128340-130208.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.128340-130208.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.128340-130208.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.7106-8399.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.7106-8399.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.7106-8399.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.15824-20905.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.15824-20905.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.15824-20905.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.29122-30476.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.29122-30476.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.29122-30476.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.31942-33158.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.31942-33158.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.31942-33158.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.35288-37317.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.35288-37317.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.35288-37317.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.40796-41931.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.40796-41931.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.40796-41931.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.41976-43336.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.41976-43336.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.41976-43336.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.43585-44908.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.43585-44908.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.43585-44908.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.50149-51215.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.50149-51215.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.50149-51215.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.54578-55855.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.54578-55855.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.54578-55855.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.57406-58213.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.57406-58213.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.57406-58213.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.58293-59350.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.58293-59350.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.58293-59350.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.59574-61033.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.59574-61033.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.59574-61033.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.69790-70870.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.69790-70870.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.69790-70870.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/40_0.72740-73710.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/40_0.72740-73710.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/40_0.72740-73710.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/41_0.77300-79314.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/41_0.77300-79314.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/41_0.77300-79314.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/42_0.80641-84575.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/42_0.80641-84575.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/42_0.80641-84575.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/43_0.87772-92400.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/43_0.87772-92400.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/43_0.87772-92400.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/44_0.100677-103209.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/44_0.100677-103209.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/44_0.100677-103209.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/45_0.120710-122204.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/45_0.120710-122204.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/45_0.120710-122204.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/46_0.125120-126908.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/46_0.125120-126908.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/46_0.125120-126908.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C38 Length: 133197 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:10 current j:0 j_size:10 current j:1 j_size:10 current j:2 j_size:10 current j:3 j_size:10 current j:4 j_size:10 current j:5 j_size:10 current j:6 j_size:10 current j:7 j_size:10 current j:8 j_size:10 current j:9 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C38.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C38.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:3 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15228%7Crheb.for.1-1268.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.1-1268.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.1-1268.Ar_EST_120301b_c15228%7Crheb.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16286%7Cmeloidogyne.for.1526-3096.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.1526-3096.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.1526-3096.Ar_EST_120301b_c16286%7Cmeloidogyne.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8400%7Chypothetical.for.826-2788.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.826-2788.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.826-2788.Ar_EST_120301b_c8400%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16746%7Cmc1-0049t-m146-h12-.for.7019-8207.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.7019-8207.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.7019-8207.Ar_EST_120301b_c16746%7Cmc1-0049t-m146-h12-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14558%7Cdedicator.for.7705-8887.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.7705-8887.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.7705-8887.Ar_EST_120301b_c14558%7Cdedicator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15786%7Cfn885936.for.10647-11929.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.10647-11929.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.10647-11929.Ar_EST_120301b_c15786%7Cfn885936.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1214%7Cphosphate.for.12409-14139.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.12409-14139.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.12409-14139.120301b_Contig1214%7Cphosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10859%7Cphosphate.for.13552-14841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.13552-14841.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.13552-14841.Ar_EST_120301b_c10859%7Cphosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16453%7Cpre-mrna.for.14309-15975.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.14309-15975.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.14309-15975.Ar_EST_120301b_c16453%7Cpre-mrna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7753%7Ctranslation.for.16013-17972.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.16013-17972.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.16013-17972.Ar_EST_120301b_c7753%7Ctranslation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14209%7Cpredicted.for.19709-20930.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.19709-20930.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.19709-20930.Ar_EST_120301b_c14209%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18465%7Cpredicted.for.20179-21432.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.20179-21432.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.20179-21432.Ar_EST_120301b_c18465%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12710%7Cixodes.for.20982-22492.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.20982-22492.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.20982-22492.Ar_EST_120301b_c12710%7Cixodes.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16149%7Cactin.for.22395-23718.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.22395-23718.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.22395-23718.Ar_EST_120301b_c16149%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3321%7Cfy454559.for.26643-28278.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.26643-28278.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.26643-28278.Ar_EST_120301b_c3321%7Cfy454559.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1245%7Cregulator.for.28414-30245.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.28414-30245.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.28414-30245.120301b_Contig1245%7Cregulator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8350%7Cglycoside.for.30495-32566.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.30495-32566.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.30495-32566.Ar_EST_120301b_c8350%7Cglycoside.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18494%7Cdiacylglycerol.for.36778-38537.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.36778-38537.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.36778-38537.Ar_EST_120301b_c18494%7Cdiacylglycerol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5917%7Cglycosyl.for.40075-41960.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.40075-41960.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.40075-41960.Ar_EST_120301b_rep_c5917%7Cglycosyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4688%7Cglycosyl.for.39920-41840.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.39920-41840.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.39920-41840.Ar_EST_120301b_rep_c4688%7Cglycosyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8876%7Cprotein.for.42940-44630.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.42940-44630.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.42940-44630.Ar_EST_120301b_c8876%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12607%7Ccarboxypeptidase.for.44948-46147.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.44948-46147.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.44948-46147.Ar_EST_120301b_c12607%7Ccarboxypeptidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15694%7Cfy863259.for.47931-49182.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.47931-49182.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.47931-49182.Ar_EST_120301b_c15694%7Cfy863259.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6729%7Chypothetical.for.48968-50536.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.48968-50536.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.48968-50536.Ar_EST_120301b_rep_c6729%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6105%7Cmusra09tf.for.49359-50604.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.49359-50604.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.49359-50604.Ar_EST_120301b_rep_c6105%7Cmusra09tf.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig360%7Cendonuclease.for.48954-50714.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.48954-50714.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.48954-50714.120301b_Contig360%7Cendonuclease.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1875%7Cregulator.for.50892-52717.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.50892-52717.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.50892-52717.Ar_EST_120301b_c1875%7Cregulator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8971%7Cgpi-anchored.for.52653-54255.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.52653-54255.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.52653-54255.Ar_EST_120301b_c8971%7Cgpi-anchored.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1204%7Cantigenic.for.54431-55800.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.54431-55800.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.54431-55800.120301b_Contig1204%7Cantigenic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2993%7Cala-interacting.for.55690-57429.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.55690-57429.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.55690-57429.Ar_EST_120301b_c2993%7Cala-interacting.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17158%7CCCFBM4D02.for.57563-58850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.57563-58850.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.57563-58850.Ar_EST_120301b_c17158%7CCCFBM4D02.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3003%7Cserine.for.61670-63495.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.61670-63495.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.61670-63495.Ar_EST_120301b_c3003%7Cserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8793%7Ckinase.for.62456-63890.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.62456-63890.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.62456-63890.Ar_EST_120301b_c8793%7Ckinase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c181%7Cmannose-p-dolichol.for.70397-71993.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.70397-71993.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.70397-71993.Ar_EST_120301b_c181%7Cmannose-p-dolichol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17865%7Cmannose-p-dolichol.for.70718-71966.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.70718-71966.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.70718-71966.Ar_EST_120301b_c17865%7Cmannose-p-dolichol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1474%7Cregulator.for.77795-79191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.77795-79191.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.77795-79191.Ar_EST_120301b_c1474%7Cregulator.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16328%7Cphytanoyl-.for.80693-82050.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.80693-82050.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.80693-82050.Ar_EST_120301b_c16328%7Cphytanoyl-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14940%7C---NA---.for.93035-94410.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.93035-94410.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.93035-94410.Ar_EST_120301b_c14940%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3508%7Crhogef.for.91581-93280.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.91581-93280.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.91581-93280.Ar_EST_120301b_c3508%7Crhogef.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1078%7Cpleckstrin.for.91910-94036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.91910-94036.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.91910-94036.Ar_EST_120301b_c1078%7Cpleckstrin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12304%7Ccls_c.for.93028-94066.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.93028-94066.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.93028-94066.Ar_EST_120301b_c12304%7Ccls_c.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13759%7Cfoaa-.for.104296-105162.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.104296-105162.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.104296-105162.Ar_EST_120301b_c13759%7Cfoaa-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9555%7Cubiquitin.for.104630-106307.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.104630-106307.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.104630-106307.Ar_EST_120301b_c9555%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19079%7Cubiquitin.for.107333-108411.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.107333-108411.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.107333-108411.Ar_EST_120301b_c19079%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8071%7Cubiquitin.for.106552-108586.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.106552-108586.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.106552-108586.Ar_EST_120301b_c8071%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9823%7CCF0007142.for.116219-117319.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.116219-117319.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.116219-117319.Ar_EST_120301b_c9823%7CCF0007142.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17572%7C---NA---.for.117192-118387.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.117192-118387.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.117192-118387.Ar_EST_120301b_c17572%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20039%7C60s.for.118952-120109.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120109.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120109.Ar_EST_120301b_rep_c20039%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9805%7C0246832.for.119506-120448.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119506-120448.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119506-120448.Ar_EST_120301b_rep_c9805%7C0246832.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11483%7Cisoform.for.119403-120493.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119403-120493.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119403-120493.Ar_EST_120301b_rep_c11483%7Cisoform.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5984%7Cribosomal.for.118952-120346.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120346.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120346.Ar_EST_120301b_rep_c5984%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5385%7Cribosomal.for.118966-120352.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118966-120352.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118966-120352.Ar_EST_120301b_rep_c5385%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20112%7C60s.for.119424-120420.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119424-120420.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119424-120420.Ar_EST_120301b_rep_c20112%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1975%7Cribosomal.for.118868-120525.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118868-120525.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118868-120525.Ar_EST_120301b_c1975%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20290%7Cribosomal.for.118952-120343.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120343.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120343.Ar_EST_120301b_rep_c20290%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20093%7C60s.for.118952-120295.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120295.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120295.Ar_EST_120301b_rep_c20093%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5245%7Cribosomal.for.118952-120380.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120380.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120380.Ar_EST_120301b_rep_c5245%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19529%7Cppe00006243.for.119535-120422.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119535-120422.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119535-120422.Ar_EST_120301b_rep_c19529%7Cppe00006243.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig972%7Ctetratricopeptide.for.119793-121397.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119793-121397.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119793-121397.120301b_Contig972%7Ctetratricopeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15821%7Chypothetical.for.125074-126487.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.125074-126487.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.125074-126487.Ar_EST_120301b_c15821%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7993%7Chypothetical.for.128465-130544.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.128465-130544.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.128465-130544.Ar_EST_120301b_c7993%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6167%7Crho.for.130038-131215.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.130038-131215.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.130038-131215.Ar_EST_120301b_rep_c6167%7Crho.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4353%7Cras-related.for.129829-131313.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.129829-131313.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.129829-131313.Ar_EST_120301b_rep_c4353%7Cras-related.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:41 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:41 now processing 0 total clusters:41 now processing 0 total clusters:41 now processing 0 ...processing 0 of 2 ...processing 1 of 2 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:37 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:23 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:36 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:52 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:42 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:45 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:32 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:43 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:44 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:26 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095853%7Cgb%7CEFC49482%2E1%7C.for.12016-13166.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.12016-13166.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.12016-13166.gi%7C284095853%7Cgb%7CEFC49482%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087172%7Cgb%7CEFC40843%2E1%7C.for.16022-17814.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.16022-17814.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.16022-17814.gi%7C284087172%7Cgb%7CEFC40843%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095198%7Cgb%7CEFC48829%2E1%7C.for.30355-32672.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.30355-32672.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.30355-32672.gi%7C284095198%7Cgb%7CEFC48829%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096098%7Cgb%7CEFC49727%2E1%7C.for.44261-46268.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.44261-46268.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.44261-46268.gi%7C284096098%7Cgb%7CEFC49727%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094374%7Cgb%7CEFC48008%2E1%7C.for.55695-57505.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.55695-57505.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.55695-57505.gi%7C284094374%7Cgb%7CEFC48008%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082829%7Cgb%7CEFC36540%2E1%7C.for.59265-61230.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.59265-61230.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.59265-61230.gi%7C284082829%7Cgb%7CEFC36540%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095559%7Cgb%7CEFC49189%2E1%7C.for.59268-60843.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.59268-60843.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.59268-60843.gi%7C284095559%7Cgb%7CEFC49189%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096101%7Cgb%7CEFC49730%2E1%7C.for.67324-68455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.67324-68455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.67324-68455.gi%7C284096101%7Cgb%7CEFC49730%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090298%7Cgb%7CEFC43950%2E1%7C.for.69162-70660.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69162-70660.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69162-70660.gi%7C284090298%7Cgb%7CEFC43950%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096572%7Cgb%7CEFC50200%2E1%7C.for.69582-70540.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69582-70540.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69582-70540.gi%7C284096572%7Cgb%7CEFC50200%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084962%7Cgb%7CEFC38649%2E1%7C.for.69174-70630.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69174-70630.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69174-70630.gi%7C284084962%7Cgb%7CEFC38649%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081791%7Cgb%7CEFC35658%2E1%7C.for.69162-70354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69162-70354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69162-70354.gi%7C284081791%7Cgb%7CEFC35658%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096459%7Cgb%7CEFC50087%2E1%7C.for.69168-70963.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69168-70963.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69168-70963.gi%7C284096459%7Cgb%7CEFC50087%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093690%7Cgb%7CEFC47327%2E1%7C.for.69654-70660.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69654-70660.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69654-70660.gi%7C284093690%7Cgb%7CEFC47327%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095073%7Cgb%7CEFC48705%2E1%7C.for.69159-70960.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69159-70960.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69159-70960.gi%7C284095073%7Cgb%7CEFC48705%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083745%7Cgb%7CEFC37445%2E1%7C.for.69168-70654.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69168-70654.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69168-70654.gi%7C284083745%7Cgb%7CEFC37445%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097133%7Cgb%7CEFC50760%2E1%7C.for.70362-71972.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.70362-71972.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.70362-71972.gi%7C284097133%7Cgb%7CEFC50760%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095573%7Cgb%7CEFC49203%2E1%7C.for.75345-76793.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75345-76793.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75345-76793.gi%7C284095573%7Cgb%7CEFC49203%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085812%7Cgb%7CEFC39493%2E1%7C.for.75339-76796.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76796.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76796.gi%7C284085812%7Cgb%7CEFC39493%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092862%7Cgb%7CEFC46502%2E1%7C.for.75402-76799.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75402-76799.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75402-76799.gi%7C284092862%7Cgb%7CEFC46502%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090460%7Cgb%7CEFC44112%2E1%7C.for.75339-76805.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76805.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76805.gi%7C284090460%7Cgb%7CEFC44112%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089636%7Cgb%7CEFC43292%2E1%7C.for.75405-76805.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75405-76805.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75405-76805.gi%7C284089636%7Cgb%7CEFC43292%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090872%7Cgb%7CEFC44522%2E1%7C.for.75342-76799.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75342-76799.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75342-76799.gi%7C284090872%7Cgb%7CEFC44522%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081627%7Cgb%7CEFC35562%2E1%7C.for.75684-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75684-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75684-76808.gi%7C284081627%7Cgb%7CEFC35562%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093011%7Cgb%7CEFC46651%2E1%7C.for.75405-76805.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75405-76805.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75405-76805.gi%7C284093011%7Cgb%7CEFC46651%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091565%7Cgb%7CEFC45211%2E1%7C.for.75429-76796.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75429-76796.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75429-76796.gi%7C284091565%7Cgb%7CEFC45211%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085749%7Cgb%7CEFC39431%2E1%7C.for.75537-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75537-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75537-76808.gi%7C284085749%7Cgb%7CEFC39431%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090598%7Cgb%7CEFC44249%2E1%7C.for.75339-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76808.gi%7C284090598%7Cgb%7CEFC44249%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095689%7Cgb%7CEFC49319%2E1%7C.for.75414-76817.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75414-76817.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75414-76817.gi%7C284095689%7Cgb%7CEFC49319%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088013%7Cgb%7CEFC41679%2E1%7C.for.75339-76799.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76799.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76799.gi%7C284088013%7Cgb%7CEFC41679%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092337%7Cgb%7CEFC45979%2E1%7C.for.75402-76799.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75402-76799.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75402-76799.gi%7C284092337%7Cgb%7CEFC45979%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093381%7Cgb%7CEFC47019%2E1%7C.for.75408-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75408-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75408-76808.gi%7C284093381%7Cgb%7CEFC47019%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087750%7Cgb%7CEFC41418%2E1%7C.for.75339-76796.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76796.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76796.gi%7C284087750%7Cgb%7CEFC41418%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097171%7Cgb%7CEFC50798%2E1%7C.for.75360-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75360-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75360-76808.gi%7C284097171%7Cgb%7CEFC50798%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084253%7Cgb%7CEFC37948%2E1%7C.for.75390-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75390-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75390-76808.gi%7C284084253%7Cgb%7CEFC37948%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096980%7Cgb%7CEFC50607%2E1%7C.for.75396-76726.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75396-76726.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75396-76726.gi%7C284096980%7Cgb%7CEFC50607%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082060%7Cgb%7CEFC35846%2E1%7C.for.75588-76805.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75588-76805.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75588-76805.gi%7C284082060%7Cgb%7CEFC35846%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089921%7Cgb%7CEFC43576%2E1%7C.for.75366-76534.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75366-76534.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75366-76534.gi%7C284089921%7Cgb%7CEFC43576%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087888%7Cgb%7CEFC41555%2E1%7C.for.75339-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76808.gi%7C284087888%7Cgb%7CEFC41555%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090604%7Cgb%7CEFC44255%2E1%7C.for.75381-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75381-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75381-76808.gi%7C284090604%7Cgb%7CEFC44255%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093718%7Cgb%7CEFC47355%2E1%7C.for.75402-76802.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75402-76802.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75402-76802.gi%7C284093718%7Cgb%7CEFC47355%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081289%7Cgb%7CEFC35375%2E1%7C.for.75366-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75366-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75366-76808.gi%7C284081289%7Cgb%7CEFC35375%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084867%7Cgb%7CEFC38555%2E1%7C.for.75381-76805.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75381-76805.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75381-76805.gi%7C284084867%7Cgb%7CEFC38555%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092603%7Cgb%7CEFC46244%2E1%7C.for.75390-76805.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75390-76805.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75390-76805.gi%7C284092603%7Cgb%7CEFC46244%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094751%7Cgb%7CEFC48384%2E1%7C.for.75345-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75345-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75345-76808.gi%7C284094751%7Cgb%7CEFC48384%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.82526-86036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86036.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86036.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.for.83467-86042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83467-86042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83467-86042.gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095844%7Cgb%7CEFC49473%2E1%7C.for.82526-86051.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86051.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86051.gi%7C284095844%7Cgb%7CEFC49473%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.for.82478-86054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82478-86054.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82478-86054.gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.for.82526-86054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86054.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86054.gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.for.83596-86024.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83596-86024.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83596-86024.gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085992%7Cgb%7CEFC39672%2E1%7C.for.82526-86078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86078.gi%7C284085992%7Cgb%7CEFC39672%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095843%7Cgb%7CEFC49472%2E1%7C.for.83551-86042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83551-86042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83551-86042.gi%7C284095843%7Cgb%7CEFC49472%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.for.83554-86039.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86039.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86039.gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.for.83617-86012.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83617-86012.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83617-86012.gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085851%7Cgb%7CEFC39532%2E1%7C.for.83590-87575.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-87575.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-87575.gi%7C284085851%7Cgb%7CEFC39532%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088147%7Cgb%7CEFC41812%2E1%7C.for.83623-86063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86063.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86063.gi%7C284088147%7Cgb%7CEFC41812%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.for.83623-85985.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-85985.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-85985.gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.for.83554-86027.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86027.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86027.gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.for.82526-87245.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-87245.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-87245.gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084257%7Cgb%7CEFC37951%2E1%7C.for.82526-86387.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86387.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86387.gi%7C284084257%7Cgb%7CEFC37951%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.for.82526-86054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86054.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86054.gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090138%7Cgb%7CEFC43791%2E1%7C.for.82478-86126.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82478-86126.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82478-86126.gi%7C284090138%7Cgb%7CEFC43791%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.for.83596-86042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83596-86042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83596-86042.gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.for.83551-86036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83551-86036.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83551-86036.gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.for.83551-87245.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83551-87245.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83551-87245.gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082687%7Cgb%7CEFC36400%2E1%7C.for.82517-86612.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82517-86612.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82517-86612.gi%7C284082687%7Cgb%7CEFC36400%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086383%7Cgb%7CEFC40060%2E1%7C.for.83623-86051.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86051.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86051.gi%7C284086383%7Cgb%7CEFC40060%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.for.83566-86015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83566-86015.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83566-86015.gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097003%7Cgb%7CEFC50630%2E1%7C.for.83554-86042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86042.gi%7C284097003%7Cgb%7CEFC50630%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.for.83554-86039.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86039.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86039.gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.for.83590-86015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-86015.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-86015.gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.for.82517-86054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82517-86054.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82517-86054.gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082747%7Cgb%7CEFC36459%2E1%7C.for.83590-86033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-86033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-86033.gi%7C284082747%7Cgb%7CEFC36459%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.for.82526-87245.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-87245.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-87245.gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.for.82523-86054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82523-86054.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82523-86054.gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092908%7Cgb%7CEFC46548%2E1%7C.for.82526-86030.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86030.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86030.gi%7C284092908%7Cgb%7CEFC46548%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.for.82478-86039.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82478-86039.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82478-86039.gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.for.82526-86042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86042.gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.for.82526-86060.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86060.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86060.gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094023%7Cgb%7CEFC47658%2E1%7C.for.82514-86093.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82514-86093.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82514-86093.gi%7C284094023%7Cgb%7CEFC47658%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082395%7Cgb%7CEFC36118%2E1%7C.for.82523-86060.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82523-86060.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82523-86060.gi%7C284082395%7Cgb%7CEFC36118%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096530%7Cgb%7CEFC50158%2E1%7C.for.83623-86396.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86396.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86396.gi%7C284096530%7Cgb%7CEFC50158%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.for.83623-86042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86042.gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.for.83659-86015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83659-86015.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83659-86015.gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090154%7Cgb%7CEFC43807%2E1%7C.for.82526-86081.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86081.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86081.gi%7C284090154%7Cgb%7CEFC43807%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083343%7Cgb%7CEFC37047%2E1%7C.for.82517-86024.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82517-86024.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82517-86024.gi%7C284083343%7Cgb%7CEFC37047%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086531%7Cgb%7CEFC40207%2E1%7C.for.83572-86042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83572-86042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83572-86042.gi%7C284086531%7Cgb%7CEFC40207%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.for.83554-86018.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86018.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86018.gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090243%7Cgb%7CEFC43896%2E1%7C.for.82526-86042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86042.gi%7C284090243%7Cgb%7CEFC43896%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.for.82526-86492.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86492.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86492.gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.for.82517-87083.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82517-87083.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82517-87083.gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092203%7Cgb%7CEFC45846%2E1%7C.for.82526-86054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86054.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86054.gi%7C284092203%7Cgb%7CEFC45846%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.for.83593-86075.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83593-86075.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83593-86075.gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.for.83596-86102.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83596-86102.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83596-86102.gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088463%7Cgb%7CEFC42126%2E1%7C.for.83623-86024.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86024.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86024.gi%7C284088463%7Cgb%7CEFC42126%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086579%7Cgb%7CEFC40255%2E1%7C.for.83554-86042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86042.gi%7C284086579%7Cgb%7CEFC40255%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096176%7Cgb%7CEFC49805%2E1%7C.for.82526-86360.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86360.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86360.gi%7C284096176%7Cgb%7CEFC49805%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.for.83590-86036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-86036.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-86036.gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080837%7Cgb%7CEFC35205%2E1%7C.for.83641-86126.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83641-86126.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83641-86126.gi%7C284080837%7Cgb%7CEFC35205%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087676%7Cgb%7CEFC41344%2E1%7C.for.82523-86432.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82523-86432.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82523-86432.gi%7C284087676%7Cgb%7CEFC41344%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087857%7Cgb%7CEFC41524%2E1%7C.for.82526-86021.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86021.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86021.gi%7C284087857%7Cgb%7CEFC41524%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080808%7Cgb%7CEFC35194%2E1%7C.for.83599-86012.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83599-86012.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83599-86012.gi%7C284080808%7Cgb%7CEFC35194%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.for.83590-85994.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-85994.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-85994.gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095310%7Cgb%7CEFC48941%2E1%7C.for.101030-102665.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.101030-102665.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.101030-102665.gi%7C284095310%7Cgb%7CEFC48941%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084277%7Cgb%7CEFC37971%2E1%7C.for.104855-109073.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.104855-109073.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.104855-109073.gi%7C284084277%7Cgb%7CEFC37971%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.for.109610-110919.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109610-110919.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109610-110919.gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.for.109649-110919.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109649-110919.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109649-110919.gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094669%7Cgb%7CEFC48302%2E1%7C.for.109652-110919.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109652-110919.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109652-110919.gi%7C284094669%7Cgb%7CEFC48302%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.for.109634-110913.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109634-110913.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109634-110913.gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.for.109628-110919.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109628-110919.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109628-110919.gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.for.109610-111339.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109610-111339.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109610-111339.gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.for.109616-110967.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109616-110967.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109616-110967.gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.for.109619-111045.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109619-111045.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109619-111045.gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097002%7Cgb%7CEFC50629%2E1%7C.for.109652-110967.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109652-110967.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109652-110967.gi%7C284097002%7Cgb%7CEFC50629%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.for.109637-110937.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109637-110937.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109637-110937.gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.for.109331-110925.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109331-110925.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109331-110925.gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092908%7Cgb%7CEFC46548%2E1%7C.for.109604-111387.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109604-111387.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109604-111387.gi%7C284092908%7Cgb%7CEFC46548%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.for.109616-110988.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109616-110988.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109616-110988.gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.for.109958-110916.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109958-110916.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109958-110916.gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.for.109610-110916.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109610-110916.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109610-110916.gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.for.109541-110931.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109541-110931.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109541-110931.gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.for.109619-114930.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109619-114930.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109619-114930.gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088433%7Cgb%7CEFC42096%2E1%7C.for.109649-111183.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109649-111183.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109649-111183.gi%7C284088433%7Cgb%7CEFC42096%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096508%7Cgb%7CEFC50136%2E1%7C.for.109643-114861.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109643-114861.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109643-114861.gi%7C284096508%7Cgb%7CEFC50136%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086579%7Cgb%7CEFC40255%2E1%7C.for.109637-114897.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109637-114897.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109637-114897.gi%7C284086579%7Cgb%7CEFC40255%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085441%7Cgb%7CEFC39125%2E1%7C.for.119173-120386.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119173-120386.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119173-120386.gi%7C284085441%7Cgb%7CEFC39125%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090460%7Cgb%7CEFC44112%2E1%7C.for.129852-131111.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.129852-131111.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.129852-131111.gi%7C284090460%7Cgb%7CEFC44112%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091118%7Cgb%7CEFC44766%2E1%7C.for.129888-130990.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.129888-130990.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.129888-130990.gi%7C284091118%7Cgb%7CEFC44766%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 25 ...processing 1 of 25 ...processing 2 of 25 ...processing 3 of 25 ...processing 4 of 25 ...processing 5 of 25 ...processing 6 of 25 ...processing 7 of 25 ...processing 8 of 25 ...processing 9 of 25 ...processing 10 of 25 ...processing 11 of 25 ...processing 12 of 25 ...processing 13 of 25 ...processing 14 of 25 ...processing 15 of 25 ...processing 16 of 25 ...processing 17 of 25 ...processing 18 of 25 ...processing 19 of 25 ...processing 20 of 25 ...processing 21 of 25 ...processing 22 of 25 ...processing 23 of 25 ...processing 24 of 25 total clusters:14 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 21 ...processing 1 of 21 ...processing 2 of 21 ...processing 3 of 21 ...processing 4 of 21 ...processing 5 of 21 ...processing 6 of 21 ...processing 7 of 21 ...processing 8 of 21 ...processing 9 of 21 ...processing 10 of 21 ...processing 11 of 21 ...processing 12 of 21 ...processing 13 of 21 ...processing 14 of 21 ...processing 15 of 21 ...processing 16 of 21 ...processing 17 of 21 ...processing 18 of 21 ...processing 19 of 21 ...processing 20 of 21 ...trimming the rest total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 22 ...processing 1 of 22 ...processing 2 of 22 ...processing 3 of 22 ...processing 4 of 22 ...processing 5 of 22 ...processing 6 of 22 ...processing 7 of 22 ...processing 8 of 22 ...processing 9 of 22 ...processing 10 of 22 ...processing 11 of 22 ...processing 12 of 22 ...processing 13 of 22 ...processing 14 of 22 ...processing 15 of 22 ...processing 16 of 22 ...processing 17 of 22 ...processing 18 of 22 ...processing 19 of 22 ...processing 20 of 22 ...processing 21 of 22 total clusters:12 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 20 ...processing 1 of 20 ...processing 2 of 20 ...processing 3 of 20 ...processing 4 of 20 ...processing 5 of 20 ...processing 6 of 20 ...processing 7 of 20 ...processing 8 of 20 ...processing 9 of 20 ...processing 10 of 20 ...processing 11 of 20 ...processing 12 of 20 ...processing 13 of 20 ...processing 14 of 20 ...processing 15 of 20 ...processing 16 of 20 ...processing 17 of 20 ...processing 18 of 20 ...processing 19 of 20 ...trimming the rest ...processing 0 of 10 ...processing 1 of 10 ...processing 2 of 10 ...processing 3 of 10 ...processing 4 of 10 ...processing 5 of 10 ...processing 6 of 10 ...processing 7 of 10 ...processing 8 of 10 ...processing 9 of 10 total clusters:23 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.0-1068.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.0-1068.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.0-1068.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.14508-15775.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.14508-15775.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.14508-15775.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.26842-28089.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.26842-28089.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.26842-28089.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.30554-32472.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.30554-32472.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.30554-32472.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.36905-38337.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.36905-38337.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.36905-38337.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.40119-41760.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.40119-41760.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.40119-41760.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.49167-50404.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.49167-50404.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.49167-50404.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.51091-52517.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.51091-52517.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.51091-52517.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.52826-55600.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.52826-55600.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.52826-55600.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.61869-63690.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.61869-63690.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.61869-63690.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.77994-78991.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.77994-78991.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.77994-78991.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.80892-81850.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.80892-81850.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.80892-81850.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.82716-86883.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.82716-86883.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.82716-86883.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.91757-94210.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.91757-94210.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.91757-94210.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.101229-102851.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.101229-102851.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.101229-102851.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.104829-108873.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.104829-108873.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.104829-108873.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.109809-114661.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.109809-114661.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.109809-114661.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.116418-117119.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.116418-117119.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.116418-117119.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.119146-121197.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.119146-121197.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.119146-121197.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.125273-126287.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.125273-126287.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.125273-126287.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.1025-2898.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.1025-2898.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.1025-2898.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.7134-8687.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.7134-8687.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.7134-8687.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.10846-11729.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.10846-11729.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.10846-11729.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.12608-14641.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.12608-14641.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.12608-14641.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.16212-17785.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.16212-17785.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.16212-17785.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.19908-23518.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.19908-23518.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.19908-23518.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.28613-30052.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.28613-30052.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.28613-30052.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.43139-44430.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.43139-44430.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.43139-44430.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.44460-46068.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.44460-46068.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.44460-46068.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.55889-57367.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.55889-57367.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.55889-57367.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.57762-58650.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.57762-58650.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.57762-58650.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.67523-68255.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.67523-68255.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.67523-68255.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.69358-71793.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.69358-71793.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.69358-71793.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.75544-76608.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.75544-76608.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.75544-76608.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.117391-118195.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.117391-118195.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.117391-118195.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.128664-131113.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.128664-131113.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.128664-131113.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C39 Length: 100272 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:4 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:1 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:3 current j:0 j_size:3 current j:1 j_size:3 current j:2 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C39.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C39.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:13 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13753%7Czinc.for.1-924.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.1-924.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.1-924.Ar_EST_120301b_c13753%7Czinc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19066%7Chypothetical.for.789-2082.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.789-2082.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.789-2082.Ar_EST_120301b_c19066%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig218%7Cnexus.for.334-2773.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.334-2773.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.334-2773.120301b_Contig218%7Cnexus.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14313%7C---NA---.for.2604-4481.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.2604-4481.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.2604-4481.Ar_EST_120301b_c14313%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19310%7C1351925.for.2914-4175.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.2914-4175.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.2914-4175.Ar_EST_120301b_c19310%7C1351925.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12834%7C1351925.for.2793-4091.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.2793-4091.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.2793-4091.Ar_EST_120301b_c12834%7C1351925.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16703%7C454.for.2095-3484.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.2095-3484.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.2095-3484.Ar_EST_120301b_c16703%7C454.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18347%7Cribosomal.for.5241-6295.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.5241-6295.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.5241-6295.Ar_EST_120301b_rep_c18347%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12088%7Cnucleosome.for.4895-6049.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.4895-6049.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.4895-6049.Ar_EST_120301b_rep_c12088%7Cnucleosome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18245%7Ceukaryotic.for.4895-5920.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.4895-5920.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.4895-5920.Ar_EST_120301b_rep_c18245%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3465%7Cexonuclease.for.6573-8065.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.6573-8065.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.6573-8065.Ar_EST_120301b_c3465%7Cexonuclease.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4109%7Cactin.for.8275-9534.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8275-9534.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8275-9534.Ar_EST_120301b_rep_c4109%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5621%7Cactin.for.8469-9548.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8469-9548.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8469-9548.Ar_EST_120301b_rep_c5621%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19797%7Cactin.for.8462-9544.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8462-9544.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8462-9544.Ar_EST_120301b_rep_c19797%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6543%7Cactin.for.8276-9534.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8276-9534.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8276-9534.Ar_EST_120301b_rep_c6543%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17737%7Cactin.for.8403-9496.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8403-9496.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8403-9496.Ar_EST_120301b_rep_c17737%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8147%7Ccofilin.for.8464-9533.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8464-9533.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8464-9533.Ar_EST_120301b_rep_c8147%7Ccofilin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20113%7Cactin-depolymerizing.for.8505-9548.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8505-9548.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8505-9548.Ar_EST_120301b_rep_c20113%7Cactin-depolymerizing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7396%7Cuncharacterized.for.9271-10874.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.9271-10874.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.9271-10874.Ar_EST_120301b_rep_c7396%7Cuncharacterized.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12055%7Ccg18418-pa.for.10263-11531.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.10263-11531.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.10263-11531.Ar_EST_120301b_c12055%7Ccg18418-pa.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4634%7Cprotein.for.11895-13364.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.11895-13364.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.11895-13364.Ar_EST_120301b_rep_c4634%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1801%7Ctumor.for.11297-12731.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.11297-12731.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.11297-12731.Ar_EST_120301b_c1801%7Ctumor.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13099%7Ctumor.for.11414-12710.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.11414-12710.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.11414-12710.Ar_EST_120301b_c13099%7Ctumor.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13018%7Ctumor.for.11957-13023.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.11957-13023.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.11957-13023.Ar_EST_120301b_rep_c13018%7Ctumor.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10348%7Cnb405-g03.for.14482-15853.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.14482-15853.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.14482-15853.Ar_EST_120301b_c10348%7Cnb405-g03.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8849%7Carp2.for.20682-21692.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.20682-21692.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.20682-21692.Ar_EST_120301b_c8849%7Carp2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4195%7Cactin.for.20151-21811.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.20151-21811.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.20151-21811.Ar_EST_120301b_rep_c4195%7Cactin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12311%7Cc.for.29373-30667.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.29373-30667.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.29373-30667.Ar_EST_120301b_c12311%7Cc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12329%7Ctyrosine.for.32236-33500.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.32236-33500.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.32236-33500.Ar_EST_120301b_c12329%7Ctyrosine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7147%7Cprotein.for.34104-36543.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.34104-36543.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.34104-36543.Ar_EST_120301b_rep_c7147%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13197%7Cprotein.for.33828-35252.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33828-35252.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33828-35252.Ar_EST_120301b_rep_c13197%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12720%7Cprotein.for.35786-37179.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.35786-37179.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.35786-37179.Ar_EST_120301b_c12720%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16530%7Cprotein.for.37347-38707.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.37347-38707.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.37347-38707.Ar_EST_120301b_c16530%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6488%7Cperoxisomal.for.38875-40593.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.38875-40593.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.38875-40593.Ar_EST_120301b_rep_c6488%7Cperoxisomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3260%7Camp-dependent.for.38868-40952.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.38868-40952.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.38868-40952.Ar_EST_120301b_c3260%7Camp-dependent.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3131%7Ccarboxypeptidase.for.40763-42063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.40763-42063.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.40763-42063.Ar_EST_120301b_c3131%7Ccarboxypeptidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2100%7Ccarboxypeptidase.for.41304-43144.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.41304-43144.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.41304-43144.Ar_EST_120301b_c2100%7Ccarboxypeptidase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c98%7Ckinesin.for.44885-47294.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.44885-47294.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.44885-47294.Ar_EST_120301b_c98%7Ckinesin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18997%7Cchromosome.for.46355-47842.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.46355-47842.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.46355-47842.Ar_EST_120301b_c18997%7Cchromosome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3674%7Cviral.for.47108-49237.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.47108-49237.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.47108-49237.Ar_EST_120301b_c3674%7Cviral.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15127%7Cankyrin.for.50570-51694.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.50570-51694.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.50570-51694.Ar_EST_120301b_c15127%7Cankyrin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c40%7C2-oxoglutarate.for.51287-55022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.51287-55022.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.51287-55022.Ar_EST_120301b_c40%7C2-oxoglutarate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15498%7Cheat.for.55491-57055.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.55491-57055.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.55491-57055.Ar_EST_120301b_c15498%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18376%7Cheat.for.56061-57285.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.56061-57285.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.56061-57285.Ar_EST_120301b_rep_c18376%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10445%7Cacid.for.57635-59202.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.57635-59202.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.57635-59202.Ar_EST_120301b_c10445%7Cacid.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6230%7Cproteasome.for.67388-68889.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.67388-68889.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.67388-68889.Ar_EST_120301b_rep_c6230%7Cproteasome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6671%7Cproteasome.for.67396-68889.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.67396-68889.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.67396-68889.Ar_EST_120301b_rep_c6671%7Cproteasome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18287%7Cvirginia_state_96561_2_lrc14307.for.70151-71575.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.70151-71575.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.70151-71575.Ar_EST_120301b_c18287%7Cvirginia_state_96561_2_lrc14307.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c484%7Cring.for.75125-76585.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.75125-76585.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.75125-76585.Ar_EST_120301b_c484%7Cring.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c447%7Cring.for.75210-76875.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.75210-76875.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.75210-76875.Ar_EST_120301b_c447%7Cring.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9829%7Cap-3.for.76139-77892.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.76139-77892.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.76139-77892.Ar_EST_120301b_c9829%7Cap-3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3233%7Cdelta.for.77329-79597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.77329-79597.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.77329-79597.Ar_EST_120301b_c3233%7Cdelta.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11437%7Cap3d1.for.78861-80064.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.78861-80064.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.78861-80064.Ar_EST_120301b_c11437%7Cap3d1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig730%7Csucrose.for.80010-82314.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.80010-82314.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.80010-82314.120301b_Contig730%7Csucrose.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2139%7Cppaa.for.81749-83046.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.81749-83046.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.81749-83046.Ar_EST_120301b_c2139%7Cppaa.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12678%7Cf-box_lrr-repeat.for.82248-83524.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.82248-83524.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.82248-83524.Ar_EST_120301b_c12678%7Cf-box_lrr-repeat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17905%7Chypothetical.for.87957-89135.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.87957-89135.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.87957-89135.Ar_EST_120301b_rep_c17905%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5855%7Cagencourt_50136586.for.88105-89314.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.88105-89314.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.88105-89314.Ar_EST_120301b_rep_c5855%7Cagencourt_50136586.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18715%7Cest29560.for.88099-89406.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.88099-89406.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.88099-89406.Ar_EST_120301b_rep_c18715%7Cest29560.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6749%7Cpgsp0011j20.for.88034-89440.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.88034-89440.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.88034-89440.Ar_EST_120301b_rep_c6749%7Cpgsp0011j20.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4535%7Cnucleosome.for.87965-89314.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.87965-89314.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.87965-89314.Ar_EST_120301b_rep_c4535%7Cnucleosome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8267%7C60s.for.88442-89564.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.88442-89564.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.88442-89564.Ar_EST_120301b_rep_c8267%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1246%7Cucrcp01_052_g05_t3.for.87968-89140.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.87968-89140.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.87968-89140.Ar_EST_120301b_c1246%7Cucrcp01_052_g05_t3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19666%7Cpredicted.for.89138-90434.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89138-90434.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89138-90434.Ar_EST_120301b_rep_c19666%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6620%7Cprotein.for.89020-90455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89020-90455.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89020-90455.Ar_EST_120301b_rep_c6620%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10160%7Cubiquitin.for.94605-95858.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.94605-95858.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.94605-95858.Ar_EST_120301b_c10160%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig284%7Cubiquitin.for.93053-95923.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.93053-95923.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.93053-95923.120301b_Contig284%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2103%7Cubiquitin.for.92176-94058.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.92176-94058.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.92176-94058.Ar_EST_120301b_c2103%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3295%7Chistone.for.95180-96441.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.95180-96441.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.95180-96441.Ar_EST_120301b_c3295%7Chistone.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c49%7Cadenylyl.for.96722-98599.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.96722-98599.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.96722-98599.Ar_EST_120301b_c49%7Cadenylyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5021%7Cadenylyl.for.97187-98435.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.97187-98435.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.97187-98435.Ar_EST_120301b_rep_c5021%7Cadenylyl.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig169%7Ctrna-dihydrouridine.for.97813-99168.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.97813-99168.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.97813-99168.120301b_Contig169%7Ctrna-dihydrouridine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11871%7Chypothetical.for.99403-100272.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.99403-100272.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.99403-100272.Ar_EST_120301b_c11871%7Chypothetical.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 total clusters:38 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:38 now processing 0 total clusters:38 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:31 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:39 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:41 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:39 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:32 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:42 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:39 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:47 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:31 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:24 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086942%7Cgb%7CEFC40615%2E1%7C.for.1825-2792.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.1825-2792.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.1825-2792.gi%7C284086942%7Cgb%7CEFC40615%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089546%7Cgb%7CEFC43203%2E1%7C.for.4896-6250.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.4896-6250.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.4896-6250.gi%7C284089546%7Cgb%7CEFC43203%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095488%7Cgb%7CEFC49119%2E1%7C.for.4911-6250.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.4911-6250.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.4911-6250.gi%7C284095488%7Cgb%7CEFC49119%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097237%7Cgb%7CEFC50864%2E1%7C.for.6461-7958.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.6461-7958.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.6461-7958.gi%7C284097237%7Cgb%7CEFC50864%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084860%7Cgb%7CEFC38548%2E1%7C.for.7493-8939.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.7493-8939.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.7493-8939.gi%7C284084860%7Cgb%7CEFC38548%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082861%7Cgb%7CEFC36571%2E1%7C.for.8310-9520.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8310-9520.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8310-9520.gi%7C284082861%7Cgb%7CEFC36571%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093132%7Cgb%7CEFC46771%2E1%7C.for.9183-11023.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.9183-11023.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.9183-11023.gi%7C284093132%7Cgb%7CEFC46771%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089301%7Cgb%7CEFC42959%2E1%7C.for.10478-12039.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.10478-12039.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.10478-12039.gi%7C284089301%7Cgb%7CEFC42959%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095143%7Cgb%7CEFC48775%2E1%7C.for.10805-12048.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.10805-12048.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.10805-12048.gi%7C284095143%7Cgb%7CEFC48775%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093567%7Cgb%7CEFC47204%2E1%7C.for.13538-14646.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.13538-14646.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.13538-14646.gi%7C284093567%7Cgb%7CEFC47204%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083404%7Cgb%7CEFC37108%2E1%7C.for.15972-17740.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.15972-17740.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.15972-17740.gi%7C284083404%7Cgb%7CEFC37108%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088825%7Cgb%7CEFC42486%2E1%7C.for.16011-17746.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.16011-17746.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.16011-17746.gi%7C284088825%7Cgb%7CEFC42486%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084491%7Cgb%7CEFC38183%2E1%7C.for.20282-21918.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.20282-21918.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.20282-21918.gi%7C284084491%7Cgb%7CEFC38183%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083516%7Cgb%7CEFC37218%2E1%7C.for.24892-25899.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.24892-25899.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.24892-25899.gi%7C284083516%7Cgb%7CEFC37218%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083359%7Cgb%7CEFC37063%2E1%7C.for.33859-38447.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33859-38447.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33859-38447.gi%7C284083359%7Cgb%7CEFC37063%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082638%7Cgb%7CEFC36352%2E1%7C.for.33862-38664.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-38664.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-38664.gi%7C284082638%7Cgb%7CEFC36352%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086918%7Cgb%7CEFC40591%2E1%7C.for.33859-38664.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33859-38664.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33859-38664.gi%7C284086918%7Cgb%7CEFC40591%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083579%7Cgb%7CEFC37281%2E1%7C.for.33835-38453.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33835-38453.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33835-38453.gi%7C284083579%7Cgb%7CEFC37281%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096503%7Cgb%7CEFC50131%2E1%7C.for.33874-38615.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33874-38615.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33874-38615.gi%7C284096503%7Cgb%7CEFC50131%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091223%7Cgb%7CEFC44871%2E1%7C.for.33862-38447.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-38447.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-38447.gi%7C284091223%7Cgb%7CEFC44871%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086695%7Cgb%7CEFC40370%2E1%7C.for.33859-38459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33859-38459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33859-38459.gi%7C284086695%7Cgb%7CEFC40370%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093963%7Cgb%7CEFC47599%2E1%7C.for.33880-38616.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33880-38616.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33880-38616.gi%7C284093963%7Cgb%7CEFC47599%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089381%7Cgb%7CEFC43039%2E1%7C.for.33862-37772.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-37772.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-37772.gi%7C284089381%7Cgb%7CEFC43039%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086532%7Cgb%7CEFC40208%2E1%7C.for.33883-38447.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33883-38447.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33883-38447.gi%7C284086532%7Cgb%7CEFC40208%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083434%7Cgb%7CEFC37137%2E1%7C.for.33874-38459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33874-38459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33874-38459.gi%7C284083434%7Cgb%7CEFC37137%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084818%7Cgb%7CEFC38507%2E1%7C.for.33874-38459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33874-38459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33874-38459.gi%7C284084818%7Cgb%7CEFC38507%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092043%7Cgb%7CEFC45687%2E1%7C.for.33862-38357.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-38357.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-38357.gi%7C284092043%7Cgb%7CEFC45687%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083990%7Cgb%7CEFC37687%2E1%7C.for.33868-38453.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33868-38453.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33868-38453.gi%7C284083990%7Cgb%7CEFC37687%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094052%7Cgb%7CEFC47687%2E1%7C.for.33820-38636.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33820-38636.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33820-38636.gi%7C284094052%7Cgb%7CEFC47687%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085363%7Cgb%7CEFC39047%2E1%7C.for.33868-38435.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33868-38435.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33868-38435.gi%7C284085363%7Cgb%7CEFC39047%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086873%7Cgb%7CEFC40547%2E1%7C.for.33880-38607.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33880-38607.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33880-38607.gi%7C284086873%7Cgb%7CEFC40547%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083848%7Cgb%7CEFC37547%2E1%7C.for.33808-37841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33808-37841.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33808-37841.gi%7C284083848%7Cgb%7CEFC37547%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092675%7Cgb%7CEFC46316%2E1%7C.for.33862-38303.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-38303.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-38303.gi%7C284092675%7Cgb%7CEFC46316%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085442%7Cgb%7CEFC39126%2E1%7C.for.33874-38613.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33874-38613.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33874-38613.gi%7C284085442%7Cgb%7CEFC39126%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083453%7Cgb%7CEFC37156%2E1%7C.for.33880-38252.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33880-38252.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33880-38252.gi%7C284083453%7Cgb%7CEFC37156%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085964%7Cgb%7CEFC39644%2E1%7C.for.33820-37556.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33820-37556.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33820-37556.gi%7C284085964%7Cgb%7CEFC39644%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094593%7Cgb%7CEFC48227%2E1%7C.for.38975-41324.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.38975-41324.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.38975-41324.gi%7C284094593%7Cgb%7CEFC48227%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092016%7Cgb%7CEFC45660%2E1%7C.for.40930-43013.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.40930-43013.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.40930-43013.gi%7C284092016%7Cgb%7CEFC45660%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096618%7Cgb%7CEFC50246%2E1%7C.for.41125-42953.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.41125-42953.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.41125-42953.gi%7C284096618%7Cgb%7CEFC50246%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093000%7Cgb%7CEFC46640%2E1%7C.for.49360-50363.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.49360-50363.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.49360-50363.gi%7C284093000%7Cgb%7CEFC46640%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094695%7Cgb%7CEFC48328%2E1%7C.for.51149-54740.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.51149-54740.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.51149-54740.gi%7C284094695%7Cgb%7CEFC48328%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087414%7Cgb%7CEFC41084%2E1%7C.for.51149-54521.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.51149-54521.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.51149-54521.gi%7C284087414%7Cgb%7CEFC41084%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091446%7Cgb%7CEFC45093%2E1%7C.for.54887-57609.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57609.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57609.gi%7C284091446%7Cgb%7CEFC45093%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094819%7Cgb%7CEFC48452%2E1%7C.for.55097-57597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.55097-57597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.55097-57597.gi%7C284094819%7Cgb%7CEFC48452%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084267%7Cgb%7CEFC37961%2E1%7C.for.55241-57603.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.55241-57603.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.55241-57603.gi%7C284084267%7Cgb%7CEFC37961%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092327%7Cgb%7CEFC45969%2E1%7C.for.54986-57609.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54986-57609.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54986-57609.gi%7C284092327%7Cgb%7CEFC45969%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082776%7Cgb%7CEFC36488%2E1%7C.for.54887-57609.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57609.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57609.gi%7C284082776%7Cgb%7CEFC36488%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084526%7Cgb%7CEFC38218%2E1%7C.for.54956-57597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54956-57597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54956-57597.gi%7C284084526%7Cgb%7CEFC38218%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085272%7Cgb%7CEFC38957%2E1%7C.for.54887-57627.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57627.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57627.gi%7C284085272%7Cgb%7CEFC38957%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085240%7Cgb%7CEFC38925%2E1%7C.for.54887-57627.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57627.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57627.gi%7C284085240%7Cgb%7CEFC38925%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085885%7Cgb%7CEFC39565%2E1%7C.for.54887-57627.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57627.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57627.gi%7C284085885%7Cgb%7CEFC39565%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C33694258%7Cgb%7CAAQ24867%2E1%7C.for.54887-57609.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57609.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57609.gi%7C33694258%7Cgb%7CAAQ24867%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089387%7Cgb%7CEFC43045%2E1%7C.for.54887-57609.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57609.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57609.gi%7C284089387%7Cgb%7CEFC43045%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089144%7Cgb%7CEFC42803%2E1%7C.for.59122-61977.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59122-61977.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59122-61977.gi%7C284089144%7Cgb%7CEFC42803%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082068%7Cgb%7CEFC35853%2E1%7C.for.59104-61917.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59104-61917.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59104-61917.gi%7C284082068%7Cgb%7CEFC35853%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084087%7Cgb%7CEFC37783%2E1%7C.for.59086-61917.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59086-61917.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59086-61917.gi%7C284084087%7Cgb%7CEFC37783%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088982%7Cgb%7CEFC42642%2E1%7C.for.59083-61911.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59083-61911.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59083-61911.gi%7C284088982%7Cgb%7CEFC42642%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089876%7Cgb%7CEFC43531%2E1%7C.for.59116-62028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59116-62028.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59116-62028.gi%7C284089876%7Cgb%7CEFC43531%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083134%7Cgb%7CEFC36841%2E1%7C.for.59113-61911.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59113-61911.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59113-61911.gi%7C284083134%7Cgb%7CEFC36841%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093774%7Cgb%7CEFC47410%2E1%7C.for.59047-62019.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59047-62019.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59047-62019.gi%7C284093774%7Cgb%7CEFC47410%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087481%7Cgb%7CEFC41150%2E1%7C.for.59086-61956.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59086-61956.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59086-61956.gi%7C284087481%7Cgb%7CEFC41150%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086252%7Cgb%7CEFC39930%2E1%7C.for.59212-61932.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59212-61932.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59212-61932.gi%7C284086252%7Cgb%7CEFC39930%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089785%7Cgb%7CEFC43440%2E1%7C.for.59116-62019.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59116-62019.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59116-62019.gi%7C284089785%7Cgb%7CEFC43440%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089211%7Cgb%7CEFC42870%2E1%7C.for.59146-61911.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59146-61911.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59146-61911.gi%7C284089211%7Cgb%7CEFC42870%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084234%7Cgb%7CEFC37929%2E1%7C.for.59059-62019.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59059-62019.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59059-62019.gi%7C284084234%7Cgb%7CEFC37929%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089683%7Cgb%7CEFC43339%2E1%7C.for.59092-61917.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-61917.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-61917.gi%7C284089683%7Cgb%7CEFC43339%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081057%7Cgb%7CEFC35279%2E1%7C.for.59092-62016.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-62016.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-62016.gi%7C284081057%7Cgb%7CEFC35279%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093932%7Cgb%7CEFC47568%2E1%7C.for.59104-61917.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59104-61917.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59104-61917.gi%7C284093932%7Cgb%7CEFC47568%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082314%7Cgb%7CEFC36048%2E1%7C.for.59092-61917.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-61917.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-61917.gi%7C284082314%7Cgb%7CEFC36048%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087499%7Cgb%7CEFC41168%2E1%7C.for.59203-61941.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59203-61941.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59203-61941.gi%7C284087499%7Cgb%7CEFC41168%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094795%7Cgb%7CEFC48428%2E1%7C.for.59119-62010.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59119-62010.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59119-62010.gi%7C284094795%7Cgb%7CEFC48428%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084505%7Cgb%7CEFC38197%2E1%7C.for.59116-61923.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59116-61923.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59116-61923.gi%7C284084505%7Cgb%7CEFC38197%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082806%7Cgb%7CEFC36517%2E1%7C.for.59134-61917.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59134-61917.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59134-61917.gi%7C284082806%7Cgb%7CEFC36517%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084837%7Cgb%7CEFC38526%2E1%7C.for.59092-62028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-62028.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-62028.gi%7C284084837%7Cgb%7CEFC38526%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091590%7Cgb%7CEFC45236%2E1%7C.for.59116-61968.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59116-61968.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59116-61968.gi%7C284091590%7Cgb%7CEFC45236%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087889%7Cgb%7CEFC41556%2E1%7C.for.59095-62019.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59095-62019.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59095-62019.gi%7C284087889%7Cgb%7CEFC41556%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084171%7Cgb%7CEFC37866%2E1%7C.for.59092-61917.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-61917.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-61917.gi%7C284084171%7Cgb%7CEFC37866%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093137%7Cgb%7CEFC46776%2E1%7C.for.59107-62082.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59107-62082.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59107-62082.gi%7C284093137%7Cgb%7CEFC46776%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087305%7Cgb%7CEFC40976%2E1%7C.for.59059-62067.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59059-62067.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59059-62067.gi%7C284087305%7Cgb%7CEFC40976%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092523%7Cgb%7CEFC46165%2E1%7C.for.59086-61962.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59086-61962.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59086-61962.gi%7C284092523%7Cgb%7CEFC46165%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083624%7Cgb%7CEFC37325%2E1%7C.for.59092-61911.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-61911.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-61911.gi%7C284083624%7Cgb%7CEFC37325%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092041%7Cgb%7CEFC45685%2E1%7C.for.59206-61941.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59206-61941.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59206-61941.gi%7C284092041%7Cgb%7CEFC45685%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080810%7Cgb%7CEFC35195%2E1%7C.for.60500-61911.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.60500-61911.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.60500-61911.gi%7C284080810%7Cgb%7CEFC35195%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092124%7Cgb%7CEFC45767%2E1%7C.for.67410-68831.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.67410-68831.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.67410-68831.gi%7C284092124%7Cgb%7CEFC45767%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090008%7Cgb%7CEFC43662%2E1%7C.for.78206-80506.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.78206-80506.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.78206-80506.gi%7C284090008%7Cgb%7CEFC43662%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096915%7Cgb%7CEFC50542%2E1%7C.for.80135-82254.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.80135-82254.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.80135-82254.gi%7C284096915%7Cgb%7CEFC50542%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085103%7Cgb%7CEFC38789%2E1%7C.for.80057-82221.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.80057-82221.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.80057-82221.gi%7C284085103%7Cgb%7CEFC38789%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095199%7Cgb%7CEFC48830%2E1%7C.for.84894-87733.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.84894-87733.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.84894-87733.gi%7C284095199%7Cgb%7CEFC48830%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090474%7Cgb%7CEFC44126%2E1%7C.for.89200-90179.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89200-90179.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89200-90179.gi%7C284090474%7Cgb%7CEFC44126%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088600%7Cgb%7CEFC42263%2E1%7C.for.89823-91248.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89823-91248.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89823-91248.gi%7C284088600%7Cgb%7CEFC42263%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089013%7Cgb%7CEFC42673%2E1%7C.for.89936-91248.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89936-91248.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89936-91248.gi%7C284089013%7Cgb%7CEFC42673%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089693%7Cgb%7CEFC43349%2E1%7C.for.89820-91221.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89820-91221.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89820-91221.gi%7C284089693%7Cgb%7CEFC43349%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088684%7Cgb%7CEFC42346%2E1%7C.for.89826-91155.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89826-91155.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89826-91155.gi%7C284088684%7Cgb%7CEFC42346%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090665%7Cgb%7CEFC44316%2E1%7C.for.93196-95879.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.93196-95879.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.93196-95879.gi%7C284090665%7Cgb%7CEFC44316%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095605%7Cgb%7CEFC49235%2E1%7C.for.96759-98430.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.96759-98430.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.96759-98430.gi%7C284095605%7Cgb%7CEFC49235%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 ...processing 0 of 10 ...processing 1 of 10 ...processing 2 of 10 ...processing 3 of 10 ...processing 4 of 10 ...processing 5 of 10 ...processing 6 of 10 ...processing 7 of 10 ...processing 8 of 10 ...processing 9 of 10 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 22 ...processing 1 of 22 ...processing 2 of 22 ...processing 3 of 22 ...processing 4 of 22 ...processing 5 of 22 ...processing 6 of 22 ...processing 7 of 22 ...processing 8 of 22 ...processing 9 of 22 ...processing 10 of 22 ...processing 11 of 22 ...processing 12 of 22 ...processing 13 of 22 ...processing 14 of 22 ...processing 15 of 22 ...processing 16 of 22 ...processing 17 of 22 ...processing 18 of 22 ...processing 19 of 22 ...trimming the rest total clusters:23 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:23 now processing 0 ...processing 0 of 11 ...processing 1 of 11 ...processing 2 of 11 ...processing 3 of 11 ...processing 4 of 11 ...processing 5 of 11 ...processing 6 of 11 ...processing 7 of 11 ...processing 8 of 11 ...processing 9 of 11 ...processing 10 of 11 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 total clusters:23 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:23 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 26 ...processing 1 of 26 ...processing 2 of 26 ...processing 3 of 26 ...processing 4 of 26 ...processing 5 of 26 ...processing 6 of 26 ...processing 7 of 26 ...processing 8 of 26 ...processing 9 of 26 ...processing 10 of 26 ...processing 11 of 26 ...processing 12 of 26 ...processing 13 of 26 ...processing 14 of 26 ...processing 15 of 26 ...processing 16 of 26 ...processing 17 of 26 ...processing 18 of 26 ...processing 19 of 26 ...processing 20 of 26 ...processing 21 of 26 ...processing 22 of 26 ...trimming the rest total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 10 ...processing 1 of 10 ...processing 2 of 10 ...processing 3 of 10 ...processing 4 of 10 ...processing 5 of 10 ...processing 6 of 10 ...processing 7 of 10 ...processing 8 of 10 ...processing 9 of 10 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 total clusters:21 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:15 now processing 0 total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 total clusters:15 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 10 ...processing 1 of 10 ...processing 2 of 10 ...processing 3 of 10 ...processing 4 of 10 ...processing 5 of 10 ...processing 6 of 10 ...processing 7 of 10 ...processing 8 of 10 ...processing 9 of 10 total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:15 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:15 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 20 ...processing 1 of 20 ...processing 2 of 20 ...processing 3 of 20 ...processing 4 of 20 ...processing 5 of 20 ...processing 6 of 20 ...processing 7 of 20 ...processing 8 of 20 ...processing 9 of 20 ...processing 10 of 20 ...processing 11 of 20 ...processing 12 of 20 ...processing 13 of 20 ...processing 14 of 20 ...processing 15 of 20 ...processing 16 of 20 ...processing 17 of 20 ...processing 18 of 20 ...processing 19 of 20 ...trimming the rest ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 20 ...processing 1 of 20 ...processing 2 of 20 ...processing 3 of 20 ...processing 4 of 20 ...processing 5 of 20 ...processing 6 of 20 ...processing 7 of 20 ...processing 8 of 20 ...processing 9 of 20 ...processing 10 of 20 ...processing 11 of 20 ...processing 12 of 20 ...processing 13 of 20 ...processing 14 of 20 ...processing 15 of 20 ...processing 16 of 20 ...processing 17 of 20 ...processing 18 of 20 ...processing 19 of 20 ...trimming the rest total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 ...processing 0 of 2 ...processing 1 of 2 total clusters:29 now processing 0 total clusters:29 now processing 0 total clusters:29 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.6660-7758.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.6660-7758.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.6660-7758.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.10462-11848.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.10462-11848.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.10462-11848.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.13353-14446.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.13353-14446.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.13353-14446.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.14681-15653.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.14681-15653.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.14681-15653.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.20345-21718.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.20345-21718.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.20345-21718.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.32435-33316.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.32435-33316.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.32435-33316.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.39067-42944.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.39067-42944.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.39067-42944.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.45084-49037.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.45084-49037.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.45084-49037.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.59291-61882.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.59291-61882.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.59291-61882.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.80209-82114.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.80209-82114.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.80209-82114.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.88298-89260.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.88298-89260.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.88298-89260.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.92375-95723.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.92375-95723.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.92375-95723.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.97137-98274.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.97137-98274.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.97137-98274.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.533-4449.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.533-4449.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.533-4449.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.4956-6050.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.4956-6050.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.4956-6050.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.7628-10823.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.7628-10823.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.7628-10823.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.11496-13164.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.11496-13164.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.11496-13164.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.24994-25708.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.24994-25708.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.24994-25708.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.29572-30475.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.29572-30475.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.29572-30475.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.34007-38507.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.34007-38507.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.34007-38507.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.50769-54822.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.50769-54822.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.50769-54822.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.55086-57427.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.55086-57427.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.55086-57427.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.57834-59002.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.57834-59002.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.57834-59002.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.67587-68691.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.67587-68691.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.67587-68691.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.70350-71375.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.70350-71375.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.70350-71375.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.75324-80306.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.75324-80306.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.75324-80306.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.81948-83324.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.81948-83324.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.81948-83324.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.85060-87533.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.85060-87533.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.85060-87533.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.89219-91048.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.89219-91048.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.89219-91048.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.95379-96241.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.95379-96241.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.95379-96241.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.96958-98230.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.96958-98230.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.96958-98230.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.99602-100272.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.99602-100272.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.99602-100272.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C41 Length: 154535 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:4 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:2 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:1 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:8 current j:0 j_size:8 current j:1 j_size:8 current j:2 j_size:8 current j:3 j_size:8 current j:4 j_size:8 current j:5 j_size:8 current j:6 j_size:8 current j:7 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C41.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C41.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:5 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18484%7Chydroxyproline-rich.for.2187-3523.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.2187-3523.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.2187-3523.Ar_EST_120301b_c18484%7Chydroxyproline-rich.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1478%7Cring.for.4286-5745.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.4286-5745.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.4286-5745.Ar_EST_120301b_c1478%7Cring.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17193%7Cf-box.for.5269-6583.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.5269-6583.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.5269-6583.Ar_EST_120301b_c17193%7Cf-box.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4442%7Ceukaryotic.for.10165-11796.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.10165-11796.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.10165-11796.Ar_EST_120301b_rep_c4442%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8843%7Cx-ray.for.7105-8533.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7105-8533.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7105-8533.Ar_EST_120301b_c8843%7Cx-ray.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14364%7Ceukaryotic.for.7508-11779.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7508-11779.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7508-11779.Ar_EST_120301b_rep_c14364%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3817%7Cx-ray.for.7840-9618.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7840-9618.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7840-9618.Ar_EST_120301b_c3817%7Cx-ray.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9670%7Ceukaryotic.for.10491-11699.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.10491-11699.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.10491-11699.Ar_EST_120301b_rep_c9670%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19424%7Cx-ray.for.7408-8427.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7408-8427.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7408-8427.Ar_EST_120301b_rep_c19424%7Cx-ray.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8252%7Cser.for.13210-14765.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.13210-14765.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.13210-14765.Ar_EST_120301b_c8252%7Cser.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11587%7Cpredicted.for.14122-15513.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.14122-15513.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.14122-15513.Ar_EST_120301b_c11587%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3305%7Calpha-l-glutamate.for.16307-18409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.16307-18409.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.16307-18409.Ar_EST_120301b_c3305%7Calpha-l-glutamate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11608%7Cribosomal.for.16177-17586.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.16177-17586.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.16177-17586.Ar_EST_120301b_c11608%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8254%7Calpha-l-glutamate.for.17251-18334.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.17251-18334.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.17251-18334.Ar_EST_120301b_c8254%7Calpha-l-glutamate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1594%7Cformate.for.18210-20004.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.18210-20004.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.18210-20004.Ar_EST_120301b_c1594%7Cformate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9408%7Chypothetical.for.19279-21053.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.19279-21053.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.19279-21053.Ar_EST_120301b_c9408%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17501%7Csignal.for.21176-22828.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.21176-22828.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.21176-22828.Ar_EST_120301b_c17501%7Csignal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6353%7Ceukaryotic.for.25430-27136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.25430-27136.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.25430-27136.Ar_EST_120301b_rep_c6353%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5611%7Ceukaryotic.for.24776-27122.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.24776-27122.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.24776-27122.Ar_EST_120301b_rep_c5611%7Ceukaryotic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig227%7Czinc.for.26362-27835.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.26362-27835.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.26362-27835.120301b_Contig227%7Czinc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20371%7Chypothetical.for.27387-29476.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.27387-29476.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.27387-29476.Ar_EST_120301b_c20371%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2180%7Cpredicted.for.28305-29601.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.28305-29601.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.28305-29601.Ar_EST_120301b_c2180%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c249%7Ccalmodulin.for.29478-30871.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29478-30871.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29478-30871.Ar_EST_120301b_c249%7Ccalmodulin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19994%7Cacyl-.for.30216-31226.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.30216-31226.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.30216-31226.Ar_EST_120301b_rep_c19994%7Cacyl-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1202%7Cwd-40.for.31015-32417.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.31015-32417.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.31015-32417.120301b_Contig1202%7Cwd-40.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13644%7Cserine.for.30760-32079.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.30760-32079.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.30760-32079.Ar_EST_120301b_c13644%7Cserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13183%7C---NA---.for.33943-35220.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.33943-35220.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.33943-35220.Ar_EST_120301b_c13183%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9362%7Cprotein.for.34412-35861.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.34412-35861.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.34412-35861.Ar_EST_120301b_c9362%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c276%7Cprotein.for.35235-36619.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.35235-36619.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.35235-36619.Ar_EST_120301b_c276%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15761%7C---NA---.for.36991-38330.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.36991-38330.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.36991-38330.Ar_EST_120301b_c15761%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8595%7C---NA---.for.38092-39496.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.38092-39496.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.38092-39496.Ar_EST_120301b_c8595%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14176%7Cdg2-90j1.for.39278-40527.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.39278-40527.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.39278-40527.Ar_EST_120301b_c14176%7Cdg2-90j1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17402%7Cprotein.for.40329-41323.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.40329-41323.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.40329-41323.Ar_EST_120301b_c17402%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15139%7C-.for.41265-42587.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.41265-42587.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.41265-42587.Ar_EST_120301b_c15139%7C-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18485%7Cmicrotubule-associated.for.41154-42264.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.41154-42264.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.41154-42264.Ar_EST_120301b_c18485%7Cmicrotubule-associated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2523%7Cnuclear.for.41989-43342.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.41989-43342.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.41989-43342.Ar_EST_120301b_c2523%7Cnuclear.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1188%7Ccytoplasmic.for.43231-44554.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.43231-44554.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.43231-44554.Ar_EST_120301b_c1188%7Ccytoplasmic.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15535%7Cmajor.for.44232-45248.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.44232-45248.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.44232-45248.Ar_EST_120301b_c15535%7Cmajor.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13992%7Cmajor.for.45074-46353.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.45074-46353.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.45074-46353.Ar_EST_120301b_c13992%7Cmajor.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5585%7Cbax.for.51794-53356.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.51794-53356.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.51794-53356.Ar_EST_120301b_rep_c5585%7Cbax.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig746%7Chypothetical.for.53525-54999.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.53525-54999.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.53525-54999.120301b_Contig746%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10918%7Csomething.for.56330-57676.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.56330-57676.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.56330-57676.Ar_EST_120301b_c10918%7Csomething.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11928%7Csomething.for.57498-59333.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.57498-59333.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.57498-59333.Ar_EST_120301b_c11928%7Csomething.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17010%7Cleucine.for.57436-58393.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.57436-58393.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.57436-58393.Ar_EST_120301b_c17010%7Cleucine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c211%7Cbeta-.for.65659-67125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.65659-67125.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.65659-67125.Ar_EST_120301b_c211%7Cbeta-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig490%7Cg-protein.for.66457-68388.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66457-68388.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66457-68388.120301b_Contig490%7Cg-protein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig117%7Cheat.for.67633-70247.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.67633-70247.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.67633-70247.120301b_Contig117%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2590%7Cmethyltransferase.for.70139-71511.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.70139-71511.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.70139-71511.Ar_EST_120301b_c2590%7Cmethyltransferase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17137%7Chypothetical.for.70937-72211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.70937-72211.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.70937-72211.Ar_EST_120301b_c17137%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12127%7Cbag.for.72882-74181.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.72882-74181.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.72882-74181.Ar_EST_120301b_c12127%7Cbag.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11701%7Calpha.for.73539-75194.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.73539-75194.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.73539-75194.Ar_EST_120301b_c11701%7Calpha.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11059%7C---NA---.for.74908-75962.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.74908-75962.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.74908-75962.Ar_EST_120301b_c11059%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14862%7Cpredicted.for.75374-76344.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.75374-76344.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.75374-76344.Ar_EST_120301b_c14862%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c21%7Ctrehalose-6-phosphate.for.75748-78779.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.75748-78779.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.75748-78779.Ar_EST_120301b_c21%7Ctrehalose-6-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15607%7C-trehalose-phosphate.for.77246-78385.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.77246-78385.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.77246-78385.Ar_EST_120301b_rep_c15607%7C-trehalose-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15030%7C-trehalose-phosphate.for.75564-76902.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.75564-76902.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.75564-76902.Ar_EST_120301b_c15030%7C-trehalose-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16719%7C---NA---.for.78376-79899.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.78376-79899.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.78376-79899.Ar_EST_120301b_c16719%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4679%7Ccalcium.for.79728-81631.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.79728-81631.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.79728-81631.Ar_EST_120301b_rep_c4679%7Ccalcium.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6123%7Ccalcium-binding.for.79688-81126.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.79688-81126.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.79688-81126.Ar_EST_120301b_rep_c6123%7Ccalcium-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c192%7C40s.for.82195-83413.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82195-83413.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82195-83413.Ar_EST_120301b_c192%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19660%7C40s.for.82241-83413.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82241-83413.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82241-83413.Ar_EST_120301b_rep_c19660%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20551%7C40s.for.82228-83501.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82228-83501.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82228-83501.Ar_EST_120301b_rep_c20551%7C40s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19968%7Cribosomal.for.82233-83376.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82233-83376.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82233-83376.Ar_EST_120301b_rep_c19968%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19279%7Cgolgi.for.83109-84409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.83109-84409.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.83109-84409.Ar_EST_120301b_c19279%7Cgolgi.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12101%7Cgolgi.for.83398-84791.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.83398-84791.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.83398-84791.Ar_EST_120301b_c12101%7Cgolgi.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14459%7Cterminal.for.85226-86142.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.85226-86142.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.85226-86142.Ar_EST_120301b_c14459%7Cterminal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11091%7Ccell.for.87167-88894.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.87167-88894.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.87167-88894.Ar_EST_120301b_c11091%7Ccell.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16049%7Cn-acetylglucosaminylphosphatidylinositol.for.91301-92567.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.91301-92567.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.91301-92567.Ar_EST_120301b_c16049%7Cn-acetylglucosaminylphosphatidylinositol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10463%7Cpolycystin.for.93843-95353.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.93843-95353.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.93843-95353.Ar_EST_120301b_c10463%7Cpolycystin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19139%7C---NA---.for.97938-99210.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.97938-99210.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.97938-99210.Ar_EST_120301b_c19139%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19439%7C1106908803323.for.97484-98616.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.97484-98616.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.97484-98616.Ar_EST_120301b_c19439%7C1106908803323.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8788%7Cp02431_mmt-2407_g07_026.for.97690-99044.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.97690-99044.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.97690-99044.Ar_EST_120301b_c8788%7Cp02431_mmt-2407_g07_026.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18344%7Csjs.for.102945-104249.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.102945-104249.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.102945-104249.Ar_EST_120301b_c18344%7Csjs.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11384%7Ctubby.for.103787-105337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.103787-105337.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.103787-105337.Ar_EST_120301b_c11384%7Ctubby.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1737%7Cgaf.for.105107-106111.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.105107-106111.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.105107-106111.Ar_EST_120301b_c1737%7Cgaf.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c764%7Cwd.for.108045-109340.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.108045-109340.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.108045-109340.Ar_EST_120301b_c764%7Cwd.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig429%7Cprotein.for.108478-110082.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.108478-110082.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.108478-110082.120301b_Contig429%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11559%7Csodium-coupled.for.109747-111803.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.109747-111803.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.109747-111803.Ar_EST_120301b_c11559%7Csodium-coupled.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4314%7Cadp-ribosylation.for.112569-113963.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112569-113963.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112569-113963.Ar_EST_120301b_rep_c4314%7Cadp-ribosylation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c564%7Cribosomal.for.113229-114795.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.113229-114795.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.113229-114795.Ar_EST_120301b_c564%7Cribosomal.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6629%7Chypothetical.for.116163-117627.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.116163-117627.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.116163-117627.Ar_EST_120301b_rep_c6629%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20242%7Chydra.for.116171-117286.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.116171-117286.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.116171-117286.Ar_EST_120301b_rep_c20242%7Chydra.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17271%7Chx350990.for.118102-119434.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.118102-119434.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.118102-119434.Ar_EST_120301b_c17271%7Chx350990.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13812%7Creinhardtii.for.123923-125193.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.123923-125193.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.123923-125193.Ar_EST_120301b_c13812%7Creinhardtii.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8787%7Ctraf-type.for.127786-129861.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.127786-129861.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.127786-129861.Ar_EST_120301b_c8787%7Ctraf-type.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1865%7Cprotein.for.130511-131973.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.130511-131973.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.130511-131973.Ar_EST_120301b_c1865%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17512%7Cpredicted.for.131444-132940.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.131444-132940.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.131444-132940.Ar_EST_120301b_c17512%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10556%7Cpredicted.for.132788-134373.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.132788-134373.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.132788-134373.Ar_EST_120301b_c10556%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig718%7Cci569863.for.134029-135481.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.134029-135481.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.134029-135481.120301b_Contig718%7Cci569863.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2633%7Cprotein.for.134795-136208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.134795-136208.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.134795-136208.Ar_EST_120301b_c2633%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16910%7Cabc.for.137462-139213.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.137462-139213.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.137462-139213.Ar_EST_120301b_c16910%7Cabc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1871%7Catp-binding.for.139326-141444.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.139326-141444.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.139326-141444.Ar_EST_120301b_c1871%7Catp-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17554%7Cby908063.for.138639-140232.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.138639-140232.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.138639-140232.Ar_EST_120301b_c17554%7Cby908063.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11060%7Cpredicted.for.141427-142899.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.141427-142899.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.141427-142899.Ar_EST_120301b_c11060%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13278%7Ca65o08n1.for.142316-143625.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.142316-143625.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.142316-143625.Ar_EST_120301b_c13278%7Ca65o08n1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17268%7C---NA---.for.142931-144237.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.142931-144237.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.142931-144237.Ar_EST_120301b_c17268%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15928%7Cig.for.146738-148264.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.146738-148264.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.146738-148264.Ar_EST_120301b_c15928%7Cig.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2769%7Cprotein.for.149095-151248.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.149095-151248.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.149095-151248.Ar_EST_120301b_c2769%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2370%7Cglycosylphosphatidylinositol.for.150499-151720.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.150499-151720.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.150499-151720.Ar_EST_120301b_c2370%7Cglycosylphosphatidylinositol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13294%7Cglycosylphosphatidylinositol.for.151378-152573.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.151378-152573.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.151378-152573.Ar_EST_120301b_c13294%7Cglycosylphosphatidylinositol.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:72 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:72 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:72 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:72 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:72 now processing 0 total clusters:72 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 total clusters:72 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:40 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:35 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:35 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:43 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:26 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:49 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:44 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:49 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:36 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:41 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081903%7Cgb%7CEFC35733%2E1%7C.for.7123-9212.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7123-9212.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7123-9212.gi%7C284081903%7Cgb%7CEFC35733%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084058%7Cgb%7CEFC37754%2E1%7C.for.7123-8168.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7123-8168.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7123-8168.gi%7C284084058%7Cgb%7CEFC37754%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091255%7Cgb%7CEFC44903%2E1%7C.for.10243-11777.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.10243-11777.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.10243-11777.gi%7C284091255%7Cgb%7CEFC44903%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089366%7Cgb%7CEFC43024%2E1%7C.for.14773-16385.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.14773-16385.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.14773-16385.gi%7C284089366%7Cgb%7CEFC43024%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084895%7Cgb%7CEFC38583%2E1%7C.for.16319-18374.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.16319-18374.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.16319-18374.gi%7C284084895%7Cgb%7CEFC38583%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090994%7Cgb%7CEFC44643%2E1%7C.for.17715-18874.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.17715-18874.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.17715-18874.gi%7C284090994%7Cgb%7CEFC44643%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092047%7Cgb%7CEFC45691%2E1%7C.for.18398-20016.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.18398-20016.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.18398-20016.gi%7C284092047%7Cgb%7CEFC45691%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081730%7Cgb%7CEFC35619%2E1%7C.for.18434-19503.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.18434-19503.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.18434-19503.gi%7C284081730%7Cgb%7CEFC35619%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084767%7Cgb%7CEFC38456%2E1%7C.for.18383-20040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.18383-20040.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.18383-20040.gi%7C284084767%7Cgb%7CEFC38456%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086665%7Cgb%7CEFC40340%2E1%7C.for.23275-24275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.23275-24275.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.23275-24275.gi%7C284086665%7Cgb%7CEFC40340%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086663%7Cgb%7CEFC40338%2E1%7C.for.23281-24302.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.23281-24302.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.23281-24302.gi%7C284086663%7Cgb%7CEFC40338%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089940%7Cgb%7CEFC43594%2E1%7C.for.24971-27117.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.24971-27117.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.24971-27117.gi%7C284089940%7Cgb%7CEFC43594%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C1705567%7Csp%7CP53440%2E1%7CCALMF_NAEGR.for.29497-30869.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.gi%7C1705567%7Csp%7CP53440%2E1%7CCALMF_NAEGR.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097162%7Cgb%7CEFC50789%2E1%7C.for.29497-30869.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.gi%7C284097162%7Cgb%7CEFC50789%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085072%7Cgb%7CEFC38759%2E1%7C.for.29566-30728.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29566-30728.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29566-30728.gi%7C284085072%7Cgb%7CEFC38759%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C311815490%7Cemb%7CCBX84382%2E1%7C.for.29497-30869.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.gi%7C311815490%7Cemb%7CCBX84382%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C206984671%7Cemb%7CCAR80909%2E1%7C.for.29497-30869.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.gi%7C206984671%7Cemb%7CCAR80909%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C458232%7Cgb%7CAAA81897%2E1%7C.for.29497-30869.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.gi%7C458232%7Cgb%7CAAA81897%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091622%7Cgb%7CEFC45268%2E1%7C.for.30178-31220.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.30178-31220.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.30178-31220.gi%7C284091622%7Cgb%7CEFC45268%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081107%7Cgb%7CEFC35296%2E1%7C.for.44270-45567.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.44270-45567.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.44270-45567.gi%7C284081107%7Cgb%7CEFC35296%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093209%7Cgb%7CEFC46848%2E1%7C.for.49527-51284.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.49527-51284.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.49527-51284.gi%7C284093209%7Cgb%7CEFC46848%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092652%7Cgb%7CEFC46293%2E1%7C.for.66531-68353.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66531-68353.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66531-68353.gi%7C284092652%7Cgb%7CEFC46293%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084712%7Cgb%7CEFC38402%2E1%7C.for.66531-68326.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66531-68326.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66531-68326.gi%7C284084712%7Cgb%7CEFC38402%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083518%7Cgb%7CEFC37220%2E1%7C.for.66540-68347.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66540-68347.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66540-68347.gi%7C284083518%7Cgb%7CEFC37220%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095980%7Cgb%7CEFC49609%2E1%7C.for.66525-68335.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66525-68335.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66525-68335.gi%7C284095980%7Cgb%7CEFC49609%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091782%7Cgb%7CEFC45427%2E1%7C.for.66957-68161.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66957-68161.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66957-68161.gi%7C284091782%7Cgb%7CEFC45427%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085503%7Cgb%7CEFC39186%2E1%7C.for.66549-68335.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66549-68335.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66549-68335.gi%7C284085503%7Cgb%7CEFC39186%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093388%7Cgb%7CEFC47026%2E1%7C.for.67134-68098.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.67134-68098.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.67134-68098.gi%7C284093388%7Cgb%7CEFC47026%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095344%7Cgb%7CEFC48975%2E1%7C.for.66495-68329.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66495-68329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66495-68329.gi%7C284095344%7Cgb%7CEFC48975%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095754%7Cgb%7CEFC49384%2E1%7C.for.66543-68347.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66543-68347.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66543-68347.gi%7C284095754%7Cgb%7CEFC49384%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087598%7Cgb%7CEFC41267%2E1%7C.for.67616-70365.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.67616-70365.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.67616-70365.gi%7C284087598%7Cgb%7CEFC41267%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095546%7Cgb%7CEFC49176%2E1%7C.for.75463-77811.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.75463-77811.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.75463-77811.gi%7C284095546%7Cgb%7CEFC49176%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095547%7Cgb%7CEFC49177%2E1%7C.for.77195-78546.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.77195-78546.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.77195-78546.gi%7C284095547%7Cgb%7CEFC49177%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091342%7Cgb%7CEFC44989%2E1%7C.for.79831-81624.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.79831-81624.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.79831-81624.gi%7C284091342%7Cgb%7CEFC44989%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092680%7Cgb%7CEFC46321%2E1%7C.for.82221-83413.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82221-83413.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82221-83413.gi%7C284092680%7Cgb%7CEFC46321%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096588%7Cgb%7CEFC50216%2E1%7C.for.83361-84536.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.83361-84536.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.83361-84536.gi%7C284096588%7Cgb%7CEFC50216%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090846%7Cgb%7CEFC44496%2E1%7C.for.84362-86850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.84362-86850.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.84362-86850.gi%7C284090846%7Cgb%7CEFC44496%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089235%7Cgb%7CEFC42894%2E1%7C.for.88402-90836.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.88402-90836.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.88402-90836.gi%7C284089235%7Cgb%7CEFC42894%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091855%7Cgb%7CEFC45500%2E1%7C.for.91109-92648.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.91109-92648.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.91109-92648.gi%7C284091855%7Cgb%7CEFC45500%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087921%7Cgb%7CEFC41587%2E1%7C.for.96505-97541.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.96505-97541.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.96505-97541.gi%7C284087921%7Cgb%7CEFC41587%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086204%7Cgb%7CEFC39882%2E1%7C.for.100754-101769.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.100754-101769.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.100754-101769.gi%7C284086204%7Cgb%7CEFC39882%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088301%7Cgb%7CEFC41965%2E1%7C.for.104798-105909.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.104798-105909.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.104798-105909.gi%7C284088301%7Cgb%7CEFC41965%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090924%7Cgb%7CEFC44573%2E1%7C.for.108070-110047.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.108070-110047.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.108070-110047.gi%7C284090924%7Cgb%7CEFC44573%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097066%7Cgb%7CEFC50693%2E1%7C.for.111783-113222.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.111783-113222.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.111783-113222.gi%7C284097066%7Cgb%7CEFC50693%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090632%7Cgb%7CEFC44283%2E1%7C.for.112604-113928.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112604-113928.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112604-113928.gi%7C284090632%7Cgb%7CEFC44283%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083438%7Cgb%7CEFC37141%2E1%7C.for.112580-113916.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112580-113916.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112580-113916.gi%7C284083438%7Cgb%7CEFC37141%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085981%7Cgb%7CEFC39661%2E1%7C.for.112604-113919.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112604-113919.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112604-113919.gi%7C284085981%7Cgb%7CEFC39661%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089356%7Cgb%7CEFC43014%2E1%7C.for.112604-113919.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112604-113919.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112604-113919.gi%7C284089356%7Cgb%7CEFC43014%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094385%7Cgb%7CEFC48019%2E1%7C.for.113740-114929.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.113740-114929.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.113740-114929.gi%7C284094385%7Cgb%7CEFC48019%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097074%7Cgb%7CEFC50701%2E1%7C.for.115749-116791.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.115749-116791.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.115749-116791.gi%7C284097074%7Cgb%7CEFC50701%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084567%7Cgb%7CEFC38258%2E1%7C.for.115767-116794.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.115767-116794.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.115767-116794.gi%7C284084567%7Cgb%7CEFC38258%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093075%7Cgb%7CEFC46714%2E1%7C.for.130730-131943.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.130730-131943.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.130730-131943.gi%7C284093075%7Cgb%7CEFC46714%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090726%7Cgb%7CEFC44376%2E1%7C.for.139599-140995.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.139599-140995.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.139599-140995.gi%7C284090726%7Cgb%7CEFC44376%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:28 now processing 0 total clusters:28 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:28 now processing 0 total clusters:28 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 total clusters:28 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 total clusters:25 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 total clusters:48 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:48 now processing 0 total clusters:48 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:34 now processing 0 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 total clusters:34 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.2386-3323.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.2386-3323.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.2386-3323.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.4485-6383.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.4485-6383.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.4485-6383.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.10364-11603.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.10364-11603.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.10364-11603.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.13401-14596.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.13401-14596.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.13401-14596.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.14972-16185.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.14972-16185.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.14972-16185.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.16376-18209.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.16376-18209.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.16376-18209.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.24975-26936.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.24975-26936.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.24975-26936.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.29677-30675.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.29677-30675.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.29677-30675.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.30959-31899.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.30959-31899.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.30959-31899.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.37033-43142.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.37033-43142.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.37033-43142.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.43430-44354.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.43430-44354.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.43430-44354.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.44431-46153.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.44431-46153.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.44431-46153.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.49726-51084.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.49726-51084.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.49726-51084.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.53724-54799.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.53724-54799.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.53724-54799.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.65858-68188.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.65858-68188.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.65858-68188.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.73071-73981.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.73071-73981.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.73071-73981.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.75107-78579.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.75107-78579.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.75107-78579.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.79887-81431.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.79887-81431.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.79887-81431.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.82420-83213.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.82420-83213.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.82420-83213.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.83308-86650.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.83308-86650.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.83308-86650.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.88601-90636.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.88601-90636.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.88601-90636.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.94042-95153.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.94042-95153.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.94042-95153.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.96704-97341.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.96704-97341.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.96704-97341.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.103144-104059.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.103144-104059.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.103144-104059.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.104997-105709.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.104997-105709.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.104997-105709.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.109946-111603.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.109946-111603.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.109946-111603.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.111961-114729.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.111961-114729.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.111961-114729.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.116362-117427.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.116362-117427.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.116362-117427.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.130710-132750.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.130710-132750.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.130710-132750.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.134159-136008.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.134159-136008.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.134159-136008.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.137661-141244.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.137661-141244.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.137661-141244.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.146931-148064.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.146931-148064.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.146931-148064.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.149294-151051.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.149294-151051.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.149294-151051.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.7226-9418.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.7226-9418.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.7226-9418.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.14321-15313.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.14321-15313.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.14321-15313.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.17914-20853.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.17914-20853.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.17914-20853.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.21355-22628.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.21355-22628.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.21355-22628.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.23480-24102.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.23480-24102.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.23480-24102.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.26561-29401.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.26561-29401.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.26561-29401.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.30377-31023.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.30377-31023.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.30377-31023.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/40_0.34142-36419.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/40_0.34142-36419.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/40_0.34142-36419.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/41_0.56529-59133.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/41_0.56529-59133.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/41_0.56529-59133.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/42_0.67815-70165.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/42_0.67815-70165.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/42_0.67815-70165.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/43_0.70338-72011.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/43_0.70338-72011.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/43_0.70338-72011.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/44_0.73731-74994.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/44_0.73731-74994.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/44_0.73731-74994.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/45_0.78575-79699.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/45_0.78575-79699.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/45_0.78575-79699.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/46_0.87346-88694.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/46_0.87346-88694.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/46_0.87346-88694.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/47_0.91308-92448.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/47_0.91308-92448.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/47_0.91308-92448.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/48_0.97683-99010.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/48_0.97683-99010.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/48_0.97683-99010.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/49_0.103986-105137.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/49_0.103986-105137.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/49_0.103986-105137.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/50_0.108244-109905.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/50_0.108244-109905.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/50_0.108244-109905.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/51_0.115948-116594.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/51_0.115948-116594.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/51_0.115948-116594.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/52_0.118285-119234.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/52_0.118285-119234.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/52_0.118285-119234.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/53_0.124122-129661.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/53_0.124122-129661.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/53_0.124122-129661.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/54_0.132987-134173.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/54_0.132987-134173.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/54_0.132987-134173.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/55_0.141626-144037.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/55_0.141626-144037.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/55_0.141626-144037.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/56_0.150698-152373.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/56_0.150698-152373.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/56_0.150698-152373.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C42 Length: 76433 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:1 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:3 current j:0 j_size:3 current j:1 j_size:3 current j:2 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C42.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C42.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:9 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:27 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:28 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:27 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:27 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:32 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:22 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:22 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:26 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:26 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7774%7C030702kazb008692ht.for.1-1406.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1-1406.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1-1406.Ar_EST_120301b_rep_c7774%7C030702kazb008692ht.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18851%7C---NA---.for.1-940.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1-940.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1-940.Ar_EST_120301b_c18851%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19024%7C---NA---.for.1-970.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1-970.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1-970.Ar_EST_120301b_c19024%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18770%7Cloc407698.for.1-1451.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1-1451.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1-1451.Ar_EST_120301b_rep_c18770%7Cloc407698.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4948%7Cmyosin.for.10321-12607.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.10321-12607.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.10321-12607.Ar_EST_120301b_rep_c4948%7Cmyosin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19625%7Cgtp-binding.for.8546-9603.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.8546-9603.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.8546-9603.Ar_EST_120301b_rep_c19625%7Cgtp-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5732%7Cm.for.9794-11275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.9794-11275.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.9794-11275.Ar_EST_120301b_rep_c5732%7Cm.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17320%7Cheavy.for.9960-11233.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.9960-11233.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.9960-11233.Ar_EST_120301b_rep_c17320%7Cheavy.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11257%7Cmyosin.for.8686-9748.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.8686-9748.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.8686-9748.Ar_EST_120301b_rep_c11257%7Cmyosin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14762%7Cmyosin.for.13210-14193.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.13210-14193.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.13210-14193.Ar_EST_120301b_c14762%7Cmyosin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig338%7Cmyosin.for.7890-13060.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.7890-13060.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.7890-13060.120301b_Contig338%7Cmyosin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20010%7Cpt030.for.10412-11566.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.10412-11566.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.10412-11566.Ar_EST_120301b_rep_c20010%7Cpt030.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13599%7Ceps15l1.for.8928-10003.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.8928-10003.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.8928-10003.Ar_EST_120301b_rep_c13599%7Ceps15l1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c280%7Ca.for.11708-14561.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.11708-14561.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.11708-14561.Ar_EST_120301b_c280%7Ca.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5072%7Cmyosin.for.7911-10427.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.7911-10427.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.7911-10427.Ar_EST_120301b_rep_c5072%7Cmyosin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9109%7Cinositol-pentakisphosphate.for.14767-16470.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.14767-16470.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.14767-16470.Ar_EST_120301b_c9109%7Cinositol-pentakisphosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2562%7Camino.for.16482-18275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.16482-18275.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.16482-18275.Ar_EST_120301b_c2562%7Camino.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2007%7Camino.for.15884-17370.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.15884-17370.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.15884-17370.Ar_EST_120301b_c2007%7Camino.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11326%7Chypothetical.for.16353-17413.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.16353-17413.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.16353-17413.Ar_EST_120301b_c11326%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12013%7Ccytochrome.for.19357-20363.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.19357-20363.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.19357-20363.Ar_EST_120301b_rep_c12013%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13656%7Crrp12-like.for.21547-22901.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.21547-22901.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.21547-22901.Ar_EST_120301b_c13656%7Crrp12-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8608%7Cnuc173-domain-containing.for.23818-25377.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.23818-25377.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.23818-25377.Ar_EST_120301b_c8608%7Cnuc173-domain-containing.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9977%7Crrp12-like.for.24622-26076.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.24622-26076.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.24622-26076.Ar_EST_120301b_c9977%7Crrp12-like.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15839%7Clucilia.for.27768-29114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.27768-29114.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.27768-29114.Ar_EST_120301b_c15839%7Clucilia.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig969%7Cstructural.for.33495-35407.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.33495-35407.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.33495-35407.120301b_Contig969%7Cstructural.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8672%7Ccondensin.for.34640-36040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.34640-36040.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.34640-36040.Ar_EST_120301b_c8672%7Ccondensin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11535%7Ce3.for.39167-40542.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.39167-40542.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.39167-40542.Ar_EST_120301b_c11535%7Ce3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13262%7Cunnamed.for.39805-41097.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.39805-41097.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.39805-41097.Ar_EST_120301b_c13262%7Cunnamed.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11312%7Cpoly%28adp-ribose%29.for.40444-41924.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.40444-41924.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.40444-41924.Ar_EST_120301b_c11312%7Cpoly%28adp-ribose%29.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19596%7Chypothetical.for.42045-43366.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42045-43366.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42045-43366.Ar_EST_120301b_c19596%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7308%7Cunnamed.for.42244-43364.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42244-43364.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42244-43364.Ar_EST_120301b_rep_c7308%7Cunnamed.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig325%7Cregulatory.for.42802-44973.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42802-44973.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42802-44973.120301b_Contig325%7Cregulatory.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11048%7C26s.for.42818-43974.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42818-43974.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42818-43974.Ar_EST_120301b_rep_c11048%7C26s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7492%7Cconserved.for.45877-46991.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45877-46991.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45877-46991.Ar_EST_120301b_rep_c7492%7Cconserved.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7479%7Cagn_rnc.for.45989-47063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45989-47063.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45989-47063.Ar_EST_120301b_rep_c7479%7Cagn_rnc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7508%7Cagn_rnc.for.45857-46841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45857-46841.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45857-46841.Ar_EST_120301b_rep_c7508%7Cagn_rnc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7480%7Cagn_rnc.for.46091-47455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46091-47455.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46091-47455.Ar_EST_120301b_rep_c7480%7Cagn_rnc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7509%7Cmucin.for.45434-46641.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45434-46641.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45434-46641.Ar_EST_120301b_rep_c7509%7Cmucin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig982%7Cras-related.for.45341-46536.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45341-46536.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45341-46536.120301b_Contig982%7Cras-related.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig343%7Cson.for.45134-47099.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45134-47099.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45134-47099.120301b_Contig343%7Cson.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5597%7Ccre-clec-202.for.45109-46960.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45109-46960.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45109-46960.Ar_EST_120301b_rep_c5597%7Ccre-clec-202.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7743%7Ccapg.for.45109-46400.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45109-46400.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45109-46400.Ar_EST_120301b_rep_c7743%7Ccapg.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7494%7Chypothetical.for.46415-47555.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46415-47555.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46415-47555.Ar_EST_120301b_rep_c7494%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16710%7Cascaris.for.46415-47537.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46415-47537.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46415-47537.Ar_EST_120301b_rep_c16710%7Cascaris.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19414%7Clusgc1ng-rp-234_a03_02apr2007_031.for.46639-47581.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46639-47581.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46639-47581.Ar_EST_120301b_rep_c19414%7Clusgc1ng-rp-234_a03_02apr2007_031.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7511%7C454.for.45483-46453.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45483-46453.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45483-46453.Ar_EST_120301b_rep_c7511%7C454.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6388%7Cglycoside.for.45638-46638.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45638-46638.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45638-46638.Ar_EST_120301b_rep_c6388%7Cglycoside.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19937%7Cseverin.for.45116-46100.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45116-46100.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45116-46100.Ar_EST_120301b_rep_c19937%7Cseverin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7495%7Cagn_rnc.for.46158-47433.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46158-47433.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46158-47433.Ar_EST_120301b_rep_c7495%7Cagn_rnc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7483%7C---NA---.for.46372-47433.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46372-47433.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46372-47433.Ar_EST_120301b_rep_c7483%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5806%7Cagn_rnc.for.45932-46941.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45932-46941.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45932-46941.Ar_EST_120301b_rep_c5806%7Cagn_rnc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7496%7Cc08024b04sk.for.45501-46672.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45501-46672.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45501-46672.Ar_EST_120301b_rep_c7496%7Cc08024b04sk.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16396%7Cglycoprotein.for.45482-46646.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45482-46646.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45482-46646.Ar_EST_120301b_rep_c16396%7Cglycoprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13573%7Cconserved.for.45147-46240.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45147-46240.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45147-46240.Ar_EST_120301b_rep_c13573%7Cconserved.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20339%7Cprotein.for.45144-46424.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45144-46424.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45144-46424.Ar_EST_120301b_rep_c20339%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig316%7Cpf11-1.for.45115-47057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45115-47057.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45115-47057.120301b_Contig316%7Cpf11-1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7487%7Cagn_rnc.for.46182-47595.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46182-47595.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46182-47595.Ar_EST_120301b_rep_c7487%7Cagn_rnc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6183%7Cpf11-1.for.45491-47522.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45491-47522.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45491-47522.Ar_EST_120301b_rep_c6183%7Cpf11-1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14545%7Chypothetical.for.45965-47068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45965-47068.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45965-47068.Ar_EST_120301b_rep_c14545%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1387%7Cpf11-1.for.45128-47072.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45128-47072.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45128-47072.120301b_Contig1387%7Cpf11-1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7470%7Cdc961434.for.45674-46577.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45674-46577.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45674-46577.Ar_EST_120301b_rep_c7470%7Cdc961434.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14022%7Chypothetical.for.46393-47555.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46393-47555.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46393-47555.Ar_EST_120301b_rep_c14022%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7500%7Cagn_rnc.for.45877-46957.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45877-46957.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45877-46957.Ar_EST_120301b_rep_c7500%7Cagn_rnc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7489%7Cagn_rnc.for.45655-46926.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45655-46926.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45655-46926.Ar_EST_120301b_rep_c7489%7Cagn_rnc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7476%7Cagn_rnc.for.46159-47569.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46159-47569.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46159-47569.Ar_EST_120301b_rep_c7476%7Cagn_rnc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7112%7Clikely.for.45218-47099.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45218-47099.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45218-47099.Ar_EST_120301b_rep_c7112%7Clikely.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7490%7Cpf11-1.for.45848-47172.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45848-47172.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45848-47172.Ar_EST_120301b_rep_c7490%7Cpf11-1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7505%7Cserine.for.45942-47187.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45942-47187.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45942-47187.Ar_EST_120301b_rep_c7505%7Cserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7044%7Cbw637335.for.45144-46373.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45144-46373.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45144-46373.Ar_EST_120301b_rep_c7044%7Cbw637335.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4836%7Cpf11-1.for.45128-47522.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45128-47522.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45128-47522.Ar_EST_120301b_rep_c4836%7Cpf11-1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6893%7Cpf11-1.for.45110-47063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45110-47063.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45110-47063.Ar_EST_120301b_rep_c6893%7Cpf11-1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17766%7C60s.for.45811-47072.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45811-47072.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45811-47072.Ar_EST_120301b_rep_c17766%7C60s.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4017%7Ccre-clec-202.for.45109-46943.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45109-46943.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45109-46943.Ar_EST_120301b_rep_c4017%7Ccre-clec-202.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7092%7Chypothetical.for.45110-46243.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45110-46243.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45110-46243.Ar_EST_120301b_rep_c7092%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20418%7Cdc981051.for.45137-46306.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45137-46306.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45137-46306.Ar_EST_120301b_rep_c20418%7Cdc981051.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4416%7Cmannose-1-phosphate.for.48178-50188.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.48178-50188.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.48178-50188.Ar_EST_120301b_rep_c4416%7Cmannose-1-phosphate.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10906%7Cset.for.49734-51197.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.49734-51197.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.49734-51197.Ar_EST_120301b_c10906%7Cset.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16929%7C---NA---.for.51104-52524.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.51104-52524.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.51104-52524.Ar_EST_120301b_c16929%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1490%7Cagencourt_54728430.for.51937-53332.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.51937-53332.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.51937-53332.Ar_EST_120301b_c1490%7Cagencourt_54728430.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c990%7Ccaau.for.53479-54807.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.53479-54807.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.53479-54807.Ar_EST_120301b_c990%7Ccaau.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1347%7C---NA---.for.53147-54553.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.53147-54553.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.53147-54553.120301b_Contig1347%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5238%7C---NA---.for.53147-54491.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.53147-54491.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.53147-54491.Ar_EST_120301b_rep_c5238%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1370%7Cubiquitin.for.53182-54304.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.53182-54304.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.53182-54304.120301b_Contig1370%7Cubiquitin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c572%7Cfra0980.for.54258-55665.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.54258-55665.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.54258-55665.Ar_EST_120301b_c572%7Cfra0980.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c824%7C---NA---.for.54999-56346.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.54999-56346.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.54999-56346.Ar_EST_120301b_c824%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14096%7Cprotein.for.59864-61124.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59864-61124.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59864-61124.Ar_EST_120301b_c14096%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16701%7Celongation.for.63503-64957.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.63503-64957.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.63503-64957.Ar_EST_120301b_c16701%7Celongation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14311%7Cmajor.for.65108-66195.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.65108-66195.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.65108-66195.Ar_EST_120301b_c14311%7Cmajor.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10866%7Cpiggybac.for.67346-69111.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.67346-69111.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.67346-69111.Ar_EST_120301b_c10866%7Cpiggybac.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8355%7Cpiggybac.for.67322-68937.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.67322-68937.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.67322-68937.Ar_EST_120301b_c8355%7Cpiggybac.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9544%7Cmlp2991.for.72162-73645.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.72162-73645.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.72162-73645.Ar_EST_120301b_c9544%7Cmlp2991.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10994%7Cct751907.for.75607-76433.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.75607-76433.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.75607-76433.Ar_EST_120301b_c10994%7Cct751907.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:33 now processing 0 total clusters:33 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:33 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 ...processing 0 of 22 ...processing 1 of 22 ...processing 2 of 22 ...processing 3 of 22 ...processing 4 of 22 ...processing 5 of 22 ...processing 6 of 22 ...processing 7 of 22 ...processing 8 of 22 ...processing 9 of 22 ...processing 10 of 22 ...processing 11 of 22 ...processing 12 of 22 ...processing 13 of 22 ...processing 14 of 22 ...processing 15 of 22 ...processing 16 of 22 ...processing 17 of 22 ...processing 18 of 22 ...processing 19 of 22 ...processing 20 of 22 ...processing 21 of 22 total clusters:33 now processing 0 total clusters:33 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 total clusters:33 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:22 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:11 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:15 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:20 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:24 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:20 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:26 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:15 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:12 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:14 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084885%7Cgb%7CEFC38573%2E1%7C.for.1773-3681.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1773-3681.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1773-3681.gi%7C284084885%7Cgb%7CEFC38573%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085553%7Cgb%7CEFC39236%2E1%7C.for.7920-14466.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.7920-14466.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.7920-14466.gi%7C284085553%7Cgb%7CEFC39236%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094451%7Cgb%7CEFC48085%2E1%7C.for.7932-14460.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.7932-14460.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.7932-14460.gi%7C284094451%7Cgb%7CEFC48085%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084972%7Cgb%7CEFC38659%2E1%7C.for.16062-18301.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.16062-18301.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.16062-18301.gi%7C284084972%7Cgb%7CEFC38659%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089951%7Cgb%7CEFC43605%2E1%7C.for.16209-18235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.16209-18235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.16209-18235.gi%7C284089951%7Cgb%7CEFC43605%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096115%7Cgb%7CEFC49744%2E1%7C.for.17570-19460.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.17570-19460.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.17570-19460.gi%7C284096115%7Cgb%7CEFC49744%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096480%7Cgb%7CEFC50108%2E1%7C.for.19232-20352.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.19232-20352.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.19232-20352.gi%7C284096480%7Cgb%7CEFC50108%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096114%7Cgb%7CEFC49743%2E1%7C.for.31950-36420.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.31950-36420.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.31950-36420.gi%7C284096114%7Cgb%7CEFC49743%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084943%7Cgb%7CEFC38631%2E1%7C.for.31962-36417.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.31962-36417.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.31962-36417.gi%7C284084943%7Cgb%7CEFC38631%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091903%7Cgb%7CEFC45547%2E1%7C.for.37513-38519.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.37513-38519.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.37513-38519.gi%7C284091903%7Cgb%7CEFC45547%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096119%7Cgb%7CEFC49748%2E1%7C.for.40644-42565.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.40644-42565.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.40644-42565.gi%7C284096119%7Cgb%7CEFC49748%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092250%7Cgb%7CEFC45893%2E1%7C.for.43363-44942.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43363-44942.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43363-44942.gi%7C284092250%7Cgb%7CEFC45893%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082802%7Cgb%7CEFC36513%2E1%7C.for.43363-44861.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43363-44861.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43363-44861.gi%7C284082802%7Cgb%7CEFC36513%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083285%7Cgb%7CEFC36990%2E1%7C.for.43231-44915.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43231-44915.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43231-44915.gi%7C284083285%7Cgb%7CEFC36990%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086815%7Cgb%7CEFC40489%2E1%7C.for.42949-44954.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42949-44954.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42949-44954.gi%7C284086815%7Cgb%7CEFC40489%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095107%7Cgb%7CEFC48739%2E1%7C.for.43381-44933.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43381-44933.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43381-44933.gi%7C284095107%7Cgb%7CEFC48739%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092145%7Cgb%7CEFC45788%2E1%7C.for.43324-44894.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43324-44894.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43324-44894.gi%7C284092145%7Cgb%7CEFC45788%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086643%7Cgb%7CEFC40318%2E1%7C.for.43342-44903.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43342-44903.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43342-44903.gi%7C284086643%7Cgb%7CEFC40318%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090736%7Cgb%7CEFC44386%2E1%7C.for.43339-44951.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43339-44951.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43339-44951.gi%7C284090736%7Cgb%7CEFC44386%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089920%7Cgb%7CEFC43575%2E1%7C.for.43186-44918.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43186-44918.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43186-44918.gi%7C284089920%7Cgb%7CEFC43575%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089547%7Cgb%7CEFC43204%2E1%7C.for.43201-44921.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43201-44921.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43201-44921.gi%7C284089547%7Cgb%7CEFC43204%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084479%7Cgb%7CEFC38171%2E1%7C.for.48200-50161.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.48200-50161.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.48200-50161.gi%7C284084479%7Cgb%7CEFC38171%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097121%7Cgb%7CEFC50748%2E1%7C.for.48200-50161.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.48200-50161.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.48200-50161.gi%7C284097121%7Cgb%7CEFC50748%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095513%7Cgb%7CEFC49143%2E1%7C.for.59486-60759.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59486-60759.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59486-60759.gi%7C284095513%7Cgb%7CEFC49143%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091174%7Cgb%7CEFC44822%2E1%7C.for.59498-60747.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59498-60747.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59498-60747.gi%7C284091174%7Cgb%7CEFC44822%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096632%7Cgb%7CEFC50259%2E1%7C.for.59504-60747.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59504-60747.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59504-60747.gi%7C284096632%7Cgb%7CEFC50259%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096631%7Cgb%7CEFC50258%2E1%7C.for.56274-60438.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.56274-60438.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.56274-60438.gi%7C284096631%7Cgb%7CEFC50258%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091239%7Cgb%7CEFC44887%2E1%7C.for.59486-60744.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59486-60744.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59486-60744.gi%7C284091239%7Cgb%7CEFC44887%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087686%7Cgb%7CEFC41354%2E1%7C.for.56064-60891.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.56064-60891.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.56064-60891.gi%7C284087686%7Cgb%7CEFC41354%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089822%7Cgb%7CEFC43477%2E1%7C.for.62094-65123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.62094-65123.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.62094-65123.gi%7C284089822%7Cgb%7CEFC43477%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082936%7Cgb%7CEFC36645%2E1%7C.for.64707-66232.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.64707-66232.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.64707-66232.gi%7C284082936%7Cgb%7CEFC36645%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:11 now processing 0 total clusters:11 now processing 0 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 total clusters:11 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:9 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:18 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:18 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:16 now processing 0 total clusters:16 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 ...processing 0 of 2 ...processing 1 of 2 total clusters:16 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 ...processing 0 of 19 ...processing 1 of 19 ...processing 2 of 19 ...processing 3 of 19 ...processing 4 of 19 ...processing 5 of 19 ...processing 6 of 19 ...processing 7 of 19 ...processing 8 of 19 ...processing 9 of 19 ...processing 10 of 19 ...processing 11 of 19 ...processing 12 of 19 ...processing 13 of 19 ...processing 14 of 19 ...processing 15 of 19 ...processing 16 of 19 ...processing 17 of 19 ...processing 18 of 19 total clusters:16 now processing 0 total clusters:16 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 total clusters:16 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.274-1263.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.274-1263.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.274-1263.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.8848-9548.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.8848-9548.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.8848-9548.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.14966-16270.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.14966-16270.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.14966-16270.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.21746-22701.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.21746-22701.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.21746-22701.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.24017-25876.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.24017-25876.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.24017-25876.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.32149-36220.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.32149-36220.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.32149-36220.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.39366-40342.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.39366-40342.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.39366-40342.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.43001-44777.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.43001-44777.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.43001-44777.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.45867-47168.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.45867-47168.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.45867-47168.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.48367-49988.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.48367-49988.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.48367-49988.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.51249-53132.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.51249-53132.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.51249-53132.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.56263-60924.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.56263-60924.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.56263-60924.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.67521-68911.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.67521-68911.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.67521-68911.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.72361-73478.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.72361-73478.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.72361-73478.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.90-631.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.90-631.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.90-631.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.8089-14361.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.8089-14361.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.8089-14361.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.16083-19260.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.16083-19260.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.16083-19260.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.19431-20152.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.19431-20152.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.19431-20152.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.27967-28914.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.27967-28914.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.27967-28914.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.40004-43176.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.40004-43176.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.40004-43176.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.45295-47426.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.45295-47426.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.45295-47426.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.49931-50997.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.49931-50997.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.49931-50997.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.53346-56146.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.53346-56146.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.53346-56146.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.62293-66032.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.62293-66032.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.62293-66032.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C43 Length: 92164 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... sorting hits in shadow cluster... j_size:2 current j:0 j_size:2 current j:1 ...finished clustering. preparing masked sequence preparing ab-inits running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C43.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C43.abinit_masked.0.run0%2Ehmm.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done scoring....decoding.10.20.30.40.50.60.70.80.90.100 done gathering ab-init output files deleted:0 genes doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:5 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17092%7Cfp188883.for.3526-4473.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.3526-4473.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.3526-4473.Ar_EST_120301b_c17092%7Cfp188883.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13677%7Cccab.for.5252-6612.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.5252-6612.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.5252-6612.Ar_EST_120301b_c13677%7Cccab.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14518%7Cct749901.for.7990-9313.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.7990-9313.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.7990-9313.Ar_EST_120301b_c14518%7Cct749901.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9288%7Cam569745.for.7381-8837.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.7381-8837.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.7381-8837.Ar_EST_120301b_c9288%7Cam569745.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4141%7Cand.for.9566-11196.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.9566-11196.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.9566-11196.Ar_EST_120301b_rep_c4141%7Cand.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6063%7Cand.for.9750-11028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.9750-11028.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.9750-11028.Ar_EST_120301b_rep_c6063%7Cand.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15157%7Cfs534783.for.12578-13795.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.12578-13795.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.12578-13795.Ar_EST_120301b_c15157%7Cfs534783.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17200%7Ctetratricopeptide.for.13047-14232.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.13047-14232.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.13047-14232.Ar_EST_120301b_c17200%7Ctetratricopeptide.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13584%7Cpinus.for.14744-15962.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.14744-15962.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.14744-15962.Ar_EST_120301b_c13584%7Cpinus.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3070%7C---NA---.for.14732-16014.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.14732-16014.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.14732-16014.Ar_EST_120301b_c3070%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9766%7Cperoxiredoxin.for.17496-18964.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.17496-18964.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.17496-18964.Ar_EST_120301b_c9766%7Cperoxiredoxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10584%7Ccytochrome.for.18605-19915.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.18605-19915.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.18605-19915.Ar_EST_120301b_c10584%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig463%7Calcohol.for.19343-21211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.19343-21211.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.19343-21211.120301b_Contig463%7Calcohol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4099%7Calcohol.for.19322-21212.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.19322-21212.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.19322-21212.Ar_EST_120301b_rep_c4099%7Calcohol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18166%7Ccopper.for.23025-24216.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.23025-24216.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.23025-24216.Ar_EST_120301b_c18166%7Ccopper.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9326%7Cabc.for.25002-26391.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.25002-26391.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.25002-26391.Ar_EST_120301b_c9326%7Cabc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12338%7Cabc.for.26196-27884.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26196-27884.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26196-27884.Ar_EST_120301b_c12338%7Cabc.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7977%7Cprotein.for.28339-30585.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.28339-30585.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.28339-30585.Ar_EST_120301b_c7977%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13552%7Ccytochrome.for.30161-31786.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.30161-31786.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.30161-31786.Ar_EST_120301b_c13552%7Ccytochrome.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1677%7Crhogef.for.33450-34814.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.33450-34814.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.33450-34814.Ar_EST_120301b_c1677%7Crhogef.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20340%7Cmembrane.for.32541-33655.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.32541-33655.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.32541-33655.Ar_EST_120301b_rep_c20340%7Cmembrane.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1340%7Crhogef.for.31943-34641.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.31943-34641.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.31943-34641.120301b_Contig1340%7Crhogef.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3406%7Cnucleoside-diphosphate-sugar.for.35037-36828.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.35037-36828.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.35037-36828.Ar_EST_120301b_c3406%7Cnucleoside-diphosphate-sugar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8532%7Cau287079.for.37076-38097.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.37076-38097.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.37076-38097.Ar_EST_120301b_c8532%7Cau287079.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12209%7Cacetyl-.for.38502-39630.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.38502-39630.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.38502-39630.Ar_EST_120301b_c12209%7Cacetyl-.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18018%7C---NA---.for.39325-40402.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.39325-40402.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.39325-40402.Ar_EST_120301b_c18018%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12991%7Calpha-tubulin.for.40091-41311.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.40091-41311.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.40091-41311.Ar_EST_120301b_rep_c12991%7Calpha-tubulin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17425%7Crapamycin.for.44284-45658.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.44284-45658.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.44284-45658.Ar_EST_120301b_rep_c17425%7Crapamycin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16058%7Cserine.for.45035-46459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.45035-46459.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.45035-46459.Ar_EST_120301b_c16058%7Cserine.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2918%7Cphosphatidylinositol.for.46079-47673.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.46079-47673.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.46079-47673.Ar_EST_120301b_c2918%7Cphosphatidylinositol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18515%7Cprotein.for.47799-49079.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.47799-49079.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.47799-49079.Ar_EST_120301b_c18515%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12339%7Cphosphatidylinositol.for.48446-49831.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.48446-49831.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.48446-49831.Ar_EST_120301b_c12339%7Cphosphatidylinositol.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10083%7Ctor.for.50097-52131.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.50097-52131.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.50097-52131.Ar_EST_120301b_c10083%7Ctor.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17125%7Cfk506.for.51445-52972.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.51445-52972.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.51445-52972.Ar_EST_120301b_c17125%7Cfk506.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c609%7Ctranslation.for.55264-57136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.55264-57136.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.55264-57136.Ar_EST_120301b_c609%7Ctranslation.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16114%7Cpentein-type.for.56590-57910.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.56590-57910.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.56590-57910.Ar_EST_120301b_c16114%7Cpentein-type.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15590%7Cggdef.for.59052-60296.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.59052-60296.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.59052-60296.Ar_EST_120301b_c15590%7Cggdef.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11620%7Chypothetical.for.59484-60929.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.59484-60929.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.59484-60929.Ar_EST_120301b_c11620%7Chypothetical.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16515%7C---NA---.for.60825-62078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.60825-62078.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.60825-62078.Ar_EST_120301b_c16515%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4560%7Cmember.for.62938-64381.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.62938-64381.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.62938-64381.Ar_EST_120301b_rep_c4560%7Cmember.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20266%7Cdrug.for.61501-63752.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.61501-63752.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.61501-63752.Ar_EST_120301b_c20266%7Cdrug.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5804%7Cbeta-arrestin.for.64403-66155.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.64403-66155.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.64403-66155.Ar_EST_120301b_rep_c5804%7Cbeta-arrestin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6687%7Cpredicted.for.64370-65546.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.64370-65546.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.64370-65546.Ar_EST_120301b_rep_c6687%7Cpredicted.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4372%7Cbeta-arrestin.for.64168-66155.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.64168-66155.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.64168-66155.Ar_EST_120301b_rep_c4372%7Cbeta-arrestin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13910%7C---NA---.for.64304-65220.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.64304-65220.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.64304-65220.Ar_EST_120301b_rep_c13910%7C---NA---.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2549%7Cthioredoxin.for.66566-68310.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.66566-68310.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.66566-68310.Ar_EST_120301b_c2549%7Cthioredoxin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15315%7Crna-binding.for.67791-68961.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.67791-68961.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.67791-68961.Ar_EST_120301b_c15315%7Crna-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2976%7Crna-binding.for.68438-70469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.68438-70469.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.68438-70469.Ar_EST_120301b_c2976%7Crna-binding.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3634%7Czz-type.for.70147-71611.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.70147-71611.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.70147-71611.Ar_EST_120301b_c3634%7Czz-type.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2887%7Cubiquitin-associated.for.70584-72038.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.70584-72038.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.70584-72038.Ar_EST_120301b_c2887%7Cubiquitin-associated.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig323%7Ctubulin.for.73278-75377.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73278-75377.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73278-75377.120301b_Contig323%7Ctubulin.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15599%7Cpopulus.for.74929-76348.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.74929-76348.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.74929-76348.Ar_EST_120301b_c15599%7Cpopulus.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7031%7Cheat.for.76336-77895.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.76336-77895.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.76336-77895.Ar_EST_120301b_rep_c7031%7Cheat.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16987%7Cflagellar.for.77326-78609.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.77326-78609.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.77326-78609.Ar_EST_120301b_c16987%7Cflagellar.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9635%7Cgdp-man%3Aman.for.79655-81480.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.79655-81480.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.79655-81480.Ar_EST_120301b_c9635%7Cgdp-man%3Aman.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19551%7Caspargine-linked.for.80083-81464.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.80083-81464.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.80083-81464.Ar_EST_120301b_c19551%7Caspargine-linked.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1696%7Ctrna.for.81261-82761.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.81261-82761.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.81261-82761.Ar_EST_120301b_c1696%7Ctrna.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7744%7Cprotein.for.81867-83835.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.81867-83835.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.81867-83835.Ar_EST_120301b_c7744%7Cprotein.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18655%7Cmethyltransferase.for.82807-84315.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.82807-84315.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.82807-84315.Ar_EST_120301b_c18655%7Cmethyltransferase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19904%7Cmethyltransferase.for.82712-84249.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.82712-84249.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.82712-84249.Ar_EST_120301b_c19904%7Cmethyltransferase.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig233%7Cphospholipase.for.86209-88251.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.86209-88251.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.86209-88251.120301b_Contig233%7Cphospholipase.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 total clusters:40 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:40 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:40 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:38 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:38 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:38 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:30 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:49 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:38 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:31 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:40 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:41 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:36 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097056%7Cgb%7CEFC50683%2E1%7C.for.9746-11154.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.9746-11154.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.9746-11154.gi%7C284097056%7Cgb%7CEFC50683%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090825%7Cgb%7CEFC44475%2E1%7C.for.21982-23057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.21982-23057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.21982-23057.gi%7C284090825%7Cgb%7CEFC44475%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084884%7Cgb%7CEFC38572%2E1%7C.for.25245-27535.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.25245-27535.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.25245-27535.gi%7C284084884%7Cgb%7CEFC38572%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090115%7Cgb%7CEFC43768%2E1%7C.for.25005-27712.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.25005-27712.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.25005-27712.gi%7C284090115%7Cgb%7CEFC43768%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085735%7Cgb%7CEFC39417%2E1%7C.for.24999-27664.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.24999-27664.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.24999-27664.gi%7C284085735%7Cgb%7CEFC39417%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096910%7Cgb%7CEFC50537%2E1%7C.for.26056-27625.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26056-27625.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26056-27625.gi%7C284096910%7Cgb%7CEFC50537%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096078%7Cgb%7CEFC49707%2E1%7C.for.26047-27437.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26047-27437.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26047-27437.gi%7C284096078%7Cgb%7CEFC49707%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094270%7Cgb%7CEFC47905%2E1%7C.for.26059-27559.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26059-27559.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26059-27559.gi%7C284094270%7Cgb%7CEFC47905%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083704%7Cgb%7CEFC37404%2E1%7C.for.24999-27673.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.24999-27673.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.24999-27673.gi%7C284083704%7Cgb%7CEFC37404%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094259%7Cgb%7CEFC47894%2E1%7C.for.24999-27682.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.24999-27682.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.24999-27682.gi%7C284094259%7Cgb%7CEFC47894%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094721%7Cgb%7CEFC48354%2E1%7C.for.26065-27559.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26065-27559.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26065-27559.gi%7C284094721%7Cgb%7CEFC48354%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082506%7Cgb%7CEFC36223%2E1%7C.for.28324-29819.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.28324-29819.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.28324-29819.gi%7C284082506%7Cgb%7CEFC36223%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089855%7Cgb%7CEFC43510%2E1%7C.for.28264-30386.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.28264-30386.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.28264-30386.gi%7C284089855%7Cgb%7CEFC43510%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081402%7Cgb%7CEFC35430%2E1%7C.for.42347-43347.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.42347-43347.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.42347-43347.gi%7C284081402%7Cgb%7CEFC35430%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096798%7Cgb%7CEFC50425%2E1%7C.for.43208-44964.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.43208-44964.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.43208-44964.gi%7C284096798%7Cgb%7CEFC50425%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088248%7Cgb%7CEFC41913%2E1%7C.for.44214-52634.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.44214-52634.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.44214-52634.gi%7C284088248%7Cgb%7CEFC41913%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084309%7Cgb%7CEFC38003%2E1%7C.for.55818-57080.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.55818-57080.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.55818-57080.gi%7C284084309%7Cgb%7CEFC38003%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084448%7Cgb%7CEFC38141%2E1%7C.for.55818-57092.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.55818-57092.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.55818-57092.gi%7C284084448%7Cgb%7CEFC38141%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092108%7Cgb%7CEFC45751%2E1%7C.for.56577-58330.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.56577-58330.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.56577-58330.gi%7C284092108%7Cgb%7CEFC45751%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088691%7Cgb%7CEFC42353%2E1%7C.for.57943-58856.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.57943-58856.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.57943-58856.gi%7C284088691%7Cgb%7CEFC42353%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091203%7Cgb%7CEFC44851%2E1%7C.for.61596-63641.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.61596-63641.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.61596-63641.gi%7C284091203%7Cgb%7CEFC44851%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083474%7Cgb%7CEFC37177%2E1%7C.for.61605-63584.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.61605-63584.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.61605-63584.gi%7C284083474%7Cgb%7CEFC37177%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083969%7Cgb%7CEFC37667%2E1%7C.for.61889-63587.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.61889-63587.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.61889-63587.gi%7C284083969%7Cgb%7CEFC37667%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096866%7Cgb%7CEFC50493%2E1%7C.for.63133-64462.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63133-64462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63133-64462.gi%7C284096866%7Cgb%7CEFC50493%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093204%7Cgb%7CEFC46843%2E1%7C.for.63169-64438.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63169-64438.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63169-64438.gi%7C284093204%7Cgb%7CEFC46843%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095151%7Cgb%7CEFC48783%2E1%7C.for.63118-64262.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63118-64262.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63118-64262.gi%7C284095151%7Cgb%7CEFC48783%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095231%7Cgb%7CEFC48862%2E1%7C.for.62968-64462.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.62968-64462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.62968-64462.gi%7C284095231%7Cgb%7CEFC48862%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095060%7Cgb%7CEFC48692%2E1%7C.for.63139-64462.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63139-64462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63139-64462.gi%7C284095060%7Cgb%7CEFC48692%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085175%7Cgb%7CEFC38861%2E1%7C.for.63148-64262.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63148-64262.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63148-64262.gi%7C284085175%7Cgb%7CEFC38861%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081592%7Cgb%7CEFC35538%2E1%7C.for.63118-64214.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63118-64214.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63118-64214.gi%7C284081592%7Cgb%7CEFC35538%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087063%7Cgb%7CEFC40735%2E1%7C.for.63145-64462.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63145-64462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63145-64462.gi%7C284087063%7Cgb%7CEFC40735%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089507%7Cgb%7CEFC43164%2E1%7C.for.63169-64262.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63169-64262.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63169-64262.gi%7C284089507%7Cgb%7CEFC43164%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092547%7Cgb%7CEFC46189%2E1%7C.for.67167-68206.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.67167-68206.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.67167-68206.gi%7C284092547%7Cgb%7CEFC46189%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093081%7Cgb%7CEFC46720%2E1%7C.for.70141-71237.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.70141-71237.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.70141-71237.gi%7C284093081%7Cgb%7CEFC46720%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091177%7Cgb%7CEFC44825%2E1%7C.for.70081-72452.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.70081-72452.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.70081-72452.gi%7C284091177%7Cgb%7CEFC44825%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096878%7Cgb%7CEFC50505%2E1%7C.for.72364-73424.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.72364-73424.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.72364-73424.gi%7C284096878%7Cgb%7CEFC50505%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C464854%7Csp%7CP34108%2E1%7CTBB_NAEGR.for.73326-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.gi%7C464854%7Csp%7CP34108%2E1%7CTBB_NAEGR.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086940%7Cgb%7CEFC40613%2E1%7C.for.73335-75325.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73335-75325.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73335-75325.gi%7C284086940%7Cgb%7CEFC40613%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C9737%7Cemb%7CCAA78362%2E1%7C.for.73326-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.gi%7C9737%7Cemb%7CCAA78362%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086828%7Cgb%7CEFC40502%2E1%7C.for.73287-74890.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73287-74890.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73287-74890.gi%7C284086828%7Cgb%7CEFC40502%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082800%7Cgb%7CEFC36511%2E1%7C.for.73326-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.gi%7C284082800%7Cgb%7CEFC36511%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086082%7Cgb%7CEFC39761%2E1%7C.for.73326-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.gi%7C284086082%7Cgb%7CEFC39761%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091464%7Cgb%7CEFC45110%2E1%7C.for.73278-75409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73278-75409.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73278-75409.gi%7C284091464%7Cgb%7CEFC45110%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084286%7Cgb%7CEFC37980%2E1%7C.for.73347-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73347-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73347-75412.gi%7C284084286%7Cgb%7CEFC37980%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C15082214%7Cgb%7CAAK84066%2E1%7CAF401641_1.for.74148-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.74148-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.74148-75412.gi%7C15082214%7Cgb%7CAAK84066%2E1%7CAF401641_1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C829213%7Cemb%7CCAA56940%2E1%7C.for.73326-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.gi%7C829213%7Cemb%7CCAA56940%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083707%7Cgb%7CEFC37407%2E1%7C.for.73320-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73320-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73320-75412.gi%7C284083707%7Cgb%7CEFC37407%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083068%7Cgb%7CEFC36775%2E1%7C.for.73326-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.gi%7C284083068%7Cgb%7CEFC36775%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084695%7Cgb%7CEFC38385%2E1%7C.for.73320-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73320-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73320-75412.gi%7C284084695%7Cgb%7CEFC38385%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094548%7Cgb%7CEFC48182%2E1%7C.for.77239-78596.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.77239-78596.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.77239-78596.gi%7C284094548%7Cgb%7CEFC48182%2E1%7C.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094208%7Cgb%7CEFC47843%2E1%7C.for.79553-81709.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.79553-81709.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.79553-81709.gi%7C284094208%7Cgb%7CEFC47843%2E1%7C.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:14 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:14 now processing 0 total clusters:14 now processing 0 total clusters:14 now processing 0 ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:14 now processing 0 total clusters:14 now processing 0 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 9 ...processing 1 of 9 ...processing 2 of 9 ...processing 3 of 9 ...processing 4 of 9 ...processing 5 of 9 ...processing 6 of 9 ...processing 7 of 9 ...processing 8 of 9 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:12 now processing 0 total clusters:12 now processing 0 ...processing 0 of 13 ...processing 1 of 13 ...processing 2 of 13 ...processing 3 of 13 ...processing 4 of 13 ...processing 5 of 13 ...processing 6 of 13 ...processing 7 of 13 ...processing 8 of 13 ...processing 9 of 13 ...processing 10 of 13 ...processing 11 of 13 ...processing 12 of 13 total clusters:12 now processing 0 flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 total clusters:9 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:9 now processing 0 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 ...processing 0 of 2 ...processing 1 of 2 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:27 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:27 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:27 now processing 0 total clusters:27 now processing 0 total clusters:27 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:27 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 total clusters:27 now processing 0 in cluster::shadow_cluster... ...finished clustering. annotating transcripts Making transcripts running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.7580-9113.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.7580-9113.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.7580-9113.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.17695-18764.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.17695-18764.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.17695-18764.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.35236-36628.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.35236-36628.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.35236-36628.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.40264-41111.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.40264-41111.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.40264-41111.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.43407-44764.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.43407-44764.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.43407-44764.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.56776-58130.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.56776-58130.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.56776-58130.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.61024-63552.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.61024-63552.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.61024-63552.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.70280-72252.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.70280-72252.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.70280-72252.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.3725-4273.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.3725-4273.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.3725-4273.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.5451-6412.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.5451-6412.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.5451-6412.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.9846-10954.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.9846-10954.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.9846-10954.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.12777-14032.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.12777-14032.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.12777-14032.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.14931-15844.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.14931-15844.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.14931-15844.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.18804-21022.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.18804-21022.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.18804-21022.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.23224-24016.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.23224-24016.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.23224-24016.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.25198-27684.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.25198-27684.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.25198-27684.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.28463-31586.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.28463-31586.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.28463-31586.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.32142-34623.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.32142-34623.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.32142-34623.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.44413-52772.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.44413-52772.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.44413-52772.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.59251-60729.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.59251-60729.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.59251-60729.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.63132-64321.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.63132-64321.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.63132-64321.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.64367-65955.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.64367-65955.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.64367-65955.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.66765-70269.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.66765-70269.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.66765-70269.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.72563-73227.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.72563-73227.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.72563-73227.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding10.20.30.40.50.60.70.80.90100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.73477-76148.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.73477-76148.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.73477-76148.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.77438-78411.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.77438-78411.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.77438-78411.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.79752-84119.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.79752-84119.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.79752-84119.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes running snap. #--------- command -------------# Widget::snap: /pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.86408-88051.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.86408-88051.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.86408-88051.run0.hmm.auto_annotator.snap #-------------------------------# scoring....decoding.10.20.30.40.50.60.70.80.90.100 done deleted:0 genes clustering transcripts into genes for annotations Processing transcripts into genes choosing best annotation set Choosing best annotations processing chunk output processing contig output Maker is now finished!!! [saneash at milou2 re-run0]$ From carsonhh at gmail.com Fri Jan 17 10:55:38 2014 From: carsonhh at gmail.com (Carson Holt) Date: Fri, 17 Jan 2014 10:55:38 -0700 Subject: [maker-devel] Problem with re-annotation In-Reply-To: References: Message-ID: Could you send me these two files. I put the full path below based on your STDERR report. Also this log was from the original run having the issue, and not a new repeated attempt at that one, correct? First file ?> /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_re dundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_1 30708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1/theVoid.AR_HYBRID_130 113_TINTIN_EF2ON_C1/AR_HYBRID_130113_TINTIN_EF2ON_C1.abinit_masked.0.run0%2E hmm.snap Second file ?> /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_re dundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_1 30708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1/AR_HYBRID_130113_TINT IN_EF2ON_C1.gff Thanks, Carson From: Sanea Sheikh Date: Thursday, January 16, 2014 at 3:52 AM To: , Carson Holt Subject: Fwd: [maker-devel] Problem with re-annotation Hello Carson Here it is. Sanea On Tue, Jan 14, 2014 at 1:39 AM, Carson Holt wrote: > Hi Sanea, > > There are no snap calls in your results. It?s as if SNAP never even ran. Did > you capture STDERR from your second run? If so can you send it to me. I just > want to see if it even shows SNAP as having run in the progress reports. > > Thanks, > Carson > > From: Sanea Sheikh > Date: Monday, January 13, 2014 at 2:17 AM > To: > Subject: [maker-devel] Problem with re-annotation > > Hello > > I am using Maker to annotate a genome for which I only have EST data and some > protein data. I ran Maker once using this EST and protein data (est2genome=1, > protein2genome=1). I had the Maker output. I combined all the GFF files for > all the contigs. I used the combined GFF file to train SNAP which gave me a > .hmm file. Now I modified the Maker opts control file. I provided the hmm file > in snap_hmm. I set est2genome=0 and protein2genome=0. I ran Maker again > assuming that now I have trained the gene predictor and I would have better > annotations. But now the output file that I get does not have Maker > annotation. I have attached the control files and the output file for the > re-run so you can have a look and let me know what I am doing wrong in order > to re-annotate the genome using the output from the previous run. > > Sanea > _______________________________________________ maker-devel mailing list > maker-devel at box290.bluehost.comhttp://box290.bluehost.com/mailman/listinfo/mak > er-devel_yandell-lab.org -------------- next part -------------- An HTML attachment was scrubbed... URL: From carsonhh at gmail.com Fri Jan 17 14:34:44 2014 From: carsonhh at gmail.com (Carson Holt) Date: Fri, 17 Jan 2014 14:34:44 -0700 Subject: [maker-devel] Problem with re-annotation In-Reply-To: References: Message-ID: The snap reports are empty, as if SNAP is never calling any genes even though it runs. Could you try running with a different HMM bundled with SNAP? Even though it?s not the right species, I just want to see if it will produce output under different circumstances. ?Carson From: Sanea Sheikh Date: Friday, January 17, 2014 at 12:21 PM To: Carson Holt Cc: Subject: Re: [maker-devel] Problem with re-annotation Hi Here are the two files that you asked for. The log was from a repeated attempt but the same issue was still there. I have attached the output from the repeated attempt as well so you can have a look at that. Sanea On Fri, Jan 17, 2014 at 6:55 PM, Carson Holt wrote: > Could you send me these two files. I put the full path below based on your > STDERR report. Also this log was from the original run having the issue, and > not a new repeated attempt at that one, correct? > > > First file ?> > /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redu > ndant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_13070 > 8_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1/theVoid.AR_HYBRID_130113_TI > NTIN_EF2ON_C1/AR_HYBRID_130113_TINTIN_EF2ON_C1.abinit_masked.0.run0%2Ehmm.snap > > > Second file ?> > /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redu > ndant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_13070 > 8_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1/AR_HYBRID_130113_TINTIN_EF2 > ON_C1.gff > > > Thanks, > Carson > > > From: Sanea Sheikh > Date: Thursday, January 16, 2014 at 3:52 AM > To: , Carson Holt > Subject: Fwd: [maker-devel] Problem with re-annotation > > Hello Carson > Here it is. > Sanea > > On Tue, Jan 14, 2014 at 1:39 AM, Carson Holt wrote: >> Hi Sanea, >> >> There are no snap calls in your results. It?s as if SNAP never even ran. >> Did you capture STDERR from your second run? If so can you send it to me. I >> just want to see if it even shows SNAP as having run in the progress reports. >> >> Thanks, >> Carson >> >> From: Sanea Sheikh >> Date: Monday, January 13, 2014 at 2:17 AM >> To: >> Subject: [maker-devel] Problem with re-annotation >> >> Hello >> >> I am using Maker to annotate a genome for which I only have EST data and some >> protein data. I ran Maker once using this EST and protein data (est2genome=1, >> protein2genome=1). I had the Maker output. I combined all the GFF files for >> all the contigs. I used the combined GFF file to train SNAP which gave me a >> .hmm file. Now I modified the Maker opts control file. I provided the hmm >> file in snap_hmm. I set est2genome=0 and protein2genome=0. I ran Maker again >> assuming that now I have trained the gene predictor and I would have better >> annotations. But now the output file that I get does not have Maker >> annotation. I have attached the control files and the output file for the >> re-run so you can have a look and let me know what I am doing wrong in order >> to re-annotate the genome using the output from the previous run. >> >> Sanea >> _______________________________________________ maker-devel mailing list >> maker-devel at box290.bluehost.comhttp://box290.bluehost.com/mailman/listinfo/ma >> ker-devel_yandell-lab.org > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From mike.thon at gmail.com Fri Jan 17 22:27:07 2014 From: mike.thon at gmail.com (Michael Thon) Date: Sat, 18 Jan 2014 06:27:07 +0100 Subject: [maker-devel] another maker re-annotation question Message-ID: <4BC8D8CA-A150-415D-9985-A2F5E758FDA9@gmail.com> We would like to re-run maker, keeping our locus IDs from a previous run, if possible. We added the old maker annotation in maker_gff and set everything else in the re-annotation section to 0. We also set map_forward=1. The output has gene annotations but the locus IDs were not transferred. I did some searching in the mailing list and it seems that our old annotation should be in model_gff. In that case do we need to strip out all the non-gene model features (match_part, etc) or can we leave it as is? Mike From dence at genetics.utah.edu Fri Jan 17 23:47:02 2014 From: dence at genetics.utah.edu (Daniel Ence) Date: Sat, 18 Jan 2014 06:47:02 +0000 Subject: [maker-devel] another maker re-annotation question In-Reply-To: <4BC8D8CA-A150-415D-9985-A2F5E758FDA9@gmail.com> References: <4BC8D8CA-A150-415D-9985-A2F5E758FDA9@gmail.com> Message-ID: Hi Mike, I am pretty sure that you need to strip out everything else. Just keep the "gene", "transcript" and "exon" features. Thanks, Daniel Daniel Ence Graduate Student Eccles Institute of Human Genetics University of Utah 15 North 2030 East, Room 2100 Salt Lake City, UT 84112-5330 ________________________________________ From: maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of Michael Thon [mike.thon at gmail.com] Sent: Friday, January 17, 2014 10:27 PM To: MAKER Subject: [maker-devel] another maker re-annotation question We would like to re-run maker, keeping our locus IDs from a previous run, if possible. We added the old maker annotation in maker_gff and set everything else in the re-annotation section to 0. We also set map_forward=1. The output has gene annotations but the locus IDs were not transferred. I did some searching in the mailing list and it seems that our old annotation should be in model_gff. In that case do we need to strip out all the non-gene model features (match_part, etc) or can we leave it as is? Mike _______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org From saneasheikh at gmail.com Fri Jan 17 12:21:40 2014 From: saneasheikh at gmail.com (Sanea Sheikh) Date: Fri, 17 Jan 2014 20:21:40 +0100 Subject: [maker-devel] Problem with re-annotation In-Reply-To: References: Message-ID: Hi Here are the two files that you asked for. The log was from a repeated attempt but the same issue was still there. I have attached the output from the repeated attempt as well so you can have a look at that. Sanea On Fri, Jan 17, 2014 at 6:55 PM, Carson Holt wrote: > Could you send me these two files. I put the full path below based on > your STDERR report. Also this log was from the original run having the > issue, and not a new repeated attempt at that one, correct? > > > First file ?> > > /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1/theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/AR_HYBRID_130113_TINTIN_EF2ON_C1.abinit_masked.0.run0%2Ehmm.snap > > > Second file ?> > > /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1/ > AR_HYBRID_130113_TINTIN_EF2ON_C1.gff > > > Thanks, > Carson > > > From: Sanea Sheikh > Date: Thursday, January 16, 2014 at 3:52 AM > To: , Carson Holt > Subject: Fwd: [maker-devel] Problem with re-annotation > > Hello Carson > Here it is. > Sanea > > On Tue, Jan 14, 2014 at 1:39 AM, Carson Holt wrote: > >> Hi Sanea, >> >> There are no snap calls in your results. It?s as if SNAP never even ran. >> Did you capture STDERR from your second run? If so can you send it to me. >> I just want to see if it even shows SNAP as having run in the progress >> reports. >> >> Thanks, >> Carson >> >> From: Sanea Sheikh >> Date: Monday, January 13, 2014 at 2:17 AM >> To: >> Subject: [maker-devel] Problem with re-annotation >> >> Hello >> >> I am using Maker to annotate a genome for which I only have EST data and >> some protein data. I ran Maker once using this EST and protein data >> (est2genome=1, protein2genome=1). I had the Maker output. I combined all >> the GFF files for all the contigs. I used the combined GFF file to train >> SNAP which gave me a .hmm file. Now I modified the Maker opts control file. >> I provided the hmm file in snap_hmm. I set est2genome=0 and >> protein2genome=0. I ran Maker again assuming that now I have trained the >> gene predictor and I would have better annotations. But now the output file >> that I get does not have Maker annotation. I have attached the control >> files and the output file for the re-run so you can have a look and let me >> know what I am doing wrong in order to re-annotate the genome using the >> output from the previous run. >> >> Sanea >> _______________________________________________ maker-devel mailing list >> maker-devel at box290.bluehost.com >> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org >> > > > -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: run1_0.zip Type: application/zip Size: 2242291 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: AR_HYBRID_130113_TINTIN_EF2ON_C1.gff Type: application/octet-stream Size: 123836 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: AR_HYBRID_130113_TINTIN_EF2ON_C1.abinit_masked.0.run0%2Ehmm.snap Type: application/octet-stream Size: 76 bytes Desc: not available URL: From saneasheikh at gmail.com Sat Jan 18 00:19:26 2014 From: saneasheikh at gmail.com (Sanea Sheikh) Date: Sat, 18 Jan 2014 08:19:26 +0100 Subject: [maker-devel] Problem with re-annotation In-Reply-To: References: Message-ID: Hello Here are the files (test.zip) I got from running Maker again with another HMM. It clearly worked this time. I have attached my HMM (run0.hmm) from the previous run (that went wrong) as well. I can see why snap wasn't calling genes before based on this HMM but do you know why I got an HMM like that? Sanea On Fri, Jan 17, 2014 at 10:34 PM, Carson Holt wrote: > The snap reports are empty, as if SNAP is never calling any genes even > though it runs. Could you try running with a different HMM bundled with > SNAP? Even though it?s not the right species, I just want to see if it will > produce output under different circumstances. > > ?Carson > > > From: Sanea Sheikh > Date: Friday, January 17, 2014 at 12:21 PM > To: Carson Holt > Cc: > Subject: Re: [maker-devel] Problem with re-annotation > > Hi > > Here are the two files that you asked for. > > The log was from a repeated attempt but the same issue was still there. I > have attached the output from the repeated attempt as well so you can have > a look at that. > > Sanea > > > On Fri, Jan 17, 2014 at 6:55 PM, Carson Holt wrote: > >> Could you send me these two files. I put the full path below based on >> your STDERR report. Also this log was from the original run having the >> issue, and not a new repeated attempt at that one, correct? >> >> >> First file ?> >> >> /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1/theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/AR_HYBRID_130113_TINTIN_EF2ON_C1.abinit_masked.0.run0%2Ehmm.snap >> >> >> Second file ?> >> >> /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1/ >> AR_HYBRID_130113_TINTIN_EF2ON_C1.gff >> >> >> Thanks, >> Carson >> >> >> From: Sanea Sheikh >> Date: Thursday, January 16, 2014 at 3:52 AM >> To: , Carson Holt >> Subject: Fwd: [maker-devel] Problem with re-annotation >> >> Hello Carson >> Here it is. >> Sanea >> >> On Tue, Jan 14, 2014 at 1:39 AM, Carson Holt wrote: >> >>> Hi Sanea, >>> >>> There are no snap calls in your results. It?s as if SNAP never even >>> ran. Did you capture STDERR from your second run? If so can you send it >>> to me. I just want to see if it even shows SNAP as having run in the >>> progress reports. >>> >>> Thanks, >>> Carson >>> >>> From: Sanea Sheikh >>> Date: Monday, January 13, 2014 at 2:17 AM >>> To: >>> Subject: [maker-devel] Problem with re-annotation >>> >>> Hello >>> >>> I am using Maker to annotate a genome for which I only have EST data and >>> some protein data. I ran Maker once using this EST and protein data >>> (est2genome=1, protein2genome=1). I had the Maker output. I combined all >>> the GFF files for all the contigs. I used the combined GFF file to train >>> SNAP which gave me a .hmm file. Now I modified the Maker opts control file. >>> I provided the hmm file in snap_hmm. I set est2genome=0 and >>> protein2genome=0. I ran Maker again assuming that now I have trained the >>> gene predictor and I would have better annotations. But now the output file >>> that I get does not have Maker annotation. I have attached the control >>> files and the output file for the re-run so you can have a look and let me >>> know what I am doing wrong in order to re-annotate the genome using the >>> output from the previous run. >>> >>> Sanea >>> _______________________________________________ maker-devel mailing list >>> maker-devel at box290.bluehost.com >>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org >>> >> >> >> > -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: test.zip Type: application/zip Size: 2642437 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: run0.hmm Type: application/octet-stream Size: 43969 bytes Desc: not available URL: From carsonhh at gmail.com Sat Jan 18 10:49:31 2014 From: carsonhh at gmail.com (Carson Holt) Date: Sat, 18 Jan 2014 10:49:31 -0700 Subject: [maker-devel] Problem with re-annotation In-Reply-To: References: Message-ID: I?m not an expert at all the details in the raw HMM, but it looks like all your transition probabilities are 0. You need to regenerate the HMM. How many models were used to generate the original HMM? ?Carson From: Sanea Sheikh Date: Saturday, January 18, 2014 at 12:19 AM To: Carson Holt Cc: Subject: Re: [maker-devel] Problem with re-annotation Hello Here are the files (test.zip) I got from running Maker again with another HMM. It clearly worked this time. I have attached my HMM (run0.hmm) from the previous run (that went wrong) as well. I can see why snap wasn't calling genes before based on this HMM but do you know why I got an HMM like that? Sanea On Fri, Jan 17, 2014 at 10:34 PM, Carson Holt wrote: > The snap reports are empty, as if SNAP is never calling any genes even though > it runs. Could you try running with a different HMM bundled with SNAP? Even > though it?s not the right species, I just want to see if it will produce > output under different circumstances. > > ?Carson > > > From: Sanea Sheikh > Date: Friday, January 17, 2014 at 12:21 PM > To: Carson Holt > Cc: > Subject: Re: [maker-devel] Problem with re-annotation > > Hi > > Here are the two files that you asked for. > > The log was from a repeated attempt but the same issue was still there. I have > attached the output from the repeated attempt as well so you can have a look > at that. > > Sanea > > > On Fri, Jan 17, 2014 at 6:55 PM, Carson Holt wrote: >> Could you send me these two files. I put the full path below based on your >> STDERR report. Also this log was from the original run having the issue, and >> not a new repeated attempt at that one, correct? >> >> >> First file ?> >> /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_red >> undant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130 >> 708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1/theVoid.AR_HYBRID_130113 >> _TINTIN_EF2ON_C1/AR_HYBRID_130113_TINTIN_EF2ON_C1.abinit_masked.0.run0%2Ehmm. >> snap >> >> >> Second file ?> >> /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_red >> undant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130 >> 708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1/AR_HYBRID_130113_TINTIN_ >> EF2ON_C1.gff >> >> >> Thanks, >> Carson >> >> >> From: Sanea Sheikh >> Date: Thursday, January 16, 2014 at 3:52 AM >> To: , Carson Holt >> Subject: Fwd: [maker-devel] Problem with re-annotation >> >> Hello Carson >> Here it is. >> Sanea >> >> On Tue, Jan 14, 2014 at 1:39 AM, Carson Holt wrote: >>> Hi Sanea, >>> >>> There are no snap calls in your results. It?s as if SNAP never even ran. >>> Did you capture STDERR from your second run? If so can you send it to me. >>> I just want to see if it even shows SNAP as having run in the progress >>> reports. >>> >>> Thanks, >>> Carson >>> >>> From: Sanea Sheikh >>> Date: Monday, January 13, 2014 at 2:17 AM >>> To: >>> Subject: [maker-devel] Problem with re-annotation >>> >>> Hello >>> >>> I am using Maker to annotate a genome for which I only have EST data and >>> some protein data. I ran Maker once using this EST and protein data >>> (est2genome=1, protein2genome=1). I had the Maker output. I combined all the >>> GFF files for all the contigs. I used the combined GFF file to train SNAP >>> which gave me a .hmm file. Now I modified the Maker opts control file. I >>> provided the hmm file in snap_hmm. I set est2genome=0 and protein2genome=0. >>> I ran Maker again assuming that now I have trained the gene predictor and I >>> would have better annotations. But now the output file that I get does not >>> have Maker annotation. I have attached the control files and the output file >>> for the re-run so you can have a look and let me know what I am doing wrong >>> in order to re-annotate the genome using the output from the previous run. >>> >>> Sanea >>> _______________________________________________ maker-devel mailing list >>> maker-devel at box290.bluehost.comhttp://box290.bluehost.com/mailman/listinfo/m >>> aker-devel_yandell-lab.org >> >> > -------------- next part -------------- An HTML attachment was scrubbed... URL: From charlos9 at gmail.com Tue Jan 21 10:39:03 2014 From: charlos9 at gmail.com (carlos vargas) Date: Tue, 21 Jan 2014 18:39:03 +0100 Subject: [maker-devel] Problem installing maker In-Reply-To: References: Message-ID: Hi Barry, Thank you for you help. I got maker running, however when I try to install it with MPI support I face some issues. I installed MPICH2 and performed the test that comes with the package and it went smoothly, however when I try to install maker the following messages appear. Thank you in advance, Carlos ~/maker/src$ perl Build.PL MAKER supports distributed parallelization via MPI. Would you like to configure MAKER for MPI (This requires that you have an MPI client installed)? [N ]y Please specify the path to 'mpicc' on your system: [/usr/bin/mpicc ] /usr/bin/mpicc Please specify the path to the directory containing 'mpi.h': [/usr/include/mpi ] /usr/include/mpi Would you like to install the web interface to MAKER (MWAS) on this machine This requires that you be logged in as root or use sudo for './Build install'? [N ] N Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'MAKER' version '2.3' The file 'Build' has been created for you to finish installing MAKER. ============================================================================== STATUS MAKER 2.3 ============================================================================== PERL Dependencies: VERIFIED External Programs: VERIFIED External C Libraries: VERIFIED MPI SUPPORT: ENABLED MWAS Web Interface: DISABLED MAKER PACKAGE: CONFIGURATION OK Important Commands: ./Build installdeps #installs missing PERL dependencies ./Build installexes #installs all missing external programs ./Build install #installs MAKER ./Build status #Shows this status menu Other Commands: ./Build repeatmasker #installs RepeatMasker (asks for RepBase) ./Build blast #installs BLAST (NCBI BLAST+) ./Build exonerate #installs Exonerate (v2 on UNIX / v1 on Mac OSX) ./Build snap #installs SNAP ./Build augustus #installs Augustus ./Build apollo #installs Apollo ./Build gbrowse #installs GBrowse (must be root) ./Build jbrowse #installs JBrowse (MAKER copy, not web accecible) ./Build webapollo #installs WebApollo (use maker2wap to create DBs) ./Build mpich2 #installs MPICH2 (but manual install recommended) ~/maker/src$ ./Build install Configuring MAKER with MPI support Installing MAKER... Configuring MAKER with MPI support Subroutine dl_load_flags redefined at (eval 93) line 8. Installing /home/cvargas/maker/src/../perl/lib/MAKER/ConfigData.pm Skip /home/cvargas/maker/src/../perl/config-x86_64-linux-gnu-thread-multi-5.014002 (unchanged) On Mon, Jan 13, 2014 at 10:21 PM, Barry Moore wrote: > Hi Carlos, > > Did you run ./Build install? If not do that first and then you want to > run the copy of maker in ~/software/maker/bin/maker. > > B > > On Jan 13, 2014, at 1:00 PM, carlos vargas wrote: > > Hello, > > I have been trying to install maker but I've been facing several issues. > After installing all of the prerequisites I ran perl Build.PL and ./Build > install. No issues were detected. Afterwards I tried to test maker by > simply executing maker -h and got the following error: > > Can't locate MAKER/ConfigData.pm in @INC (@INC contains: > ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib > ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl > /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 > /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 > /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. > BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line > 42. > > I found a similar thread which suggested reinstalling (which I did) but I > still face the same issue. The full messages are below. > > > Thank you for your help! > > Carlos > > > ~/software/maker/src$ sudo perl Build.PL > > MAKER supports distributed parallelization via MPI. > Would you like to configure MAKER for MPI (This > requires that you have an MPI client installed)? [N ] > N > > Would you like to install the web interface to MAKER (MWAS) on this machine > This requires that you be logged in as root or use sudo for './Build > install'? [N ] > N > Created MYMETA.yml and MYMETA.json > Creating new 'Build' script for 'MAKER' version '2.3' > > > The file 'Build' has been created for you to finish installing MAKER. > > > > ============================================================================== > STATUS MAKER 2.3 > > ============================================================================== > PERL Dependencies: VERIFIED > External Programs: VERIFIED > External C Libraries: VERIFIED > MPI SUPPORT: DISABLED > MWAS Web Interface: DISABLED > MAKER PACKAGE: CONFIGURATION OK > > > Important Commands: > ./Build installdeps #installs missing PERL dependencies > ./Build installexes #installs all missing external programs > ./Build install #installs MAKER > ./Build status #Shows this status menu > > Other Commands: > ./Build repeatmasker #installs RepeatMasker (asks for RepBase) > ./Build blast #installs BLAST (NCBI BLAST+) > ./Build exonerate #installs Exonerate (v2 on UNIX / v1 on > Mac OSX) > ./Build snap #installs SNAP > ./Build augustus #installs Augustus > ./Build apollo #installs Apollo > ./Build gbrowse #installs GBrowse (must be root) > ./Build jbrowse #installs JBrowse (MAKER copy, not web > accecible) > ./Build webapollo #installs WebApollo (use maker2wap to > create DBs) > ./Build mpich2 #installs MPICH2 (but manual install > recommended) > > ~/software/maker/src$ sudo ./Build install > Building MAKER > Installing MAKER... > Building MAKER > Installing ~/software/maker/src/../perl/lib/MAKER/ConfigData.pm > > ~/software/maker/src$ maker -h > Can't locate MAKER/ConfigData.pm in @INC (@INC contains: > ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib > ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl > /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 > /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 > /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. > BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line > 42. > > > _______________________________________________ > maker-devel mailing list > maker-devel at box290.bluehost.com > http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org > > > Barry Moore > Research Scientist > Dept. of Human Genetics > University of Utah > Salt Lake City, UT 84112 > -------------------------------------------- > (801) 585-3543 > > > > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From dence at genetics.utah.edu Tue Jan 21 10:45:32 2014 From: dence at genetics.utah.edu (Daniel Ence) Date: Tue, 21 Jan 2014 17:45:32 +0000 Subject: [maker-devel] Problem installing maker In-Reply-To: References: , Message-ID: Hi Carlos, That message looks like maker installed correctly. Have you tried running it in MPI now? The command to use MPI for maker will look something like "mpiexec -n X maker" where X is the number of processors you want it to use. Thanks, Daniel Daniel Ence Graduate Student Eccles Institute of Human Genetics University of Utah 15 North 2030 East, Room 2100 Salt Lake City, UT 84112-5330 ________________________________ From: maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of carlos vargas [charlos9 at gmail.com] Sent: Tuesday, January 21, 2014 10:39 AM To: Barry Moore Cc: maker-devel at yandell-lab.org Subject: Re: [maker-devel] Problem installing maker Hi Barry, Thank you for you help. I got maker running, however when I try to install it with MPI support I face some issues. I installed MPICH2 and performed the test that comes with the package and it went smoothly, however when I try to install maker the following messages appear. Thank you in advance, Carlos ~/maker/src$ perl Build.PL MAKER supports distributed parallelization via MPI. Would you like to configure MAKER for MPI (This requires that you have an MPI client installed)? [N ]y Please specify the path to 'mpicc' on your system: [/usr/bin/mpicc ] /usr/bin/mpicc Please specify the path to the directory containing 'mpi.h': [/usr/include/mpi ] /usr/include/mpi Would you like to install the web interface to MAKER (MWAS) on this machine This requires that you be logged in as root or use sudo for './Build install'? [N ] N Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'MAKER' version '2.3' The file 'Build' has been created for you to finish installing MAKER. ============================================================================== STATUS MAKER 2.3 ============================================================================== PERL Dependencies: VERIFIED External Programs: VERIFIED External C Libraries: VERIFIED MPI SUPPORT: ENABLED MWAS Web Interface: DISABLED MAKER PACKAGE: CONFIGURATION OK Important Commands: ./Build installdeps #installs missing PERL dependencies ./Build installexes #installs all missing external programs ./Build install #installs MAKER ./Build status #Shows this status menu Other Commands: ./Build repeatmasker #installs RepeatMasker (asks for RepBase) ./Build blast #installs BLAST (NCBI BLAST+) ./Build exonerate #installs Exonerate (v2 on UNIX / v1 on Mac OSX) ./Build snap #installs SNAP ./Build augustus #installs Augustus ./Build apollo #installs Apollo ./Build gbrowse #installs GBrowse (must be root) ./Build jbrowse #installs JBrowse (MAKER copy, not web accecible) ./Build webapollo #installs WebApollo (use maker2wap to create DBs) ./Build mpich2 #installs MPICH2 (but manual install recommended) ~/maker/src$ ./Build install Configuring MAKER with MPI support Installing MAKER... Configuring MAKER with MPI support Subroutine dl_load_flags redefined at (eval 93) line 8. Installing /home/cvargas/maker/src/../perl/lib/MAKER/ConfigData.pm Skip /home/cvargas/maker/src/../perl/config-x86_64-linux-gnu-thread-multi-5.014002 (unchanged) On Mon, Jan 13, 2014 at 10:21 PM, Barry Moore > wrote: Hi Carlos, Did you run ./Build install? If not do that first and then you want to run the copy of maker in ~/software/maker/bin/maker. B On Jan 13, 2014, at 1:00 PM, carlos vargas wrote: Hello, I have been trying to install maker but I've been facing several issues. After installing all of the prerequisites I ran perl Build.PL and ./Build install. No issues were detected. Afterwards I tried to test maker by simply executing maker -h and got the following error: Can't locate MAKER/ConfigData.pm in @INC (@INC contains: ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42. I found a similar thread which suggested reinstalling (which I did) but I still face the same issue. The full messages are below. Thank you for your help! Carlos ~/software/maker/src$ sudo perl Build.PL MAKER supports distributed parallelization via MPI. Would you like to configure MAKER for MPI (This requires that you have an MPI client installed)? [N ] N Would you like to install the web interface to MAKER (MWAS) on this machine This requires that you be logged in as root or use sudo for './Build install'? [N ] N Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'MAKER' version '2.3' The file 'Build' has been created for you to finish installing MAKER. ============================================================================== STATUS MAKER 2.3 ============================================================================== PERL Dependencies: VERIFIED External Programs: VERIFIED External C Libraries: VERIFIED MPI SUPPORT: DISABLED MWAS Web Interface: DISABLED MAKER PACKAGE: CONFIGURATION OK Important Commands: ./Build installdeps #installs missing PERL dependencies ./Build installexes #installs all missing external programs ./Build install #installs MAKER ./Build status #Shows this status menu Other Commands: ./Build repeatmasker #installs RepeatMasker (asks for RepBase) ./Build blast #installs BLAST (NCBI BLAST+) ./Build exonerate #installs Exonerate (v2 on UNIX / v1 on Mac OSX) ./Build snap #installs SNAP ./Build augustus #installs Augustus ./Build apollo #installs Apollo ./Build gbrowse #installs GBrowse (must be root) ./Build jbrowse #installs JBrowse (MAKER copy, not web accecible) ./Build webapollo #installs WebApollo (use maker2wap to create DBs) ./Build mpich2 #installs MPICH2 (but manual install recommended) ~/software/maker/src$ sudo ./Build install Building MAKER Installing MAKER... Building MAKER Installing ~/software/maker/src/../perl/lib/MAKER/ConfigData.pm ~/software/maker/src$ maker -h Can't locate MAKER/ConfigData.pm in @INC (@INC contains: ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42. _______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org Barry Moore Research Scientist Dept. of Human Genetics University of Utah Salt Lake City, UT 84112 -------------------------------------------- (801) 585-3543 -------------- next part -------------- An HTML attachment was scrubbed... URL: From charlos9 at gmail.com Tue Jan 21 10:49:35 2014 From: charlos9 at gmail.com (carlos vargas) Date: Tue, 21 Jan 2014 18:49:35 +0100 Subject: [maker-devel] Problem installing maker In-Reply-To: References: Message-ID: Thank you very much for your quick reply! Sorry, I forgot to attach the error message. /gnmP05/Carlos/mpiannotate$ ~/mpich2-install/bin/mpiexec -n 4 ~/maker/bin/maker /usr/bin/perl: symbol lookup error: /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so: undefined symbol: mca_base_param_reg_int /usr/bin/perl: symbol lookup error: /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so: undefined symbol: mca_base_param_reg_int /usr/bin/perl: symbol lookup error: /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so: undefined symbol: mca_base_param_reg_int /usr/bin/perl: symbol lookup error: /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so: undefined symbol: mca_base_param_reg_int =================================================================================== = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES = EXIT CODE: 127 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES =================================================================================== On Tue, Jan 21, 2014 at 6:45 PM, Daniel Ence wrote: > Hi Carlos, That message looks like maker installed correctly. Have you > tried running it in MPI now? The command to use MPI for maker will look > something like "mpiexec -n X maker" where X is the number of processors you > want it to use. > > Thanks, > Daniel > > Daniel Ence > Graduate Student > Eccles Institute of Human Genetics > University of Utah > 15 North 2030 East, Room 2100 > Salt Lake City, UT 84112-5330 > ------------------------------ > *From:* maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of > carlos vargas [charlos9 at gmail.com] > *Sent:* Tuesday, January 21, 2014 10:39 AM > *To:* Barry Moore > *Cc:* maker-devel at yandell-lab.org > *Subject:* Re: [maker-devel] Problem installing maker > > Hi Barry, > > Thank you for you help. I got maker running, however when I try to > install it with MPI support I face some issues. I installed MPICH2 and > performed the test that comes with the package and it went smoothly, > however when I try to install maker the following messages appear. > > > Thank you in advance, > > Carlos > > ~/maker/src$ perl Build.PL > > MAKER supports distributed parallelization via MPI. > Would you like to configure MAKER for MPI (This > requires that you have an MPI client installed)? [N ]y > > Please specify the path to 'mpicc' on your system: [/usr/bin/mpicc ] > /usr/bin/mpicc > > Please specify the path to the directory containing 'mpi.h': > [/usr/include/mpi ] > /usr/include/mpi > > Would you like to install the web interface to MAKER (MWAS) on this > machine > This requires that you be logged in as root or use sudo for './Build > install'? [N ] > N > Created MYMETA.yml and MYMETA.json > Creating new 'Build' script for 'MAKER' version '2.3' > > > The file 'Build' has been created for you to finish installing MAKER. > > > > ============================================================================== > STATUS MAKER 2.3 > > ============================================================================== > PERL Dependencies: VERIFIED > External Programs: VERIFIED > External C Libraries: VERIFIED > MPI SUPPORT: ENABLED > MWAS Web Interface: DISABLED > MAKER PACKAGE: CONFIGURATION OK > > > Important Commands: > ./Build installdeps #installs missing PERL dependencies > ./Build installexes #installs all missing external programs > ./Build install #installs MAKER > ./Build status #Shows this status menu > > Other Commands: > ./Build repeatmasker #installs RepeatMasker (asks for RepBase) > ./Build blast #installs BLAST (NCBI BLAST+) > ./Build exonerate #installs Exonerate (v2 on UNIX / v1 on Mac OSX) > ./Build snap #installs SNAP > ./Build augustus #installs Augustus > ./Build apollo #installs Apollo > ./Build gbrowse #installs GBrowse (must be root) > ./Build jbrowse #installs JBrowse (MAKER copy, not web accecible) > ./Build webapollo #installs WebApollo (use maker2wap to create DBs) > ./Build mpich2 #installs MPICH2 (but manual install recommended) > ~/maker/src$ ./Build install > Configuring MAKER with MPI support > Installing MAKER... > Configuring MAKER with MPI support > Subroutine dl_load_flags redefined at (eval 93) line 8. > Installing /home/cvargas/maker/src/../perl/lib/MAKER/ConfigData.pm > Skip > /home/cvargas/maker/src/../perl/config-x86_64-linux-gnu-thread-multi-5.014002 > (unchanged) > > > > > On Mon, Jan 13, 2014 at 10:21 PM, Barry Moore wrote: > >> Hi Carlos, >> >> Did you run ./Build install? If not do that first and then you want to >> run the copy of maker in ~/software/maker/bin/maker. >> >> B >> >> On Jan 13, 2014, at 1:00 PM, carlos vargas wrote: >> >> Hello, >> >> I have been trying to install maker but I've been facing several >> issues. After installing all of the prerequisites I ran perl Build.PL and >> ./Build install. No issues were detected. Afterwards I tried to test maker >> by simply executing maker -h and got the following error: >> >> Can't locate MAKER/ConfigData.pm in @INC (@INC contains: >> ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib >> ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl >> /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 >> /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 >> /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. >> BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line >> 42. >> >> I found a similar thread which suggested reinstalling (which I did) but >> I still face the same issue. The full messages are below. >> >> >> Thank you for your help! >> >> Carlos >> >> >> ~/software/maker/src$ sudo perl Build.PL >> >> MAKER supports distributed parallelization via MPI. >> Would you like to configure MAKER for MPI (This >> requires that you have an MPI client installed)? [N ] >> N >> >> Would you like to install the web interface to MAKER (MWAS) on this >> machine >> This requires that you be logged in as root or use sudo for './Build >> install'? [N ] >> N >> Created MYMETA.yml and MYMETA.json >> Creating new 'Build' script for 'MAKER' version '2.3' >> >> >> The file 'Build' has been created for you to finish installing MAKER. >> >> >> >> ============================================================================== >> STATUS MAKER 2.3 >> >> ============================================================================== >> PERL Dependencies: VERIFIED >> External Programs: VERIFIED >> External C Libraries: VERIFIED >> MPI SUPPORT: DISABLED >> MWAS Web Interface: DISABLED >> MAKER PACKAGE: CONFIGURATION OK >> >> >> Important Commands: >> ./Build installdeps #installs missing PERL dependencies >> ./Build installexes #installs all missing external programs >> ./Build install #installs MAKER >> ./Build status #Shows this status menu >> >> Other Commands: >> ./Build repeatmasker #installs RepeatMasker (asks for RepBase) >> ./Build blast #installs BLAST (NCBI BLAST+) >> ./Build exonerate #installs Exonerate (v2 on UNIX / v1 on >> Mac OSX) >> ./Build snap #installs SNAP >> ./Build augustus #installs Augustus >> ./Build apollo #installs Apollo >> ./Build gbrowse #installs GBrowse (must be root) >> ./Build jbrowse #installs JBrowse (MAKER copy, not web >> accecible) >> ./Build webapollo #installs WebApollo (use maker2wap to >> create DBs) >> ./Build mpich2 #installs MPICH2 (but manual install >> recommended) >> >> ~/software/maker/src$ sudo ./Build install >> Building MAKER >> Installing MAKER... >> Building MAKER >> Installing ~/software/maker/src/../perl/lib/MAKER/ConfigData.pm >> >> ~/software/maker/src$ maker -h >> Can't locate MAKER/ConfigData.pm in @INC (@INC contains: >> ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib >> ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl >> /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 >> /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 >> /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. >> BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line >> 42. >> >> >> _______________________________________________ >> maker-devel mailing list >> maker-devel at box290.bluehost.com >> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org >> >> >> Barry Moore >> Research Scientist >> Dept. of Human Genetics >> University of Utah >> Salt Lake City, UT 84112 >> -------------------------------------------- >> (801) 585-3543 >> >> >> >> >> > -------------- next part -------------- An HTML attachment was scrubbed... URL: From carsonhh at gmail.com Tue Jan 21 10:55:10 2014 From: carsonhh at gmail.com (Carson Holt) Date: Tue, 21 Jan 2014 10:55:10 -0700 Subject: [maker-devel] Problem installing maker In-Reply-To: References: Message-ID: The error message says you are using OpenMPI and not MPICH2 ?> /usr/lib/openmpi/lib/openmpi To use OpenMPI set the following before installing maker and before running maker (best to just add it to your ~/.bash_profile) export LD_PRELOAD=/usr/lib/openmpi/lib/libmpi.so You will have to rerun the ?perl Build.PL? and ?./Build install? steps after running this command. Setting LD_PRELOAD is required for any program to use OpenMPI?s shared libraries. Thanks, Carosn From: carlos vargas Date: Tuesday, January 21, 2014 at 10:49 AM To: Daniel Ence Cc: "maker-devel at yandell-lab.org" Subject: Re: [maker-devel] Problem installing maker Thank you very much for your quick reply! Sorry, I forgot to attach the error message. /gnmP05/Carlos/mpiannotate$ ~/mpich2-install/bin/mpiexec -n 4 ~/maker/bin/maker /usr/bin/perl: symbol lookup error: /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so: undefined symbol: mca_base_param_reg_int /usr/bin/perl: symbol lookup error: /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so: undefined symbol: mca_base_param_reg_int /usr/bin/perl: symbol lookup error: /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so: undefined symbol: mca_base_param_reg_int /usr/bin/perl: symbol lookup error: /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so: undefined symbol: mca_base_param_reg_int ============================================================================ ======= = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES = EXIT CODE: 127 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES ============================================================================ ======= On Tue, Jan 21, 2014 at 6:45 PM, Daniel Ence wrote: > Hi Carlos, That message looks like maker installed correctly. Have you tried > running it in MPI now? The command to use MPI for maker will look something > like "mpiexec -n X maker" where X is the number of processors you want it to > use. > > Thanks, > Daniel > > Daniel Ence > Graduate Student > Eccles Institute of Human Genetics > University of Utah > 15 North 2030 East, Room 2100 > Salt Lake City, UT 84112-5330 > > From: maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of carlos > vargas [charlos9 at gmail.com] > Sent: Tuesday, January 21, 2014 10:39 AM > To: Barry Moore > Cc: maker-devel at yandell-lab.org > Subject: Re: [maker-devel] Problem installing maker > > Hi Barry, > > Thank you for you help. I got maker running, however when I try to install it > with MPI support I face some issues. I installed MPICH2 and performed the test > that comes with the package and it went smoothly, however when I try to > install maker the following messages appear. > > > Thank you in advance, > > Carlos > > ~/maker/src$ perl Build.PL > > MAKER supports distributed parallelization via MPI. > Would you like to configure MAKER for MPI (This > requires that you have an MPI client installed)? [N ]y > > Please specify the path to 'mpicc' on your system: [/usr/bin/mpicc ] > /usr/bin/mpicc > > Please specify the path to the directory containing 'mpi.h': [/usr/include/mpi > ] > /usr/include/mpi > > Would you like to install the web interface to MAKER (MWAS) on this machine > This requires that you be logged in as root or use sudo for './Build install'? > [N ] > N > Created MYMETA.yml and MYMETA.json > Creating new 'Build' script for 'MAKER' version '2.3' > > > The file 'Build' has been created for you to finish installing MAKER. > > > ============================================================================== > STATUS MAKER 2.3 > ============================================================================== > PERL Dependencies: VERIFIED > External Programs: VERIFIED > External C Libraries: VERIFIED > MPI SUPPORT: ENABLED > MWAS Web Interface: DISABLED > MAKER PACKAGE: CONFIGURATION OK > > > Important Commands: > ./Build installdeps#installs missing PERL dependencies > ./Build installexes#installs all missing external programs > ./Build install#installs MAKER > ./Build status#Shows this status menu > > Other Commands: > ./Build repeatmasker#installs RepeatMasker (asks for RepBase) > ./Build blast#installs BLAST (NCBI BLAST+) > ./Build exonerate#installs Exonerate (v2 on UNIX / v1 on Mac OSX) > ./Build snap#installs SNAP > ./Build augustus#installs Augustus > ./Build apollo#installs Apollo > ./Build gbrowse#installs GBrowse (must be root) > ./Build jbrowse#installs JBrowse (MAKER copy, not web accecible) > ./Build webapollo#installs WebApollo (use maker2wap to create DBs) > ./Build mpich2#installs MPICH2 (but manual install recommended) > ~/maker/src$ ./Build install > Configuring MAKER with MPI support > Installing MAKER... > Configuring MAKER with MPI support > Subroutine dl_load_flags redefined at (eval 93) line 8. > Installing /home/cvargas/maker/src/../perl/lib/MAKER/ConfigData.pm > Skip > /home/cvargas/maker/src/../perl/config-x86_64-linux-gnu-thread-multi-5.014002 > (unchanged) > > > > > On Mon, Jan 13, 2014 at 10:21 PM, Barry Moore wrote: >> Hi Carlos, >> >> Did you run ./Build install? If not do that first and then you want to run >> the copy of maker in ~/software/maker/bin/maker. >> >> B >> >> On Jan 13, 2014, at 1:00 PM, carlos vargas wrote: >> >>> Hello, >>> >>> I have been trying to install maker but I've been facing several issues. >>> After installing all of the prerequisites I ran perl Build.PL and ./Build >>> install. No issues were detected. Afterwards I tried to test maker by simply >>> executing maker -h and got the following error: >>> >>> Can't locate MAKER/ConfigData.pm in @INC (@INC contains: >>> ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib >>> ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl >>> /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 >>> /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 >>> /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. >>> BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42. >>> >>> I found a similar thread which suggested reinstalling (which I did) but I >>> still face the same issue. The full messages are below. >>> >>> >>> Thank you for your help! >>> >>> Carlos >>> >>> >>> ~/software/maker/src$ sudo perl Build.PL >>> >>> MAKER supports distributed parallelization via MPI. >>> Would you like to configure MAKER for MPI (This >>> requires that you have an MPI client installed)? [N ] >>> N >>> >>> Would you like to install the web interface to MAKER (MWAS) on this machine >>> This requires that you be logged in as root or use sudo for './Build >>> install'? [N ] >>> N >>> Created MYMETA.yml and MYMETA.json >>> Creating new 'Build' script for 'MAKER' version '2.3' >>> >>> >>> The file 'Build' has been created for you to finish installing MAKER. >>> >>> >>> ============================================================================ >>> == >>> STATUS MAKER 2.3 >>> ============================================================================ >>> == >>> PERL Dependencies: VERIFIED >>> External Programs: VERIFIED >>> External C Libraries: VERIFIED >>> MPI SUPPORT: DISABLED >>> MWAS Web Interface: DISABLED >>> MAKER PACKAGE: CONFIGURATION OK >>> >>> >>> Important Commands: >>> ./Build installdeps #installs missing PERL dependencies >>> ./Build installexes #installs all missing external programs >>> ./Build install #installs MAKER >>> ./Build status #Shows this status menu >>> >>> Other Commands: >>> ./Build repeatmasker #installs RepeatMasker (asks for RepBase) >>> ./Build blast #installs BLAST (NCBI BLAST+) >>> ./Build exonerate #installs Exonerate (v2 on UNIX / v1 on Mac >>> OSX) >>> ./Build snap #installs SNAP >>> ./Build augustus #installs Augustus >>> ./Build apollo #installs Apollo >>> ./Build gbrowse #installs GBrowse (must be root) >>> ./Build jbrowse #installs JBrowse (MAKER copy, not web >>> accecible) >>> ./Build webapollo #installs WebApollo (use maker2wap to create >>> DBs) >>> ./Build mpich2 #installs MPICH2 (but manual install >>> recommended) >>> >>> ~/software/maker/src$ sudo ./Build install >>> Building MAKER >>> Installing MAKER... >>> Building MAKER >>> Installing ~/software/maker/src/../perl/lib/MAKER/ConfigData.pm >>> >>> ~/software/maker/src$ maker -h >>> Can't locate MAKER/ConfigData.pm in @INC (@INC contains: >>> ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib >>> ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl >>> /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 >>> /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 >>> /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. >>> BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42. >>> >>> >>> _______________________________________________ >>> maker-devel mailing list >>> maker-devel at box290.bluehost.com >>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org >> >> Barry Moore >> Research Scientist >> Dept. of Human Genetics >> University of Utah >> Salt Lake City, UT 84112 >> -------------------------------------------- >> (801) 585-3543 >> >> >> >> > _______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org -------------- next part -------------- An HTML attachment was scrubbed... URL: From carsonhh at gmail.com Tue Jan 21 10:56:55 2014 From: carsonhh at gmail.com (Carson Holt) Date: Tue, 21 Jan 2014 10:56:55 -0700 Subject: [maker-devel] Problem installing maker In-Reply-To: References: Message-ID: FYI. You may be mixing your MPI configurations, by supplying some values from MPICH2 and others from OpenMPI. You will need to check your configurations. ?Carson From: Carson Holt Date: Tuesday, January 21, 2014 at 10:55 AM To: carlos vargas , Daniel Ence Cc: "maker-devel at yandell-lab.org" Subject: Re: [maker-devel] Problem installing maker The error message says you are using OpenMPI and not MPICH2 ?> /usr/lib/openmpi/lib/openmpi To use OpenMPI set the following before installing maker and before running maker (best to just add it to your ~/.bash_profile) export LD_PRELOAD=/usr/lib/openmpi/lib/libmpi.so You will have to rerun the ?perl Build.PL? and ?./Build install? steps after running this command. Setting LD_PRELOAD is required for any program to use OpenMPI?s shared libraries. Thanks, Carosn From: carlos vargas Date: Tuesday, January 21, 2014 at 10:49 AM To: Daniel Ence Cc: "maker-devel at yandell-lab.org" Subject: Re: [maker-devel] Problem installing maker Thank you very much for your quick reply! Sorry, I forgot to attach the error message. /gnmP05/Carlos/mpiannotate$ ~/mpich2-install/bin/mpiexec -n 4 ~/maker/bin/maker /usr/bin/perl: symbol lookup error: /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so: undefined symbol: mca_base_param_reg_int /usr/bin/perl: symbol lookup error: /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so: undefined symbol: mca_base_param_reg_int /usr/bin/perl: symbol lookup error: /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so: undefined symbol: mca_base_param_reg_int /usr/bin/perl: symbol lookup error: /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so: undefined symbol: mca_base_param_reg_int ============================================================================ ======= = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES = EXIT CODE: 127 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES ============================================================================ ======= On Tue, Jan 21, 2014 at 6:45 PM, Daniel Ence wrote: > Hi Carlos, That message looks like maker installed correctly. Have you tried > running it in MPI now? The command to use MPI for maker will look something > like "mpiexec -n X maker" where X is the number of processors you want it to > use. > > Thanks, > Daniel > > Daniel Ence > Graduate Student > Eccles Institute of Human Genetics > University of Utah > 15 North 2030 East, Room 2100 > Salt Lake City, UT 84112-5330 > > From: maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of carlos > vargas [charlos9 at gmail.com] > Sent: Tuesday, January 21, 2014 10:39 AM > To: Barry Moore > Cc: maker-devel at yandell-lab.org > Subject: Re: [maker-devel] Problem installing maker > > Hi Barry, > > Thank you for you help. I got maker running, however when I try to install it > with MPI support I face some issues. I installed MPICH2 and performed the test > that comes with the package and it went smoothly, however when I try to > install maker the following messages appear. > > > Thank you in advance, > > Carlos > > ~/maker/src$ perl Build.PL > > MAKER supports distributed parallelization via MPI. > Would you like to configure MAKER for MPI (This > requires that you have an MPI client installed)? [N ]y > > Please specify the path to 'mpicc' on your system: [/usr/bin/mpicc ] > /usr/bin/mpicc > > Please specify the path to the directory containing 'mpi.h': [/usr/include/mpi > ] > /usr/include/mpi > > Would you like to install the web interface to MAKER (MWAS) on this machine > This requires that you be logged in as root or use sudo for './Build install'? > [N ] > N > Created MYMETA.yml and MYMETA.json > Creating new 'Build' script for 'MAKER' version '2.3' > > > The file 'Build' has been created for you to finish installing MAKER. > > > ============================================================================== > STATUS MAKER 2.3 > ============================================================================== > PERL Dependencies: VERIFIED > External Programs: VERIFIED > External C Libraries: VERIFIED > MPI SUPPORT: ENABLED > MWAS Web Interface: DISABLED > MAKER PACKAGE: CONFIGURATION OK > > > Important Commands: > ./Build installdeps#installs missing PERL dependencies > ./Build installexes#installs all missing external programs > ./Build install#installs MAKER > ./Build status#Shows this status menu > > Other Commands: > ./Build repeatmasker#installs RepeatMasker (asks for RepBase) > ./Build blast#installs BLAST (NCBI BLAST+) > ./Build exonerate#installs Exonerate (v2 on UNIX / v1 on Mac OSX) > ./Build snap#installs SNAP > ./Build augustus#installs Augustus > ./Build apollo#installs Apollo > ./Build gbrowse#installs GBrowse (must be root) > ./Build jbrowse#installs JBrowse (MAKER copy, not web accecible) > ./Build webapollo#installs WebApollo (use maker2wap to create DBs) > ./Build mpich2#installs MPICH2 (but manual install recommended) > ~/maker/src$ ./Build install > Configuring MAKER with MPI support > Installing MAKER... > Configuring MAKER with MPI support > Subroutine dl_load_flags redefined at (eval 93) line 8. > Installing /home/cvargas/maker/src/../perl/lib/MAKER/ConfigData.pm > Skip > /home/cvargas/maker/src/../perl/config-x86_64-linux-gnu-thread-multi-5.014002 > (unchanged) > > > > > On Mon, Jan 13, 2014 at 10:21 PM, Barry Moore wrote: >> Hi Carlos, >> >> Did you run ./Build install? If not do that first and then you want to run >> the copy of maker in ~/software/maker/bin/maker. >> >> B >> >> On Jan 13, 2014, at 1:00 PM, carlos vargas wrote: >> >>> Hello, >>> >>> I have been trying to install maker but I've been facing several issues. >>> After installing all of the prerequisites I ran perl Build.PL and ./Build >>> install. No issues were detected. Afterwards I tried to test maker by simply >>> executing maker -h and got the following error: >>> >>> Can't locate MAKER/ConfigData.pm in @INC (@INC contains: >>> ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib >>> ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl >>> /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 >>> /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 >>> /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. >>> BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42. >>> >>> I found a similar thread which suggested reinstalling (which I did) but I >>> still face the same issue. The full messages are below. >>> >>> >>> Thank you for your help! >>> >>> Carlos >>> >>> >>> ~/software/maker/src$ sudo perl Build.PL >>> >>> MAKER supports distributed parallelization via MPI. >>> Would you like to configure MAKER for MPI (This >>> requires that you have an MPI client installed)? [N ] >>> N >>> >>> Would you like to install the web interface to MAKER (MWAS) on this machine >>> This requires that you be logged in as root or use sudo for './Build >>> install'? [N ] >>> N >>> Created MYMETA.yml and MYMETA.json >>> Creating new 'Build' script for 'MAKER' version '2.3' >>> >>> >>> The file 'Build' has been created for you to finish installing MAKER. >>> >>> >>> ============================================================================ >>> == >>> STATUS MAKER 2.3 >>> ============================================================================ >>> == >>> PERL Dependencies: VERIFIED >>> External Programs: VERIFIED >>> External C Libraries: VERIFIED >>> MPI SUPPORT: DISABLED >>> MWAS Web Interface: DISABLED >>> MAKER PACKAGE: CONFIGURATION OK >>> >>> >>> Important Commands: >>> ./Build installdeps #installs missing PERL dependencies >>> ./Build installexes #installs all missing external programs >>> ./Build install #installs MAKER >>> ./Build status #Shows this status menu >>> >>> Other Commands: >>> ./Build repeatmasker #installs RepeatMasker (asks for RepBase) >>> ./Build blast #installs BLAST (NCBI BLAST+) >>> ./Build exonerate #installs Exonerate (v2 on UNIX / v1 on Mac >>> OSX) >>> ./Build snap #installs SNAP >>> ./Build augustus #installs Augustus >>> ./Build apollo #installs Apollo >>> ./Build gbrowse #installs GBrowse (must be root) >>> ./Build jbrowse #installs JBrowse (MAKER copy, not web >>> accecible) >>> ./Build webapollo #installs WebApollo (use maker2wap to create >>> DBs) >>> ./Build mpich2 #installs MPICH2 (but manual install >>> recommended) >>> >>> ~/software/maker/src$ sudo ./Build install >>> Building MAKER >>> Installing MAKER... >>> Building MAKER >>> Installing ~/software/maker/src/../perl/lib/MAKER/ConfigData.pm >>> >>> ~/software/maker/src$ maker -h >>> Can't locate MAKER/ConfigData.pm in @INC (@INC contains: >>> ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib >>> ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl >>> /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 >>> /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 >>> /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42. >>> BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42. >>> >>> >>> _______________________________________________ >>> maker-devel mailing list >>> maker-devel at box290.bluehost.com >>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org >> >> Barry Moore >> Research Scientist >> Dept. of Human Genetics >> University of Utah >> Salt Lake City, UT 84112 >> -------------------------------------------- >> (801) 585-3543 >> >> >> >> > _______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.comhttp://box290.bluehost.com/mailman/listinfo/m aker-devel_yandell-lab.org -------------- next part -------------- An HTML attachment was scrubbed... URL: From charlos9 at gmail.com Wed Jan 22 17:34:10 2014 From: charlos9 at gmail.com (carlos vargas) Date: Thu, 23 Jan 2014 01:34:10 +0100 Subject: [maker-devel] Problem before running ab-initio predictors Message-ID: Hello, I finally was able to install maker with mpi support, however now I see a new error which I wasn't seeing before. Both for mpiexec and single maker runs I observe the following error just after it finishes running exonerate. Thank you for your time! Carlos deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation cleaning clusters.... total clusters:1 now processing 0 cleaning clusters.... total clusters:1 now processing 0 annotating transcripts Making transcripts ...processing 0 of 1 ERROR: Not a valid predictor in auto_annoator::get_pred_shot at /home/cvargas/maker/bin/../lib/maker/auto_annotator.pm line 2155. maker::auto_annotator::get_pred_shot(FastaSeq=HASH(0x3eb6920), ">2973", "/gnmP05/Carlos/mpiannotatetest/longest.maker.output/longest_d"..., undef, HASH(0x3eeb9f8), 0, "trnascan", HASH(0x3fb1f80), runlog=HASH(0x3ec6e38), ...) called at /home/cvargas/maker/bin/../lib/maker/auto_annotator.pm line 1923 maker::auto_annotator::run_it(ARRAY(0x3fab4d0), "/gnmP05/Carlos/mpiannotatetest/longest.maker.output/longest_d"..., FastaSeq=HASH(0x3eb6920), FastaSeq=HASH(0x3ed42d0), ">2973", "trnascan", HASH(0x3fb1f80)) called at /home/cvargas/maker/bin/../lib/maker/ auto_annotator.pm line 920 maker::auto_annotator::annotate_trans(FastaSeq=HASH(0x3ed42d0), FastaSeq=HASH(0x3eb6920), ">2973", 2973, ARRAY(0x3e818f8), "/gnmP05/Carlos/mpiannotatetest/longest.maker.output/longest_d"..., HASH(0x3fb1f80), runlog=HASH(0x3ec6e38)) called at /home/cvargas/maker/bin/../lib/Process/MpiChunk.pm line 3775 Process::MpiChunk::__ANON__() called at /home/cvargas/maker/bin/../lib/Error.pm line 415 eval {...} called at /home/cvargas/maker/bin/../lib/Error.pm line 407 Error::subs::try(CODE(0x3eb6d58), HASH(0x3eb74b8)) called at /home/cvargas/maker/bin/../lib/Process/MpiChunk.pm line 4215 Process::MpiChunk::_go(Process::MpiChunk=HASH(0x3e90218), "run", HASH(0x3e81748), 1, 4) called at /home/cvargas/maker/bin/../lib/Process/MpiChunk.pm line 341 Process::MpiChunk::run(Process::MpiChunk=HASH(0x3e90218), 0) called at /home/cvargas/maker/bin/../lib/Process/MpiChunk.pm line 357 Process::MpiChunk::run_all(Process::MpiChunk=HASH(0x3e90218), 0) called at /home/cvargas/maker/bin/../lib/Process/MpiTiers.pm line 287 Process::MpiTiers::run_all(Process::MpiTiers=HASH(0x3ea34b8), 0) called at /home/cvargas/maker/bin/../lib/Process/MpiTiers.pm line 287 Process::MpiTiers::run_all(Process::MpiTiers=HASH(0x3e733e8), 0) called at /home/cvargas/maker/bin/maker line 670 --> rank=NA, hostname=Ritchie ERROR: Failed while annotating transcripts ERROR: Chunk failed at level:1, tier_type:4 FAILED CONTIG:2973 ERROR: Chunk failed at level:6, tier_type:0 FAILED CONTIG:2973 examining contents of the fasta file and run log -------------- next part -------------- An HTML attachment was scrubbed... URL: From Ambrose.Andongabo at rothamsted.ac.uk Thu Jan 23 04:19:50 2014 From: Ambrose.Andongabo at rothamsted.ac.uk (Ambrose Andongabo (RRes-Roth)) Date: Thu, 23 Jan 2014 11:19:50 +0000 Subject: [maker-devel] MAKER annotation and Trinity output Message-ID: Dear all, I am using the latest version of MAKER and I keep on getting this error message when I activate fgenesh gene predictor in the maker_opts.ctl file. It runs successfully when using SNAP, GeneMark and AUGUSTUS. If I do not provide my ESTs evidence in the form of Trinity output, the pipeline will run successfully using all the four gene predictors including fgenesh. I wonder if someone encountered such a problem before #--------- command -------------# Widget::fgenesh: /home/data/MAKER_2.30/maker/bin/../lib/Widget/fgenesh/fgenesh_wrap /home/data/mg_annotation/fgenesh/fgenesh /home/data/mg_annotation/fgenesh/Fusarium /tmp/maker_cAePfY/0/164_0.557-1163.Fusarium.auto_annotator.fgenesh.fasta -exon_table:/tmp/maker_cAePfY/0/164_0.557-1163.Fusarium.auto_annotator.xdef.fgenesh > /tmp/maker_cAePfY/0/164_0.557-1163.Fusarium.auto_annotator.fgenesh #-------------------------------# ERROR: FGENESH Failed ERROR: FgenesH failed --> rank=NA, hostname=vnc.rothamsted.ac.uk ERROR: Failed while annotating transcripts ERROR: Chunk failed at level:1, tier_type:4 FAILED CONTIG:contig_1 ERROR: Chunk failed at level:6, tier_type:0 FAILED CONTIG:contig_1 examining contents of the fasta file and run log I will be grateful for your contribution Thanks Ambrose -- This message has been scanned for viruses and dangerous content by MailScanner, and we believe but do not warrant that this e-mail and any attachments thereto do not contain any viruses. However, you are fully responsible for performing any virus scanning. -------------- next part -------------- An HTML attachment was scrubbed... URL: From carson.holt at genetics.utah.edu Thu Jan 23 08:54:05 2014 From: carson.holt at genetics.utah.edu (Carson Holt) Date: Thu, 23 Jan 2014 15:54:05 +0000 Subject: [maker-devel] regarding MAKER In-Reply-To: <979080620.2022.1390472597931.JavaMail.root@mail.icgeb.res.in> References: <765683564.2020.1390472529829.JavaMail.root@mail.icgeb.res.in> <979080620.2022.1390472597931.JavaMail.root@mail.icgeb.res.in> Message-ID: Hi Nadita, You appear to be using input files with spaces in their names. It?s best to avoid whitespace in file names for linux based programs, as they will not always be interpreted correctly. Thanks, Carson On 1/23/14, 3:23 AM, "Nandita Pasari" wrote: > >Sir, > >I am trying to run maker from bin. >I was successful in running the example data but as I proceeded to a >second run from the bin folder I am getting an error as follows: > > >STATUS: Parsing control files... >STATUS: Processing and indexing input FASTA files... >mv: target `435.maker.output/mpi_blastdb/te_proteins%2Efasta.mpi.10.0/' >is not a directory >mv: target `435.maker.output/mpi_blastdb/te_proteins%2Efasta.mpi.10/' is >not a directory >ERROR: SplitDB not created correctly > > at /home/shams/Downloads/maker/bin/../lib/GI.pm line 1116. > GI::split_db("/home/shams/Downloads/maker/data/te_proteins.fasta", >"protein", 10, "/home/shams/Downloads/maker/bin/contig >435.maker.output/mpi_b"..., "C") called at maker line 518 >--> rank=NA, hostname=shams-ThinkCentre-M90p > >How can this be rectified? > >Nandita Pasari >Pre Doctoral Fellow >Synthetic Biology and Biofuels Group >ICGEB >New Delhi > From nandita at icgeb.res.in Thu Jan 23 03:23:17 2014 From: nandita at icgeb.res.in (Nandita Pasari) Date: Thu, 23 Jan 2014 15:53:17 +0530 (IST) Subject: [maker-devel] regarding MAKER In-Reply-To: <765683564.2020.1390472529829.JavaMail.root@mail.icgeb.res.in> Message-ID: <979080620.2022.1390472597931.JavaMail.root@mail.icgeb.res.in> Sir, I am trying to run maker from bin. I was successful in running the example data but as I proceeded to a second run from the bin folder I am getting an error as follows: STATUS: Parsing control files... STATUS: Processing and indexing input FASTA files... mv: target `435.maker.output/mpi_blastdb/te_proteins%2Efasta.mpi.10.0/' is not a directory mv: target `435.maker.output/mpi_blastdb/te_proteins%2Efasta.mpi.10/' is not a directory ERROR: SplitDB not created correctly at /home/shams/Downloads/maker/bin/../lib/GI.pm line 1116. GI::split_db("/home/shams/Downloads/maker/data/te_proteins.fasta", "protein", 10, "/home/shams/Downloads/maker/bin/contig 435.maker.output/mpi_b"..., "C") called at maker line 518 --> rank=NA, hostname=shams-ThinkCentre-M90p How can this be rectified? Nandita Pasari Pre Doctoral Fellow Synthetic Biology and Biofuels Group ICGEB New Delhi From carsonhh at gmail.com Thu Jan 23 10:51:50 2014 From: carsonhh at gmail.com (Carson Holt) Date: Thu, 23 Jan 2014 10:51:50 -0700 Subject: [maker-devel] Problem before running ab-initio predictors In-Reply-To: References: Message-ID: Could you make sure trna=0 is set in the maker_opt.ctl file, and leave that off for the time being. It is a new feature that was added since 2.28, and may be a little buggy. I?ll try and replicate the error here. Could you send me a copy of your maker_opts.ctl file. For the mean time just turn off the trna option and you should be able to run, you can always run with trna=1 later (even by itself as a separate run) without loosing anything. Thanks, Carson From: carlos vargas Date: Wednesday, January 22, 2014 at 5:34 PM To: "maker-devel at yandell-lab.org" Subject: [maker-devel] Problem before running ab-initio predictors Hello, I finally was able to install maker with mpi support, however now I see a new error which I wasn't seeing before. Both for mpiexec and single maker runs I observe the following error just after it finishes running exonerate. Thank you for your time! Carlos deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide preparing evidence clusters for annotations Preparing evidence for hint based annotation cleaning clusters.... total clusters:1 now processing 0 cleaning clusters.... total clusters:1 now processing 0 annotating transcripts Making transcripts ...processing 0 of 1 ERROR: Not a valid predictor in auto_annoator::get_pred_shot at /home/cvargas/maker/bin/../lib/maker/auto_annotator.pm line 2155. maker::auto_annotator::get_pred_shot(FastaSeq=HASH(0x3eb6920), ">2973", "/gnmP05/Carlos/mpiannotatetest/longest.maker.output/longest_d"..., undef, HASH(0x3eeb9f8), 0, "trnascan", HASH(0x3fb1f80), runlog=HASH(0x3ec6e38), ...) called at /home/cvargas/maker/bin/../lib/maker/auto_annotator.pm line 1923 maker::auto_annotator::run_it(ARRAY(0x3fab4d0), "/gnmP05/Carlos/mpiannotatetest/longest.maker.output/longest_d"..., FastaSeq=HASH(0x3eb6920), FastaSeq=HASH(0x3ed42d0), ">2973", "trnascan", HASH(0x3fb1f80)) called at /home/cvargas/maker/bin/../lib/maker/auto_annotator.pm line 920 maker::auto_annotator::annotate_trans(FastaSeq=HASH(0x3ed42d0), FastaSeq=HASH(0x3eb6920), ">2973", 2973, ARRAY(0x3e818f8), "/gnmP05/Carlos/mpiannotatetest/longest.maker.output/longest_d"..., HASH(0x3fb1f80), runlog=HASH(0x3ec6e38)) called at /home/cvargas/maker/bin/../lib/Process/MpiChunk.pm line 3775 Process::MpiChunk::__ANON__() called at /home/cvargas/maker/bin/../lib/Error.pm line 415 eval {...} called at /home/cvargas/maker/bin/../lib/Error.pm line 407 Error::subs::try(CODE(0x3eb6d58), HASH(0x3eb74b8)) called at /home/cvargas/maker/bin/../lib/Process/MpiChunk.pm line 4215 Process::MpiChunk::_go(Process::MpiChunk=HASH(0x3e90218), "run", HASH(0x3e81748), 1, 4) called at /home/cvargas/maker/bin/../lib/Process/MpiChunk.pm line 341 Process::MpiChunk::run(Process::MpiChunk=HASH(0x3e90218), 0) called at /home/cvargas/maker/bin/../lib/Process/MpiChunk.pm line 357 Process::MpiChunk::run_all(Process::MpiChunk=HASH(0x3e90218), 0) called at /home/cvargas/maker/bin/../lib/Process/MpiTiers.pm line 287 Process::MpiTiers::run_all(Process::MpiTiers=HASH(0x3ea34b8), 0) called at /home/cvargas/maker/bin/../lib/Process/MpiTiers.pm line 287 Process::MpiTiers::run_all(Process::MpiTiers=HASH(0x3e733e8), 0) called at /home/cvargas/maker/bin/maker line 670 --> rank=NA, hostname=Ritchie ERROR: Failed while annotating transcripts ERROR: Chunk failed at level:1, tier_type:4 FAILED CONTIG:2973 ERROR: Chunk failed at level:6, tier_type:0 FAILED CONTIG:2973 examining contents of the fasta file and run log _______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org -------------- next part -------------- An HTML attachment was scrubbed... URL: From carsonhh at gmail.com Fri Jan 24 11:32:08 2014 From: carsonhh at gmail.com (Carson Holt) Date: Fri, 24 Jan 2014 11:32:08 -0700 Subject: [maker-devel] MAKER annotation and Trinity output Message-ID: Hi Ambrose, It is likely caused by an issue with hints being generated for Fgenesh, I?ve attached an updated module to be placed here ?> .../maker/lib/Widget/fgenesh.pm. I will also integrate this into the MAKER download. Thanks, Carson From: "Ambrose Andongabo (RRes-Roth)" Date: Thursday, January 23, 2014 at 4:19 AM To: "maker-devel at yandell-lab.org" Subject: [maker-devel] MAKER annotation and Trinity output Dear all, I am using the latest version of MAKER and I keep on getting this error message when I activate fgenesh gene predictor in the maker_opts.ctl file. It runs successfully when using SNAP, GeneMark and AUGUSTUS. If I do not provide my ESTs evidence in the form of Trinity output, the pipeline will run successfully using all the four gene predictors including fgenesh. I wonder if someone encountered such a problem before #--------- command -------------# Widget::fgenesh: /home/data/MAKER_2.30/maker/bin/../lib/Widget/fgenesh/fgenesh_wrap /home/data/mg_annotation/fgenesh/fgenesh /home/data/mg_annotation/fgenesh/Fusarium /tmp/maker_cAePfY/0/164_0.557-1163.Fusarium.auto_annotator.fgenesh.fasta -exon_table:/tmp/maker_cAePfY/0/164_0.557-1163.Fusarium.auto_annotator.xdef. fgenesh > /tmp/maker_cAePfY/0/164_0.557-1163.Fusarium.auto_annotator.fgenesh #-------------------------------# ERROR: FGENESH Failed ERROR: FgenesH failed --> rank=NA, hostname=vnc.rothamsted.ac.uk ERROR: Failed while annotating transcripts ERROR: Chunk failed at level:1, tier_type:4 FAILED CONTIG:contig_1 ERROR: Chunk failed at level:6, tier_type:0 FAILED CONTIG:contig_1 examining contents of the fasta file and run log I will be grateful for your contribution Thanks Ambrose -- This message has been scanned for viruses and dangerous content by MailScanner , and we believe but do not warrant that this e-mail and any attachments thereto do not contain any viruses. However, you are fully responsible for performing any virus scanning. _______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: fgenesh.pm Type: text/x-perl-script Size: 19743 bytes Desc: not available URL: From Ambrose.Andongabo at rothamsted.ac.uk Mon Jan 27 03:44:24 2014 From: Ambrose.Andongabo at rothamsted.ac.uk (Ambrose Andongabo (RRes-Roth)) Date: Mon, 27 Jan 2014 10:44:24 +0000 Subject: [maker-devel] Trinity and fgenesh wrapper for MAKER Message-ID: Dear Carson, Many thanks for the quick fix to the fgenesh.pm perl module in MAKER. I ran the annotation over the weekend and obtained the desired results. Thanks Ambrose -- This message has been scanned for viruses and dangerous content by MailScanner, and we believe but do not warrant that this e-mail and any attachments thereto do not contain any viruses. However, you are fully responsible for performing any virus scanning. -------------- next part -------------- An HTML attachment was scrubbed... URL: From Michael.Li3 at AGR.GC.CA Mon Jan 27 09:17:29 2014 From: Michael.Li3 at AGR.GC.CA (Li, Michael) Date: Mon, 27 Jan 2014 16:17:29 +0000 Subject: [maker-devel] Transcriptome Assmeblies for Protein Evidence Message-ID: <229AF11430CC544B8987653593A750A98765E327@ONOTTAXES3.AGR.GC.CA> Hi everyone, I've been tasked to run MAKER on a genome that we have recently sequenced and assembled de novo. Along with the genome, the transcriptome has also been assembled using SOAPdenovo. I've been told that we've experimented with different kmers, but I'm not sure which kmer is ideal for use. One kmer assembly has the highest N50 for contigs, while another has the highest N50 for scaffolds, but it comes with a lot of gaps. Would gaps impact how MAKER handles evidence alignment or the overall annotation? Or would either work well with MAKER? Thanks in advance! Michael Li Co-op Student From carsonhh at gmail.com Mon Jan 27 09:22:57 2014 From: carsonhh at gmail.com (Carson Holt) Date: Mon, 27 Jan 2014 09:22:57 -0700 Subject: [maker-devel] Transcriptome Assmeblies for Protein Evidence Message-ID: You should use the scaffolds. Large gaps will not affect the annotation and are common in the scaffolds of all newly assembled genomes. Thanks, Carson On 1/27/14, 9:17 AM, "Li, Michael" wrote: >Hi everyone, > >I've been tasked to run MAKER on a genome that we have recently sequenced >and assembled de novo. Along with the genome, the transcriptome has also >been assembled using SOAPdenovo. I've been told that we've experimented >with different kmers, but I'm not sure which kmer is ideal for use. > >One kmer assembly has the highest N50 for contigs, while another has the >highest N50 for scaffolds, but it comes with a lot of gaps. > >Would gaps impact how MAKER handles evidence alignment or the overall >annotation? Or would either work well with MAKER? > >Thanks in advance! > >Michael Li >Co-op Student > >_______________________________________________ >maker-devel mailing list >maker-devel at box290.bluehost.com >http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org From carsonhh at gmail.com Mon Jan 27 10:27:28 2014 From: carsonhh at gmail.com (Carson Holt) Date: Mon, 27 Jan 2014 10:27:28 -0700 Subject: [maker-devel] Trinity and fgenesh wrapper for MAKER In-Reply-To: References: Message-ID: Thanks for letting me know. I?m glad it?s working. ?Carson From: "Ambrose Andongabo (RRes-Roth)" Date: Monday, January 27, 2014 at 3:44 AM To: Carson Holt , "maker-devel at yandell-lab.org" Subject: Trinity and fgenesh wrapper for MAKER Dear Carson, Many thanks for the quick fix to the fgenesh.pm perl module in MAKER. I ran the annotation over the weekend and obtained the desired results. Thanks Ambrose -- This message has been scanned for viruses and dangerous content by MailScanner , and we believe but do not warrant that this e-mail and any attachments thereto do not contain any viruses. However, you are fully responsible for performing any virus scanning. -------------- next part -------------- An HTML attachment was scrubbed... URL: From carson.holt at genetics.utah.edu Mon Jan 27 11:29:21 2014 From: carson.holt at genetics.utah.edu (Carson Holt) Date: Mon, 27 Jan 2014 18:29:21 +0000 Subject: [maker-devel] MAKER failing In-Reply-To: References: Message-ID: You need to supply the captured STDERR from your maker run. The cause of any failure will be printed to the screen Thanks, Carson From: Seth Munholland > Date: Monday, January 27, 2014 at 11:24 AM To: > Subject: MAKER failing Hello Everyone, I recently installed MAKER 2.28 and the installation went smoothly. When I ran it on my assembly the first time I didn't properly configure the CTL files and so genemark and snap were not run (I didn't supply hmm links). After correcting this and running MAKER again my log file consists of nothing but STARTED...FAILED. I don't know what files would be useful to attach to help figure out the problem, so I'm starting with the CTL.log files I used and the resultant master_datastore_index.log file. Any input would be greatly appreciated. Seth Munholland, B.Sc. Department of Biological Sciences Rm. 304 Biology Building University of Windsor 401 Sunset Ave. N9B 3P4 T: (519) 253-3000 Ext: 4755 -------------- next part -------------- An HTML attachment was scrubbed... URL: From munholl at uwindsor.ca Mon Jan 27 11:24:17 2014 From: munholl at uwindsor.ca (Seth Munholland) Date: Mon, 27 Jan 2014 13:24:17 -0500 Subject: [maker-devel] MAKER failing Message-ID: Hello Everyone, I recently installed MAKER 2.28 and the installation went smoothly. When I ran it on my assembly the first time I didn't properly configure the CTL files and so genemark and snap were not run (I didn't supply hmm links). After correcting this and running MAKER again my log file consists of nothing but STARTED...FAILED. I don't know what files would be useful to attach to help figure out the problem, so I'm starting with the CTL.log files I used and the resultant master_datastore_index.log file. Any input would be greatly appreciated. Seth Munholland, B.Sc. Department of Biological Sciences Rm. 304 Biology Building University of Windsor 401 Sunset Ave. N9B 3P4 T: (519) 253-3000 Ext: 4755 -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: maker_bopts.log Type: text/x-log Size: 1413 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: maker_exe.log Type: text/x-log Size: 1309 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: maker_opts.log Type: text/x-log Size: 4712 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: OAC_Rex_AllPathsLG_Scaffolds_master_datastore_index.log Type: text/x-log Size: 2434293 bytes Desc: not available URL: From sbrubaker at solazyme.com Mon Jan 27 12:27:41 2014 From: sbrubaker at solazyme.com (Shane Brubaker) Date: Mon, 27 Jan 2014 19:27:41 +0000 Subject: [maker-devel] Introduction Message-ID: <61D01ACB70C1E141A150BA9F586D5BFA50EFC711@EXCHANGE-MB01.internal.solazyme.com> Hello, I'd like to introduce you to Mike D'Eletto. He is developing an open-source deep functional annotation pipeline to run numerous downstream program on predicted genes. I was wondering if this could be something interesting to bundle with MAKER. I met a person, I forget their name, at PAG 2014 who was involved with MAKER, and we discussed it briefly. I think it could be a beneficial idea. Thanks! - Shane Brubaker -------------- next part -------------- An HTML attachment was scrubbed... URL: From bmoore at genetics.utah.edu Mon Jan 27 18:54:41 2014 From: bmoore at genetics.utah.edu (Barry Moore) Date: Tue, 28 Jan 2014 01:54:41 +0000 Subject: [maker-devel] Introduction In-Reply-To: <61D01ACB70C1E141A150BA9F586D5BFA50EFC711@EXCHANGE-MB01.internal.solazyme.com> References: <61D01ACB70C1E141A150BA9F586D5BFA50EFC711@EXCHANGE-MB01.internal.solazyme.com> Message-ID: <6D6E50E3-0FAD-4E49-A1CA-6650C035E964@genetics.utah.edu> Thanks Shane and hi Mike. Sounds cool - is there a link to the tool? B Barry Moore Research Scientist Dept. Human Genetics University of Utah On Jan 27, 2014, at 12:30 PM, "Shane Brubaker" > wrote: Hello, I?d like to introduce you to Mike D?Eletto. He is developing an open-source deep functional annotation pipeline to run numerous downstream program on predicted genes. I was wondering if this could be something interesting to bundle with MAKER. I met a person, I forget their name, at PAG 2014 who was involved with MAKER, and we discussed it briefly. I think it could be a beneficial idea. Thanks! - Shane Brubaker _______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org -------------- next part -------------- An HTML attachment was scrubbed... URL: From jcjb at cam.ac.uk Tue Jan 28 05:14:03 2014 From: jcjb at cam.ac.uk (Jenny Barna) Date: Tue, 28 Jan 2014 12:14:03 +0000 (GMT) Subject: [maker-devel] WARNING: Multiple MAKER processes... Message-ID: We have had maker since 2010. Maker 2.10 and 2.11 compiled with mpich2 were and still are working with mpi as far as I can tell. These have a binary called mpi_maker. I have kept the same mpich2 installed to try to make sure things stay working. It has been picked up by subsequent maker builds. It is mpich2-1.2.1p1 . I have seen the posting by Marc P. Hoeppner on 10/26/13 about 'WARNING: Multiple MAKER processes have been started in the same directory.' which is the same warning I have had. Trying all my previous installations I now see this is happening in all 2.2? distributions I have. Versions 2.10/2.11 are not doing this. It is happening with 2.2?/2.30p where no separate mpi_maker binary is made. Trying new mpich 3.0.4 as advised in the posting by Marc has not worked. It appears to build but fails at once with severe mpi errors. Tests included with that mpi distro worked. I am aware the maker WARNING behaviour is indicative of mpi types having become mixed but have not been able to correct. Jenny Barna | jcjb at cam.ac.uk Bioinformatics and Computational Biology | computing.bio.cam.ac.uk Dept of Biochemistry | +44 1223 333644 80 Tennis Court Road, Cambridge, CB2 1GA, UK From sbrubaker at solazyme.com Tue Jan 28 10:34:16 2014 From: sbrubaker at solazyme.com (Shane Brubaker) Date: Tue, 28 Jan 2014 17:34:16 +0000 Subject: [maker-devel] Introduction In-Reply-To: <6D6E50E3-0FAD-4E49-A1CA-6650C035E964@genetics.utah.edu> References: <61D01ACB70C1E141A150BA9F586D5BFA50EFC711@EXCHANGE-MB01.internal.solazyme.com> <6D6E50E3-0FAD-4E49-A1CA-6650C035E964@genetics.utah.edu> Message-ID: <61D01ACB70C1E141A150BA9F586D5BFA50EFCB79@EXCHANGE-MB01.internal.solazyme.com> He has not put it out yet but can send you a link once it's ready. :) From: Barry Moore [mailto:bmoore at genetics.utah.edu] Sent: Monday, January 27, 2014 5:55 PM To: Shane Brubaker Cc: maker-devel at yandell-lab.org; Mike D'Eletto (mikedeletto at gmail.com) Subject: Re: [maker-devel] Introduction Thanks Shane and hi Mike. Sounds cool - is there a link to the tool? B Barry Moore Research Scientist Dept. Human Genetics University of Utah On Jan 27, 2014, at 12:30 PM, "Shane Brubaker" > wrote: Hello, I'd like to introduce you to Mike D'Eletto. He is developing an open-source deep functional annotation pipeline to run numerous downstream program on predicted genes. I was wondering if this could be something interesting to bundle with MAKER. I met a person, I forget their name, at PAG 2014 who was involved with MAKER, and we discussed it briefly. I think it could be a beneficial idea. Thanks! - Shane Brubaker _______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org -------------- next part -------------- An HTML attachment was scrubbed... URL: From carsonhh at gmail.com Tue Jan 28 10:58:03 2014 From: carsonhh at gmail.com (Carson Holt) Date: Tue, 28 Jan 2014 10:58:03 -0700 Subject: [maker-devel] WARNING: Multiple MAKER processes... In-Reply-To: References: Message-ID: Hi Jenny, There are three locations that are key to running with MPI. 1. The location of mpicc 2. the location of mpi.h 3. the location of mpiexec These files are common to all MPI flavors, but are incompatible between MPI flavor and version. For example, if you use mpicc to compile with the wrong mpi.h, it will fail. If you compile and then try and execute with the wrong mpiexec, it will fail. So you need to make sure all 3 are coming from the same version when running maker or any MPI program. A common mistake is to just call mpiexec direct on the command line. Your system may in fact call the wrong mpiexec when you do that (use ?which mpiexec? to see which one is being called when you just type mpiexec). Also when configuring MAKER, manually review the path to mpicc and mpi.h given during the ?perl Build.PL? configuration step to make sure they are coming from the same version and flavor of MPI. Also there is no mpi_maker. The standard 'maker' command will now be MPI enabled if you say ?yes' to the 'configure for MPI' question during the 'perl Build.PL' step of the install. I just installed MPICH3 and ran MAKER on a test job. Here is what I did step-by-step ?> #first install MPICH3 wget http://www.mpich.org/static/downloads/3.0.4/mpich-3.0.4.tar.gz tar -zxvf mpich-3.0.4.tar.gz cd mpich-3.0.4 #note that I configure with shared libraries enabled *this is not the default!! #also set prefix to wherever you want it installed ./configure --enable-shared=yes --prefix=/usr/local/mpich3 make make install #now cofigure MAKER cd /usr/local/maker/src perl Build.PL #say yes to MPI question #give full path to mpicc ?> /usr/local/mpich3/bin/mpicc #give full path to mpi.h containing directory ?> /usr/local/mpich3/include ./Build ./Build install #test using full paths to executables /usr/local/mpich3/bin/mpiexec -n 3 /usr/local/maker/bin/maker In addition, use MAKER 2.30. It has the best MPI performance of any version of MAKER. Also you can use OpenMPI rather than MPICH if you choose. It actually scales better than MPICH. The main difference is that you must set LD_PRELOAD to the location of libmpi.so before even trying to install MAKER. It must also be set before running MAKER (or any program that uses OpenMPI's shared libraries), so it's best just to add it to your ~/.bash_profile. (i.e. export LD_PRELOAD=/usr/local/openmpi/lib/libmpi.so). Note however that having this set will cause errors for MPICH, so be careful if switching back and forth between MPI flavors. Thanks, Carson On 1/28/14, 5:14 AM, "Jenny Barna" wrote: > >We have had maker since 2010. Maker 2.10 and 2.11 compiled with mpich2 >were and still are working with mpi as far as I can tell. These have >a binary called mpi_maker. > >I have kept the same mpich2 installed to try to make sure things stay >working. It has been picked up by subsequent maker builds. >It is mpich2-1.2.1p1 . > >I have seen the posting by Marc P. Hoeppner on 10/26/13 about >'WARNING: Multiple MAKER processes have been started in the same >directory.' which is the same warning I have had. > >Trying all my previous installations I now see this is happening in all >2.2? distributions I have. Versions 2.10/2.11 are not doing this. >It is happening with 2.2?/2.30p where no separate mpi_maker binary is >made. > >Trying new mpich 3.0.4 as advised in the posting by Marc has not worked. >It appears to build but fails at once with severe mpi errors. Tests >included >with that mpi distro worked. > >I am aware the maker WARNING behaviour is indicative of mpi types having >become mixed but have not been able to correct. > > > >Jenny Barna | jcjb at cam.ac.uk >Bioinformatics and Computational Biology | computing.bio.cam.ac.uk >Dept of Biochemistry | +44 1223 333644 >80 Tennis Court Road, Cambridge, CB2 1GA, UK > > >_______________________________________________ >maker-devel mailing list >maker-devel at box290.bluehost.com >http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org From barry.utah at gmail.com Wed Jan 29 20:58:37 2014 From: barry.utah at gmail.com (Barry Moore) Date: Wed, 29 Jan 2014 20:58:37 -0700 Subject: [maker-devel] Genome Annotation Library (Version 0.2.2) Message-ID: The Sequence Ontology is please to announce the release of the Genome Annotation Library (GAL) Version 0.2.2. GAL is a library of Perl modules that makes working with sequence features in GFF3/GVF files straight forward and intuitive. GAL also provides numerous parser classes for converting other formats to GFF3 and makes writing new parsers easy. GAL takes advantage of the ontology based relationships captured in SO-based sequence feature data to allow users to easily traverse the relationships between features in a GFF3 file. In addition to the GAL programming library many scripts utilizing the library are included as well as several stand-alone scripts for working with GFF/GVF and other genomic dataset. Updates in this version include: -Adding bin/footprint script -Adding gal_indexer script -Adding bin/gene_CDS_footprint script -New CPAN style html docs for GAL -Updates to gtf2gff3 -Adding warnings when mrna.pm can not return CDS or protein sequence -Added progress counter to Storage::SQLite::load_files -Adding --template option to gff_tool -Adding templates/gff_tool_gvf_example2.tt -Adding gal_remove_transcripts and gal_gff_tool -Adding fix_gvf function to bin/gff_tool -Added --clean to gal_protein_genes -Adding GAL::Base::open_file For more information, to access the GAL docs and to download GAL code please visit: http://www.sequenceontology.org/software/GAL.html Barry Moore Research Scientist Dept. of Human Genetics Dept. of Biomedical Informatics University of Utah Salt Lake City, UT 84112 -------------------------------------------- (801) 585-3543 -------------- next part -------------- An HTML attachment was scrubbed... URL: From S.M.Schmidt at uva.nl Thu Jan 30 07:30:18 2014 From: S.M.Schmidt at uva.nl (Schmidt, Sarah) Date: Thu, 30 Jan 2014 14:30:18 +0000 Subject: [maker-devel] Maker fails to annotate large contigs Message-ID: Dear Carson, When running maker on my genome assembly (roughly 60 Mb), it keeps failing the largest contigs with either error: DIED RANK 3:4:0:3 DIED COUNT 2 or DIED RANK 4:4:0:0 DIED COUNT 1 DIED RANK 4 DIED COUNT 1. Do you know what might be the problem? I am using Maker 2.28 with MPI support. Thanks in advance, Sarah -------------- next part -------------- An HTML attachment was scrubbed... URL: From carsonhh at gmail.com Thu Jan 30 08:04:28 2014 From: carsonhh at gmail.com (Carson Holt) Date: Thu, 30 Jan 2014 08:04:28 -0700 Subject: [maker-devel] Maker fails to annotate large contigs Message-ID: What are the errors from the STDERR printed to screen? That will tell you the specifics of why it is failing. Redirect to a file to capture it and I can take a look as well. Note you may need to set a higher number of retries to get it to run again. Thanks, Carson From: "Schmidt, Sarah" Date: Thursday, January 30, 2014 at 7:30 AM To: "maker-devel at yandell-lab.org" Subject: [maker-devel] Maker fails to annotate large contigs Dear Carson, When running maker on my genome assembly (roughly 60 Mb), it keeps failing the largest contigs with either error: DIED RANK 3:4:0:3 DIED COUNT 2 or DIED RANK 4:4:0:0 DIED COUNT 1 DIED RANK 4 DIED COUNT 1. Do you know what might be the problem? I am using Maker 2.28 with MPI support. Thanks in advance, Sarah _______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org -------------- next part -------------- An HTML attachment was scrubbed... URL: From darasappan at gmail.com Thu Jan 30 11:18:48 2014 From: darasappan at gmail.com (dhivya arasappan) Date: Thu, 30 Jan 2014 12:18:48 -0600 Subject: [maker-devel] maker annotation with cufflinks output Message-ID: <516896DE-1ACB-460B-9842-90E12CB72343@gmail.com> Hello, I am trying to annotate a 200 mb plant genome for which I have a very good assembly. I tried to denovo assemble RNA-seq data using trinity and ran maker using my genome assembly and the trinity results. I did not get as many transcripts as expected, around 10,000 transcripts. So, I decided to try a different approach. I did a genome assisted assembly of the RNA-seq data using tophat/cufflinks. This pipeline generated 21,000 genes, 29,000 transcripts. I then ran maker using my genome assembly and the cufflinks result. I get much less number of transcripts as a result. If cufflinks found 29000 transcripts by mapping to the genome, I'm confused as to why maker is not finding the same. Any suggestions would be appreciated. Thanks Dhivya From dence at genetics.utah.edu Thu Jan 30 13:51:10 2014 From: dence at genetics.utah.edu (Daniel Ence) Date: Thu, 30 Jan 2014 20:51:10 +0000 Subject: [maker-devel] maker annotation with cufflinks output In-Reply-To: <516896DE-1ACB-460B-9842-90E12CB72343@gmail.com> References: <516896DE-1ACB-460B-9842-90E12CB72343@gmail.com> Message-ID: Hi Dhivya, I think there a few numbers that could be helpful to understand what's happening here. How many transcripts did Trinity assembly the RNA-seq data into? Also, you had 29,000 transcripts from cufflinks, but fewer from MAKER when you gave it the cufflinks data. How many transcripts did MAKER identify with the cufflinks data? Did you still get more than the 10,000 transcripts that you found with just the Trinity data? A key part of MAKER's approach to genome annotation that might be affecting it's performance is that it only annotates a gene where there is both evidence (like your RNA-seq data) and an ab-initio prediction. If a prediction is unsupported by the evidence, then MAKER won't annotate a gene and if evidence aligns where there's no prediction, MAKER won't annotate a gene either. What ab-initio predictors are you using and have they been trained specific genome? You can force MAKER to automatically promote evidence alignments to a gene model by setting the est2genome option to 1, but that will usually give you many false positives. Try rerunning it with either the Trinity data or the Cufflinks data and with est2genome set to 1, and let us know how that affects the MAKER results. Thanks, Daniel Daniel Ence Graduate Student Eccles Institute of Human Genetics University of Utah 15 North 2030 East, Room 2100 Salt Lake City, UT 84112-5330 ________________________________________ From: maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of dhivya arasappan [darasappan at gmail.com] Sent: Thursday, January 30, 2014 11:18 AM To: maker-devel at yandell-lab.org Subject: [maker-devel] maker annotation with cufflinks output Hello, I am trying to annotate a 200 mb plant genome for which I have a very good assembly. I tried to denovo assemble RNA-seq data using trinity and ran maker using my genome assembly and the trinity results. I did not get as many transcripts as expected, around 10,000 transcripts. So, I decided to try a different approach. I did a genome assisted assembly of the RNA-seq data using tophat/cufflinks. This pipeline generated 21,000 genes, 29,000 transcripts. I then ran maker using my genome assembly and the cufflinks result. I get much less number of transcripts as a result. If cufflinks found 29000 transcripts by mapping to the genome, I'm confused as to why maker is not finding the same. Any suggestions would be appreciated. Thanks Dhivya _______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org From darasappan at gmail.com Thu Jan 30 14:00:07 2014 From: darasappan at gmail.com (dhivya arasappan) Date: Thu, 30 Jan 2014 15:00:07 -0600 Subject: [maker-devel] maker annotation with cufflinks output Message-ID: <8B185515-42FE-4EB2-8275-FE090541E49B@gmail.com> Hello, I am trying to annotate a 200 mb plant genome for which I have a very good assembly. I tried to denovo assemble RNA-seq data using trinity and ran maker using my genome assembly and the trinity results. I did not get as many transcripts as expected, around 10,000 transcripts. So, I decided to try a different approach. I did a genome assisted assembly of the RNA-seq data using tophat/cufflinks. This pipeline generated 21,000 genes, 29,000 transcripts. I then ran maker using my genome assembly and the cufflinks result. I get much less number of transcripts as a result. If cufflinks found 29000 transcripts by mapping to the genome, I'm confused as to why maker is not finding the same. Any suggestions would be appreciated. Thanks Dhivya From carsonhh at gmail.com Thu Jan 30 14:14:53 2014 From: carsonhh at gmail.com (Carson Holt) Date: Thu, 30 Jan 2014 14:14:53 -0700 Subject: [maker-devel] maker annotation with cufflinks output In-Reply-To: References: <516896DE-1ACB-460B-9842-90E12CB72343@gmail.com> Message-ID: What you get back from cufflinks should not necessarily be considered a transcript count, and you should always expect the count given by cufflinks to be high relative to assembly methods like trinity (especially in plants). This is because repetitive elements, spurious alignments, and pseudogenes will all inflate the count because it is an alignment based method which can be more sensitive but will also generate a lot of false positives. Fortunately the false positives will mostly be singe exon results and will be filtered out by maker. Also your mRNA-seq data from cufflinks will contribute to hints that can generate genes in the absence of an ab-intio gene prediction, but if the gene finder doesn?t think the hints make sense it will ignore them. So a lot of cufflinks results that don?t make sense with respect to ORF etc., will fall into the category of being ignored. In addition, you should try running your pipeline through CEGMA (http://korflab.ucdavis.edu/datasets/cegma/) to identify the expected completeness of the genome. For example if a genome of 70% completeness then you only expect to recover 70% of the genes. I believe CEGMA can also be run online from the iPlant discovery environment and iPlant atmosphere images. Also make sure you are including proteins with your MAKER run, as not all genes will be expressed, so mRNAseq will only capture a portion of the genes and that portion can be as low as 50%. Thanks, Carson On 1/30/14, 1:51 PM, "Daniel Ence" wrote: >Hi Dhivya, > >I think there a few numbers that could be helpful to understand what's >happening here. > >How many transcripts did Trinity assembly the RNA-seq data into? Also, >you had 29,000 transcripts from cufflinks, but fewer from MAKER when you >gave it the cufflinks data. How many transcripts did MAKER identify with >the cufflinks data? Did you still get more than the 10,000 transcripts >that you found with just the Trinity data? > >A key part of MAKER's approach to genome annotation that might be >affecting it's performance is that it only annotates a gene where there >is both evidence (like your RNA-seq data) and an ab-initio prediction. If >a prediction is unsupported by the evidence, then MAKER won't annotate a >gene and if evidence aligns where there's no prediction, MAKER won't >annotate a gene either. What ab-initio predictors are you using and have >they been trained specific genome? > >You can force MAKER to automatically promote evidence alignments to a >gene model by setting the est2genome option to 1, but that will usually >give you many false positives. > >Try rerunning it with either the Trinity data or the Cufflinks data and >with est2genome set to 1, and let us know how that affects the MAKER >results. > >Thanks, >Daniel > >Daniel Ence >Graduate Student >Eccles Institute of Human Genetics >University of Utah >15 North 2030 East, Room 2100 >Salt Lake City, UT 84112-5330 >________________________________________ >From: maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of >dhivya arasappan [darasappan at gmail.com] >Sent: Thursday, January 30, 2014 11:18 AM >To: maker-devel at yandell-lab.org >Subject: [maker-devel] maker annotation with cufflinks output > >Hello, > >I am trying to annotate a 200 mb plant genome for which I have a very >good assembly. > >I tried to denovo assemble RNA-seq data using trinity and ran maker >using my genome assembly and the trinity results. I did not get as >many transcripts as expected, around 10,000 transcripts. > >So, I decided to try a different approach. I did a genome assisted >assembly of the RNA-seq data using tophat/cufflinks. This pipeline >generated 21,000 genes, 29,000 transcripts. I then ran maker using my >genome assembly and the cufflinks result. I get much less number of >transcripts as a result. > >If cufflinks found 29000 transcripts by mapping to the genome, I'm >confused as to why maker is not finding the same. > >Any suggestions would be appreciated. > >Thanks >Dhivya > > >_______________________________________________ >maker-devel mailing list >maker-devel at box290.bluehost.com >http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org > >_______________________________________________ >maker-devel mailing list >maker-devel at box290.bluehost.com >http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org From ranjani at uga.edu Thu Jan 30 17:59:56 2014 From: ranjani at uga.edu (Sivaranjani Namasivayam) Date: Fri, 31 Jan 2014 00:59:56 +0000 Subject: [maker-devel] maker annotation with cufflinks output In-Reply-To: References: <516896DE-1ACB-460B-9842-90E12CB72343@gmail.com> , Message-ID: Hi All, This is a problem I have been having for quite some time; maker predicts much lower number of genes or proteins than in my evidence RNA-seq transcripts. My genome is not repetitive and is atleast 90% complete. I tried setting est2genome to 1, but that still doesn't seem to increase the predicted gene set too much. If I input ~13000 genes(21000 transcripts) as evidence I get predictions of ~5000 genes(6000 transcripts). I ran MAKER again with the transcripts that didn't have a gene model predicted in the first run, and this time MAKER predicted gene models for ~20-30% of those transcripts. Is there anything that can be done to increase the predicted gene count? Thanks, Ranjani ________________________________________ From: maker-devel on behalf of Carson Holt Sent: Thursday, January 30, 2014 4:14 PM To: Daniel Ence; dhivya arasappan; maker-devel at yandell-lab.org Subject: Re: [maker-devel] maker annotation with cufflinks output What you get back from cufflinks should not necessarily be considered a transcript count, and you should always expect the count given by cufflinks to be high relative to assembly methods like trinity (especially in plants). This is because repetitive elements, spurious alignments, and pseudogenes will all inflate the count because it is an alignment based method which can be more sensitive but will also generate a lot of false positives. Fortunately the false positives will mostly be singe exon results and will be filtered out by maker. Also your mRNA-seq data from cufflinks will contribute to hints that can generate genes in the absence of an ab-intio gene prediction, but if the gene finder doesn?t think the hints make sense it will ignore them. So a lot of cufflinks results that don?t make sense with respect to ORF etc., will fall into the category of being ignored. In addition, you should try running your pipeline through CEGMA (http://korflab.ucdavis.edu/datasets/cegma/) to identify the expected completeness of the genome. For example if a genome of 70% completeness then you only expect to recover 70% of the genes. I believe CEGMA can also be run online from the iPlant discovery environment and iPlant atmosphere images. Also make sure you are including proteins with your MAKER run, as not all genes will be expressed, so mRNAseq will only capture a portion of the genes and that portion can be as low as 50%. Thanks, Carson On 1/30/14, 1:51 PM, "Daniel Ence" wrote: >Hi Dhivya, > >I think there a few numbers that could be helpful to understand what's >happening here. > >How many transcripts did Trinity assembly the RNA-seq data into? Also, >you had 29,000 transcripts from cufflinks, but fewer from MAKER when you >gave it the cufflinks data. How many transcripts did MAKER identify with >the cufflinks data? Did you still get more than the 10,000 transcripts >that you found with just the Trinity data? > >A key part of MAKER's approach to genome annotation that might be >affecting it's performance is that it only annotates a gene where there >is both evidence (like your RNA-seq data) and an ab-initio prediction. If >a prediction is unsupported by the evidence, then MAKER won't annotate a >gene and if evidence aligns where there's no prediction, MAKER won't >annotate a gene either. What ab-initio predictors are you using and have >they been trained specific genome? > >You can force MAKER to automatically promote evidence alignments to a >gene model by setting the est2genome option to 1, but that will usually >give you many false positives. > >Try rerunning it with either the Trinity data or the Cufflinks data and >with est2genome set to 1, and let us know how that affects the MAKER >results. > >Thanks, >Daniel > >Daniel Ence >Graduate Student >Eccles Institute of Human Genetics >University of Utah >15 North 2030 East, Room 2100 >Salt Lake City, UT 84112-5330 >________________________________________ >From: maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of >dhivya arasappan [darasappan at gmail.com] >Sent: Thursday, January 30, 2014 11:18 AM >To: maker-devel at yandell-lab.org >Subject: [maker-devel] maker annotation with cufflinks output > >Hello, > >I am trying to annotate a 200 mb plant genome for which I have a very >good assembly. > >I tried to denovo assemble RNA-seq data using trinity and ran maker >using my genome assembly and the trinity results. I did not get as >many transcripts as expected, around 10,000 transcripts. > >So, I decided to try a different approach. I did a genome assisted >assembly of the RNA-seq data using tophat/cufflinks. This pipeline >generated 21,000 genes, 29,000 transcripts. I then ran maker using my >genome assembly and the cufflinks result. I get much less number of >transcripts as a result. > >If cufflinks found 29000 transcripts by mapping to the genome, I'm >confused as to why maker is not finding the same. > >Any suggestions would be appreciated. > >Thanks >Dhivya > > >_______________________________________________ >maker-devel mailing list >maker-devel at box290.bluehost.com >http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org > >_______________________________________________ >maker-devel mailing list >maker-devel at box290.bluehost.com >http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org _______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org From carsonhh at gmail.com Fri Jan 31 00:20:40 2014 From: carsonhh at gmail.com (Carson Holt) Date: Fri, 31 Jan 2014 00:20:40 -0700 Subject: [maker-devel] maker annotation with cufflinks output In-Reply-To: References: <516896DE-1ACB-460B-9842-90E12CB72343@gmail.com> Message-ID: So just a few suggestions. If you are getting fewer genes than you expect, that is usually an indication that the evidence provided is insufficient, the gene predictors need to be retrained, the repeat masking is insufficient, or the assembly has problems. Here is more explanation on each point: 1. In addition to any mRNA/EST data, you should provided full proteomes from a minimum of two species as closely related as possible, and perhaps a comprehensive database such as UniProt/Swissprot. Note that based on experience the comprehensive database cannot substitute for a related species proteome, they can complement it, but not substitute for it. So you need to supply full proteomes from something. mRNA/EST data is not sufficient by itself, so make sure you have enough protein evidence. 2. All models are ultimately generated by the predictors (maker doesn?t generate these), so care should be taken to train the predictors as best as possible. Also train at least two predictors (SNAP and Augustus are recommended). If they are both well trained, then they will be in general concordance with one another. If they are not well trained, then each program will produce very different models. So visually inspecting their concordance can give you an idea of if they need to be retrained. 3. More often than not, poor predictor performance is actually the result of repeat related complications. Many genomes that at first may seem repeat poor may actually contain novel repeats that can affect the performance of the gene predictors. If you are getting fewer genes than you expect or ab initio models are not in concordance from two independent predictors, run something like RepeatScout to generate species specific libraries. This may seem minor, but I have seen predictions go from apparently random to textbook perfect just by producing a species specific library of novel repeats. 4. You can?t have gene models if you don?t have open reading frames to translate through. Also gene predictors need sequence upstream and downstream of genes to work correctly, so if contigs are too short they won?t be useful for prediction even if the sum of the contigs is large enough to encompass the whole genome. In general any contig smaller than 10kb is not annotatable, so you should aim for as high an N50 value as possible. Annotating a new genome is sort of like a moving target. No two organisms are alike, so you usually have to to identify what deficiencies exist based on preliminary runs and then correct for them in subsequent runs. Thanks, Carson On 1/30/14, 5:59 PM, "Sivaranjani Namasivayam" wrote: >Hi All, > >This is a problem I have been having for quite some time; maker predicts >much lower number of genes or proteins than in my evidence RNA-seq >transcripts. My genome is not repetitive and is atleast 90% complete. > >I tried setting est2genome to 1, but that still doesn't seem to increase >the predicted gene set too much. If I input ~13000 genes(21000 >transcripts) as evidence I get predictions of ~5000 genes(6000 >transcripts). >I ran MAKER again with the transcripts that didn't have a gene model >predicted in the first run, and this time MAKER predicted gene models for >~20-30% of those transcripts. > >Is there anything that can be done to increase the predicted gene count? > >Thanks, >Ranjani >________________________________________ >From: maker-devel on behalf of >Carson Holt >Sent: Thursday, January 30, 2014 4:14 PM >To: Daniel Ence; dhivya arasappan; maker-devel at yandell-lab.org >Subject: Re: [maker-devel] maker annotation with cufflinks output > >What you get back from cufflinks should not necessarily be considered a >transcript count, and you should always expect the count given by >cufflinks to be high relative to assembly methods like trinity (especially >in plants). This is because repetitive elements, spurious alignments, and >pseudogenes will all inflate the count because it is an alignment based >method which can be more sensitive but will also generate a lot of false >positives. Fortunately the false positives will mostly be singe exon >results and will be filtered out by maker. Also your mRNA-seq data from >cufflinks will contribute to hints that can generate genes in the absence >of an ab-intio gene prediction, but if the gene finder doesn?t think the >hints make sense it will ignore them. So a lot of cufflinks results that >don?t make sense with respect to ORF etc., will fall into the category of >being ignored. > >In addition, you should try running your pipeline through CEGMA >(http://korflab.ucdavis.edu/datasets/cegma/) to identify the expected >completeness of the genome. For example if a genome of 70% completeness >then you only expect to recover 70% of the genes. I believe CEGMA can also >be run online from the iPlant discovery environment and iPlant atmosphere >images. Also make sure you are including proteins with your MAKER run, >as not all genes will be expressed, so mRNAseq will only capture a portion >of the genes and that portion can be as low as 50%. > >Thanks, >Carson > > >On 1/30/14, 1:51 PM, "Daniel Ence" wrote: > >>Hi Dhivya, >> >>I think there a few numbers that could be helpful to understand what's >>happening here. >> >>How many transcripts did Trinity assembly the RNA-seq data into? Also, >>you had 29,000 transcripts from cufflinks, but fewer from MAKER when you >>gave it the cufflinks data. How many transcripts did MAKER identify with >>the cufflinks data? Did you still get more than the 10,000 transcripts >>that you found with just the Trinity data? >> >>A key part of MAKER's approach to genome annotation that might be >>affecting it's performance is that it only annotates a gene where there >>is both evidence (like your RNA-seq data) and an ab-initio prediction. If >>a prediction is unsupported by the evidence, then MAKER won't annotate a >>gene and if evidence aligns where there's no prediction, MAKER won't >>annotate a gene either. What ab-initio predictors are you using and have >>they been trained specific genome? >> >>You can force MAKER to automatically promote evidence alignments to a >>gene model by setting the est2genome option to 1, but that will usually >>give you many false positives. >> >>Try rerunning it with either the Trinity data or the Cufflinks data and >>with est2genome set to 1, and let us know how that affects the MAKER >>results. >> >>Thanks, >>Daniel >> >>Daniel Ence >>Graduate Student >>Eccles Institute of Human Genetics >>University of Utah >>15 North 2030 East, Room 2100 >>Salt Lake City, UT 84112-5330 >>________________________________________ >>From: maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of >>dhivya arasappan [darasappan at gmail.com] >>Sent: Thursday, January 30, 2014 11:18 AM >>To: maker-devel at yandell-lab.org >>Subject: [maker-devel] maker annotation with cufflinks output >> >>Hello, >> >>I am trying to annotate a 200 mb plant genome for which I have a very >>good assembly. >> >>I tried to denovo assemble RNA-seq data using trinity and ran maker >>using my genome assembly and the trinity results. I did not get as >>many transcripts as expected, around 10,000 transcripts. >> >>So, I decided to try a different approach. I did a genome assisted >>assembly of the RNA-seq data using tophat/cufflinks. This pipeline >>generated 21,000 genes, 29,000 transcripts. I then ran maker using my >>genome assembly and the cufflinks result. I get much less number of >>transcripts as a result. >> >>If cufflinks found 29000 transcripts by mapping to the genome, I'm >>confused as to why maker is not finding the same. >> >>Any suggestions would be appreciated. >> >>Thanks >>Dhivya >> >> >>_______________________________________________ >>maker-devel mailing list >>maker-devel at box290.bluehost.com >>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org >> >>_______________________________________________ >>maker-devel mailing list >>maker-devel at box290.bluehost.com >>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org > > > >_______________________________________________ >maker-devel mailing list >maker-devel at box290.bluehost.com >http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org From darasappan at gmail.com Thu Jan 30 14:22:14 2014 From: darasappan at gmail.com (dhivya arasappan) Date: Thu, 30 Jan 2014 15:22:14 -0600 Subject: [maker-devel] maker annotation with cufflinks output In-Reply-To: References: <516896DE-1ACB-460B-9842-90E12CB72343@gmail.com> Message-ID: <3D1D5626-3130-4C4A-B808-FE2366A42048@gmail.com> Thank you for this information. Our server is currently down, so I'm unable to get you all the statistics you've asked for. Once the server is back up, I'll email again with more numbers But I can tell you that I did run cegma first and got around 92% completeness (full genes) and 98% completeness (partial genes). This is why I'm even more puzzled by maker results. Thanks again Dhivya On Jan 30, 2014, at 3:14 PM, Carson Holt wrote: > What you get back from cufflinks should not necessarily be > considered a > transcript count, and you should always expect the count given by > cufflinks to be high relative to assembly methods like trinity > (especially > in plants). This is because repetitive elements, spurious > alignments, and > pseudogenes will all inflate the count because it is an alignment > based > method which can be more sensitive but will also generate a lot of > false > positives. Fortunately the false positives will mostly be singe exon > results and will be filtered out by maker. Also your mRNA-seq data > from > cufflinks will contribute to hints that can generate genes in the > absence > of an ab-intio gene prediction, but if the gene finder doesn?t think > the > hints make sense it will ignore them. So a lot of cufflinks results > that > don?t make sense with respect to ORF etc., will fall into the > category of > being ignored. > > In addition, you should try running your pipeline through CEGMA > (http://korflab.ucdavis.edu/datasets/cegma/) to identify the expected > completeness of the genome. For example if a genome of 70% > completeness > then you only expect to recover 70% of the genes. I believe CEGMA > can also > be run online from the iPlant discovery environment and iPlant > atmosphere > images. Also make sure you are including proteins with your MAKER > run, > as not all genes will be expressed, so mRNAseq will only capture a > portion > of the genes and that portion can be as low as 50%. > > Thanks, > Carson > > > On 1/30/14, 1:51 PM, "Daniel Ence" wrote: > >> Hi Dhivya, >> >> I think there a few numbers that could be helpful to understand >> what's >> happening here. >> >> How many transcripts did Trinity assembly the RNA-seq data into? >> Also, >> you had 29,000 transcripts from cufflinks, but fewer from MAKER >> when you >> gave it the cufflinks data. How many transcripts did MAKER identify >> with >> the cufflinks data? Did you still get more than the 10,000 >> transcripts >> that you found with just the Trinity data? >> >> A key part of MAKER's approach to genome annotation that might be >> affecting it's performance is that it only annotates a gene where >> there >> is both evidence (like your RNA-seq data) and an ab-initio >> prediction. If >> a prediction is unsupported by the evidence, then MAKER won't >> annotate a >> gene and if evidence aligns where there's no prediction, MAKER won't >> annotate a gene either. What ab-initio predictors are you using and >> have >> they been trained specific genome? >> >> You can force MAKER to automatically promote evidence alignments to a >> gene model by setting the est2genome option to 1, but that will >> usually >> give you many false positives. >> >> Try rerunning it with either the Trinity data or the Cufflinks data >> and >> with est2genome set to 1, and let us know how that affects the MAKER >> results. >> >> Thanks, >> Daniel >> >> Daniel Ence >> Graduate Student >> Eccles Institute of Human Genetics >> University of Utah >> 15 North 2030 East, Room 2100 >> Salt Lake City, UT 84112-5330 >> ________________________________________ >> From: maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of >> dhivya arasappan [darasappan at gmail.com] >> Sent: Thursday, January 30, 2014 11:18 AM >> To: maker-devel at yandell-lab.org >> Subject: [maker-devel] maker annotation with cufflinks output >> >> Hello, >> >> I am trying to annotate a 200 mb plant genome for which I have a very >> good assembly. >> >> I tried to denovo assemble RNA-seq data using trinity and ran maker >> using my genome assembly and the trinity results. I did not get as >> many transcripts as expected, around 10,000 transcripts. >> >> So, I decided to try a different approach. I did a genome assisted >> assembly of the RNA-seq data using tophat/cufflinks. This pipeline >> generated 21,000 genes, 29,000 transcripts. I then ran maker using >> my >> genome assembly and the cufflinks result. I get much less number of >> transcripts as a result. >> >> If cufflinks found 29000 transcripts by mapping to the genome, I'm >> confused as to why maker is not finding the same. >> >> Any suggestions would be appreciated. >> >> Thanks >> Dhivya >> >> >> _______________________________________________ >> maker-devel mailing list >> maker-devel at box290.bluehost.com >> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org >> >> _______________________________________________ >> maker-devel mailing list >> maker-devel at box290.bluehost.com >> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org > > From sujaikumar at gmail.com Fri Jan 31 01:39:26 2014 From: sujaikumar at gmail.com (Sujai) Date: Fri, 31 Jan 2014 08:39:26 +0000 Subject: [maker-devel] maker annotation with cufflinks output In-Reply-To: References: <516896DE-1ACB-460B-9842-90E12CB72343@gmail.com> Message-ID: Many thanks, Carson - for this fabulous post describing general principles. You've hinted at some of these tips in other posts, but it's great to have them in one place. Thanks especially for the kinds of things that make a big difference (point 3 below). More such tips always welcome! Best wishes, and thanks for an amazing piece of kit. - Sujai On 31 January 2014 07:20, Carson Holt wrote: > So just a few suggestions. If you are getting fewer genes than you expect, > that is usually an indication that the evidence provided is insufficient, > the gene predictors need to be retrained, the repeat masking is > insufficient, or the assembly has problems. > > Here is more explanation on each point: > > 1. In addition to any mRNA/EST data, you should provided full proteomes > from a minimum of two species as closely related as possible, and perhaps > a comprehensive database such as UniProt/Swissprot. Note that based on > experience the comprehensive database cannot substitute for a related > species proteome, they can complement it, but not substitute for it. So > you need to supply full proteomes from something. mRNA/EST data is not > sufficient by itself, so make sure you have enough protein evidence. > > 2. All models are ultimately generated by the predictors (maker doesn't > generate these), so care should be taken to train the predictors as best > as possible. Also train at least two predictors (SNAP and Augustus are > recommended). If they are both well trained, then they will be in general > concordance with one another. If they are not well trained, then each > program will produce very different models. So visually inspecting their > concordance can give you an idea of if they need to be retrained. > > 3. More often than not, poor predictor performance is actually the result > of repeat related complications. Many genomes that at first may seem > repeat poor may actually contain novel repeats that can affect the > performance of the gene predictors. If you are getting fewer genes than > you expect or ab initio models are not in concordance from two independent > predictors, run something like RepeatScout to generate species specific > libraries. This may seem minor, but I have seen predictions go from > apparently random to textbook perfect just by producing a species specific > library of novel repeats. > > 4. You can't have gene models if you don't have open reading frames to > translate through. Also gene predictors need sequence upstream and > downstream of genes to work correctly, so if contigs are too short they > won't be useful for prediction even if the sum of the contigs is large > enough to encompass the whole genome. In general any contig smaller than > 10kb is not annotatable, so you should aim for as high an N50 value as > possible. > > > Annotating a new genome is sort of like a moving target. No two organisms > are alike, so you usually have to to identify what deficiencies exist > based on preliminary runs and then correct for them in subsequent runs. > > Thanks, > Carson > > > > On 1/30/14, 5:59 PM, "Sivaranjani Namasivayam" wrote: > >>Hi All, >> >>This is a problem I have been having for quite some time; maker predicts >>much lower number of genes or proteins than in my evidence RNA-seq >>transcripts. My genome is not repetitive and is atleast 90% complete. >> >>I tried setting est2genome to 1, but that still doesn't seem to increase >>the predicted gene set too much. If I input ~13000 genes(21000 >>transcripts) as evidence I get predictions of ~5000 genes(6000 >>transcripts). >>I ran MAKER again with the transcripts that didn't have a gene model >>predicted in the first run, and this time MAKER predicted gene models for >>~20-30% of those transcripts. >> >>Is there anything that can be done to increase the predicted gene count? >> >>Thanks, >>Ranjani >>________________________________________ >>From: maker-devel on behalf of >>Carson Holt >>Sent: Thursday, January 30, 2014 4:14 PM >>To: Daniel Ence; dhivya arasappan; maker-devel at yandell-lab.org >>Subject: Re: [maker-devel] maker annotation with cufflinks output >> >>What you get back from cufflinks should not necessarily be considered a >>transcript count, and you should always expect the count given by >>cufflinks to be high relative to assembly methods like trinity (especially >>in plants). This is because repetitive elements, spurious alignments, and >>pseudogenes will all inflate the count because it is an alignment based >>method which can be more sensitive but will also generate a lot of false >>positives. Fortunately the false positives will mostly be singe exon >>results and will be filtered out by maker. Also your mRNA-seq data from >>cufflinks will contribute to hints that can generate genes in the absence >>of an ab-intio gene prediction, but if the gene finder doesn't think the >>hints make sense it will ignore them. So a lot of cufflinks results that >>don't make sense with respect to ORF etc., will fall into the category of >>being ignored. >> >>In addition, you should try running your pipeline through CEGMA >>(http://korflab.ucdavis.edu/datasets/cegma/) to identify the expected >>completeness of the genome. For example if a genome of 70% completeness >>then you only expect to recover 70% of the genes. I believe CEGMA can also >>be run online from the iPlant discovery environment and iPlant atmosphere >>images. Also make sure you are including proteins with your MAKER run, >>as not all genes will be expressed, so mRNAseq will only capture a portion >>of the genes and that portion can be as low as 50%. >> >>Thanks, >>Carson >> >> >>On 1/30/14, 1:51 PM, "Daniel Ence" wrote: >> >>>Hi Dhivya, >>> >>>I think there a few numbers that could be helpful to understand what's >>>happening here. >>> >>>How many transcripts did Trinity assembly the RNA-seq data into? Also, >>>you had 29,000 transcripts from cufflinks, but fewer from MAKER when you >>>gave it the cufflinks data. How many transcripts did MAKER identify with >>>the cufflinks data? Did you still get more than the 10,000 transcripts >>>that you found with just the Trinity data? >>> >>>A key part of MAKER's approach to genome annotation that might be >>>affecting it's performance is that it only annotates a gene where there >>>is both evidence (like your RNA-seq data) and an ab-initio prediction. If >>>a prediction is unsupported by the evidence, then MAKER won't annotate a >>>gene and if evidence aligns where there's no prediction, MAKER won't >>>annotate a gene either. What ab-initio predictors are you using and have >>>they been trained specific genome? >>> >>>You can force MAKER to automatically promote evidence alignments to a >>>gene model by setting the est2genome option to 1, but that will usually >>>give you many false positives. >>> >>>Try rerunning it with either the Trinity data or the Cufflinks data and >>>with est2genome set to 1, and let us know how that affects the MAKER >>>results. >>> >>>Thanks, >>>Daniel >>> >>>Daniel Ence >>>Graduate Student >>>Eccles Institute of Human Genetics >>>University of Utah >>>15 North 2030 East, Room 2100 >>>Salt Lake City, UT 84112-5330 >>>________________________________________ >>>From: maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of >>>dhivya arasappan [darasappan at gmail.com] >>>Sent: Thursday, January 30, 2014 11:18 AM >>>To: maker-devel at yandell-lab.org >>>Subject: [maker-devel] maker annotation with cufflinks output >>> >>>Hello, >>> >>>I am trying to annotate a 200 mb plant genome for which I have a very >>>good assembly. >>> >>>I tried to denovo assemble RNA-seq data using trinity and ran maker >>>using my genome assembly and the trinity results. I did not get as >>>many transcripts as expected, around 10,000 transcripts. >>> >>>So, I decided to try a different approach. I did a genome assisted >>>assembly of the RNA-seq data using tophat/cufflinks. This pipeline >>>generated 21,000 genes, 29,000 transcripts. I then ran maker using my >>>genome assembly and the cufflinks result. I get much less number of >>>transcripts as a result. >>> >>>If cufflinks found 29000 transcripts by mapping to the genome, I'm >>>confused as to why maker is not finding the same. >>> >>>Any suggestions would be appreciated. >>> >>>Thanks >>>Dhivya >>> >>> >>>_______________________________________________ >>>maker-devel mailing list >>>maker-devel at box290.bluehost.com >>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org >>> >>>_______________________________________________ >>>maker-devel mailing list >>>maker-devel at box290.bluehost.com >>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org >> >> >> >>_______________________________________________ >>maker-devel mailing list >>maker-devel at box290.bluehost.com >>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org > > > > _______________________________________________ > maker-devel mailing list > maker-devel at box290.bluehost.com > http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org